AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052762


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052762.t1 MTR_4g015080 95.385 520 24 0 1 520 58 577 0.0 1026
MS.gene052762.t1 MTR_7g067010 83.333 516 86 0 1 516 48 563 0.0 900
MS.gene052762.t1 MTR_3g462710 69.790 523 155 3 1 520 48 570 0.0 744
MS.gene052762.t1 MTR_3g462710 70.282 461 134 3 63 520 1 461 0.0 661
MS.gene052762.t1 MTR_3g112470 48.069 518 255 6 1 515 47 553 2.12e-168 488
MS.gene052762.t1 MTR_3g112460 47.876 518 256 6 1 515 47 553 1.56e-167 486
MS.gene052762.t1 MTR_5g055000 46.947 524 267 8 2 517 43 563 2.08e-163 476
MS.gene052762.t1 MTR_7g098200 43.654 520 280 4 1 513 53 566 4.02e-156 458
MS.gene052762.t1 MTR_3g112450 46.641 521 260 9 1 515 47 555 6.32e-155 454
MS.gene052762.t1 MTR_7g098230 43.954 521 279 4 1 514 50 564 2.05e-153 451
MS.gene052762.t1 MTR_5g012290 46.080 523 270 8 1 514 51 570 2.43e-152 448
MS.gene052762.t1 MTR_7g088825 43.702 524 285 6 4 519 49 570 6.27e-152 447
MS.gene052762.t1 MTR_7g098200 43.462 520 271 5 1 513 53 556 3.31e-151 445
MS.gene052762.t1 MTR_7g098180 42.395 526 289 5 1 518 55 574 5.43e-151 445
MS.gene052762.t1 MTR_1g116930 42.747 517 285 5 4 517 50 558 1.48e-150 443
MS.gene052762.t1 MTR_7g010820 45.936 529 264 7 4 517 53 574 4.82e-150 442
MS.gene052762.t1 MTR_7g098220 43.238 525 285 3 1 518 10 528 5.41e-150 441
MS.gene052762.t1 MTR_7g098220 43.238 525 285 3 1 518 54 572 3.70e-149 440
MS.gene052762.t1 MTR_3g072300 43.243 518 288 4 1 515 48 562 4.44e-147 434
MS.gene052762.t1 MTR_5g012270 43.619 525 280 8 1 514 53 572 9.24e-147 434
MS.gene052762.t1 MTR_7g098040 42.035 521 289 3 1 514 58 572 2.76e-146 434
MS.gene052762.t1 MTR_5g014150 42.533 529 293 5 1 520 68 594 6.36e-146 432
MS.gene052762.t1 MTR_7g098160 40.691 521 296 3 1 514 57 571 7.99e-146 432
MS.gene052762.t1 MTR_4g098800 44.163 514 273 6 4 509 63 570 1.34e-145 431
MS.gene052762.t1 MTR_7g088790 43.156 526 287 7 3 519 55 577 1.41e-145 431
MS.gene052762.t1 MTR_4g098800 44.163 514 273 6 4 509 128 635 8.08e-145 431
MS.gene052762.t1 MTR_3g069500 43.269 520 281 7 1 519 59 565 8.64e-143 423
MS.gene052762.t1 MTR_1g041835 42.692 520 286 5 1 514 51 564 6.44e-141 418
MS.gene052762.t1 MTR_7g005930 41.553 515 290 7 1 511 59 566 7.10e-141 419
MS.gene052762.t1 MTR_4g101380 44.106 526 279 7 1 514 51 573 7.98e-141 419
MS.gene052762.t1 MTR_7g098090 39.924 526 298 4 1 514 57 576 1.08e-140 419
MS.gene052762.t1 MTR_7g013270 42.447 523 286 9 4 520 117 630 1.59e-140 420
MS.gene052762.t1 MTR_1g075440 41.571 522 290 6 1 514 52 566 1.65e-140 418
MS.gene052762.t1 MTR_1g041815 42.885 520 285 5 1 514 51 564 5.41e-140 416
MS.gene052762.t1 MTR_3g005010 42.337 522 267 7 1 517 54 546 3.03e-139 413
MS.gene052762.t1 MTR_3g014790 43.726 526 267 6 1 515 41 548 5.01e-139 413
MS.gene052762.t1 MTR_8g038880 41.698 530 276 5 1 517 44 553 6.77e-137 408
MS.gene052762.t1 MTR_4g019580 40.577 520 301 6 1 518 60 573 2.66e-136 407
MS.gene052762.t1 MTR_7g088820 39.885 524 305 6 4 519 52 573 2.30e-135 405
MS.gene052762.t1 MTR_1g041875 42.200 500 273 5 1 495 53 541 7.16e-135 403
MS.gene052762.t1 MTR_7g065080 40.153 523 295 7 1 519 55 563 2.51e-134 402
MS.gene052762.t1 MTR_1g041885 42.032 502 275 5 1 497 6 496 4.97e-134 399
MS.gene052762.t1 MTR_5g038060 42.065 523 288 7 4 514 58 577 8.39e-134 401
MS.gene052762.t1 MTR_7g006540 41.243 531 290 9 1 514 87 612 1.43e-133 402
MS.gene052762.t1 MTR_7g088820 40.275 509 294 6 19 519 5 511 2.42e-133 397
MS.gene052762.t1 MTR_7g098200 42.576 458 250 4 63 513 1 452 1.65e-132 394
MS.gene052762.t1 MTR_3g069440 41.762 522 296 6 1 519 57 573 3.12e-132 397
MS.gene052762.t1 MTR_4g033325 41.731 520 271 8 4 518 58 550 1.01e-131 394
MS.gene052762.t1 MTR_1g042310 39.615 520 303 5 1 514 6 520 4.34e-131 392
MS.gene052762.t1 MTR_4g033315 41.233 519 277 7 4 518 58 552 4.70e-131 392
MS.gene052762.t1 MTR_4g033310 41.233 519 277 7 4 518 58 552 4.70e-131 392
MS.gene052762.t1 MTR_1g042310 39.615 520 303 5 1 514 13 527 5.10e-131 392
MS.gene052762.t1 MTR_1g042310 39.615 520 303 5 1 514 50 564 2.95e-130 392
MS.gene052762.t1 MTR_7g065080 40.900 489 271 7 35 519 2 476 3.46e-130 388
MS.gene052762.t1 MTR_0294s0020 41.618 519 273 8 4 518 58 550 4.19e-130 390
MS.gene052762.t1 MTR_3g069420 40.307 521 303 7 1 518 58 573 1.03e-129 390
MS.gene052762.t1 MTR_7g111260 38.697 522 299 9 4 518 43 550 5.84e-126 380
MS.gene052762.t1 MTR_4g114340 44.190 525 271 11 1 515 48 560 5.96e-126 380
MS.gene052762.t1 MTR_8g469480 38.636 528 309 6 4 519 65 589 1.17e-125 380
MS.gene052762.t1 MTR_2g017750 40.234 512 289 8 20 514 77 588 1.23e-125 380
MS.gene052762.t1 MTR_4g033330 41.414 495 265 6 4 494 58 531 3.48e-123 371
MS.gene052762.t1 MTR_5g085850 42.015 526 277 10 1 518 54 559 8.27e-123 372
