Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064519.t1 | XP_003616290.1 | 97.2 | 427 | 12 | 0 | 1 | 427 | 1 | 427 | 1.50E-203 | 718.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064519.t1 | Q9C8Y4 | 75.5 | 245 | 54 | 1 | 174 | 418 | 162 | 400 | 1.2e-92 | 341.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064519.t1 | G7K1Q0 | 97.2 | 427 | 12 | 0 | 1 | 427 | 1 | 427 | 1.1e-203 | 718.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049150 | MS.gene064519 | 0.851521 | 8.41E-61 | -1.69E-46 |
MS.gene049153 | MS.gene064519 | 0.843208 | 1.61E-58 | -1.69E-46 |
MS.gene049170 | MS.gene064519 | 0.811927 | 5.48E-51 | -1.69E-46 |
MS.gene049356 | MS.gene064519 | 0.859392 | 4.27E-63 | -1.69E-46 |
MS.gene049910 | MS.gene064519 | 0.806622 | 7.52E-50 | -1.69E-46 |
MS.gene050128 | MS.gene064519 | 0.805729 | 1.16E-49 | -1.69E-46 |
MS.gene050301 | MS.gene064519 | 0.816247 | 6.10E-52 | -1.69E-46 |
MS.gene050426 | MS.gene064519 | -0.82656 | 2.54E-54 | -1.69E-46 |
MS.gene050529 | MS.gene064519 | 0.807597 | 4.68E-50 | -1.69E-46 |
MS.gene050670 | MS.gene064519 | 0.869171 | 3.78E-66 | -1.69E-46 |
MS.gene05105 | MS.gene064519 | 0.829424 | 5.19E-55 | -1.69E-46 |
MS.gene051360 | MS.gene064519 | 0.804658 | 1.94E-49 | -1.69E-46 |
MS.gene051525 | MS.gene064519 | 0.835428 | 1.69E-56 | -1.69E-46 |
MS.gene051582 | MS.gene064519 | 0.819094 | 1.39E-52 | -1.69E-46 |
MS.gene051588 | MS.gene064519 | 0.812108 | 5.00E-51 | -1.69E-46 |
MS.gene051605 | MS.gene064519 | 0.818893 | 1.55E-52 | -1.69E-46 |
MS.gene051860 | MS.gene064519 | 0.822936 | 1.81E-53 | -1.69E-46 |
MS.gene051983 | MS.gene064519 | 0.810158 | 1.32E-50 | -1.69E-46 |
MS.gene052011 | MS.gene064519 | -0.841977 | 3.43E-58 | -1.69E-46 |
MS.gene052077 | MS.gene064519 | 0.848585 | 5.58E-60 | -1.69E-46 |
MS.gene052134 | MS.gene064519 | 0.82207 | 2.88E-53 | -1.69E-46 |
MS.gene052135 | MS.gene064519 | 0.8386 | 2.61E-57 | -1.69E-46 |
MS.gene052136 | MS.gene064519 | 0.806871 | 6.67E-50 | -1.69E-46 |
MS.gene052188 | MS.gene064519 | 0.892277 | 1.84E-74 | -1.69E-46 |
MS.gene052253 | MS.gene064519 | 0.859035 | 5.46E-63 | -1.69E-46 |
MS.gene052255 | MS.gene064519 | 0.810018 | 1.42E-50 | -1.69E-46 |
MS.gene052310 | MS.gene064519 | 0.813099 | 3.04E-51 | -1.69E-46 |
MS.gene052340 | MS.gene064519 | 0.856726 | 2.65E-62 | -1.69E-46 |
MS.gene052414 | MS.gene064519 | 0.858044 | 1.08E-62 | -1.69E-46 |
MS.gene052485 | MS.gene064519 | 0.815689 | 8.13E-52 | -1.69E-46 |
MS.gene052758 | MS.gene064519 | 0.809947 | 1.47E-50 | -1.69E-46 |
MS.gene052762 | MS.gene064519 | 0.801389 | 9.21E-49 | -1.69E-46 |
MS.gene053169 | MS.gene064519 | 0.832306 | 1.02E-55 | -1.69E-46 |
