Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71006.t1 | XP_013444769.1 | 97.2 | 211 | 6 | 0 | 32 | 242 | 33 | 243 | 1.30E-115 | 426 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71006.t1 | A0A072TMS4 | 97.2 | 211 | 6 | 0 | 32 | 242 | 33 | 243 | 9.1e-116 | 426.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene71006 | 0.804058 | 2.59E-49 | -1.69E-46 |
| MS.gene049170 | MS.gene71006 | 0.811951 | 5.41E-51 | -1.69E-46 |
| MS.gene049609 | MS.gene71006 | 0.823757 | 1.17E-53 | -1.69E-46 |
| MS.gene049993 | MS.gene71006 | 0.800343 | 1.51E-48 | -1.69E-46 |
| MS.gene050315 | MS.gene71006 | 0.844772 | 6.15E-59 | -1.69E-46 |
| MS.gene050397 | MS.gene71006 | 0.801848 | 7.42E-49 | -1.69E-46 |
| MS.gene050426 | MS.gene71006 | -0.856121 | 3.98E-62 | -1.69E-46 |
| MS.gene050529 | MS.gene71006 | 0.809268 | 2.06E-50 | -1.69E-46 |
| MS.gene050593 | MS.gene71006 | 0.808816 | 2.57E-50 | -1.69E-46 |
| MS.gene050670 | MS.gene71006 | 0.86907 | 4.08E-66 | -1.69E-46 |
| MS.gene050747 | MS.gene71006 | 0.800975 | 1.12E-48 | -1.69E-46 |
| MS.gene05081 | MS.gene71006 | 0.808656 | 2.78E-50 | -1.69E-46 |
| MS.gene05105 | MS.gene71006 | 0.851782 | 7.09E-61 | -1.69E-46 |
| MS.gene051208 | MS.gene71006 | 0.801187 | 1.01E-48 | -1.69E-46 |
| MS.gene051387 | MS.gene71006 | 0.803126 | 4.05E-49 | -1.69E-46 |
| MS.gene051525 | MS.gene71006 | 0.867624 | 1.19E-65 | -1.69E-46 |
| MS.gene051582 | MS.gene71006 | 0.830932 | 2.22E-55 | -1.69E-46 |
| MS.gene051588 | MS.gene71006 | 0.801919 | 7.17E-49 | -1.69E-46 |
| MS.gene051838 | MS.gene71006 | 0.837091 | 6.38E-57 | -1.69E-46 |
| MS.gene052011 | MS.gene71006 | -0.849321 | 3.49E-60 | -1.69E-46 |
| MS.gene052077 | MS.gene71006 | 0.813177 | 2.92E-51 | -1.69E-46 |
| MS.gene052128 | MS.gene71006 | -0.802714 | 4.92E-49 | -1.69E-46 |
| MS.gene052134 | MS.gene71006 | 0.869198 | 3.71E-66 | -1.69E-46 |
| MS.gene052135 | MS.gene71006 | 0.863151 | 3.05E-64 | -1.69E-46 |
| MS.gene052136 | MS.gene71006 | 0.829644 | 4.59E-55 | -1.69E-46 |
| MS.gene052253 | MS.gene71006 | 0.835332 | 1.78E-56 | -1.69E-46 |
| MS.gene052340 | MS.gene71006 | 0.817917 | 2.57E-52 | -1.69E-46 |
| MS.gene052346 | MS.gene71006 | 0.821728 | 3.46E-53 | -1.69E-46 |
| MS.gene052414 | MS.gene71006 | 0.836244 | 1.05E-56 | -1.69E-46 |
| MS.gene052421 | MS.gene71006 | 0.809267 | 2.06E-50 | -1.69E-46 |
| MS.gene052469 | MS.gene71006 | 0.814281 | 1.67E-51 | -1.69E-46 |
| MS.gene052481 | MS.gene71006 | 0.81852 | 1.88E-52 | -1.69E-46 |
| MS.gene052501 | MS.gene71006 | 0.842041 | 3.29E-58 | -1.69E-46 |
| MS.gene052505 | MS.gene71006 | 0.855815 | 4.90E-62 | -1.69E-46 |
| MS.gene052589 | MS.gene71006 | 0.826838 | 2.18E-54 | -1.69E-46 |
| MS.gene052758 | MS.gene71006 | 0.829373 | 5.34E-55 | -1.69E-46 |
| MS.gene052762 | MS.gene71006 | 0.804739 | 1.87E-49 | -1.69E-46 |
| MS.gene052982 | MS.gene71006 | 0.854938 | 8.82E-62 | -1.69E-46 |
| MS.gene053330 | MS.gene71006 | 0.841611 | 4.28E-58 | -1.69E-46 |
| MS.gene054102 | MS.gene71006 | 0.845806 | 3.23E-59 | -1.69E-46 |
| MS.gene054107 | MS.gene71006 | 0.804689 | 1.91E-49 | -1.69E-46 |
| MS.gene054110 | MS.gene71006 | 0.845819 | 3.20E-59 | -1.69E-46 |
| MS.gene05413 | MS.gene71006 | 0.809441 | 1.89E-50 | -1.69E-46 |
| MS.gene054183 | MS.gene71006 | 0.813494 | 2.49E-51 | -1.69E-46 |
| MS.gene054719 | MS.gene71006 | 0.812874 | 3.40E-51 | -1.69E-46 |
| MS.gene054742 | MS.gene71006 | -0.804067 | 2.58E-49 | -1.69E-46 |
| MS.gene054918 | MS.gene71006 | 0.818287 | 2.12E-52 | -1.69E-46 |
| MS.gene054927 | MS.gene71006 | 0.814434 | 1.54E-51 | -1.69E-46 |
