Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07939.t1 | XP_013458000.1 | 92.6 | 326 | 17 | 1 | 28 | 346 | 66 | 391 | 2.30E-173 | 618.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07939.t1 | Q9C907 | 73.5 | 325 | 79 | 1 | 28 | 345 | 65 | 389 | 3.7e-140 | 499.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07939.t1 | A0A072URQ0 | 92.6 | 326 | 17 | 1 | 28 | 346 | 66 | 391 | 1.6e-173 | 618.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049993 | MS.gene07939 | 0.809863 | 1.53E-50 | -1.69E-46 |
| MS.gene050315 | MS.gene07939 | 0.847591 | 1.05E-59 | -1.69E-46 |
| MS.gene050426 | MS.gene07939 | -0.83962 | 1.42E-57 | -1.69E-46 |
| MS.gene050670 | MS.gene07939 | 0.826474 | 2.66E-54 | -1.69E-46 |
| MS.gene051208 | MS.gene07939 | 0.809535 | 1.80E-50 | -1.69E-46 |
| MS.gene051525 | MS.gene07939 | 0.84283 | 2.04E-58 | -1.69E-46 |
| MS.gene051582 | MS.gene07939 | 0.861736 | 8.32E-64 | -1.69E-46 |
| MS.gene052011 | MS.gene07939 | -0.855598 | 5.66E-62 | -1.69E-46 |
| MS.gene052134 | MS.gene07939 | 0.808657 | 2.78E-50 | -1.69E-46 |
| MS.gene052135 | MS.gene07939 | 0.817224 | 3.68E-52 | -1.69E-46 |
| MS.gene052253 | MS.gene07939 | 0.827572 | 1.45E-54 | -1.69E-46 |
| MS.gene052762 | MS.gene07939 | 0.800926 | 1.15E-48 | -1.69E-46 |
| MS.gene052982 | MS.gene07939 | 0.811341 | 7.35E-51 | -1.69E-46 |
| MS.gene053330 | MS.gene07939 | 0.829637 | 4.61E-55 | -1.69E-46 |
| MS.gene054102 | MS.gene07939 | 0.801136 | 1.04E-48 | -1.69E-46 |
| MS.gene054183 | MS.gene07939 | 0.824628 | 7.28E-54 | -1.69E-46 |
| MS.gene054918 | MS.gene07939 | 0.846783 | 1.75E-59 | -1.69E-46 |
| MS.gene055116 | MS.gene07939 | 0.819086 | 1.40E-52 | -1.69E-46 |
| MS.gene055369 | MS.gene07939 | 0.834753 | 2.50E-56 | -1.69E-46 |
| MS.gene055370 | MS.gene07939 | 0.818023 | 2.43E-52 | -1.69E-46 |
| MS.gene05553 | MS.gene07939 | 0.821279 | 4.39E-53 | -1.69E-46 |
| MS.gene05594 | MS.gene07939 | 0.832813 | 7.63E-56 | -1.69E-46 |
| MS.gene056337 | MS.gene07939 | 0.82371 | 1.20E-53 | -1.69E-46 |
| MS.gene056407 | MS.gene07939 | 0.818972 | 1.48E-52 | -1.69E-46 |
| MS.gene056514 | MS.gene07939 | 0.816577 | 5.15E-52 | -1.69E-46 |
| MS.gene056633 | MS.gene07939 | 0.804156 | 2.47E-49 | -1.69E-46 |
| MS.gene056723 | MS.gene07939 | 0.819424 | 1.17E-52 | -1.69E-46 |
| MS.gene057124 | MS.gene07939 | 0.801724 | 7.87E-49 | -1.69E-46 |
| MS.gene057476 | MS.gene07939 | 0.804621 | 1.98E-49 | -1.69E-46 |
| MS.gene057888 | MS.gene07939 | 0.811631 | 6.36E-51 | -1.69E-46 |
| MS.gene058142 | MS.gene07939 | 0.806768 | 7.01E-50 | -1.69E-46 |
| MS.gene058276 | MS.gene07939 | 0.81997 | 8.78E-53 | -1.69E-46 |
| MS.gene058700 | MS.gene07939 | 0.808775 | 2.62E-50 | -1.69E-46 |
| MS.gene058746 | MS.gene07939 | 0.829034 | 6.45E-55 | -1.69E-46 |
| MS.gene05886 | MS.gene07939 | 0.807374 | 5.22E-50 | -1.69E-46 |
| MS.gene059247 | MS.gene07939 | 0.84842 | 6.20E-60 | -1.69E-46 |
| MS.gene059420 | MS.gene07939 | 0.842806 | 2.06E-58 | -1.69E-46 |
| MS.gene059462 | MS.gene07939 | 0.804428 | 2.17E-49 | -1.69E-46 |