MS.gene05316 | MS.gene064519 | 0.839044 | 2.00E-57 | -1.69E-46 |
MS.gene053494 | MS.gene064519 | 0.834678 | 2.61E-56 | -1.69E-46 |
MS.gene053555 | MS.gene064519 | 0.806627 | 7.50E-50 | -1.69E-46 |
MS.gene053557 | MS.gene064519 | 0.811512 | 6.75E-51 | -1.69E-46 |
MS.gene053758 | MS.gene064519 | 0.818893 | 1.55E-52 | -1.69E-46 |
MS.gene053836 | MS.gene064519 | 0.816558 | 5.20E-52 | -1.69E-46 |
MS.gene053928 | MS.gene064519 | 0.807022 | 6.19E-50 | -1.69E-46 |
MS.gene054102 | MS.gene064519 | 0.817442 | 3.29E-52 | -1.69E-46 |
MS.gene054123 | MS.gene064519 | 0.80069 | 1.28E-48 | -1.69E-46 |
MS.gene054183 | MS.gene064519 | 0.883993 | 2.80E-71 | -1.69E-46 |
MS.gene054349 | MS.gene064519 | 0.900137 | 9.89E-78 | -1.69E-46 |
MS.gene054556 | MS.gene064519 | 0.869082 | 4.04E-66 | -1.69E-46 |
MS.gene054719 | MS.gene064519 | 0.828505 | 8.66E-55 | -1.69E-46 |
MS.gene054918 | MS.gene064519 | 0.823443 | 1.38E-53 | -1.69E-46 |
MS.gene054920 | MS.gene064519 | 0.820777 | 5.73E-53 | -1.69E-46 |
MS.gene054930 | MS.gene064519 | 0.831951 | 1.25E-55 | -1.69E-46 |
MS.gene055116 | MS.gene064519 | 0.866627 | 2.48E-65 | -1.69E-46 |
MS.gene055369 | MS.gene064519 | 0.872194 | 3.84E-67 | -1.69E-46 |
MS.gene055539 | MS.gene064519 | 0.82897 | 6.69E-55 | -1.69E-46 |
MS.gene05553 | MS.gene064519 | 0.865333 | 6.37E-65 | -1.69E-46 |
MS.gene055604 | MS.gene064519 | 0.841839 | 3.73E-58 | -1.69E-46 |
MS.gene055666 | MS.gene064519 | 0.811762 | 5.95E-51 | -1.69E-46 |
MS.gene055741 | MS.gene064519 | 0.820046 | 8.44E-53 | -1.69E-46 |
MS.gene055744 | MS.gene064519 | 0.836547 | 8.78E-57 | -1.69E-46 |
MS.gene055911 | MS.gene064519 | 0.802833 | 4.65E-49 | -1.69E-46 |
MS.gene056233 | MS.gene064519 | 0.803046 | 4.20E-49 | -1.69E-46 |
MS.gene056407 | MS.gene064519 | 0.81066 | 1.03E-50 | -1.69E-46 |
MS.gene056511 | MS.gene064519 | 0.831531 | 1.58E-55 | -1.69E-46 |
MS.gene056514 | MS.gene064519 | 0.824209 | 9.14E-54 | -1.69E-46 |
MS.gene056659 | MS.gene064519 | 0.886343 | 3.71E-72 | -1.69E-46 |
MS.gene056723 | MS.gene064519 | 0.899319 | 2.23E-77 | -1.69E-46 |
MS.gene056876 | MS.gene064519 | 0.803502 | 3.38E-49 | -1.69E-46 |
MS.gene056899 | MS.gene064519 | -0.803596 | 3.23E-49 | -1.69E-46 |
MS.gene056979 | MS.gene064519 | 0.803917 | 2.77E-49 | -1.69E-46 |
MS.gene05702 | MS.gene064519 | 0.804345 | 2.26E-49 | -1.69E-46 |
MS.gene057124 | MS.gene064519 | 0.837696 | 4.46E-57 | -1.69E-46 |
MS.gene057396 | MS.gene064519 | 0.854417 | 1.25E-61 | -1.69E-46 |
MS.gene057448 | MS.gene064519 | 0.839468 | 1.56E-57 | -1.69E-46 |
MS.gene057449 | MS.gene064519 | 0.82143 | 4.05E-53 | -1.69E-46 |
MS.gene057450 | MS.gene064519 | 0.824062 | 9.89E-54 | -1.69E-46 |
MS.gene057469 | MS.gene064519 | 0.81054 | 1.10E-50 | -1.69E-46 |