| MS.gene055116 | MS.gene71006 | 0.851663 | 7.66E-61 | -1.69E-46 |
| MS.gene055289 | MS.gene71006 | 0.813129 | 2.99E-51 | -1.69E-46 |
| MS.gene055369 | MS.gene71006 | 0.856102 | 4.04E-62 | -1.69E-46 |
| MS.gene055370 | MS.gene71006 | 0.851295 | 9.74E-61 | -1.69E-46 |
| MS.gene055539 | MS.gene71006 | 0.832098 | 1.15E-55 | -1.69E-46 |
| MS.gene05553 | MS.gene71006 | 0.845629 | 3.60E-59 | -1.69E-46 |
| MS.gene055741 | MS.gene71006 | 0.8236 | 1.27E-53 | -1.69E-46 |
| MS.gene055744 | MS.gene71006 | 0.829529 | 4.89E-55 | -1.69E-46 |
| MS.gene05594 | MS.gene71006 | 0.808825 | 2.56E-50 | -1.69E-46 |
| MS.gene056337 | MS.gene71006 | 0.828403 | 9.17E-55 | -1.69E-46 |
| MS.gene056351 | MS.gene71006 | 0.800306 | 1.53E-48 | -1.69E-46 |
| MS.gene056407 | MS.gene71006 | 0.806276 | 8.90E-50 | -1.69E-46 |
| MS.gene056511 | MS.gene71006 | 0.811571 | 6.55E-51 | -1.69E-46 |
| MS.gene056514 | MS.gene71006 | 0.829581 | 4.75E-55 | -1.69E-46 |
| MS.gene056633 | MS.gene71006 | 0.843113 | 1.71E-58 | -1.69E-46 |
| MS.gene056659 | MS.gene71006 | 0.830563 | 2.74E-55 | -1.69E-46 |
| MS.gene056877 | MS.gene71006 | 0.821841 | 3.26E-53 | -1.69E-46 |
| MS.gene056899 | MS.gene71006 | -0.801183 | 1.02E-48 | -1.69E-46 |
| MS.gene057048 | MS.gene71006 | 0.823579 | 1.28E-53 | -1.69E-46 |
| MS.gene057124 | MS.gene71006 | 0.852525 | 4.36E-61 | -1.69E-46 |
| MS.gene057196 | MS.gene71006 | 0.815462 | 9.13E-52 | -1.69E-46 |
| MS.gene057310 | MS.gene71006 | 0.822817 | 1.93E-53 | -1.69E-46 |
| MS.gene057476 | MS.gene71006 | 0.813539 | 2.43E-51 | -1.69E-46 |
| MS.gene057749 | MS.gene71006 | 0.819015 | 1.45E-52 | -1.69E-46 |
| MS.gene057823 | MS.gene71006 | 0.819932 | 8.96E-53 | -1.69E-46 |
| MS.gene057825 | MS.gene71006 | 0.819051 | 1.42E-52 | -1.69E-46 |
| MS.gene058233 | MS.gene71006 | 0.815312 | 9.86E-52 | -1.69E-46 |
| MS.gene058376 | MS.gene71006 | 0.840837 | 6.84E-58 | -1.69E-46 |
| MS.gene058444 | MS.gene71006 | 0.830516 | 2.81E-55 | -1.69E-46 |
| MS.gene058700 | MS.gene71006 | 0.845604 | 3.66E-59 | -1.69E-46 |
| MS.gene058746 | MS.gene71006 | 0.835288 | 1.83E-56 | -1.69E-46 |
| MS.gene058838 | MS.gene71006 | 0.815666 | 8.23E-52 | -1.69E-46 |
| MS.gene059011 | MS.gene71006 | 0.838399 | 2.94E-57 | -1.69E-46 |
| MS.gene059420 | MS.gene71006 | 0.862065 | 6.60E-64 | -1.69E-46 |
| MS.gene059512 | MS.gene71006 | 0.834341 | 3.17E-56 | -1.69E-46 |
| MS.gene059688 | MS.gene71006 | 0.81209 | 5.05E-51 | -1.69E-46 |
| MS.gene060087 | MS.gene71006 | -0.805724 | 1.16E-49 | -1.69E-46 |
| MS.gene060403 | MS.gene71006 | 0.833069 | 6.59E-56 | -1.69E-46 |
| MS.gene060835 | MS.gene71006 | 0.82899 | 6.61E-55 | -1.69E-46 |
| MS.gene061049 | MS.gene71006 | 0.808652 | 2.79E-50 | -1.69E-46 |
| MS.gene061154 | MS.gene71006 | 0.854612 | 1.10E-61 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71006.t1 | MTR_8g028545 | 94.239 | 243 | 13 | 1 | 1 | 242 | 1 | 243 | 1.19e-174 | 481 |
| MS.gene71006.t1 | MTR_4g037255 | 83.721 | 86 | 9 | 1 | 1 | 81 | 1 | 86 | 1.68e-44 | 145 |
| MS.gene71006.t1 | MTR_4g037265 | 54.198 | 131 | 21 | 2 | 112 | 242 | 91 | 182 | 1.93e-34 | 122 |
| MS.gene71006.t1 | MTR_1g081280 | 26.457 | 223 | 145 | 6 | 13 | 223 | 17 | 232 | 1.16e-18 | 82.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71006.t1 | AT2G46100 | 65.728 | 213 | 57 | 3 | 28 | 228 | 27 | 235 | 4.57e-102 | 297 |
| MS.gene71006.t1 | AT2G46100 | 58.000 | 150 | 47 | 3 | 28 | 165 | 27 | 172 | 1.73e-51 | 168 |
| MS.gene71006.t1 | AT3G04890 | 34.965 | 143 | 87 | 3 | 94 | 232 | 76 | 216 | 4.90e-22 | 91.3 |
| MS.gene71006.t1 | AT3G04890 | 34.965 | 143 | 87 | 3 | 94 | 232 | 80 | 220 | 5.91e-22 | 91.3 |