| MS.gene060403 | MS.gene07939 | 0.833589 | 4.89E-56 | -1.69E-46 |
| MS.gene061114 | MS.gene07939 | -0.814227 | 1.72E-51 | -1.69E-46 |
| MS.gene061154 | MS.gene07939 | 0.829644 | 4.59E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07939.t1 | MTR_4g109600 | 92.638 | 326 | 17 | 1 | 28 | 346 | 66 | 391 | 0.0 | 621 |
| MS.gene07939.t1 | MTR_4g109600 | 92.913 | 127 | 9 | 0 | 28 | 154 | 66 | 192 | 7.24e-79 | 244 |
| MS.gene07939.t1 | MTR_4g109600 | 76.282 | 156 | 29 | 2 | 199 | 346 | 163 | 318 | 9.52e-78 | 241 |
| MS.gene07939.t1 | MTR_5g094230 | 23.333 | 300 | 202 | 9 | 29 | 319 | 377 | 657 | 2.19e-12 | 68.6 |
| MS.gene07939.t1 | MTR_5g094230 | 23.333 | 300 | 202 | 9 | 29 | 319 | 377 | 657 | 4.06e-12 | 67.8 |
| MS.gene07939.t1 | MTR_2g450160 | 26.786 | 280 | 174 | 12 | 45 | 316 | 240 | 496 | 7.89e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07939.t1 | AT1G74210 | 73.538 | 325 | 79 | 1 | 28 | 345 | 65 | 389 | 1.37e-179 | 503 |
| MS.gene07939.t1 | AT5G08030 | 74.837 | 306 | 70 | 1 | 28 | 326 | 65 | 370 | 6.05e-172 | 483 |
| MS.gene07939.t1 | AT5G08030 | 75.248 | 303 | 68 | 1 | 28 | 323 | 80 | 382 | 1.10e-171 | 483 |
| MS.gene07939.t1 | AT1G66970 | 23.793 | 290 | 196 | 9 | 29 | 310 | 410 | 682 | 1.93e-13 | 72.0 |
| MS.gene07939.t1 | AT1G66970 | 23.793 | 290 | 196 | 9 | 29 | 310 | 388 | 660 | 2.09e-13 | 71.6 |
| MS.gene07939.t1 | AT1G66970 | 23.183 | 289 | 199 | 8 | 29 | 310 | 194 | 466 | 2.91e-13 | 71.2 |
| MS.gene07939.t1 | AT4G26690 | 22.414 | 290 | 199 | 7 | 29 | 310 | 382 | 653 | 1.07e-12 | 69.7 |
| MS.gene07939.t1 | AT5G55480 | 20.323 | 310 | 225 | 7 | 25 | 327 | 383 | 677 | 7.48e-12 | 67.0 |
| MS.gene07939.t1 | AT3G20520 | 20.328 | 305 | 212 | 9 | 29 | 319 | 359 | 646 | 3.76e-11 | 64.7 |
Find 74 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCCTATGTGCAACGTTATA+TGG | 0.136452 | 6.4:-12254856 | None:intergenic |
| TGCAGTTGATTTCACATTAA+AGG | 0.140506 | 6.4:+12255698 | MS.gene07939:intron |
| TGAATCAGAGGTTCTGCTTT+AGG | 0.244144 | 6.4:+12255739 | MS.gene07939:CDS |
| GTTGAAACACTTCGGAAATA+TGG | 0.255128 | 6.4:+12256254 | MS.gene07939:CDS |
| TGATTACTGGATCAACAAAA+TGG | 0.274727 | 6.4:+12256966 | MS.gene07939:CDS |
| GAATCAGAGGTTCTGCTTTA+GGG | 0.329665 | 6.4:+12255740 | MS.gene07939:CDS |
| ACATATAAGAACACCATCTT+TGG | 0.329743 | 6.4:-12255086 | None:intergenic |
| TCTTGTCATCTTGACGGTTA+GGG | 0.364460 | 6.4:-12257050 | None:intergenic |
| GTCTTGTCATCTTGACGGTT+AGG | 0.371938 | 6.4:-12257051 | None:intergenic |
| TTCTCATTTCTGTACGTGTA+TGG | 0.378212 | 6.4:-12256898 | None:intergenic |
| CTTACAAGGAGTATGATTAC+TGG | 0.378731 | 6.4:+12256953 | MS.gene07939:CDS |
| ATGATTATGTGCAGTCATAT+TGG | 0.381861 | 6.4:+12256548 | MS.gene07939:intron |
| CTCCTTCGGATCTTGTTGCC+AGG | 0.391688 | 6.4:+12256653 | MS.gene07939:CDS |
| CCCATATAACGTTGCACATA+GGG | 0.394571 | 6.4:+12254855 | MS.gene07939:CDS |
| TATGCCTCACGAGTTTCTTC+AGG | 0.396347 | 6.4:-12254895 | None:intergenic |
| GATACTATAGTTGTAGGAAT+TGG | 0.397367 | 6.4:+12256583 | MS.gene07939:CDS |