MS.gene057476 | MS.gene064519 | 0.801609 | 8.30E-49 | -1.69E-46 |
MS.gene057537 | MS.gene064519 | 0.804707 | 1.90E-49 | -1.69E-46 |
MS.gene057749 | MS.gene064519 | 0.86593 | 4.13E-65 | -1.69E-46 |
MS.gene057823 | MS.gene064519 | 0.861649 | 8.85E-64 | -1.69E-46 |
MS.gene057824 | MS.gene064519 | 0.82348 | 1.35E-53 | -1.69E-46 |
MS.gene057825 | MS.gene064519 | 0.855531 | 5.93E-62 | -1.69E-46 |
MS.gene057826 | MS.gene064519 | 0.801732 | 7.84E-49 | -1.69E-46 |
MS.gene058002 | MS.gene064519 | 0.837288 | 5.68E-57 | -1.69E-46 |
MS.gene058007 | MS.gene064519 | 0.83235 | 9.94E-56 | -1.69E-46 |
MS.gene058090 | MS.gene064519 | 0.819864 | 9.28E-53 | -1.69E-46 |
MS.gene058120 | MS.gene064519 | 0.815459 | 9.15E-52 | -1.69E-46 |
MS.gene058142 | MS.gene064519 | 0.86013 | 2.56E-63 | -1.69E-46 |
MS.gene058365 | MS.gene064519 | 0.828927 | 6.85E-55 | -1.69E-46 |
MS.gene058700 | MS.gene064519 | 0.819283 | 1.26E-52 | -1.69E-46 |
MS.gene058710 | MS.gene064519 | 0.852081 | 5.83E-61 | -1.69E-46 |
MS.gene05886 | MS.gene064519 | 0.830208 | 3.34E-55 | -1.69E-46 |
MS.gene058928 | MS.gene064519 | 0.851394 | 9.13E-61 | -1.69E-46 |
MS.gene058948 | MS.gene064519 | 0.827245 | 1.74E-54 | -1.69E-46 |
MS.gene058949 | MS.gene064519 | 0.878714 | 2.25E-69 | -1.69E-46 |
MS.gene059011 | MS.gene064519 | 0.848841 | 4.74E-60 | -1.69E-46 |
MS.gene05907 | MS.gene064519 | 0.815154 | 1.07E-51 | -1.69E-46 |
MS.gene059082 | MS.gene064519 | 0.807806 | 4.22E-50 | -1.69E-46 |
MS.gene059141 | MS.gene064519 | 0.811932 | 5.47E-51 | -1.69E-46 |
MS.gene059285 | MS.gene064519 | 0.867677 | 1.15E-65 | -1.69E-46 |
MS.gene059294 | MS.gene064519 | 0.812856 | 3.43E-51 | -1.69E-46 |
MS.gene059366 | MS.gene064519 | 0.836704 | 8.01E-57 | -1.69E-46 |
MS.gene059420 | MS.gene064519 | 0.89316 | 8.14E-75 | -1.69E-46 |
MS.gene059462 | MS.gene064519 | 0.826872 | 2.14E-54 | -1.69E-46 |
MS.gene059597 | MS.gene064519 | 0.808804 | 2.59E-50 | -1.69E-46 |
MS.gene059688 | MS.gene064519 | 0.851829 | 6.88E-61 | -1.69E-46 |
MS.gene059692 | MS.gene064519 | 0.836651 | 8.26E-57 | -1.69E-46 |
MS.gene059695 | MS.gene064519 | 0.84008 | 1.08E-57 | -1.69E-46 |
MS.gene059807 | MS.gene064519 | 0.862054 | 6.65E-64 | -1.69E-46 |
MS.gene05984 | MS.gene064519 | 0.831645 | 1.48E-55 | -1.69E-46 |
MS.gene059876 | MS.gene064519 | 0.838451 | 2.85E-57 | -1.69E-46 |
MS.gene059946 | MS.gene064519 | 0.802093 | 6.61E-49 | -1.69E-46 |
MS.gene060247 | MS.gene064519 | 0.843272 | 1.55E-58 | -1.69E-46 |
MS.gene060407 | MS.gene064519 | 0.802561 | 5.29E-49 | -1.69E-46 |
MS.gene060495 | MS.gene064519 | 0.835155 | 1.98E-56 | -1.69E-46 |
MS.gene061049 | MS.gene064519 | 0.838321 | 3.08E-57 | -1.69E-46 |