MS.gene052762.t1 MTR_4g107580 37.214 524 315 7 4 514 51 573 4.79e-122 370
MS.gene052762.t1 MTR_4g107510 36.484 529 313 7 4 515 63 585 3.06e-121 369
MS.gene052762.t1 MTR_3g100980 40.114 526 292 9 2 517 41 553 4.44e-120 365
MS.gene052762.t1 MTR_1g085090 38.845 502 287 9 18 514 60 546 4.97e-120 365
MS.gene052762.t1 MTR_4g033325 41.126 462 240 8 62 518 18 452 5.14e-119 358
MS.gene052762.t1 MTR_7g088820 39.785 465 270 6 63 519 1 463 1.41e-117 355
MS.gene052762.t1 MTR_4g033375 41.394 459 243 6 4 457 59 496 3.56e-117 355
MS.gene052762.t1 MTR_4g107670 38.148 540 299 10 2 518 49 576 8.88e-117 356
MS.gene052762.t1 MTR_8g087780 40.075 534 304 9 1 518 45 578 9.94e-117 357
MS.gene052762.t1 MTR_2g005130 38.610 518 292 9 3 514 66 563 6.81e-116 355
MS.gene052762.t1 MTR_4g033325 41.190 437 232 6 87 518 10 426 1.96e-115 348
MS.gene052762.t1 MTR_4g033385 39.958 478 254 9 46 518 4 453 2.82e-115 348
MS.gene052762.t1 MTR_3g100980 38.087 554 292 10 2 517 41 581 6.24e-114 350
MS.gene052762.t1 MTR_8g087810 40.113 531 301 9 1 514 45 575 1.33e-113 348
MS.gene052762.t1 MTR_4g033395 41.176 459 244 7 4 457 59 496 1.36e-113 345
MS.gene052762.t1 MTR_4g107530 35.902 532 320 9 3 518 59 585 3.14e-113 348
MS.gene052762.t1 MTR_8g469310 38.826 528 310 9 2 518 51 576 5.15e-112 344
MS.gene052762.t1 MTR_8g469470 34.906 530 331 5 1 517 56 584 3.51e-110 340
MS.gene052762.t1 MTR_4g123537 39.388 490 277 10 32 515 96 571 9.64e-110 339
MS.gene052762.t1 MTR_5g038380 36.832 524 318 8 2 514 53 574 5.47e-109 336
MS.gene052762.t1 MTR_7g098150 40.488 410 231 4 1 403 57 460 6.66e-107 328
MS.gene052762.t1 MTR_1g009200 37.548 522 301 10 4 511 54 564 7.04e-104 323
MS.gene052762.t1 MTR_1g026740 35.203 517 319 9 4 511 44 553 8.28e-104 323
MS.gene052762.t1 MTR_5g038190 34.953 535 328 8 1 520 48 577 4.85e-103 321
MS.gene052762.t1 MTR_8g103233 37.645 518 299 11 1 505 41 547 3.50e-102 319
MS.gene052762.t1 MTR_4g107610 35.645 519 318 9 3 511 57 569 1.41e-99 313
MS.gene052762.t1 MTR_1g026750 35.453 519 315 11 4 511 45 554 5.46e-98 308
MS.gene052762.t1 MTR_2g101650 34.690 516 314 11 4 505 51 557 2.15e-97 306
MS.gene052762.t1 MTR_2g101610 36.311 515 307 11 4 505 54 560 2.47e-96 305
MS.gene052762.t1 MTR_6g008690 36.517 534 291 10 1 514 31 536 5.18e-96 301
MS.gene052762.t1 MTR_1g057460 36.739 509 294 12 4 505 71 558 9.83e-96 302
MS.gene052762.t1 MTR_2g101590 35.728 515 310 11 4 505 53 559 1.00e-95 303
MS.gene052762.t1 MTR_1g057460 36.220 508 296 12 5 505 1 487 1.76e-95 299
MS.gene052762.t1 MTR_1g026770 33.915 516 326 9 4 511 42 550 7.05e-95 299
MS.gene052762.t1 MTR_7g098210 36.735 490 232 10 33 514 23 442 1.04e-94 295
MS.gene052762.t1 MTR_7g064780 32.887 523 338 8 4 516 53 572 4.24e-94 298
MS.gene052762.t1 MTR_2g101640 34.308 513 320 10 4 505 50 556 2.72e-93 297
MS.gene052762.t1 MTR_4g024930 36.276 521 294 13 1 511 60 552 1.47e-89 286
MS.gene052762.t1 MTR_0236s0050 35.897 507 299 11 5 505 1 487 7.32e-89 282
MS.gene052762.t1 MTR_4g011280 33.528 513 322 10 4 505 59 563 2.34e-88 283
MS.gene052762.t1 MTR_7g064800 33.771 533 324 13 3 516 52 574 3.17e-88 283
MS.gene052762.t1 MTR_2g101560 32.370 519 328 9 1 505 51 560 5.35e-83 270
MS.gene052762.t1 MTR_2g093160 31.670 521 329 8 4 516 48 549 4.36e-80 260
MS.gene052762.t1 MTR_2g093180 31.931 523 326 9 4 516 48 550 7.27e-77 252
MS.gene052762.t1 MTR_7g051880 30.966 507 316 8 5 511 53 525 2.94e-73 242
MS.gene052762.t1 MTR_2g093640 30.303 528 327 10 4 516 48 549 1.76e-72 240
MS.gene052762.t1 MTR_4g033310 39.527 296 168 3 225 518 202 488 4.58e-72 238
MS.gene052762.t1 MTR_4g033310 48.921 139 64 2 4 142 58 189 2.08e-29 121
MS.gene052762.t1 MTR_7g051830 30.769 507 317 8 5 511 53 525 1.26e-71 237
MS.gene052762.t1 MTR_7g052600 30.375 507 319 8 5 511 53 525 1.98e-70 234
MS.gene052762.t1 MTR_1g009170 32.426 404 210 10 100 494 9 358 7.26e-57 194
MS.gene052762.t1 MTR_3g065350 39.264 163 93 2 283 445 1 157 2.22e-31 119
MS.gene052762.t1 MTR_4g033390 42.353 85 49 0 429 513 30 114 4.80e-19 83.6
MS.gene052762.t1 MTR_2g093650 25.455 220 105 5 291 508 34 196 1.36e-12 67.4
MS.gene052762.t1 MTR_8g091265 36.538 104 62 2 248 347 6 109 1.42e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052762.t1 AT3G54140 73.888 517 133 2 1 515 48 564 0.0 805
MS.gene052762.t1 AT3G54140 73.888 517 133 2 1 515 48 564 0.0 805
MS.gene052762.t1 AT5G01180 71.318 516 147 1 1 515 49 564 0.0 773
MS.gene052762.t1 AT5G01180 71.318 516 147 1 1 515 49 564 0.0 773
MS.gene052762.t1 AT5G01180 71.318 516 147 1 1 515 49 564 0.0 773
MS.gene052762.t1 AT2G02040 59.847 523 201 6 1 517 65 584 0.0 632
MS.gene052762.t1 AT1G62200 54.894 521 221 5 1 515 76 588 0.0 583
MS.gene052762.t1 AT1G62200 52.182 550 220 7 1 515 90 631 0.0 568
MS.gene052762.t1 AT1G62200 52.182 550 220 7 1 515 76 617 0.0 567