| MS.gene71006.t1 | AT3G04890 | 32.283 | 127 | 74 | 2 | 94 | 208 | 76 | 202 | 4.74e-16 | 75.5 |
| MS.gene71006.t1 | AT3G04890 | 32.283 | 127 | 74 | 2 | 94 | 208 | 80 | 206 | 5.44e-16 | 75.1 |
Find 50 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTGGAGGCCTATTCTTTC+TGG | 0.046570 | 8.4:-37374253 | MS.gene71006:intron |
| GTTGTTGTGACTCTTGATTT+TGG | 0.256583 | 8.4:+37375946 | None:intergenic |
| CACTAACTTTGGATCACTTC+TGG | 0.287804 | 8.4:-37374697 | MS.gene71006:CDS |
| TTGTGGTGATGTTGTTGTTT+TGG | 0.314085 | 8.4:+37376014 | None:intergenic |
| TGCATTGAATTTGAAACCTA+TGG | 0.325155 | 8.4:+37375979 | None:intergenic |
| GCTGTATCTTGTCCTTTCCT+TGG | 0.347381 | 8.4:-37374270 | MS.gene71006:CDS |
| ACAGAACAATGTATTTCTTA+AGG | 0.354819 | 8.4:-37375925 | MS.gene71006:CDS |
| CTGTGACAAAATAAGATCTT+TGG | 0.367519 | 8.4:+37375760 | None:intergenic |
| CTTTGTTCAAGCAAATTCTA+AGG | 0.368956 | 8.4:-37373773 | MS.gene71006:CDS |
| TGGTATAGTTCTGAGCTTCT+AGG | 0.369490 | 8.4:-37375897 | MS.gene71006:CDS |
| AAAAGGAACTGCACTAACTT+TGG | 0.371780 | 8.4:-37374708 | MS.gene71006:CDS |
| GTATCTTGTCCTTTCCTTGG+AGG | 0.412030 | 8.4:-37374267 | MS.gene71006:CDS |
| CCATGACAGGATAAAGGAAT+TGG | 0.428536 | 8.4:-37374307 | MS.gene71006:intron |
| TTTGCTCCATGACAGGATAA+AGG | 0.440137 | 8.4:-37374313 | MS.gene71006:intron |
| CTTTCAGGCATGTGGAGCAT+TGG | 0.446746 | 8.4:-37373812 | MS.gene71006:intron |
| TGAGATTTACCAGAAAGAAT+AGG | 0.456237 | 8.4:+37374244 | None:intergenic |
| GTGGTGATGGTTGTGACTAA+TGG | 0.469661 | 8.4:+37376055 | None:intergenic |
| TGAAGAGGATTGTGAATTTG+CGG | 0.489339 | 8.4:-37374766 | MS.gene71006:CDS |
| AAGGACTTCAGCGTTTCAAA+AGG | 0.491123 | 8.4:-37374725 | MS.gene71006:CDS |
| TTTAAGCTAAATCCCTTGCT+AGG | 0.497530 | 8.4:+37373750 | None:intergenic |
| AGGTTTCAAATTCAATGCAA+TGG | 0.509267 | 8.4:-37375975 | MS.gene71006:CDS |
| ATGTATTTCTTAAGGTTGCA+TGG | 0.514798 | 8.4:-37375917 | MS.gene71006:CDS |
| CTAGGTTGCTGAAGTTGTCC+AGG | 0.518768 | 8.4:-37373716 | MS.gene71006:intron |
| GAAGCTTCTTCTTCATCAGA+TGG | 0.522340 | 8.4:+37375849 | None:intergenic |
| CACAACAGAAGCACGATCAA+TGG | 0.522503 | 8.4:+37375803 | None:intergenic |
| CACAATCAGGAAAAGTATGC+AGG | 0.531502 | 8.4:-37373914 | MS.gene71006:intron |
| CAACTATGAATCTTATGAAG+TGG | 0.531678 | 8.4:-37374668 | MS.gene71006:CDS |
| CCTGAAAACTTTCAGGCATG+TGG | 0.535655 | 8.4:-37373820 | MS.gene71006:intron |
| TTGGCTCGAGATGGTTCCAT+TGG | 0.536229 | 8.4:+37372991 | None:intergenic |
| CATTGATCGTGCTTCTGTTG+TGG | 0.537026 | 8.4:-37375802 | MS.gene71006:CDS |
| TGTGAATTTGCGGATCCAGC+GGG | 0.538988 | 8.4:-37374756 | MS.gene71006:CDS |
| CACATTGAATGCATATGAAG+AGG | 0.540073 | 8.4:-37374781 | MS.gene71006:CDS |
| AACTATGAATCTTATGAAGT+GGG | 0.541276 | 8.4:-37374667 | MS.gene71006:CDS |
| CCAGAAAGAATAGGCCTCCA+AGG | 0.545523 | 8.4:+37374253 | None:intergenic |
| AGGATAAAGGAATTGGTCAC+TGG | 0.548719 | 8.4:-37374300 | MS.gene71006:CDS |
| GCAAATTCTAAGGCCTAGCA+AGG | 0.551037 | 8.4:-37373763 | MS.gene71006:CDS |
| TGCAGCAGATACTAATCAGT+TGG | 0.554970 | 8.4:+37372972 | None:intergenic |
| CTTCTTCATCAGATGGAGAA+CGG | 0.564350 | 8.4:+37375856 | None:intergenic |
| GCTTAAAAGATTATGTGACT+AGG | 0.578708 | 8.4:-37373734 | MS.gene71006:CDS |
| AAGAATAGGCCTCCAAGGAA+AGG | 0.586585 | 8.4:+37374258 | None:intergenic |
| GAAGAGTGTGACTTTACCAA+TGG | 0.588163 | 8.4:-37373007 | MS.gene71006:CDS |
| ACTAATCAGTTGGCTCGAGA+TGG | 0.592513 | 8.4:+37372982 | None:intergenic |
| AGAACAAAGAAGTGTGGTGA+TGG | 0.594904 | 8.4:+37376042 | None:intergenic |