MS.gene061051 | MS.gene064519 | -0.809916 | 1.49E-50 | -1.69E-46 |
MS.gene061114 | MS.gene064519 | -0.808239 | 3.41E-50 | -1.69E-46 |
MS.gene061154 | MS.gene064519 | 0.848734 | 5.07E-60 | -1.69E-46 |
MS.gene061159 | MS.gene064519 | 0.847073 | 1.46E-59 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064519.t1 | MTR_5g078290 | 97.658 | 427 | 10 | 0 | 1 | 427 | 1 | 427 | 0.0 | 853 |
MS.gene064519.t1 | MTR_5g078290 | 97.895 | 380 | 8 | 0 | 1 | 380 | 1 | 380 | 0.0 | 760 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064519.t1 | AT1G66330 | 68.405 | 326 | 86 | 2 | 104 | 418 | 81 | 400 | 6.25e-135 | 394 |
MS.gene064519.t1 | AT1G66330 | 68.405 | 326 | 86 | 2 | 104 | 418 | 81 | 400 | 6.25e-135 | 394 |
Find 93 sgRNAs with CRISPR-Local
Find 310 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAGAAATTCTGTCCCTAAAA+AGG | 0.241678 | 5.3:-63265810 | None:intergenic |
AGAACCACAAATTCCTTTCT+TGG | 0.277347 | 5.3:+63268132 | MS.gene064519:CDS |
GAGAAACTTTGCATCGTTAC+AGG | 0.311814 | 5.3:-63265305 | None:intergenic |
GATCCCTTATCTCTGAAAAT+AGG | 0.313256 | 5.3:-63268060 | None:intergenic |
CCGAAACCAGTCATTGAATA+AGG | 0.321628 | 5.3:-63264874 | None:intergenic |
CTGGAGTGACGGGGCCTTAG+AGG | 0.337435 | 5.3:+63266238 | MS.gene064519:CDS |
TCAAGGGTTAGACTCGAAAA+TGG | 0.338957 | 5.3:+63264813 | MS.gene064519:CDS |
GAAGCTAAACTAACCTCTTC+AGG | 0.339327 | 5.3:-63268367 | None:intergenic |
CCTTATTCAATGACTGGTTT+CGG | 0.341454 | 5.3:+63264874 | MS.gene064519:CDS |
GAACCACAAATTCCTTTCTT+GGG | 0.342712 | 5.3:+63268133 | MS.gene064519:CDS |
ATCTTCCATGGCACGTTGCT+TGG | 0.348175 | 5.3:-63267314 | None:intergenic |
GTCTTGGAGATTAAACTAAC+TGG | 0.351920 | 5.3:-63264915 | None:intergenic |
ACAGAATTTCTCAAACTTGA+TGG | 0.355828 | 5.3:+63265821 | MS.gene064519:CDS |
GATCGTATTCGTTCTGTTCG+TGG | 0.356798 | 5.3:+63265259 | MS.gene064519:CDS |
ATACAGTAGCAATACGATTA+AGG | 0.363525 | 5.3:-63266065 | None:intergenic |
ATTTAACAGATTTACCTCTA+AGG | 0.373384 | 5.3:-63266252 | None:intergenic |
AGTATCTATAGGAAGCTTAC+TGG | 0.373975 | 5.3:+63268296 | MS.gene064519:intron |
GATGCTGCAGCTGCAATGGC+TGG | 0.379748 | 5.3:-63269721 | None:intergenic |
TGATCTTCTGATGGCACTTA+CGG | 0.391058 | 5.3:+63264695 | None:intergenic |
ATAGGAAGCTTACTGGAGTA+TGG | 0.402823 | 5.3:+63268303 | MS.gene064519:intron |
CTCTCAGAAAATAATGTTAG+AGG | 0.404947 | 5.3:+63268084 | MS.gene064519:CDS |
TTTCAGTTCATATATAGCTT+TGG | 0.412176 | 5.3:-63269743 | None:intergenic |
ATATCACCTCCAAGGACATA+AGG | 0.415173 | 5.3:-63267339 | None:intergenic |
ATATCCACTGCAGATCTTGA+AGG | 0.418058 | 5.3:+63266175 | MS.gene064519:intron |
CCTTACCTGGTACCGACATC+AGG | 0.418804 | 5.3:-63268553 | None:intergenic |