MS.gene052762.t1 AT2G02020 50.385 520 214 8 1 516 66 545 1.26e-178 513
MS.gene052762.t1 AT1G68570 48.659 522 260 5 4 517 20 541 1.53e-161 471
MS.gene052762.t1 AT1G68570 48.659 522 260 5 4 517 50 571 5.94e-161 470
MS.gene052762.t1 AT2G02020 46.346 520 214 8 1 516 66 524 4.00e-156 455
MS.gene052762.t1 AT5G19640 44.168 523 268 8 1 518 83 586 2.29e-147 436
MS.gene052762.t1 AT4G21680 44.466 524 275 8 4 515 55 574 1.07e-143 426
MS.gene052762.t1 AT3G54450 40.381 525 290 7 1 517 36 545 2.08e-139 414
MS.gene052762.t1 AT1G32450 42.692 520 284 7 4 511 64 581 3.34e-139 415
MS.gene052762.t1 AT2G40460 41.006 517 293 5 1 514 48 555 5.91e-139 414
MS.gene052762.t1 AT1G12110 42.939 524 286 8 1 515 51 570 1.01e-136 408
MS.gene052762.t1 AT2G37900 42.775 519 284 7 1 517 62 569 7.62e-136 405
MS.gene052762.t1 AT2G26690 44.639 513 265 8 1 505 3 504 2.17e-135 403
MS.gene052762.t1 AT2G26690 44.639 513 265 8 1 505 15 516 2.33e-135 403
MS.gene052762.t1 AT2G26690 44.639 513 265 8 1 505 48 549 1.04e-134 402
MS.gene052762.t1 AT2G37900 43.200 500 271 7 20 517 2 490 1.62e-134 399
MS.gene052762.t1 AT3G53960 41.459 521 296 8 1 517 61 576 4.96e-133 399
MS.gene052762.t1 AT5G46050 40.883 521 294 6 1 514 51 564 5.13e-132 396
MS.gene052762.t1 AT5G13400 40.226 532 298 7 1 517 88 614 1.09e-130 394
MS.gene052762.t1 AT5G46040 40.691 521 295 6 1 514 51 564 1.07e-129 390
MS.gene052762.t1 AT1G69870 40.613 522 294 10 4 514 78 594 1.50e-128 388
MS.gene052762.t1 AT1G72140 38.667 525 283 5 1 515 58 553 1.63e-126 380
MS.gene052762.t1 AT1G72130 39.122 524 276 8 1 517 49 536 2.31e-126 380
MS.gene052762.t1 AT1G22540 40.805 522 284 7 1 517 54 555 4.84e-126 380
MS.gene052762.t1 AT1G72125 41.412 524 283 7 1 517 53 559 9.43e-125 376
MS.gene052762.t1 AT1G59740 40.784 510 287 7 3 505 67 568 5.21e-124 375
MS.gene052762.t1 AT3G21670 41.556 527 274 9 1 514 53 558 2.12e-123 374
MS.gene052762.t1 AT1G69850 39.405 538 293 8 2 514 50 579 2.59e-123 374
MS.gene052762.t1 AT1G27040 40.462 519 292 9 2 513 20 528 2.67e-122 369
MS.gene052762.t1 AT1G27040 40.462 519 292 9 2 513 52 560 8.75e-122 369
MS.gene052762.t1 AT1G27040 40.462 519 292 9 2 513 48 556 1.03e-121 369
MS.gene052762.t1 AT1G72120 40.494 526 285 6 1 519 53 557 3.17e-118 359
MS.gene052762.t1 AT1G22550 39.474 532 288 10 1 519 54 564 5.45e-116 354
MS.gene052762.t1 AT5G46050 40.741 459 258 6 63 514 1 452 2.35e-114 347
MS.gene052762.t1 AT1G22570 38.722 532 293 8 1 519 17 528 2.56e-114 348
MS.gene052762.t1 AT1G22570 38.722 532 293 8 1 519 54 565 9.91e-114 348
MS.gene052762.t1 AT1G33440 39.062 512 287 9 4 505 65 561 6.98e-112 345
MS.gene052762.t1 AT1G52190 37.645 518 302 11 4 505 48 560 8.33e-112 345
MS.gene052762.t1 AT1G18880 36.226 530 318 11 2 516 44 568 1.02e-111 343
MS.gene052762.t1 AT1G27080 36.792 530 300 10 1 514 38 548 4.64e-111 342
MS.gene052762.t1 AT1G27080 36.902 523 295 10 8 514 3 506 1.79e-110 339
MS.gene052762.t1 AT5G62730 37.079 534 288 9 2 515 22 527 1.57e-107 331
MS.gene052762.t1 AT5G62730 37.079 534 288 9 2 515 81 586 5.18e-107 332
MS.gene052762.t1 AT1G72130 38.161 435 232 6 90 517 14 418 8.85e-107 325
MS.gene052762.t1 AT1G72130 38.161 435 232 6 90 517 14 418 8.85e-107 325
MS.gene052762.t1 AT3G16180 37.428 521 296 12 4 505 50 559 1.03e-105 328
MS.gene052762.t1 AT5G14940 35.460 533 297 13 1 511 31 538 1.60e-104 324
MS.gene052762.t1 AT5G62680 35.674 527 321 10 3 514 69 592 3.01e-103 323
MS.gene052762.t1 AT3G47960 35.038 528 327 9 3 517 87 611 7.48e-100 314
MS.gene052762.t1 AT5G28470 33.143 525 334 11 4 518 44 561 2.60e-95 300
MS.gene052762.t1 AT3G45660 32.375 522 323 9 4 518 48 546 1.50e-92 293
MS.gene052762.t1 AT3G45660 32.375 522 323 9 4 518 48 546 1.50e-92 293
MS.gene052762.t1 AT3G45660 32.375 522 323 9 4 518 69 567 1.66e-92 293
MS.gene052762.t1 AT5G28470 32.952 525 333 12 4 518 44 559 2.87e-92 292
MS.gene052762.t1 AT3G01350 33.209 536 315 12 1 511 31 548 2.92e-91 290
MS.gene052762.t1 AT3G45650 32.375 522 321 10 4 517 49 546 4.36e-91 289
MS.gene052762.t1 AT1G69860 33.908 522 325 9 4 518 45 553 6.77e-90 286
MS.gene052762.t1 AT3G45720 31.286 521 328 9 4 517 46 543 2.23e-89 285
MS.gene052762.t1 AT3G45680 31.670 521 327 11 4 517 47 545 9.38e-87 278
MS.gene052762.t1 AT3G45650 31.022 548 320 11 4 517 49 572 4.78e-86 277
MS.gene052762.t1 AT3G25260 31.641 512 306 8 2 511 46 515 1.84e-83 268
MS.gene052762.t1 AT3G25280 33.072 511 302 8 4 511 48 521 1.14e-82 266
MS.gene052762.t1 AT3G45710 30.019 523 334 10 4 517 48 547 2.60e-79 259
MS.gene052762.t1 AT3G45700 30.058 519 334 10 4 518 43 536 1.11e-78 256
MS.gene052762.t1 AT3G45690 29.537 518 301 12 4 517 45 502 8.55e-70 232
MS.gene052762.t1 AT2G38100 26.408 515 341 11 5 512 2 485 7.74e-46 168
MS.gene052762.t1 AT2G38100 26.408 515 341 11 5 512 18 501 1.13e-45 167