| GATATATACACAAGTGAAGT+TGG | 0.401531 | 6.4:-12256341 | None:intergenic |
| TGATTATGTGCAGTCATATT+GGG | 0.403241 | 6.4:+12256549 | MS.gene07939:intron |
| ATCAACAAAATGGGAATTGA+TGG | 0.404261 | 6.4:+12256976 | MS.gene07939:CDS |
| ACATCTGATACTATAGTTGT+AGG | 0.408015 | 6.4:+12256577 | MS.gene07939:CDS |
| GATATAAATAACAGGTGAAA+TGG | 0.409069 | 6.4:+12256201 | MS.gene07939:intron |
| TTCAACACAAGACACTAATC+AGG | 0.419403 | 6.4:+12256412 | MS.gene07939:CDS |
| TTGGATGCACCCAGAGTTGT+TGG | 0.424638 | 6.4:+12255988 | MS.gene07939:CDS |
| CCCTATGTGCAACGTTATAT+GGG | 0.427804 | 6.4:-12254855 | None:intergenic |
| TTTAGGGATCAACAGTTTAA+CGG | 0.438221 | 6.4:+12255756 | MS.gene07939:CDS |
| CAAGTATTTGACGACTCCTT+CGG | 0.443084 | 6.4:+12256639 | MS.gene07939:CDS |
| TCCCAGTGAAATCTGTAAAC+AGG | 0.445980 | 6.4:-12256999 | None:intergenic |
| GTTGCACATAGGGGCTCAAA+TGG | 0.451850 | 6.4:+12254865 | MS.gene07939:CDS |
| AGGATATATTCCAACAACTC+TGG | 0.460634 | 6.4:-12255998 | None:intergenic |
| CAGTAATCATACTCCTTGTA+AGG | 0.464985 | 6.4:-12256952 | None:intergenic |
| GAAGAGGCTGCTTACTTCCA+TGG | 0.474342 | 6.4:-12254822 | None:intergenic |
| ATGCAGTCTTGTCATCTTGA+CGG | 0.475282 | 6.4:-12257056 | None:intergenic |
| GTCGGACGGCAAACGATTTG+AGG | 0.480583 | 6.4:+12256223 | MS.gene07939:CDS |
| AGAGTTCATTACCATAGCAT+TGG | 0.485013 | 6.4:+12255969 | MS.gene07939:CDS |
| GATTACTGGATCAACAAAAT+GGG | 0.486674 | 6.4:+12256967 | MS.gene07939:CDS |
| ACATGCTGATTGATAAGTAC+TGG | 0.490440 | 6.4:-12256033 | None:intergenic |
| ACGGCAAACGATTTGAGGAC+AGG | 0.499996 | 6.4:+12256228 | MS.gene07939:CDS |
| GGCCTGTTTACAGATTTCAC+TGG | 0.506585 | 6.4:+12256997 | MS.gene07939:CDS |
| GATATATTATCTTCCAAAGA+TGG | 0.509816 | 6.4:+12255073 | MS.gene07939:CDS |
| TGTGTATATATCAAATCAAA+CGG | 0.510034 | 6.4:+12256352 | MS.gene07939:CDS |
| TGTAGGAATTGGACCTTGGA+AGG | 0.521665 | 6.4:+12256594 | MS.gene07939:CDS |
| GGATATATTCCAACAACTCT+GGG | 0.526903 | 6.4:-12255997 | None:intergenic |
| ACTTCGGAAATATGGATACA+AGG | 0.529530 | 6.4:+12256262 | MS.gene07939:CDS |
| TCCTTCGGATCTTGTTGCCA+GGG | 0.533302 | 6.4:+12256654 | MS.gene07939:CDS |
| CTTTAGTCAAGATCCTTACA+AGG | 0.536799 | 6.4:+12256939 | MS.gene07939:CDS |
| CTTGTCATCTTGACGGTTAG+GGG | 0.536985 | 6.4:-12257049 | None:intergenic |
| GCCCATATAACGTTGCACAT+AGG | 0.541427 | 6.4:+12254854 | MS.gene07939:CDS |
| GCCTGTTTACAGATTTCACT+GGG | 0.542364 | 6.4:+12256998 | MS.gene07939:CDS |
| GTCAAATACTTGTTAACCAC+AGG | 0.545080 | 6.4:-12256628 | None:intergenic |
| GTTCATACCTGTCAAAACAT+TGG | 0.548979 | 6.4:+12256285 | MS.gene07939:CDS |
| GGCACATGCTCATAATCTGC+AGG | 0.551055 | 6.4:+12256675 | MS.gene07939:CDS |
| AAAAGAACATATGAAGTCGA+AGG | 0.561446 | 6.4:+12255172 | MS.gene07939:CDS |
| TTGCAGAGAGCTATTGAGGA+AGG | 0.565109 | 6.4:+12255031 | MS.gene07939:intron |
| AAAGAACATATGAAGTCGAA+GGG | 0.565876 | 6.4:+12255173 | MS.gene07939:CDS |
| TAAATAACAGGTGAAATGGT+CGG | 0.572543 | 6.4:+12256205 | MS.gene07939:intron |
| TCTGGGTGCATCCAATGCTA+TGG | 0.574074 | 6.4:-12255980 | None:intergenic |