AAATAGAAGAAGGGGATAGT+TGG | 0.418919 | 5.3:+63269776 | MS.gene064519:CDS |
GACTGGTTTCGGTTCATCAA+TGG | 0.425130 | 5.3:+63264885 | MS.gene064519:CDS |
TTTGGATGCTGCAGCTGCAA+TGG | 0.432658 | 5.3:-63269725 | None:intergenic |
CTCTTGGAAACGCAGGGATG+GGG | 0.434985 | 5.3:+63269259 | MS.gene064519:CDS |
CCGATGAGCACTGGAGTGAC+GGG | 0.435635 | 5.3:+63266228 | MS.gene064519:CDS |
AGAACGGATTACTGCTCTTC+AGG | 0.442816 | 5.3:+63268167 | MS.gene064519:CDS |
TCTGTCTCATGTAAATCAAC+AGG | 0.443072 | 5.3:+63264942 | MS.gene064519:CDS |
GGATAGTTGGAGGTTTATGA+TGG | 0.443543 | 5.3:+63269789 | MS.gene064519:CDS |
AACTGTATTCTGTTTATCCT+TGG | 0.449791 | 5.3:-63264789 | None:intergenic |
ACTCTTGGAAACGCAGGGAT+GGG | 0.451755 | 5.3:+63269258 | MS.gene064519:CDS |
CGAATCATGCTTGAAAAGAA+TGG | 0.454171 | 5.3:+63268108 | MS.gene064519:CDS |
CTGCATAGCTCGGGCAAGAA+AGG | 0.454178 | 5.3:+63265999 | MS.gene064519:intron |
TAGAAGAAGGGGATAGTTGG+AGG | 0.461239 | 5.3:+63269779 | MS.gene064519:CDS |
GGAAGATGCCCTTATGTCCT+TGG | 0.463046 | 5.3:+63267330 | MS.gene064519:CDS |
TAAACACAGTGTATCTTTGT+TGG | 0.464348 | 5.3:+63268513 | MS.gene064519:CDS |
TTTCCAAGAGTCCACATAGA+TGG | 0.475502 | 5.3:-63269246 | None:intergenic |
GCACCATCTATGTGGACTCT+TGG | 0.478002 | 5.3:+63269243 | MS.gene064519:CDS |
GATCAACCTTATTCAATGAC+TGG | 0.479668 | 5.3:+63264868 | MS.gene064519:CDS |
ACATGAGACAGAAGATGTCT+TGG | 0.481154 | 5.3:-63264931 | None:intergenic |
TATCACCTCCAAGGACATAA+GGG | 0.487860 | 5.3:-63267338 | None:intergenic |
GACTCTTGGAAACGCAGGGA+TGG | 0.489246 | 5.3:+63269257 | MS.gene064519:CDS |
GCCGATGAGCACTGGAGTGA+CGG | 0.489465 | 5.3:+63266227 | MS.gene064519:CDS |
GTTGCTCTATTAGTCAAGAT+AGG | 0.494347 | 5.3:-63264738 | None:intergenic |
ACGTTGCTTGGCACGGAAGT+CGG | 0.495141 | 5.3:-63267302 | None:intergenic |
ATCCCCAAGAAAGGAATTTG+TGG | 0.496739 | 5.3:-63268136 | None:intergenic |
TGCCGTCACATCCCCAAGAA+AGG | 0.509048 | 5.3:-63268145 | None:intergenic |
AGCAATGGGAAATAGAAGAA+GGG | 0.512568 | 5.3:+63269767 | MS.gene064519:CDS |
ATTTCTTCAGTGGCATAATG+AGG | 0.515220 | 5.3:+63265759 | MS.gene064519:intron |
AAGCAATGGGAAATAGAAGA+AGG | 0.516781 | 5.3:+63269766 | MS.gene064519:CDS |
AACCACAAATTCCTTTCTTG+GGG | 0.522590 | 5.3:+63268134 | MS.gene064519:CDS |
CCATGGCACGTTGCTTGGCA+CGG | 0.523891 | 5.3:-63267309 | None:intergenic |
AAAGTGCTGCCGATGAGCAC+TGG | 0.524125 | 5.3:+63266219 | MS.gene064519:CDS |
TTCCTTTCTTGGGGATGTGA+CGG | 0.526745 | 5.3:+63268143 | MS.gene064519:CDS |
GTTCCCCTGATGTCGGTACC+AGG | 0.542379 | 5.3:+63268548 | MS.gene064519:CDS |
CTTCAGTGGCATAATGAGGA+TGG | 0.542595 | 5.3:+63265763 | MS.gene064519:intron |
GGACATAAGGGCATCTTCCA+TGG | 0.546770 | 5.3:-63267326 | None:intergenic |