MS.gene052762.t1 AT2G38100 26.408 515 341 11 5 512 24 507 1.55e-45 167
MS.gene052762.t1 AT5G11570 34.940 249 152 4 264 511 237 476 8.97e-39 148
MS.gene052762.t1 AT5G11570 37.719 228 120 8 4 222 40 254 1.11e-35 139

Find 111 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTTGTGTGTTTAAGTTTC+CGG 0.176019 4.4:-85771636 None:intergenic
GTCGGATGGGGATGGGGTTT+TGG 0.221483 4.4:+85771409 MS.gene052762:CDS
ACACTCTAAGTGTCATCTTC+TGG 0.233776 4.4:+85772080 MS.gene052762:CDS
TCAAGTAGAGTGCTATAAAA+AGG 0.238581 4.4:-85771210 None:intergenic
AAACCGTGTGTTTCATCTTT+TGG 0.259430 4.4:+85771256 MS.gene052762:CDS
CAAGTATGCATCAGCTAAAA+AGG 0.280188 4.4:-85770360 None:intergenic
TTTCCCTGATTTCAGGTGTT+TGG 0.304831 4.4:+85771811 MS.gene052762:intron
AAGTTATTGTTGCAGCATTT+AGG 0.328500 4.4:+85771536 MS.gene052762:CDS
CCATCCCTATGTCGATCTTA+TGG 0.330515 4.4:+85772290 MS.gene052762:CDS
GACATAGATACTTGAGAAAC+TGG 0.336849 4.4:-85770402 None:intergenic
CTCGAAGACCGTTACGGACT+TGG 0.350415 4.4:+85770269 MS.gene052762:CDS
TTGCTTCCTCGGTGTTGGTT+TGG 0.353446 4.4:+85771374 MS.gene052762:CDS
TGACCCCTATTCATATTATC+TGG 0.356552 4.4:-85772523 None:intergenic
GAAGTAAAACCAATTGAAAA+AGG 0.359554 4.4:-85771329 None:intergenic
CGTTCGTTTACTCCCCGTTT+GGG 0.363000 4.4:+85771931 MS.gene052762:CDS
TACTTGATTGCGCTTGGAAC+TGG 0.366566 4.4:+85771226 MS.gene052762:CDS
ACAAAAGTTACTACAAGAAA+TGG 0.370351 4.4:+85772484 MS.gene052762:CDS
ACTTGACAAATTCTTGTAAG+AGG 0.385610 4.4:-85771517 None:intergenic
CACTCTAAGTGTCATCTTCT+GGG 0.389839 4.4:+85772081 MS.gene052762:CDS
TCGTTCGTTTACTCCCCGTT+TGG 0.403486 4.4:+85771930 MS.gene052762:CDS
TGATTTCAGGTGTTTGGATA+AGG 0.407783 4.4:+85771817 MS.gene052762:intron
TGCAACAGTATACAGTCAAA+TGG 0.413873 4.4:+85771970 MS.gene052762:CDS
GGATTCCAGATAATATGAAT+AGG 0.414072 4.4:+85772518 MS.gene052762:CDS
TTTCACTTATATCGGTCAAA+TGG 0.422221 4.4:+85772351 MS.gene052762:CDS
GTTGCAGCATTTAGGAAACT+TGG 0.431571 4.4:+85771544 MS.gene052762:CDS
CGGTGCACTCATTGCTTCCT+CGG 0.439767 4.4:+85771363 MS.gene052762:CDS
GATTCCAGATAATATGAATA+GGG 0.442981 4.4:+85772519 MS.gene052762:CDS
TAAAGAAGAGACTTATCATC+TGG 0.447791 4.4:-85771577 None:intergenic
GGCTATCAGTGATGCCCAAA+CGG 0.448610 4.4:-85771945 None:intergenic
ATGAATGTCGGATGGGGATG+GGG 0.453174 4.4:+85771403 MS.gene052762:CDS
ACTCATTGCTTCCTCGGTGT+TGG 0.455639 4.4:+85771369 MS.gene052762:CDS
CACAAACTTCTCACAGCATC+AGG 0.456811 4.4:-85772394 None:intergenic
GTGCAGAGCCTCCATGGATT+CGG 0.457325 4.4:-85771878 None:intergenic
GCTATCAGTGATGCCCAAAC+GGG 0.459760 4.4:-85771944 None:intergenic
ATGCATACTTGGGAAGATAC+TGG 0.462100 4.4:+85770372 MS.gene052762:CDS
GATGAATGTCGGATGGGGAT+GGG 0.465810 4.4:+85771402 MS.gene052762:CDS
AAGCCTTCATGTGATACTAA+TGG 0.469977 4.4:+85771157 MS.gene052762:CDS
GCTGTGTGAATCCGTGTTCA+TGG 0.471308 4.4:-85772153 None:intergenic
CTATGGCATGAGTACAAACT+TGG 0.471382 4.4:+85770238 None:intergenic
AACTATCTCGAAGACCGTTA+CGG 0.475606 4.4:+85770263 MS.gene052762:CDS
AGATGAATGTCGGATGGGGA+TGG 0.477086 4.4:+85771401 MS.gene052762:CDS
GCACTCTACTTGATTGCGCT+TGG 0.477461 4.4:+85771220 MS.gene052762:CDS
ACTACAAGAAATGGAAGTCT+TGG 0.484536 4.4:+85772493 MS.gene052762:CDS
TTCACACAGCTTCAAAGAAT+CGG 0.484967 4.4:+85772166 MS.gene052762:CDS
TGTTACATCACACCATTGCT+TGG 0.490210 4.4:+85770335 MS.gene052762:CDS
GGAACCATGTTTGTGTTACA+AGG 0.495089 4.4:+85771992 MS.gene052762:CDS
CAAGAAATGGAAGTCTTGGT+TGG 0.496663 4.4:+85772497 MS.gene052762:CDS
AAGTGTCATCTTCTGGGTCC+CGG 0.499628 4.4:+85772087 MS.gene052762:CDS
TCAAAGAATCGGAATCGGTC+TGG 0.502170 4.4:+85772177 MS.gene052762:CDS
CTGCAAATACTGTCACAACT+TGG 0.505268 4.4:+85770303 MS.gene052762:CDS
ATCATTTCCACAATCGTGGC+AGG 0.507388 4.4:+85772208 MS.gene052762:CDS
GATGTAGAATCTAAAATCAA+AGG 0.508174 4.4:+85771610 MS.gene052762:CDS
AATGGCTGCCATCCGACGTC+AGG 0.509307 4.4:+85771175 MS.gene052762:CDS
GCAACAGTATACAGTCAAAT+GGG 0.512639 4.4:+85771971 MS.gene052762:CDS
GACACTTAGAGTGTCGAAAA+CGG 0.513721 4.4:-85772071 None:intergenic
CGGTGAACTTTCTTGCGAAA+GGG 0.518248 4.4:-85772129 None:intergenic
AATACTGTCACAACTTGGTC+GGG 0.519066 4.4:+85770308 MS.gene052762:CDS
TAGAATACCTGCCACGATTG+TGG 0.520094 4.4:-85772215 None:intergenic
TAAAAGATTTACCGAATCCA+TGG 0.520585 4.4:+85771867 MS.gene052762:CDS
ACGATGAGACGGTCGTAGAC+CGG 0.520668 4.4:-85772106 None:intergenic
GCGGACAATGTCGAGGCGGA+CGG 0.521632 4.4:-85772242 None:intergenic
GTTACTGTGCAGAGCCTCCA+TGG 0.528525 4.4:-85771884 None:intergenic
CCGGTGAACTTTCTTGCGAA+AGG 0.533554 4.4:-85772130 None:intergenic
ATGTAGAATCTAAAATCAAA+GGG 0.533682 4.4:+85771611 MS.gene052762:CDS
CGATGAGACGGTCGTAGACC+GGG 0.534778 4.4:-85772105 None:intergenic
AAATACTGTCACAACTTGGT+CGG 0.534850 4.4:+85770307 MS.gene052762:CDS
CAGTTTGTCCTGACGTCGGA+TGG 0.535426 4.4:-85771183 None:intergenic
ACTTGCCATAAGATCGACAT+AGG 0.537349 4.4:-85772295 None:intergenic