| AGTCCTTTAAAAGATCCCGC+TGG | 0.610274 | 8.4:+37374741 | None:intergenic |
| TTGTGAATTTGCGGATCCAG+CGG | 0.612444 | 8.4:-37374757 | MS.gene71006:CDS |
| CTGAGCTAGGTCAATGACAA+TGG | 0.620179 | 8.4:-37373040 | MS.gene71006:intron |
| GTTTGAAGAAGTCTCTGAGG+AGG | 0.641425 | 8.4:+37375825 | None:intergenic |
| CAAATTCTAAGGCCTAGCAA+GGG | 0.670959 | 8.4:-37373762 | MS.gene71006:CDS |
| ATGGTTTGAAGAAGTCTCTG+AGG | 0.694702 | 8.4:+37375822 | None:intergenic |
| GTGCAAAGAACAAAGAAGTG+TGG | 0.724805 | 8.4:+37376036 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTATACTGATATCATTAT+TGG | + | chr8.4:37375874-37375893 | None:intergenic | 15.0% |
| !!! | TAAAATTTGTTAGTTTAATC+AGG | + | chr8.4:37373717-37373736 | None:intergenic | 15.0% |
| !!! | TTATTTGCCTTTTAATATTA+TGG | - | chr8.4:37375704-37375723 | MS.gene71006:intron | 15.0% |
| !! | AAATACATAAAAACAGTAAG+TGG | - | chr8.4:37375732-37375751 | MS.gene71006:intron | 20.0% |
| !! | AATAAACCAACAAATATGTA+AGG | + | chr8.4:37375682-37375701 | None:intergenic | 20.0% |
| !! | AATTTCATTATGTTCATCAA+TGG | + | chr8.4:37374876-37374895 | None:intergenic | 20.0% |
| !! | ATAAACCAACAAATATGTAA+GGG | + | chr8.4:37375681-37375700 | None:intergenic | 20.0% |
| !! | ATGTTCAAATTAACATGAAT+CGG | - | chr8.4:37374988-37375007 | MS.gene71006:intron | 20.0% |
| !! | GATTAAACTCTATTAAGTTA+AGG | + | chr8.4:37374622-37374641 | None:intergenic | 20.0% |
| !! | TATAAAAAACACAAGTTTCT+AGG | + | chr8.4:37374660-37374679 | None:intergenic | 20.0% |
| !!! | GTATTTTGATTATAATCAGA+TGG | - | chr8.4:37374219-37374238 | MS.gene71006:intron | 20.0% |
| !!! | TACTACTCAATAATGTTTTA+GGG | - | chr8.4:37374051-37374070 | MS.gene71006:intron | 20.0% |
| !!! | TACTGTTTTTATGTATTTGT+TGG | + | chr8.4:37375730-37375749 | None:intergenic | 20.0% |
| !!! | TATTATTTTGATACACAATC+AGG | - | chr8.4:37375137-37375156 | MS.gene71006:intron | 20.0% |
| !!! | TTTTGTATCAGTCATTATAT+AGG | + | chr8.4:37374168-37374187 | None:intergenic | 20.0% |
| ! | AACTATGAATCTTATGAAGT+GGG | - | chr8.4:37374397-37374416 | MS.gene71006:intron | 25.0% |
| ! | AAGCTTTGCTTAATTATTGA+TGG | - | chr8.4:37375633-37375652 | MS.gene71006:intron | 25.0% |
| ! | ACAATAACACAAAAATCCAT+AGG | - | chr8.4:37373069-37373088 | MS.gene71006:intron | 25.0% |
| ! | ACAGAACAATGTATTTCTTA+AGG | - | chr8.4:37373139-37373158 | MS.gene71006:intron | 25.0% |
| ! | AGGAATATCCTGTATATATA+TGG | - | chr8.4:37375494-37375513 | MS.gene71006:intron | 25.0% |
| ! | ATATAATTTACCTATTCACC+TGG | + | chr8.4:37375369-37375388 | None:intergenic | 25.0% |
| ! | ATGTAATATCAAGAGTTACA+AGG | + | chr8.4:37374529-37374548 | None:intergenic | 25.0% |
| ! | CAAAATGAAGCTAATACAAT+TGG | - | chr8.4:37374183-37374202 | MS.gene71006:intron | 25.0% |
| ! | CAGAAAAAATAACAGAGAAA+AGG | - | chr8.4:37375557-37375576 | MS.gene71006:intron | 25.0% |
| ! | CATACTTAAAATTGAAGCTA+TGG | + | chr8.4:37373419-37373438 | None:intergenic | 25.0% |
| ! | CTCAATCTATTAGATATACA+TGG | + | chr8.4:37374853-37374872 | None:intergenic | 25.0% |
| ! | GTACTAATTATAGAAGTCTA+TGG | - | chr8.4:37375452-37375471 | MS.gene71006:intron | 25.0% |
| ! | TAAACCAACAAATATGTAAG+GGG | + | chr8.4:37375680-37375699 | None:intergenic | 25.0% |
| ! | TATGGTTTACCAGATTAATT+AGG | - | chr8.4:37375512-37375531 | MS.gene71006:intron | 25.0% |
| ! | TGCTTAAAATAGCAATACAA+AGG | - | chr8.4:37373883-37373902 | MS.gene71006:intron | 25.0% |
| ! | TGTTCAAATTAACATGAATC+GGG | - | chr8.4:37374989-37375008 | MS.gene71006:intron | 25.0% |
| ! | TTAGTGTTTACTTGAAAAGA+AGG | - | chr8.4:37375760-37375779 | MS.gene71006:CDS | 25.0% |