CCCGTCACTCCAGTGCTCAT+CGG | 0.553203 | 5.3:-63266228 | None:intergenic |
TCTTGGAAACGCAGGGATGG+GGG | 0.560998 | 5.3:+63269260 | MS.gene064519:CDS |
TCTTATAGACCTTGATGCAA+TGG | 0.567724 | 5.3:+63268486 | MS.gene064519:CDS |
CCGTGCCAAGCAACGTGCCA+TGG | 0.568141 | 5.3:+63267309 | MS.gene064519:CDS |
TCTGCACTTTCTGAAGCAGA+TGG | 0.572909 | 5.3:+63268328 | MS.gene064519:CDS |
TGATTACACTGATCCTGAAG+AGG | 0.574801 | 5.3:+63268354 | MS.gene064519:CDS |
ACGAGCTTTAGCGAAGGCAC+TGG | 0.575429 | 5.3:+63269215 | MS.gene064519:CDS |
CTTACCTGGTACCGACATCA+GGG | 0.576473 | 5.3:-63268552 | None:intergenic |
CTTGTTGTAGAGGCTGGCCG+AGG | 0.577303 | 5.3:+63269690 | MS.gene064519:intron |
ATGTGGACTCTTGGAAACGC+AGG | 0.578590 | 5.3:+63269252 | MS.gene064519:CDS |
GTTTACCGTCCATTGCATCA+AGG | 0.580602 | 5.3:-63268495 | None:intergenic |
GCAATGGGAAATAGAAGAAG+GGG | 0.584212 | 5.3:+63269768 | MS.gene064519:CDS |
CGATGAGCACTGGAGTGACG+GGG | 0.596211 | 5.3:+63266229 | MS.gene064519:CDS |
AGTATAAAATATCACCTCCA+AGG | 0.600169 | 5.3:-63267347 | None:intergenic |
GCTTGGCACGGAAGTCGGCA+AGG | 0.602685 | 5.3:-63267297 | None:intergenic |
TGGCAGCAGCACCATCTATG+TGG | 0.613054 | 5.3:+63269235 | MS.gene064519:CDS |
TGTTCTAGTTCCCCTGATGT+CGG | 0.616561 | 5.3:+63268541 | MS.gene064519:CDS |
TCTTGCTCACCATCATGTCA+TGG | 0.617464 | 5.3:-63267513 | None:intergenic |
TTGGGGATGTGACGGCAGAA+CGG | 0.619552 | 5.3:+63268151 | MS.gene064519:CDS |
TGTGGACTCTTGGAAACGCA+GGG | 0.628626 | 5.3:+63269253 | MS.gene064519:CDS |
GCAACACTTTGTAGATCACA+TGG | 0.633717 | 5.3:+63264756 | MS.gene064519:CDS |
TTCTAGACGAGCTTTAGCGA+AGG | 0.635480 | 5.3:+63269209 | MS.gene064519:intron |
AGATGCCCTTATGTCCTTGG+AGG | 0.646483 | 5.3:+63267333 | MS.gene064519:CDS |
ATAGACCTTGATGCAATGGA+CGG | 0.648829 | 5.3:+63268490 | MS.gene064519:CDS |
AATGGCTGGATTGCTATCCT+CGG | 0.650744 | 5.3:-63269707 | None:intergenic |
ACGGCAAACAAAGTTTCAAG+CGG | 0.658042 | 5.3:+63264714 | MS.gene064519:CDS |
ATGATGTTTCTGATTTGACT+CGG | 0.661077 | 5.3:+63265006 | MS.gene064519:CDS |
ACGATGCAAAGTTTCTCTCA+CGG | 0.666602 | 5.3:+63265311 | MS.gene064519:CDS |
CACATGGATCTTCATCACCA+AGG | 0.668703 | 5.3:+63264772 | MS.gene064519:CDS |
TATGATGGATGAAAGCAGCA+AGG | 0.691727 | 5.3:+63269804 | MS.gene064519:CDS |
TTACCTGGTACCGACATCAG+GGG | 0.705857 | 5.3:-63268551 | None:intergenic |
GATACTGAGAAAATCGACCG+TGG | 0.757796 | 5.3:+63266021 | MS.gene064519:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAAAAAAAAAAAAAAAA+AGG | - | chr5.3:63267412-63267431 | None:intergenic | 0.0% |
!! | ATAGAACAAATTTATTTATT+TGG | - | chr5.3:63267463-63267482 | None:intergenic | 10.0% |
!! | GTTTAAATAATTAAATACTA+CGG | - | chr5.3:63267851-63267870 | None:intergenic | 10.0% |