TGGAGTGCCTGGAGTTGCAA+TGG 0.539760 4.4:+85771429 MS.gene052762:CDS
TTGCAGCATTTAGGAAACTT+GGG 0.546918 4.4:+85771545 MS.gene052762:CDS
TTGCGAAAGGGACGATGAGA+CGG 0.547490 4.4:-85772117 None:intergenic
AATCTAAAATCAAAGGGAGC+CGG 0.549085 4.4:+85771617 MS.gene052762:CDS
TGTGAATCCGTGTTCATGGC+CGG 0.553955 4.4:-85772149 None:intergenic
GCGATAACCATTGCAACTCC+AGG 0.558801 4.4:-85771436 None:intergenic
CAGCTTCAAAGAATCGGAAT+CGG 0.559892 4.4:+85772172 MS.gene052762:CDS
AAAACGGAGAGGGAAGCTGA+TGG 0.567952 4.4:-85772055 None:intergenic
TCACATGAAGGCTTTAGTCC+AGG 0.568348 4.4:-85771148 None:intergenic
CTTTAGTCCAGGTGCAATTG+CGG 0.570201 4.4:-85771137 None:intergenic
GGATACAGATGAATGTCGGA+TGG 0.573725 4.4:+85771395 MS.gene052762:CDS
TGCCACGATTGTGGAAATGA+TGG 0.574754 4.4:-85772206 None:intergenic
CTTGTAAGAGGACTTCCACC+AGG 0.576288 4.4:-85771505 None:intergenic
TTGACTGTATACTGTTGCAA+AGG 0.587730 4.4:-85771966 None:intergenic
GTTCCGCAGTATTTCCTCGT+AGG 0.589176 4.4:+85772316 MS.gene052762:CDS
GATACAGATGAATGTCGGAT+GGG 0.590289 4.4:+85771396 MS.gene052762:CDS
TTGATTGCGCTTGGAACTGG+CGG 0.595031 4.4:+85771229 MS.gene052762:CDS
CAGTAGAGACAGAATCCGAC+CGG 0.595827 4.4:+85771843 MS.gene052762:CDS
TGGTATAGACTTCAAATACC+TGG 0.596885 4.4:+85771487 MS.gene052762:CDS
CTCCATCATTTCCACAATCG+TGG 0.608133 4.4:+85772204 MS.gene052762:CDS
CCATAAGATCGACATAGGGA+TGG 0.610175 4.4:-85772290 None:intergenic
AAGTTCACCGGCCATGAACA+CGG 0.612897 4.4:+85772142 MS.gene052762:CDS
CAGCCATTAGTATCACATGA+AGG 0.621135 4.4:-85771160 None:intergenic
ACCGATATAAGTGAAAACTT+CGG 0.623785 4.4:-85772344 None:intergenic
TAGAGTGTCGAAAACGGAGA+GGG 0.623960 4.4:-85772065 None:intergenic
CTGCATTTCCAAGTCCGTAA+CGG 0.628403 4.4:-85770277 None:intergenic
ATTCCAGATAATATGAATAG+GGG 0.635841 4.4:+85772520 MS.gene052762:CDS
CCTTTCGCAAGAAAGTTCAC+CGG 0.638836 4.4:+85772130 MS.gene052762:CDS
GTTTGGATACAGATGAATGT+CGG 0.639388 4.4:+85771391 MS.gene052762:CDS
ATACAGATGAATGTCGGATG+GGG 0.656151 4.4:+85771397 MS.gene052762:CDS
AACACAATGGATCAACACAT+TGG 0.661215 4.4:+85772016 MS.gene052762:CDS
TGTGTTACAAGGCAACACAA+TGG 0.665398 4.4:+85772003 MS.gene052762:CDS
CTTGCCATAAGATCGACATA+GGG 0.668062 4.4:-85772294 None:intergenic
TATAGACTTCAAATACCTGG+TGG 0.669427 4.4:+85771490 MS.gene052762:CDS
GCTGCAGTTTGTCCTGACGT+CGG 0.674367 4.4:-85771187 None:intergenic
GTTGCCTTGTAACACAAACA+TGG 0.693293 4.4:-85771996 None:intergenic
CTATCAGTGATGCCCAAACG+GGG 0.694144 4.4:-85771943 None:intergenic
AAACTTCGGCAGCACCTACG+AGG 0.701293 4.4:-85772330 None:intergenic
TTAGAGTGTCGAAAACGGAG+AGG 0.710645 4.4:-85772066 None:intergenic
AAGATTTACCGAATCCATGG+AGG 0.715910 4.4:+85771870 MS.gene052762:CDS
GCACCAAAAGATGAAACACA+CGG 0.721405 4.4:-85771259 None:intergenic
GCACCTACGAGGAAATACTG+CGG 0.779487 4.4:-85772319 None:intergenic
CTGTATCCAAACCAACACCG+AGG 0.799571 4.4:-85771380 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATAAAGATAAATATAAAAA+TGG - chr4.4:85771683-85771702 None:intergenic 10.0%
!!! TTGTTAAAATGTTTTGATAA+AGG + chr4.4:85770459-85770478 MS.gene052762:intron 15.0%
!!! TTTTACTTCTCAATTAATAT+CGG + chr4.4:85771343-85771362 MS.gene052762:CDS 15.0%
!! TCACTTAAAAATATTGCATT+GGG + chr4.4:85772427-85772446 MS.gene052762:CDS 20.0%
!! TTCACTTAAAAATATTGCAT+TGG + chr4.4:85772426-85772445 MS.gene052762:CDS 20.0%
!!! ATGAAGTTTAGAATAAGAAA+AGG - chr4.4:85771725-85771744 None:intergenic 20.0%
!!! ATGTAGAATCTAAAATCAAA+GGG + chr4.4:85771611-85771630 MS.gene052762:CDS 20.0%
!!! TTACTTGAATTTCAAGTAAA+CGG - chr4.4:85770686-85770705 None:intergenic 20.0%
! ACAAAAAAGTGAATCATCTT+AGG + chr4.4:85772629-85772648 MS.gene052762:CDS 25.0%
! ACAAAAGTTACTACAAGAAA+TGG + chr4.4:85772484-85772503 MS.gene052762:CDS 25.0%
! ACATTAACAAGTTAATTGAC+AGG - chr4.4:85771071-85771090 None:intergenic 25.0%
! ACCGATGAAGAAAAATATAA+TGG - chr4.4:85771461-85771480 None:intergenic 25.0%
! ATAGAAGAGAAATTAAAGGA+GGG - chr4.4:85770865-85770884 None:intergenic 25.0%
! ATTCCAGATAATATGAATAG+GGG + chr4.4:85772520-85772539 MS.gene052762:CDS 25.0%
! CGATATAGAAGAGAAATTAA+AGG - chr4.4:85770869-85770888 None:intergenic 25.0%
! GAAGTAAAACCAATTGAAAA+AGG - chr4.4:85771332-85771351 None:intergenic 25.0%
! GATTCCAGATAATATGAATA+GGG + chr4.4:85772519-85772538 MS.gene052762:CDS 25.0%
! TATAGAAGAGAAATTAAAGG+AGG - chr4.4:85770866-85770885 None:intergenic 25.0%
!! GATGTAGAATCTAAAATCAA+AGG + chr4.4:85771610-85771629 MS.gene052762:CDS 25.0%
!! GCCATTATATTTTTCTTCAT+CGG + chr4.4:85771457-85771476 MS.gene052762:CDS 25.0%
!!! GTTTTTGAAGTACATGAAAA+TGG + chr4.4:85770929-85770948 MS.gene052762:intron 25.0%
AAACAAATTTCCCTGATTTC+AGG + chr4.4:85771804-85771823 MS.gene052762:intron 30.0%
AAGTTATTGTTGCAGCATTT+AGG + chr4.4:85771536-85771555 MS.gene052762:CDS 30.0%