| ! | TTGTTGGCCATAATATTAAA+AGG | + | chr8.4:37375714-37375733 | None:intergenic | 25.0% |
| !! | AATATAGAGTTTTGCAACTT+AGG | - | chr8.4:37374469-37374488 | MS.gene71006:intron | 25.0% |
| !! | ACTAATCTGTATTTTTCGTT+TGG | + | chr8.4:37375972-37375991 | None:intergenic | 25.0% |
| !! | GAGAAAAAGTTGATTACAAT+CGG | - | chr8.4:37373668-37373687 | MS.gene71006:intron | 25.0% |
| !! | GTACTACTCAATAATGTTTT+AGG | - | chr8.4:37374050-37374069 | MS.gene71006:intron | 25.0% |
| !! | TTCATTTGATTTCTGTGTTT+GGG | - | chr8.4:37373383-37373402 | MS.gene71006:intron | 25.0% |
| !! | TTTCATTTGATTTCTGTGTT+TGG | - | chr8.4:37373382-37373401 | MS.gene71006:intron | 25.0% |
| !!! | ATTGCTATTTTAAGCACTTA+CGG | + | chr8.4:37373879-37373898 | None:intergenic | 25.0% |
| !!! | CATAGCTTCAATTTTAAGTA+TGG | - | chr8.4:37373417-37373436 | MS.gene71006:intron | 25.0% |
| !!! | CTTTTCTCTGTTATTTTTTC+TGG | + | chr8.4:37375559-37375578 | None:intergenic | 25.0% |
| !!! | TATGGATTTTTGTGTTATTG+TGG | + | chr8.4:37373070-37373089 | None:intergenic | 25.0% |
| !!! | TGTCTTTTTTACACATCATT+TGG | - | chr8.4:37373453-37373472 | MS.gene71006:intron | 25.0% |
| AAACCAACAAATATGTAAGG+GGG | + | chr8.4:37375679-37375698 | None:intergenic | 30.0% | |
| AAACGTTTATTGGGTATGAT+TGG | - | chr8.4:37373564-37373583 | MS.gene71006:intron | 30.0% | |
| AACGTTTATTGGGTATGATT+GGG | - | chr8.4:37373565-37373584 | MS.gene71006:intron | 30.0% | |
| ACGAAAAATAAATCCAAGAG+AGG | + | chr8.4:37374950-37374969 | None:intergenic | 30.0% | |
| AGGTTTCAAATTCAATGCAA+TGG | - | chr8.4:37373089-37373108 | MS.gene71006:intron | 30.0% | |
| ATGTATTTCTTAAGGTTGCA+TGG | - | chr8.4:37373147-37373166 | MS.gene71006:intron | 30.0% | |
| ATTAATTAGGTCTGTGAATG+TGG | - | chr8.4:37375525-37375544 | MS.gene71006:intron | 30.0% | |
| ATTATACACATGTAAGTCTG+TGG | - | chr8.4:37375420-37375439 | MS.gene71006:intron | 30.0% | |
| ATTCACAGACCTAATTAATC+TGG | + | chr8.4:37375524-37375543 | None:intergenic | 30.0% | |
| ATTCCTAGTTACTGATAAGT+GGG | - | chr8.4:37373525-37373544 | MS.gene71006:intron | 30.0% | |
| CAACTATGAATCTTATGAAG+TGG | - | chr8.4:37374396-37374415 | MS.gene71006:intron | 30.0% | |
| CGAAAAATACAGATTAGTGT+TGG | - | chr8.4:37375974-37375993 | MS.gene71006:CDS | 30.0% | |
| CTAAATTCCTGAAAACTTTC+AGG | - | chr8.4:37375237-37375256 | MS.gene71006:intron | 30.0% | |
| CTGGTAAACCATATATATAC+AGG | + | chr8.4:37375505-37375524 | None:intergenic | 30.0% | |
| CTGTGACAAAATAAGATCTT+TGG | + | chr8.4:37373307-37373326 | None:intergenic | 30.0% | |
| CTTTGTTCAAGCAAATTCTA+AGG | - | chr8.4:37375291-37375310 | MS.gene71006:intron | 30.0% | |
| GCTTAAAAGATTATGTGACT+AGG | - | chr8.4:37375330-37375349 | MS.gene71006:intron | 30.0% | |
| TGAGATTTACCAGAAAGAAT+AGG | + | chr8.4:37374823-37374842 | None:intergenic | 30.0% | |
| TGCTGCAACATATATTAACA+TGG | + | chr8.4:37375102-37375121 | None:intergenic | 30.0% | |
| TGTATTTATCTGCATTTGAC+TGG | - | chr8.4:37374922-37374941 | MS.gene71006:intron | 30.0% | |
| TTAATATATGTTGCAGCAAC+TGG | - | chr8.4:37375104-37375123 | MS.gene71006:intron | 30.0% | |
| TTACATGCAACTGATGATAA+AGG | - | chr8.4:37374543-37374562 | MS.gene71006:intron | 30.0% | |
| TTATAATCAGATGGTTCACA+TGG | - | chr8.4:37374228-37374247 | MS.gene71006:intron | 30.0% | |
| ! | AAGATTTGTATTTTGCAGCA+TGG | + | chr8.4:37375917-37375936 | None:intergenic | 30.0% |
| ! | CGGGTTTTTAATAGAATATG+TGG | - | chr8.4:37375008-37375027 | MS.gene71006:intron | 30.0% |
| ! | TCAATCTTTTTATCGAGTGT+TGG | - | chr8.4:37374691-37374710 | MS.gene71006:CDS | 30.0% |
| ! | TGCATTGAATTTGAAACCTA+TGG | + | chr8.4:37373088-37373107 | None:intergenic | 30.0% |