!! | TTATTTATAATTCATATGAA+TGG | + | chr5.3:63267218-63267237 | MS.gene064519:intron | 10.0% |
!!! | AATATATTTCTAAAAAGATA+TGG | - | chr5.3:63265446-63265465 | None:intergenic | 10.0% |
!!! | ACATTTAATTATTTAGAATA+TGG | - | chr5.3:63265669-63265688 | None:intergenic | 10.0% |
!!! | TTCTAAAAAAAATGATTTTA+AGG | - | chr5.3:63269463-63269482 | None:intergenic | 10.0% |
!! | AAAAAATAGTTACATTTCAA+TGG | - | chr5.3:63265911-63265930 | None:intergenic | 15.0% |
!! | AGTTTGACATATAATAAAAT+TGG | - | chr5.3:63265107-63265126 | None:intergenic | 15.0% |
!! | TATATCACATTATTTAAACA+AGG | - | chr5.3:63265859-63265878 | None:intergenic | 15.0% |
!! | TTAAAACCTTATAATTGAAA+TGG | + | chr5.3:63269127-63269146 | MS.gene064519:intron | 15.0% |
!!! | AAAAAAATGATTTTAAGGAA+TGG | - | chr5.3:63269458-63269477 | None:intergenic | 15.0% |
!!! | AAAAAATGATTTTAAGGAAT+GGG | - | chr5.3:63269457-63269476 | None:intergenic | 15.0% |
!!! | ATTTTATTATATGTCAAACT+AGG | + | chr5.3:63265107-63265126 | MS.gene064519:intron | 15.0% |
!!! | TCTTTTTAGAAATATATTGT+TGG | + | chr5.3:63265448-63265467 | MS.gene064519:intron | 15.0% |
!! | AAAATTGGCAACTAAAAAAA+TGG | - | chr5.3:63265092-63265111 | None:intergenic | 20.0% |
!! | AGTTTAAAAGTTATGTCAAA+AGG | - | chr5.3:63267261-63267280 | None:intergenic | 20.0% |
!! | ATATTTGTGTAACAATTTGT+TGG | + | chr5.3:63266360-63266379 | MS.gene064519:intron | 20.0% |
!! | CTAAAAAAATGGTAACAAAA+TGG | - | chr5.3:63265081-63265100 | None:intergenic | 20.0% |
!! | CTTTCTATTAATCAAGTTTA+TGG | - | chr5.3:63267893-63267912 | None:intergenic | 20.0% |
!! | GAAAGAATACTATTTATCAA+TGG | + | chr5.3:63266125-63266144 | MS.gene064519:intron | 20.0% |
!! | TAATTCAATATTGCATAACT+TGG | - | chr5.3:63268767-63268786 | None:intergenic | 20.0% |
!! | TTTCAATTACAATTGAAAAC+TGG | + | chr5.3:63265169-63265188 | MS.gene064519:intron | 20.0% |
!!! | AAAAATGATTTTAAGGAATG+GGG | - | chr5.3:63269456-63269475 | None:intergenic | 20.0% |
!!! | ACTAAGATTTTAGTATCTAT+AGG | + | chr5.3:63268285-63268304 | MS.gene064519:intron | 20.0% |
!!! | AGTGAAAATAGATTTTATAC+AGG | + | chr5.3:63266494-63266513 | MS.gene064519:intron | 20.0% |
!!! | CTCTATTTCTAAAAAATATG+TGG | + | chr5.3:63268827-63268846 | MS.gene064519:intron | 20.0% |
!!! | CTTAAAAATTGCTTTTATTG+TGG | - | chr5.3:63266882-63266901 | None:intergenic | 20.0% |
!!! | TACTCAAAAACTATTTTGAA+CGG | + | chr5.3:63265536-63265555 | MS.gene064519:intron | 20.0% |
!!! | TCTAGAATTTTCAATTTTTC+TGG | + | chr5.3:63266094-63266113 | MS.gene064519:intron | 20.0% |
!!! | TTAAAAAAAAGCATTTCTAG+TGG | - | chr5.3:63269574-63269593 | None:intergenic | 20.0% |
!!! | TTAACTAATTATTTCTTCAG+TGG | + | chr5.3:63265749-63265768 | MS.gene064519:intron | 20.0% |