ACCGATATAAGTGAAAACTT+CGG - chr4.4:85772347-85772366 None:intergenic 30.0%
ACTTGACAAATTCTTGTAAG+AGG - chr4.4:85771520-85771539 None:intergenic 30.0%
AGTTCAAAAGAATACACTGA+TGG - chr4.4:85770620-85770639 None:intergenic 30.0%
AGTTCATATTTAAACGTCTG+AGG + chr4.4:85770509-85770528 MS.gene052762:intron 30.0%
GACAATTCTATTCTACTTTG+AGG + chr4.4:85770953-85770972 MS.gene052762:intron 30.0%
GGATTCCAGATAATATGAAT+AGG + chr4.4:85772518-85772537 MS.gene052762:CDS 30.0%
TAAAAGATTTACCGAATCCA+TGG + chr4.4:85771867-85771886 MS.gene052762:CDS 30.0%
TAAAGAAGAGACTTATCATC+TGG - chr4.4:85771580-85771599 None:intergenic 30.0%
TTTCACTTATATCGGTCAAA+TGG + chr4.4:85772351-85772370 MS.gene052762:CDS 30.0%
! ATTTCAAGTAAACGGTTCAT+TGG - chr4.4:85770678-85770697 None:intergenic 30.0%
! CAAGTAGAGTGCTATAAAAA+GGG - chr4.4:85771212-85771231 None:intergenic 30.0%
! CATTTGTGTGTTTAAGTTTC+CGG - chr4.4:85771639-85771658 None:intergenic 30.0%
! GCTGATGGAATTTTGAATTT+TGG - chr4.4:85772043-85772062 None:intergenic 30.0%
! TCAAGTAGAGTGCTATAAAA+AGG - chr4.4:85771213-85771232 None:intergenic 30.0%
! TCTCATCGTTTTCATCAAAT+TGG - chr4.4:85771288-85771307 None:intergenic 30.0%
!! GATTCGGTAAATCTTTTATC+CGG - chr4.4:85771865-85771884 None:intergenic 30.0%
!! GTCATCTTGATTACTTTTAC+TGG + chr4.4:85772542-85772561 MS.gene052762:CDS 30.0%
!!! AGAAAAGCTCCTTTTTCAAT+TGG + chr4.4:85771320-85771339 MS.gene052762:CDS 30.0%
!!! GATCATAGTAGTTGTTTTTG+CGG - chr4.4:85772264-85772283 None:intergenic 30.0%
!!! TCTTAGCTCTAGTTTCATTT+TGG + chr4.4:85770991-85771010 MS.gene052762:intron 30.0%
!!! TGATTACTTTTACTGGCTTT+TGG + chr4.4:85772549-85772568 MS.gene052762:CDS 30.0%
!!! TTTTTAGCTGATGCATACTT+GGG + chr4.4:85770362-85770381 MS.gene052762:CDS 30.0%
AAATACTGTCACAACTTGGT+CGG + chr4.4:85770307-85770326 MS.gene052762:CDS 35.0%
AACACAATGGATCAACACAT+TGG + chr4.4:85772016-85772035 MS.gene052762:CDS 35.0%
AAGCCTTCATGTGATACTAA+TGG + chr4.4:85771157-85771176 MS.gene052762:CDS 35.0%
ACTACAAGAAATGGAAGTCT+TGG + chr4.4:85772493-85772512 MS.gene052762:CDS 35.0%
CAAGTATGCATCAGCTAAAA+AGG - chr4.4:85770363-85770382 None:intergenic 35.0%
GACATAGATACTTGAGAAAC+TGG - chr4.4:85770405-85770424 None:intergenic 35.0%
GCAACAGTATACAGTCAAAT+GGG + chr4.4:85771971-85771990 MS.gene052762:CDS 35.0%
GTTTGGATACAGATGAATGT+CGG + chr4.4:85771391-85771410 MS.gene052762:CDS 35.0%
TATAGACTTCAAATACCTGG+TGG + chr4.4:85771490-85771509 MS.gene052762:CDS 35.0%
TATCCAAACACCTGAAATCA+GGG - chr4.4:85771817-85771836 None:intergenic 35.0%
TGACCCCTATTCATATTATC+TGG - chr4.4:85772526-85772545 None:intergenic 35.0%
TGCAACAGTATACAGTCAAA+TGG + chr4.4:85771970-85771989 MS.gene052762:CDS 35.0%
TGGTATAGACTTCAAATACC+TGG + chr4.4:85771487-85771506 MS.gene052762:CDS 35.0%
TTATCCAAACACCTGAAATC+AGG - chr4.4:85771818-85771837 None:intergenic 35.0%
TTCACACAGCTTCAAAGAAT+CGG + chr4.4:85772166-85772185 MS.gene052762:CDS 35.0%
TTGACTGTATACTGTTGCAA+AGG - chr4.4:85771969-85771988 None:intergenic 35.0%
TTGCAGCATTTAGGAAACTT+GGG + chr4.4:85771545-85771564 MS.gene052762:CDS 35.0%
! AAACCGTGTGTTTCATCTTT+TGG + chr4.4:85771256-85771275 MS.gene052762:CDS 35.0%
! AATCTAAAATCAAAGGGAGC+CGG + chr4.4:85771617-85771636 MS.gene052762:CDS 35.0%
! AATGGAGTTCTTTTATGGTC+AGG + chr4.4:85772369-85772388 MS.gene052762:CDS 35.0%
! GCCGAAGTTTTCACTTATAT+CGG + chr4.4:85772343-85772362 MS.gene052762:CDS 35.0%
! GGTCAAATGGAGTTCTTTTA+TGG + chr4.4:85772364-85772383 MS.gene052762:CDS 35.0%
! TGATTTCAGGTGTTTGGATA+AGG + chr4.4:85771817-85771836 MS.gene052762:intron 35.0%
!!! CTTTTTAGCTGATGCATACT+TGG + chr4.4:85770361-85770380 MS.gene052762:CDS 35.0%
AACTATCTCGAAGACCGTTA+CGG + chr4.4:85770263-85770282 MS.gene052762:CDS 40.0%
AAGATTTACCGAATCCATGG+AGG + chr4.4:85771870-85771889 MS.gene052762:CDS 40.0%
AATACTGTCACAACTTGGTC+GGG + chr4.4:85770308-85770327 MS.gene052762:CDS 40.0%
ACACTCTAAGTGTCATCTTC+TGG + chr4.4:85772080-85772099 MS.gene052762:CDS 40.0%
ACTTGCCATAAGATCGACAT+AGG - chr4.4:85772298-85772317 None:intergenic 40.0%
ATACAGATGAATGTCGGATG+GGG + chr4.4:85771397-85771416 MS.gene052762:CDS 40.0%
ATGCATACTTGGGAAGATAC+TGG + chr4.4:85770372-85770391 MS.gene052762:CDS 40.0%
CAAGAAATGGAAGTCTTGGT+TGG + chr4.4:85772497-85772516 MS.gene052762:CDS 40.0%
CACTCTAAGTGTCATCTTCT+GGG + chr4.4:85772081-85772100 MS.gene052762:CDS 40.0%
CAGCCATTAGTATCACATGA+AGG - chr4.4:85771163-85771182 None:intergenic 40.0%
CAGCTTCAAAGAATCGGAAT+CGG + chr4.4:85772172-85772191 MS.gene052762:CDS 40.0%
CAGGTCATGAGTTAATTGAC+AGG - chr4.4:85771052-85771071 None:intergenic 40.0%
CGTTGTTTGTGTACTTTCCA+GGG + chr4.4:85771094-85771113 MS.gene052762:intron 40.0%
CTGCAAATACTGTCACAACT+TGG + chr4.4:85770303-85770322 MS.gene052762:CDS 40.0%
CTTGCCATAAGATCGACATA+GGG - chr4.4:85772297-85772316 None:intergenic 40.0%
GATACAGATGAATGTCGGAT+GGG + chr4.4:85771396-85771415 MS.gene052762:CDS 40.0%