| ACAGGTTTGTTGAAACACTT+CGG | 0.580004 | 6.4:+12256246 | MS.gene07939:CDS |
| CAGATTATGAGCATGTGCCC+TGG | 0.581110 | 6.4:-12256671 | None:intergenic |
| GTCGAAGGGGTCAATCACAC+TGG | 0.590461 | 6.4:+12255187 | MS.gene07939:CDS |
| GCAAATGACTGTATAAATGC+AGG | 0.604021 | 6.4:-12256317 | None:intergenic |
| TATGGGCGAAAAGTTTGAAG+AGG | 0.612743 | 6.4:-12254838 | None:intergenic |
| TAAAGTTGAAATGCAAACAC+TGG | 0.613111 | 6.4:-12256921 | None:intergenic |
| TAGTTGTAGGAATTGGACCT+TGG | 0.613112 | 6.4:+12256590 | MS.gene07939:CDS |
| AGTCGCTGAGGGTGAATCAG+AGG | 0.615291 | 6.4:+12255727 | MS.gene07939:CDS |
| AAAGGAATTAAAGTCGCTGA+GGG | 0.619575 | 6.4:+12255716 | MS.gene07939:CDS |
| TAAAGGAATTAAAGTCGCTG+AGG | 0.621868 | 6.4:+12255715 | MS.gene07939:CDS |
| CCATATAACGTTGCACATAG+GGG | 0.625643 | 6.4:+12254856 | MS.gene07939:CDS |
| CTTCGGAAATATGGATACAA+GGG | 0.630595 | 6.4:+12256263 | MS.gene07939:CDS |
| GAAGGATACTATAGTACCTG+TGG | 0.635202 | 6.4:+12256612 | MS.gene07939:CDS |
| GGTACTATAGTATCCTTCCA+AGG | 0.636568 | 6.4:-12256607 | None:intergenic |
| TAACAGGTGAAATGGTCGGA+CGG | 0.639574 | 6.4:+12256209 | MS.gene07939:intron |
| GCCCTGGCAACAAGATCCGA+AGG | 0.642209 | 6.4:-12256655 | None:intergenic |
| TATTATCAAGAATAAAGTCG+TGG | 0.657370 | 6.4:-12255111 | None:intergenic |
| AAGAACATATGAAGTCGAAG+GGG | 0.698335 | 6.4:+12255174 | MS.gene07939:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTAAAAATATTATAATT+TGG | - | chr6.4:12254996-12255015 | None:intergenic | 0.0% |
| !! | ATTAAATTGATATAAATAAC+AGG | + | chr6.4:12256193-12256212 | MS.gene07939:intron | 10.0% |
| !!! | AAACGTATTTCTTAATTTTA+GGG | + | chr6.4:12255511-12255530 | MS.gene07939:intron | 15.0% |
| !!! | TAAACGTATTTCTTAATTTT+AGG | + | chr6.4:12255510-12255529 | MS.gene07939:intron | 15.0% |
| !! | AATGGTAACTCAATAAATTA+AGG | - | chr6.4:12255480-12255499 | None:intergenic | 20.0% |
| !! | ATTTCCTTCGTAAAATATAT+TGG | + | chr6.4:12255259-12255278 | MS.gene07939:intron | 20.0% |
| !! | CAACATTGTATAACATTAAA+CGG | - | chr6.4:12256474-12256493 | None:intergenic | 20.0% |
| !! | TGTGTATATATCAAATCAAA+CGG | + | chr6.4:12256352-12256371 | MS.gene07939:CDS | 20.0% |
| !! | TTTCCTTCGTAAAATATATT+GGG | + | chr6.4:12255260-12255279 | MS.gene07939:intron | 20.0% |
| !!! | CATTACAGTAATATTTTGTT+AGG | - | chr6.4:12256531-12256550 | None:intergenic | 20.0% |
| !!! | TCATCGATTAAAAAAATCTT+AGG | - | chr6.4:12256383-12256402 | None:intergenic | 20.0% |
| ! | AAAGAATGGAATATTGTTTC+TGG | - | chr6.4:12255608-12255627 | None:intergenic | 25.0% |
| ! | ATCTTATTGTATGAATGTGA+TGG | + | chr6.4:12256147-12256166 | MS.gene07939:intron | 25.0% |
| ! | ATTCATACAATAAGATTGGA+GGG | - | chr6.4:12256143-12256162 | None:intergenic | 25.0% |
| ! | GATATAAATAACAGGTGAAA+TGG | + | chr6.4:12256201-12256220 | MS.gene07939:intron | 25.0% |
| ! | GATATATTATCTTCCAAAGA+TGG | + | chr6.4:12255073-12255092 | MS.gene07939:CDS | 25.0% |
| ! | TAATCATATGAAGAGAAACA+AGG | - | chr6.4:12256719-12256738 | None:intergenic | 25.0% |
| ! | TACGTTTATACAAAGCAAAA+TGG | - | chr6.4:12255498-12255517 | None:intergenic | 25.0% |