| !! | GTATCTTTTACTTTTGAACC+AGG | - | chr8.4:37373995-37374014 | MS.gene71006:intron | 30.0% |
| !! | TCATTTGGATGATTGATTTG+TGG | - | chr8.4:37373468-37373487 | MS.gene71006:intron | 30.0% |
| !!! | ATGCTTTTTCTTATGAAACG+TGG | - | chr8.4:37373344-37373363 | MS.gene71006:intron | 30.0% |
| !!! | CAAAGATCTTATTTTGTCAC+AGG | - | chr8.4:37373305-37373324 | MS.gene71006:intron | 30.0% |
| !!! | CTCAATAATGTTTTAGGGAT+TGG | - | chr8.4:37374056-37374075 | MS.gene71006:intron | 30.0% |
| AAAAGGAACTGCACTAACTT+TGG | - | chr8.4:37374356-37374375 | MS.gene71006:intron | 35.0% | |
| AACCAACAAATATGTAAGGG+GGG | + | chr8.4:37375678-37375697 | None:intergenic | 35.0% | |
| ACGTTTATTGGGTATGATTG+GGG | - | chr8.4:37373566-37373585 | MS.gene71006:intron | 35.0% | |
| ATGAACATCATAAGGATTGG+TGG | + | chr8.4:37375949-37375968 | None:intergenic | 35.0% | |
| ATGAGATTGTGAAGTGAAAG+AGG | + | chr8.4:37375851-37375870 | None:intergenic | 35.0% | |
| CACATTGAATGCATATGAAG+AGG | - | chr8.4:37374283-37374302 | MS.gene71006:CDS | 35.0% | |
| CATGACTATTCAGAGTTGTT+AGG | - | chr8.4:37373498-37373517 | MS.gene71006:intron | 35.0% | |
| CTATTAAGTTAAGGCTGCTT+AGG | + | chr8.4:37374613-37374632 | None:intergenic | 35.0% | |
| GATGATAAAGGTTTCTGATG+CGG | - | chr8.4:37374555-37374574 | MS.gene71006:intron | 35.0% | |
| GATTCCTAGTTACTGATAAG+TGG | - | chr8.4:37373524-37373543 | MS.gene71006:intron | 35.0% | |
| GTAATGCTGAGAACAAAAAG+AGG | - | chr8.4:37374078-37374097 | MS.gene71006:intron | 35.0% | |
| GTAGAAGCTTATGATGTACT+AGG | - | chr8.4:37375474-37375493 | MS.gene71006:intron | 35.0% | |
| TCAGGAGCAATGTTGTAATA+TGG | - | chr8.4:37373814-37373833 | MS.gene71006:intron | 35.0% | |
| TCGTTTGGATGAACATCATA+AGG | + | chr8.4:37375957-37375976 | None:intergenic | 35.0% | |
| TGAAGAGGATTGTGAATTTG+CGG | - | chr8.4:37374298-37374317 | MS.gene71006:CDS | 35.0% | |
| TGGATGAACATCATAAGGAT+TGG | + | chr8.4:37375952-37375971 | None:intergenic | 35.0% | |
| TTTAAGCTAAATCCCTTGCT+AGG | + | chr8.4:37375317-37375336 | None:intergenic | 35.0% | |
| ! | GTTGTTGTGACTCTTGATTT+TGG | + | chr8.4:37373121-37373140 | None:intergenic | 35.0% |
| ! | TATGAAGTGGGAAGATTTTG+AGG | - | chr8.4:37374409-37374428 | MS.gene71006:intron | 35.0% |
| ! | TGAACATCATAAGGATTGGT+GGG | + | chr8.4:37375948-37375967 | None:intergenic | 35.0% |
| !! | AAGCAGTAGAAAAGTGTTCA+AGG | + | chr8.4:37374444-37374463 | None:intergenic | 35.0% |
| !! | ATTAGTGTTGGTTTCTCCAA+TGG | - | chr8.4:37375986-37376005 | MS.gene71006:CDS | 35.0% |
| !! | GATGATTGATTTGTGGAGAA+AGG | - | chr8.4:37373475-37373494 | MS.gene71006:intron | 35.0% |
| !! | GTTTCTAGGATATGTTTAGC+AGG | + | chr8.4:37374646-37374665 | None:intergenic | 35.0% |
| !! | TGCTTGAACAAAGCCATTTT+TGG | + | chr8.4:37375284-37375303 | None:intergenic | 35.0% |
| !!! | TTGTGGTGATGTTGTTGTTT+TGG | + | chr8.4:37373053-37373072 | None:intergenic | 35.0% |
| AAGGACTTCAGCGTTTCAAA+AGG | - | chr8.4:37374339-37374358 | MS.gene71006:intron | 40.0% | |
| ACCAACAAATATGTAAGGGG+GGG | + | chr8.4:37375677-37375696 | None:intergenic | 40.0% | |
| AGGATAAAGGAATTGGTCAC+TGG | - | chr8.4:37374764-37374783 | MS.gene71006:CDS | 40.0% | |
| ATGGTTTGAAGAAGTCTCTG+AGG | + | chr8.4:37373245-37373264 | None:intergenic | 40.0% | |
| ATTCAATGTGAGATCTCCTG+AGG | + | chr8.4:37374273-37374292 | None:intergenic | 40.0% | |
| CACATGTAAGTCTGTGGTAT+TGG | - | chr8.4:37375426-37375445 | MS.gene71006:intron | 40.0% | |
| CACTAACTTTGGATCACTTC+TGG | - | chr8.4:37374367-37374386 | MS.gene71006:intron | 40.0% | |