GCACCAAAAGATGAAACACA+CGG - chr4.4:85771262-85771281 None:intergenic 40.0%
GGAACCATGTTTGTGTTACA+AGG + chr4.4:85771992-85772011 MS.gene052762:CDS 40.0%
GTTGCAGCATTTAGGAAACT+TGG + chr4.4:85771544-85771563 MS.gene052762:CDS 40.0%
GTTGCCTTGTAACACAAACA+TGG - chr4.4:85771999-85772018 None:intergenic 40.0%
TCGTTGTTTGTGTACTTTCC+AGG + chr4.4:85771093-85771112 MS.gene052762:intron 40.0%
TGTGTTACAAGGCAACACAA+TGG + chr4.4:85772003-85772022 MS.gene052762:CDS 40.0%
TGTTACATCACACCATTGCT+TGG + chr4.4:85770335-85770354 MS.gene052762:CDS 40.0%
TTTGTGTACTTTCCAGGGAA+TGG + chr4.4:85771099-85771118 MS.gene052762:intron 40.0%
! CGGTAAATCTTTTATCCGGT+CGG - chr4.4:85771861-85771880 None:intergenic 40.0%
! GTCTGAGGTTCATAGTCAAA+AGG + chr4.4:85770524-85770543 MS.gene052762:intron 40.0%
! TTTCCCTGATTTCAGGTGTT+TGG + chr4.4:85771811-85771830 MS.gene052762:intron 40.0%
! TTTTCTTCATCGGTCGTAGA+TGG + chr4.4:85771467-85771486 MS.gene052762:CDS 40.0%
!! ATGTTAAAAGTGCCATTCCC+TGG - chr4.4:85771114-85771133 None:intergenic 40.0%
!! GACACTTAGAGTGTCGAAAA+CGG - chr4.4:85772074-85772093 None:intergenic 40.0%
ATCATTTCCACAATCGTGGC+AGG + chr4.4:85772208-85772227 MS.gene052762:CDS 45.0%
CACAAACTTCTCACAGCATC+AGG - chr4.4:85772397-85772416 None:intergenic 45.0%
CCATAAGATCGACATAGGGA+TGG - chr4.4:85772293-85772312 None:intergenic 45.0%
CCATCCCTATGTCGATCTTA+TGG + chr4.4:85772290-85772309 MS.gene052762:CDS 45.0%
CCTTTCGCAAGAAAGTTCAC+CGG + chr4.4:85772130-85772149 MS.gene052762:CDS 45.0%
CGGTGAACTTTCTTGCGAAA+GGG - chr4.4:85772132-85772151 None:intergenic 45.0%
CTCCATCATTTCCACAATCG+TGG + chr4.4:85772204-85772223 MS.gene052762:CDS 45.0%
CTGCATTTCCAAGTCCGTAA+CGG - chr4.4:85770280-85770299 None:intergenic 45.0%
CTTTAGTCCAGGTGCAATTG+CGG - chr4.4:85771140-85771159 None:intergenic 45.0%
GAATTGAACTCTCGACAGAC+AGG - chr4.4:85770648-85770667 None:intergenic 45.0%
GCTAAAAAGGCTCCAAGCAA+TGG - chr4.4:85770350-85770369 None:intergenic 45.0%
GGATACAGATGAATGTCGGA+TGG + chr4.4:85771395-85771414 MS.gene052762:CDS 45.0%
TACTTGATTGCGCTTGGAAC+TGG + chr4.4:85771226-85771245 MS.gene052762:CDS 45.0%
TAGAATACCTGCCACGATTG+TGG - chr4.4:85772218-85772237 None:intergenic 45.0%
TCAAAGAATCGGAATCGGTC+TGG + chr4.4:85772177-85772196 MS.gene052762:CDS 45.0%
TGCCACGATTGTGGAAATGA+TGG - chr4.4:85772209-85772228 None:intergenic 45.0%
! ACATTTTCCGCAATTGCACC+TGG + chr4.4:85771130-85771149 MS.gene052762:CDS 45.0%
! TCACATGAAGGCTTTAGTCC+AGG - chr4.4:85771151-85771170 None:intergenic 45.0%
!! TAGAGTGTCGAAAACGGAGA+GGG - chr4.4:85772068-85772087 None:intergenic 45.0%
!! TGTTTTTGCGGACAATGTCG+AGG - chr4.4:85772252-85772271 None:intergenic 45.0%
!! TTAGAGTGTCGAAAACGGAG+AGG - chr4.4:85772069-85772088 None:intergenic 45.0%
AAAACGGAGAGGGAAGCTGA+TGG - chr4.4:85772058-85772077 None:intergenic 50.0%
AAGTGTCATCTTCTGGGTCC+CGG + chr4.4:85772087-85772106 MS.gene052762:CDS 50.0%
AAGTTCACCGGCCATGAACA+CGG + chr4.4:85772142-85772161 MS.gene052762:CDS 50.0%
AGATGAATGTCGGATGGGGA+TGG + chr4.4:85771401-85771420 MS.gene052762:CDS 50.0%
ATGAATGTCGGATGGGGATG+GGG + chr4.4:85771403-85771422 MS.gene052762:CDS 50.0%
CAGTAGAGACAGAATCCGAC+CGG + chr4.4:85771843-85771862 MS.gene052762:CDS 50.0%
CCGGTGAACTTTCTTGCGAA+AGG - chr4.4:85772133-85772152 None:intergenic 50.0%
CGTTCGTTTACTCCCCGTTT+GGG + chr4.4:85771931-85771950 MS.gene052762:CDS 50.0%
CTATCAGTGATGCCCAAACG+GGG - chr4.4:85771946-85771965 None:intergenic 50.0%
CTGTATCCAAACCAACACCG+AGG - chr4.4:85771383-85771402 None:intergenic 50.0%
CTTGTAAGAGGACTTCCACC+AGG - chr4.4:85771508-85771527 None:intergenic 50.0%
GATGAATGTCGGATGGGGAT+GGG + chr4.4:85771402-85771421 MS.gene052762:CDS 50.0%
GCACCTACGAGGAAATACTG+CGG - chr4.4:85772322-85772341 None:intergenic 50.0%
GCACTCTACTTGATTGCGCT+TGG + chr4.4:85771220-85771239 MS.gene052762:CDS 50.0%
GCGATAACCATTGCAACTCC+AGG - chr4.4:85771439-85771458 None:intergenic 50.0%
GCTATCAGTGATGCCCAAAC+GGG - chr4.4:85771947-85771966 None:intergenic 50.0%
GCTGTGTGAATCCGTGTTCA+TGG - chr4.4:85772156-85772175 None:intergenic 50.0%
GGCTATCAGTGATGCCCAAA+CGG - chr4.4:85771948-85771967 None:intergenic 50.0%
GTTCCGCAGTATTTCCTCGT+AGG + chr4.4:85772316-85772335 MS.gene052762:CDS 50.0%
TCGTTCGTTTACTCCCCGTT+TGG + chr4.4:85771930-85771949 MS.gene052762:CDS 50.0%
TGTGAATCCGTGTTCATGGC+CGG - chr4.4:85772152-85772171 None:intergenic 50.0%
TTGATTGCGCTTGGAACTGG+CGG + chr4.4:85771229-85771248 MS.gene052762:CDS 50.0%
TTGCGAAAGGGACGATGAGA+CGG - chr4.4:85772120-85772139 None:intergenic 50.0%
! ACTCATTGCTTCCTCGGTGT+TGG + chr4.4:85771369-85771388 MS.gene052762:CDS 50.0%
! TTTTGCGGACAATGTCGAGG+CGG - chr4.4:85772249-85772268 None:intergenic 50.0%
!! TTGCTTCCTCGGTGTTGGTT+TGG + chr4.4:85771374-85771393 MS.gene052762:CDS 50.0%
AAACTTCGGCAGCACCTACG+AGG - chr4.4:85772333-85772352 None:intergenic 55.0%