| ! | TATTATCAAGAATAAAGTCG+TGG | - | chr6.4:12255114-12255133 | None:intergenic | 25.0% |
| ! | TCACATTCATACAATAAGAT+TGG | - | chr6.4:12256147-12256166 | None:intergenic | 25.0% |
| !! | AGCAATTTTATGTAATAGCT+CGG | - | chr6.4:12257082-12257101 | None:intergenic | 25.0% |
| !! | AGTAATATTTTGTTAGGCTT+TGG | - | chr6.4:12256525-12256544 | None:intergenic | 25.0% |
| !!! | TGAACCATTTTAAAATCTGA+CGG | - | chr6.4:12255819-12255838 | None:intergenic | 25.0% |
| AAAAGAACATATGAAGTCGA+AGG | + | chr6.4:12255172-12255191 | MS.gene07939:CDS | 30.0% | |
| AAAGAACATATGAAGTCGAA+GGG | + | chr6.4:12255173-12255192 | MS.gene07939:CDS | 30.0% | |
| ACATATAAGAACACCATCTT+TGG | - | chr6.4:12255089-12255108 | None:intergenic | 30.0% | |
| ACATCTGATACTATAGTTGT+AGG | + | chr6.4:12256577-12256596 | MS.gene07939:CDS | 30.0% | |
| ACATGTATAAGCGAAGAAAA+GGG | - | chr6.4:12255787-12255806 | None:intergenic | 30.0% | |
| ATCAACAAAATGGGAATTGA+TGG | + | chr6.4:12256976-12256995 | MS.gene07939:CDS | 30.0% | |
| ATGATTATGTGCAGTCATAT+TGG | + | chr6.4:12256548-12256567 | MS.gene07939:intron | 30.0% | |
| CAGATGTAAAGTAATGAGAA+AGG | - | chr6.4:12254960-12254979 | None:intergenic | 30.0% | |
| CATTCATACAATAAGATTGG+AGG | - | chr6.4:12256144-12256163 | None:intergenic | 30.0% | |
| CTTAGGCATCTTAACAAATT+TGG | + | chr6.4:12255413-12255432 | MS.gene07939:intron | 30.0% | |
| CTTGAAAGTGATGAAAAAAC+TGG | - | chr6.4:12255634-12255653 | None:intergenic | 30.0% | |
| GAAAAAACTGGATGAAAGAA+TGG | - | chr6.4:12255622-12255641 | None:intergenic | 30.0% | |
| GATACTATAGTTGTAGGAAT+TGG | + | chr6.4:12256583-12256602 | MS.gene07939:CDS | 30.0% | |
| GATATATACACAAGTGAAGT+TGG | - | chr6.4:12256344-12256363 | None:intergenic | 30.0% | |
| GATTACTGGATCAACAAAAT+GGG | + | chr6.4:12256967-12256986 | MS.gene07939:CDS | 30.0% | |
| TAAAGTTGAAATGCAAACAC+TGG | - | chr6.4:12256924-12256943 | None:intergenic | 30.0% | |
| TAAATAACAGGTGAAATGGT+CGG | + | chr6.4:12256205-12256224 | MS.gene07939:intron | 30.0% | |
| TAAGTCTATTGCCTTATCTT+TGG | + | chr6.4:12255909-12255928 | MS.gene07939:intron | 30.0% | |
| TGAAAGAGATTCCAAAGATA+AGG | - | chr6.4:12255923-12255942 | None:intergenic | 30.0% | |
| TGATTACTGGATCAACAAAA+TGG | + | chr6.4:12256966-12256985 | MS.gene07939:CDS | 30.0% | |
| TGATTATGTGCAGTCATATT+GGG | + | chr6.4:12256549-12256568 | MS.gene07939:intron | 30.0% | |
| TTTAGGGATCAACAGTTTAA+CGG | + | chr6.4:12255756-12255775 | MS.gene07939:CDS | 30.0% | |
| ! | TGCAGTTGATTTCACATTAA+AGG | + | chr6.4:12255698-12255717 | MS.gene07939:intron | 30.0% |
| !! | AATTTGTTAAGATGCCTAAG+AGG | - | chr6.4:12255413-12255432 | None:intergenic | 30.0% |
| !! | GGTTCAAAGATCATTTTTAC+TGG | + | chr6.4:12255833-12255852 | MS.gene07939:intron | 30.0% |
| !! | GTCTTCATAATTTTCAGGAA+TGG | + | chr6.4:12257022-12257041 | MS.gene07939:CDS | 30.0% |
| !! | TTATCTTTGGAATCTCTTTC+AGG | + | chr6.4:12255922-12255941 | MS.gene07939:intron | 30.0% |
| !!! | AAGACGTTTTATTTCTCGAT+AGG | + | chr6.4:12255538-12255557 | MS.gene07939:intron | 30.0% |