| CCAATTCCTTTATCCTGTCA+TGG | + | chr8.4:37374760-37374779 | None:intergenic | 40.0% | |
| CCATGACAGGATAAAGGAAT+TGG | - | chr8.4:37374757-37374776 | MS.gene71006:CDS | 40.0% | |
| CGTTTATTGGGTATGATTGG+GGG | - | chr8.4:37373567-37373586 | MS.gene71006:intron | 40.0% | |
| CTACCCACTTATCAGTAACT+AGG | + | chr8.4:37373531-37373550 | None:intergenic | 40.0% | |
| CTAGTTACTGATAAGTGGGT+AGG | - | chr8.4:37373529-37373548 | MS.gene71006:intron | 40.0% | |
| CTTCTTCATCAGATGGAGAA+CGG | + | chr8.4:37373211-37373230 | None:intergenic | 40.0% | |
| GAAGCTTCTTCTTCATCAGA+TGG | + | chr8.4:37373218-37373237 | None:intergenic | 40.0% | |
| GCATTGGAATGTGCCAAAAA+TGG | - | chr8.4:37375268-37375287 | MS.gene71006:intron | 40.0% | |
| GGTATGGTAGTTAGATCCAT+TGG | + | chr8.4:37376005-37376024 | None:intergenic | 40.0% | |
| GTGCAAAGAACAAAGAAGTG+TGG | + | chr8.4:37373031-37373050 | None:intergenic | 40.0% | |
| GTTAGAATAGAACAGCAACC+TGG | + | chr8.4:37374016-37374035 | None:intergenic | 40.0% | |
| GTTTATTGGGTATGATTGGG+GGG | - | chr8.4:37373568-37373587 | MS.gene71006:intron | 40.0% | |
| TCATACATTTGCTCCATGAC+AGG | - | chr8.4:37374744-37374763 | MS.gene71006:CDS | 40.0% | |
| TTACTGATAAGTGGGTAGGT+CGG | - | chr8.4:37373533-37373552 | MS.gene71006:intron | 40.0% | |
| TTCAATGTGAGATCTCCTGA+GGG | + | chr8.4:37374272-37374291 | None:intergenic | 40.0% | |
| TTTGCTCCATGACAGGATAA+AGG | - | chr8.4:37374751-37374770 | MS.gene71006:CDS | 40.0% | |
| ! | AGAACAAAGAAGTGTGGTGA+TGG | + | chr8.4:37373025-37373044 | None:intergenic | 40.0% |
| ! | CACAATCAGGAAAAGTATGC+AGG | - | chr8.4:37375150-37375169 | MS.gene71006:intron | 40.0% |
| ! | GAAGAGTGTGACTTTACCAA+TGG | - | chr8.4:37376057-37376076 | MS.gene71006:CDS | 40.0% |
| !! | CAAATTCTAAGGCCTAGCAA+GGG | - | chr8.4:37375302-37375321 | MS.gene71006:intron | 40.0% |
| !! | TGGTATAGTTCTGAGCTTCT+AGG | - | chr8.4:37373167-37373186 | MS.gene71006:intron | 40.0% |
| AACACTTTGCTCCAACAGTG+TGG | - | chr8.4:37373790-37373809 | MS.gene71006:CDS | 45.0% | |
| AAGAATAGGCCTCCAAGGAA+AGG | + | chr8.4:37374809-37374828 | None:intergenic | 45.0% | |
| ACCCAATAAACGTTTGAGCC+TGG | + | chr8.4:37373559-37373578 | None:intergenic | 45.0% | |
| CATTGATCGTGCTTCTGTTG+TGG | - | chr8.4:37373262-37373281 | MS.gene71006:intron | 45.0% | |
| CATTGTCATTGACCTAGCTC+AGG | + | chr8.4:37376026-37376045 | None:intergenic | 45.0% | |
| CATTTGACTGGAACCTCTCT+TGG | - | chr8.4:37374934-37374953 | MS.gene71006:intron | 45.0% | |
| CCTGAAAACTTTCAGGCATG+TGG | - | chr8.4:37375244-37375263 | MS.gene71006:intron | 45.0% | |
| CTAACTACCATACCTGAGCT+AGG | - | chr8.4:37376011-37376030 | MS.gene71006:CDS | 45.0% | |
| CTGAAGTTGTCCAGGTGAAT+AGG | - | chr8.4:37375356-37375375 | MS.gene71006:intron | 45.0% | |
| CTGAGCTAGGTCAATGACAA+TGG | - | chr8.4:37376024-37376043 | MS.gene71006:CDS | 45.0% | |
| GCCAGGCTCAAACGTTTATT+GGG | - | chr8.4:37373555-37373574 | MS.gene71006:intron | 45.0% | |
| GCTGTATCTTGTCCTTTCCT+TGG | - | chr8.4:37374794-37374813 | MS.gene71006:intron | 45.0% | |
| GTATCTTGTCCTTTCCTTGG+AGG | - | chr8.4:37374797-37374816 | MS.gene71006:intron | 45.0% | |
| TCATTGACCTAGCTCAGGTA+TGG | + | chr8.4:37376021-37376040 | None:intergenic | 45.0% | |
| TCCCCCCCTTACATATTTGT+TGG | - | chr8.4:37375673-37375692 | MS.gene71006:intron | 45.0% | |
| TTGTGAATTTGCGGATCCAG+CGG | - | chr8.4:37374307-37374326 | MS.gene71006:intron | 45.0% | |
| ! | AGTCCTTTAAAAGATCCCGC+TGG | + | chr8.4:37374326-37374345 | None:intergenic | 45.0% |
| ! | CACAACAGAAGCACGATCAA+TGG | + | chr8.4:37373264-37373283 | None:intergenic | 45.0% |
| ! | CCACATGCCTGAAAGTTTTC+AGG | + | chr8.4:37375247-37375266 | None:intergenic | 45.0% |