ACGATGAGACGGTCGTAGAC+CGG - chr4.4:85772109-85772128 None:intergenic 55.0%
CAGTTTGTCCTGACGTCGGA+TGG - chr4.4:85771186-85771205 None:intergenic 55.0%
CGGTGCACTCATTGCTTCCT+CGG + chr4.4:85771363-85771382 MS.gene052762:CDS 55.0%
CTCGAAGACCGTTACGGACT+TGG + chr4.4:85770269-85770288 MS.gene052762:CDS 55.0%
GCTGCAGTTTGTCCTGACGT+CGG - chr4.4:85771190-85771209 None:intergenic 55.0%
GTGCAGAGCCTCCATGGATT+CGG - chr4.4:85771881-85771900 None:intergenic 55.0%
GTTACTGTGCAGAGCCTCCA+TGG - chr4.4:85771887-85771906 None:intergenic 55.0%
! TGGAGTGCCTGGAGTTGCAA+TGG + chr4.4:85771429-85771448 MS.gene052762:CDS 55.0%
AATGGCTGCCATCCGACGTC+AGG + chr4.4:85771175-85771194 MS.gene052762:CDS 60.0%
CGATGAGACGGTCGTAGACC+GGG - chr4.4:85772108-85772127 None:intergenic 60.0%
! GTCGGATGGGGATGGGGTTT+TGG + chr4.4:85771409-85771428 MS.gene052762:CDS 60.0%
!!! GGATGGGGTTTTGGAGTGCC+TGG + chr4.4:85771418-85771437 MS.gene052762:CDS 60.0%
GCGGACAATGTCGAGGCGGA+CGG - chr4.4:85772245-85772264 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 85770245 85772654 85770245 ID=MS.gene052762
chr4.4 mRNA 85770245 85772654 85770245 ID=MS.gene052762.t1;Parent=MS.gene052762
chr4.4 exon 85770245 85770427 85770245 ID=MS.gene052762.t1.exon1;Parent=MS.gene052762.t1
chr4.4 CDS 85770245 85770427 85770245 ID=cds.MS.gene052762.t1;Parent=MS.gene052762.t1
chr4.4 exon 85771115 85771665 85771115 ID=MS.gene052762.t1.exon2;Parent=MS.gene052762.t1
chr4.4 CDS 85771115 85771665 85771115 ID=cds.MS.gene052762.t1;Parent=MS.gene052762.t1
chr4.4 exon 85771826 85772654 85771826 ID=MS.gene052762.t1.exon3;Parent=MS.gene052762.t1
chr4.4 CDS 85771826 85772654 85771826 ID=cds.MS.gene052762.t1;Parent=MS.gene052762.t1
Gene Sequence

>MS.gene052762

ATGAGTACAAACTTGGTGAACTATCTCGAAGACCGTTACGGACTTGGAAATGCAGCTGCTGCAAATACTGTCACAACTTGGTCGGGAACATGTTACATCACACCATTGCTTGGAGCCTTTTTAGCTGATGCATACTTGGGAAGATACTGGACAATTGCCAGTTTCTCAAGTATCTATGTCATTGTAAGCTCATTTTAAGATAAGATTTGCTTTTTTGTTAAAATGTTTTGATAAAGGCGTTTAATATGCATTCTTTTGAATATCAGTTCATATTTAAACGTCTGAGGTTCATAGTCAAAAGGATCAATACTTTTAATTAACAATACGTTTCTTTTTTAATCAAGTAAAATATTGTTAATTTTGTCTATTTTTCCATCAGTGTATTCTTTTGAACTGAAGTCCTGTCTGTCGAGAGTTCAATTCAAATTAGCCAATGAACCGTTTACTTGAAATTCAAGTAACTGAAATACTGAATTTTCTGTTTTAGTTAGATAAGCAGTTATTTTCTGTAATGTGTGTGATGTCTGTGAGTCATCATCGATCATATGTGTATAAATACTTGATGTGAATTATACTCTCGACAACTAGTGATTTTCTCTCAATTTTCTCTATTCTTTCCCTCCTTTAATTTCTCTTCTATATCGATAAGCAAAGTGCGTGTGTGTGCAAGAAAAACATCAGTGAGTTTTTGAAGTACATGAAAATGGTGACAATTCTATTCTACTTTGAGGACAGTATAGATTTAATCTTAGCTCTAGTTTCATTTTGGAATCTTCAGTTTACTTCTAAACATTTACTGCATGACCTGTCAATTAACTCATGACCTGTCAATTAACTTGTTAATGTAGTCGTTGTTTGTGTACTTTCCAGGGAATGGCACTTTTAACATTTTCCGCAATTGCACCTGGACTAAAGCCTTCATGTGATACTAATGGCTGCCATCCGACGTCAGGACAAACTGCAGCCCTTTTTATAGCACTCTACTTGATTGCGCTTGGAACTGGCGGTATCAAACCGTGTGTTTCATCTTTTGGTGCTGACCAATTTGATGAAAACGATGAGACTGAGAGAAAAAAGAAAAGCTCCTTTTTCAATTGGTTTTACTTCTCAATTAATATCGGTGCACTCATTGCTTCCTCGGTGTTGGTTTGGATACAGATGAATGTCGGATGGGGATGGGGTTTTGGAGTGCCTGGAGTTGCAATGGTTATCGCCATTATATTTTTCTTCATCGGTCGTAGATGGTATAGACTTCAAATACCTGGTGGAAGTCCTCTTACAAGAATTTGTCAAGTTATTGTTGCAGCATTTAGGAAACTTGGGCAACAAGTTCCAGATGATAAGTCTCTTCTTTATGAGACTACTGATGTAGAATCTAAAATCAAAGGGAGCCGGAAACTTAAACACACAAATGAATTGAAGTAAGATATCAAAACCATTTTTATATTTATCTTTATGAGACTACTCGTTCGCATGTCCTTTTCTTATTCTAAACTTCATAATTCATTAACGCTAAAGTTTGTTTTACATTCTTATATTACATTATAATAATAACTAACAAACAAATTTCCCTGATTTCAGGTGTTTGGATAAGGCAGCAGTAGAGACAGAATCCGACCGGATAAAAGATTTACCGAATCCATGGAGGCTCTGCACAGTAACACAAGTCGAAGAACTCAAATCAATCGTTCGTTTACTCCCCGTTTGGGCATCACTGATAGCCTTTGCAACAGTATACAGTCAAATGGGAACCATGTTTGTGTTACAAGGCAACACAATGGATCAACACATTGGTCCAAAATTCAAAATTCCATCAGCTTCCCTCTCCGTTTTCGACACTCTAAGTGTCATCTTCTGGGTCCCGGTCTACGACCGTCTCATCGTCCCTTTCGCAAGAAAGTTCACCGGCCATGAACACGGATTCACACAGCTTCAAAGAATCGGAATCGGTCTGGTCATCTCCATCATTTCCACAATCGTGGCAGGTATTCTAGAAGCCGTCCGCCTCGACATTGTCCGCAAAAACAACTACTATGATCTTGAAACCATCCCTATGTCGATCTTATGGCAAGTTCCGCAGTATTTCCTCGTAGGTGCTGCCGAAGTTTTCACTTATATCGGTCAAATGGAGTTCTTTTATGGTCAGGCACCTGATGCTGTGAGAAGTTTGTGTGCTGCACTTTCACTTAAAAATATTGCATTGGGAAATTATGTGAGTACATTGCTTGTTACTATTGTCACAAAAGTTACTACAAGAAATGGAAGTCTTGGTTGGATTCCAGATAATATGAATAGGGGTCATCTTGATTACTTTTACTGGCTTTTGGCAATTCTTAGTTTGATCAACTTCATTGTGTATCTACAGATTGCTAAGAGATATACATACAAAAAAGTGAATCATCTTAGGTGA

Protein sequence

>MS.gene052762.t1

MSTNLVNYLEDRYGLGNAAAANTVTTWSGTCYITPLLGAFLADAYLGRYWTIASFSSIYVIGMALLTFSAIAPGLKPSCDTNGCHPTSGQTAALFIALYLIALGTGGIKPCVSSFGADQFDENDETERKKKSSFFNWFYFSINIGALIASSVLVWIQMNVGWGWGFGVPGVAMVIAIIFFFIGRRWYRLQIPGGSPLTRICQVIVAAFRKLGQQVPDDKSLLYETTDVESKIKGSRKLKHTNELKCLDKAAVETESDRIKDLPNPWRLCTVTQVEELKSIVRLLPVWASLIAFATVYSQMGTMFVLQGNTMDQHIGPKFKIPSASLSVFDTLSVIFWVPVYDRLIVPFARKFTGHEHGFTQLQRIGIGLVISIISTIVAGILEAVRLDIVRKNNYYDLETIPMSILWQVPQYFLVGAAEVFTYIGQMEFFYGQAPDAVRSLCAALSLKNIALGNYVSTLLVTIVTKVTTRNGSLGWIPDNMNRGHLDYFYWLLAILSLINFIVYLQIAKRYTYKKVNHLR