| !!! | AATCACACTGGATTTTTTGT+CGG | + | chr6.4:12255199-12255218 | MS.gene07939:CDS | 30.0% |
| AAACACAAGTAATCAGCAGA+CGG | - | chr6.4:12255861-12255880 | None:intergenic | 35.0% | |
| AAAGGAATTAAAGTCGCTGA+GGG | + | chr6.4:12255716-12255735 | MS.gene07939:CDS | 35.0% | |
| AAGAACATATGAAGTCGAAG+GGG | + | chr6.4:12255174-12255193 | MS.gene07939:CDS | 35.0% | |
| ACTTCGGAAATATGGATACA+AGG | + | chr6.4:12256262-12256281 | MS.gene07939:CDS | 35.0% | |
| AGAGTTCATTACCATAGCAT+TGG | + | chr6.4:12255969-12255988 | MS.gene07939:CDS | 35.0% | |
| AGGATATATTCCAACAACTC+TGG | - | chr6.4:12256001-12256020 | None:intergenic | 35.0% | |
| CACATGTATAAGCGAAGAAA+AGG | - | chr6.4:12255788-12255807 | None:intergenic | 35.0% | |
| CAGTAATCATACTCCTTGTA+AGG | - | chr6.4:12256955-12256974 | None:intergenic | 35.0% | |
| CCAATCTTCAAAAGATTGTG+TGG | + | chr6.4:12256749-12256768 | MS.gene07939:intron | 35.0% | |
| CCTTCGTAAAATATATTGGG+AGG | + | chr6.4:12255263-12255282 | MS.gene07939:intron | 35.0% | |
| CTTCGGAAATATGGATACAA+GGG | + | chr6.4:12256263-12256282 | MS.gene07939:CDS | 35.0% | |
| CTTTAGTCAAGATCCTTACA+AGG | + | chr6.4:12256939-12256958 | MS.gene07939:CDS | 35.0% | |
| GCAAATGACTGTATAAATGC+AGG | - | chr6.4:12256320-12256339 | None:intergenic | 35.0% | |
| GGATATATTCCAACAACTCT+GGG | - | chr6.4:12256000-12256019 | None:intergenic | 35.0% | |
| GTTCATACCTGTCAAAACAT+TGG | + | chr6.4:12256285-12256304 | MS.gene07939:CDS | 35.0% | |
| GTTGAAACACTTCGGAAATA+TGG | + | chr6.4:12256254-12256273 | MS.gene07939:CDS | 35.0% | |
| TAAAGGAATTAAAGTCGCTG+AGG | + | chr6.4:12255715-12255734 | MS.gene07939:CDS | 35.0% | |
| TAGACTTAGCCATTTCAATG+CGG | - | chr6.4:12255897-12255916 | None:intergenic | 35.0% | |
| TTCAACACAAGACACTAATC+AGG | + | chr6.4:12256412-12256431 | MS.gene07939:CDS | 35.0% | |
| TTCTCATTTCTGTACGTGTA+TGG | - | chr6.4:12256901-12256920 | None:intergenic | 35.0% | |
| TTGTATGAATGTGATGGTTG+AGG | + | chr6.4:12256153-12256172 | MS.gene07939:intron | 35.0% | |
| ! | ACATGCTGATTGATAAGTAC+TGG | - | chr6.4:12256036-12256055 | None:intergenic | 35.0% |
| ! | CCTCCCAATATATTTTACGA+AGG | - | chr6.4:12255266-12255285 | None:intergenic | 35.0% |
| ! | CTTACAAGGAGTATGATTAC+TGG | + | chr6.4:12256953-12256972 | MS.gene07939:CDS | 35.0% |
| ! | GTCAAATACTTGTTAACCAC+AGG | - | chr6.4:12256631-12256650 | None:intergenic | 35.0% |
| ! | TGGGAGTCTTCATAATTTTC+AGG | + | chr6.4:12257017-12257036 | MS.gene07939:CDS | 35.0% |
| !! | ACAGGTTTGTTGAAACACTT+CGG | + | chr6.4:12256246-12256265 | MS.gene07939:CDS | 35.0% |
| !! | AGCTCCGTCAGATTTTAAAA+TGG | + | chr6.4:12255812-12255831 | MS.gene07939:intron | 35.0% |
| !! | AGTACTGGACTTTTTATCTC+AGG | - | chr6.4:12256021-12256040 | None:intergenic | 35.0% |
| !! | ATGATTGTTGATGATGATGC+AGG | + | chr6.4:12256870-12256889 | MS.gene07939:intron | 35.0% |
| !! | ATTTCTAGTGACACGTATTC+TGG | + | chr6.4:12255345-12255364 | MS.gene07939:intron | 35.0% |
| !! | CCACACAATCTTTTGAAGAT+TGG | - | chr6.4:12256752-12256771 | None:intergenic | 35.0% |