| ! | GATCCAGCGGGATCTTTTAA+AGG | - | chr8.4:37374320-37374339 | MS.gene71006:intron | 45.0% |
| ! | GTTTGAAGAAGTCTCTGAGG+AGG | + | chr8.4:37373242-37373261 | None:intergenic | 45.0% |
| ! | TTTTGCAGCATGGCAGACTT+AGG | + | chr8.4:37375907-37375926 | None:intergenic | 45.0% |
| !! | GCAAATTCTAAGGCCTAGCA+AGG | - | chr8.4:37375301-37375320 | MS.gene71006:intron | 45.0% |
| !! | GTGGTGATGGTTGTGACTAA+TGG | + | chr8.4:37373012-37373031 | None:intergenic | 45.0% |
| ATCTATTCCTCCCAACCCTC+AGG | - | chr8.4:37374254-37374273 | MS.gene71006:CDS | 50.0% | |
| ATGTGAGATCTCCTGAGGGT+TGG | + | chr8.4:37374268-37374287 | None:intergenic | 50.0% | |
| CCAGAAAGAATAGGCCTCCA+AGG | + | chr8.4:37374814-37374833 | None:intergenic | 50.0% | |
| CCTTGGAGGCCTATTCTTTC+TGG | - | chr8.4:37374811-37374830 | MS.gene71006:intron | 50.0% | |
| CTAGGTTGCTGAAGTTGTCC+AGG | - | chr8.4:37375348-37375367 | MS.gene71006:intron | 50.0% | |
| CTTTCAGGCATGTGGAGCAT+TGG | - | chr8.4:37375252-37375271 | MS.gene71006:intron | 50.0% | |
| GGCCAGGCTCAAACGTTTAT+TGG | - | chr8.4:37373554-37373573 | MS.gene71006:intron | 50.0% | |
| TGTGAATTTGCGGATCCAGC+GGG | - | chr8.4:37374308-37374327 | MS.gene71006:intron | 50.0% | |
| TGTGAGATCTCCTGAGGGTT+GGG | + | chr8.4:37374267-37374286 | None:intergenic | 50.0% | |
| TTGCTCCAACAGTGTGGTTC+AGG | - | chr8.4:37373796-37373815 | MS.gene71006:CDS | 50.0% | |
| TTGCTCCTGAACCACACTGT+TGG | + | chr8.4:37373804-37373823 | None:intergenic | 50.0% | |
| ! | TTGGCTCGAGATGGTTCCAT+TGG | + | chr8.4:37376076-37376095 | None:intergenic | 50.0% |
| ACTGCATCCCGCTTTGCAGT+CGG | - | chr8.4:37373907-37373926 | MS.gene71006:intron | 55.0% | |
| CTACGTCTCCGACTGCAAAG+CGG | + | chr8.4:37373918-37373937 | None:intergenic | 55.0% | |
| TACGTCTCCGACTGCAAAGC+GGG | + | chr8.4:37373917-37373936 | None:intergenic | 55.0% | |
| CGCTTTGCAGTCGGAGACGT+AGG | - | chr8.4:37373916-37373935 | MS.gene71006:CDS | 60.0% | |
| GAGATCTCCTGAGGGTTGGG+AGG | + | chr8.4:37374264-37374283 | None:intergenic | 60.0% | |
| GATAAGTGGGTAGGTCGGCC+AGG | - | chr8.4:37373538-37373557 | MS.gene71006:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 37372987 | 37376099 | 37372987 | ID=MS.gene71006 |
| chr8.4 | mRNA | 37372987 | 37376099 | 37372987 | ID=MS.gene71006.t1;Parent=MS.gene71006 |
| chr8.4 | exon | 37375760 | 37376099 | 37375760 | ID=MS.gene71006.t1.exon1;Parent=MS.gene71006.t1 |
| chr8.4 | CDS | 37375760 | 37376099 | 37375760 | ID=cds.MS.gene71006.t1;Parent=MS.gene71006.t1 |
| chr8.4 | exon | 37374656 | 37374810 | 37374656 | ID=MS.gene71006.t1.exon2;Parent=MS.gene71006.t1 |
| chr8.4 | CDS | 37374656 | 37374810 | 37374656 | ID=cds.MS.gene71006.t1;Parent=MS.gene71006.t1 |
| chr8.4 | exon | 37374254 | 37374320 | 37374254 | ID=MS.gene71006.t1.exon3;Parent=MS.gene71006.t1 |
| chr8.4 | CDS | 37374254 | 37374320 | 37374254 | ID=cds.MS.gene71006.t1;Parent=MS.gene71006.t1 |
| chr8.4 | exon | 37373915 | 37373966 | 37373915 | ID=MS.gene71006.t1.exon4;Parent=MS.gene71006.t1 |
| chr8.4 | CDS | 37373915 | 37373966 | 37373915 | ID=cds.MS.gene71006.t1;Parent=MS.gene71006.t1 |
| chr8.4 | exon | 37373717 | 37373827 | 37373717 | ID=MS.gene71006.t1.exon5;Parent=MS.gene71006.t1 |
| chr8.4 | CDS | 37373717 | 37373827 | 37373717 | ID=cds.MS.gene71006.t1;Parent=MS.gene71006.t1 |
| chr8.4 | exon | 37372987 | 37373053 | 37372987 | ID=MS.gene71006.t1.exon6;Parent=MS.gene71006.t1 |
| chr8.4 | CDS | 37372987 | 37373053 | 37372987 | ID=cds.MS.gene71006.t1;Parent=MS.gene71006.t1 |
| Gene Sequence |
| Protein sequence |