| !!! | GTTTCAACCAATGTTTTGAC+AGG | - | chr6.4:12256295-12256314 | None:intergenic | 35.0% |
| !!! | TTTTTTGCAGAGAGCTATTG+AGG | + | chr6.4:12255027-12255046 | MS.gene07939:intron | 35.0% |
| AGACTTAGCCATTTCAATGC+GGG | - | chr6.4:12255896-12255915 | None:intergenic | 40.0% | |
| CAAGTATTTGACGACTCCTT+CGG | + | chr6.4:12256639-12256658 | MS.gene07939:CDS | 40.0% | |
| CAATGAACTTCTTCTGTCTG+TGG | + | chr6.4:12256076-12256095 | MS.gene07939:intron | 40.0% | |
| CACAGACAGAAGAAGTTCAT+TGG | - | chr6.4:12256078-12256097 | None:intergenic | 40.0% | |
| CCATATAACGTTGCACATAG+GGG | + | chr6.4:12254856-12254875 | MS.gene07939:CDS | 40.0% | |
| CCCATATAACGTTGCACATA+GGG | + | chr6.4:12254855-12254874 | MS.gene07939:CDS | 40.0% | |
| CCCTATGTGCAACGTTATAT+GGG | - | chr6.4:12254858-12254877 | None:intergenic | 40.0% | |
| CTTGTATTGAACGTCCTCTT+AGG | + | chr6.4:12255396-12255415 | MS.gene07939:intron | 40.0% | |
| GAAGGATACTATAGTACCTG+TGG | + | chr6.4:12256612-12256631 | MS.gene07939:CDS | 40.0% | |
| GAATCAGAGGTTCTGCTTTA+GGG | + | chr6.4:12255740-12255759 | MS.gene07939:CDS | 40.0% | |
| GCCTGTTTACAGATTTCACT+GGG | + | chr6.4:12256998-12257017 | MS.gene07939:CDS | 40.0% | |
| GGTACTATAGTATCCTTCCA+AGG | - | chr6.4:12256610-12256629 | None:intergenic | 40.0% | |
| TAGTTGTAGGAATTGGACCT+TGG | + | chr6.4:12256590-12256609 | MS.gene07939:CDS | 40.0% | |
| TATGGGCGAAAAGTTTGAAG+AGG | - | chr6.4:12254841-12254860 | None:intergenic | 40.0% | |
| TATTGGACCGCAGAAAATAC+TGG | - | chr6.4:12256825-12256844 | None:intergenic | 40.0% | |
| TCCCAGTGAAATCTGTAAAC+AGG | - | chr6.4:12257002-12257021 | None:intergenic | 40.0% | |
| TCGAGCAGTGTTGTCAATAT+TGG | - | chr6.4:12256842-12256861 | None:intergenic | 40.0% | |
| TCTTGTCATCTTGACGGTTA+GGG | - | chr6.4:12257053-12257072 | None:intergenic | 40.0% | |
| TGAATCAGAGGTTCTGCTTT+AGG | + | chr6.4:12255739-12255758 | MS.gene07939:CDS | 40.0% | |
| ! | ATGCAGTCTTGTCATCTTGA+CGG | - | chr6.4:12257059-12257078 | None:intergenic | 40.0% |
| ! | GAGCAAACCAGTATTTTCTG+CGG | + | chr6.4:12256815-12256834 | MS.gene07939:intron | 40.0% |
| ACTTCCTGAAGAAACTCGTG+AGG | + | chr6.4:12254891-12254910 | MS.gene07939:intron | 45.0% | |
| AGAAACTCGTGAGGCATATC+TGG | + | chr6.4:12254900-12254919 | MS.gene07939:intron | 45.0% | |
| ATGTGATGCCCGCATTGAAA+TGG | + | chr6.4:12255885-12255904 | MS.gene07939:intron | 45.0% | |
| CCCCTATGTGCAACGTTATA+TGG | - | chr6.4:12254859-12254878 | None:intergenic | 45.0% | |
| CTTGTCATCTTGACGGTTAG+GGG | - | chr6.4:12257052-12257071 | None:intergenic | 45.0% | |
| GCCCATATAACGTTGCACAT+AGG | + | chr6.4:12254854-12254873 | MS.gene07939:CDS | 45.0% | |
| GGCCTGTTTACAGATTTCAC+TGG | + | chr6.4:12256997-12257016 | MS.gene07939:CDS | 45.0% | |
| GTCTTGTCATCTTGACGGTT+AGG | - | chr6.4:12257054-12257073 | None:intergenic | 45.0% | |
| TAACAGGTGAAATGGTCGGA+CGG | + | chr6.4:12256209-12256228 | MS.gene07939:intron | 45.0% | |
| TATGCCTCACGAGTTTCTTC+AGG | - | chr6.4:12254898-12254917 | None:intergenic | 45.0% | |
| TGTAGGAATTGGACCTTGGA+AGG | + | chr6.4:12256594-12256613 | MS.gene07939:CDS | 45.0% | |
| TTGCAGAGAGCTATTGAGGA+AGG | + | chr6.4:12255031-12255050 | MS.gene07939:intron | 45.0% | |
| ! | ATTTTGCCTCGCGAGTTAAG+TGG | - | chr6.4:12254931-12254950 | None:intergenic | 45.0% |
| ACGGCAAACGATTTGAGGAC+AGG | + | chr6.4:12256228-12256247 | MS.gene07939:CDS | 50.0% | |
| CAGATTATGAGCATGTGCCC+TGG | - | chr6.4:12256674-12256693 | None:intergenic | 50.0% | |
| GGCACATGCTCATAATCTGC+AGG | + | chr6.4:12256675-12256694 | MS.gene07939:CDS | 50.0% | |
| GTGAATCCACTTAACTCGCG+AGG | + | chr6.4:12254922-12254941 | MS.gene07939:intron | 50.0% | |
| GTTGCACATAGGGGCTCAAA+TGG | + | chr6.4:12254865-12254884 | MS.gene07939:CDS | 50.0% | |
| TCCTTCGGATCTTGTTGCCA+GGG | + | chr6.4:12256654-12256673 | MS.gene07939:CDS | 50.0% | |
| TCTGGGTGCATCCAATGCTA+TGG | - | chr6.4:12255983-12256002 | None:intergenic | 50.0% | |
| TTGGATGCACCCAGAGTTGT+TGG | + | chr6.4:12255988-12256007 | MS.gene07939:CDS | 50.0% | |
| AGTCGCTGAGGGTGAATCAG+AGG | + | chr6.4:12255727-12255746 | MS.gene07939:CDS | 55.0% | |
| CTCCTTCGGATCTTGTTGCC+AGG | + | chr6.4:12256653-12256672 | MS.gene07939:CDS | 55.0% | |
| GTCGAAGGGGTCAATCACAC+TGG | + | chr6.4:12255187-12255206 | MS.gene07939:CDS | 55.0% | |
| GTCGGACGGCAAACGATTTG+AGG | + | chr6.4:12256223-12256242 | MS.gene07939:CDS | 55.0% | |
| GCCCTGGCAACAAGATCCGA+AGG | - | chr6.4:12256658-12256677 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 12254824 | 12257125 | 12254824 | ID=MS.gene07939 |
| chr6.4 | mRNA | 12254824 | 12257125 | 12254824 | ID=MS.gene07939.t1;Parent=MS.gene07939 |
| chr6.4 | exon | 12254824 | 12254907 | 12254824 | ID=MS.gene07939.t1.exon1;Parent=MS.gene07939.t1 |
| chr6.4 | CDS | 12254824 | 12254907 | 12254824 | ID=cds.MS.gene07939.t1;Parent=MS.gene07939.t1 |
| chr6.4 | exon | 12255037 | 12255220 | 12255037 | ID=MS.gene07939.t1.exon2;Parent=MS.gene07939.t1 |
| chr6.4 | CDS | 12255037 | 12255220 | 12255037 | ID=cds.MS.gene07939.t1;Parent=MS.gene07939.t1 |
| chr6.4 | exon | 12255703 | 12255777 | 12255703 | ID=MS.gene07939.t1.exon3;Parent=MS.gene07939.t1 |
| chr6.4 | CDS | 12255703 | 12255777 | 12255703 | ID=cds.MS.gene07939.t1;Parent=MS.gene07939.t1 |
| chr6.4 | exon | 12255944 | 12256053 | 12255944 | ID=MS.gene07939.t1.exon4;Parent=MS.gene07939.t1 |
| chr6.4 | CDS | 12255944 | 12256053 | 12255944 | ID=cds.MS.gene07939.t1;Parent=MS.gene07939.t1 |
| chr6.4 | exon | 12256215 | 12256433 | 12256215 | ID=MS.gene07939.t1.exon5;Parent=MS.gene07939.t1 |
| chr6.4 | CDS | 12256215 | 12256433 | 12256215 | ID=cds.MS.gene07939.t1;Parent=MS.gene07939.t1 |
| chr6.4 | exon | 12256562 | 12256696 | 12256562 | ID=MS.gene07939.t1.exon6;Parent=MS.gene07939.t1 |
| chr6.4 | CDS | 12256562 | 12256696 | 12256562 | ID=cds.MS.gene07939.t1;Parent=MS.gene07939.t1 |
| chr6.4 | exon | 12256892 | 12257125 | 12256892 | ID=MS.gene07939.t1.exon7;Parent=MS.gene07939.t1 |
| chr6.4 | CDS | 12256892 | 12257125 | 12256892 | ID=cds.MS.gene07939.t1;Parent=MS.gene07939.t1 |
| Gene Sequence |
| Protein sequence |