! | AAAAATTGATCAAAAGTGAG+AGG | + | chr5.3:63266790-63266809 | MS.gene064519:intron | 25.0% |
! | AATAGAACCTGAAAAGAAAA+TGG | - | chr5.3:63268206-63268225 | None:intergenic | 25.0% |
! | AATCATACTAACAAACATCA+TGG | - | chr5.3:63268641-63268660 | None:intergenic | 25.0% |
! | AATTTAGCAATCATGATTAG+AGG | + | chr5.3:63265567-63265586 | MS.gene064519:intron | 25.0% |
! | AATTTCCGATACTATATTGT+TGG | + | chr5.3:63266293-63266312 | MS.gene064519:intron | 25.0% |
! | ACAAAAATTAGACTCATTGA+TGG | + | chr5.3:63266989-63267008 | MS.gene064519:intron | 25.0% |
! | ACAGATTAAAAGGATAAACA+AGG | + | chr5.3:63267014-63267033 | MS.gene064519:intron | 25.0% |
! | ACTAACCAACAATATAGTAT+CGG | - | chr5.3:63266301-63266320 | None:intergenic | 25.0% |
! | AGTGTAAAATATGTGAGTAT+AGG | + | chr5.3:63268908-63268927 | MS.gene064519:intron | 25.0% |
! | ATATGAACTGAAAAAGCAAT+GGG | + | chr5.3:63269753-63269772 | MS.gene064519:CDS | 25.0% |
! | ATATGAGATGATAATATGCT+AGG | - | chr5.3:63269041-63269060 | None:intergenic | 25.0% |
! | ATGAATGCATAAATAGTGAT+AGG | - | chr5.3:63268418-63268437 | None:intergenic | 25.0% |
! | ATTTAACAGATTTACCTCTA+AGG | - | chr5.3:63266255-63266274 | None:intergenic | 25.0% |
! | CTCATTATAGAAATCTGTAT+GGG | - | chr5.3:63267181-63267200 | None:intergenic | 25.0% |
! | CTGGAAAAGAATTCTTTAAT+CGG | + | chr5.3:63265482-63265501 | MS.gene064519:intron | 25.0% |
! | GATTGTATAGTGGTTATTAA+AGG | - | chr5.3:63265513-63265532 | None:intergenic | 25.0% |
! | GTTAGCATATAATTAGAATC+AGG | - | chr5.3:63265349-63265368 | None:intergenic | 25.0% |
! | TAAAATACTAATCCCTATTC+AGG | - | chr5.3:63269003-63269022 | None:intergenic | 25.0% |
! | TATATGAACTGAAAAAGCAA+TGG | + | chr5.3:63269752-63269771 | MS.gene064519:CDS | 25.0% |
! | TCATGATATATATGAACGTA+TGG | - | chr5.3:63268942-63268961 | None:intergenic | 25.0% |
! | TCCATTCAAAAAGAAAACTA+TGG | - | chr5.3:63267707-63267726 | None:intergenic | 25.0% |
! | TCTCATTATAGAAATCTGTA+TGG | - | chr5.3:63267182-63267201 | None:intergenic | 25.0% |
! | TGATTAGAGGAGTTATAATA+TGG | + | chr5.3:63265580-63265599 | MS.gene064519:intron | 25.0% |
! | TGTATGGGATAGTAATATAA+AGG | - | chr5.3:63267166-63267185 | None:intergenic | 25.0% |
! | TTAATATTTACTCATTCACC+CGG | + | chr5.3:63267750-63267769 | MS.gene064519:intron | 25.0% |
! | TTGAGTAATTGATTGTATAG+TGG | - | chr5.3:63265523-63265542 | None:intergenic | 25.0% |
! | TTGATACCATCTTAGAATAT+AGG | - | chr5.3:63266651-63266670 | None:intergenic | 25.0% |
! | TTTCAGTTCATATATAGCTT+TGG | - | chr5.3:63269746-63269765 | None:intergenic | 25.0% |
!! | AAACAGAATACAGTTTTCAA+GGG | + | chr5.3:63264797-63264816 | MS.gene064519:CDS | 25.0% |
!! | ACCATAGTTTTCTTTTTGAA+TGG | + | chr5.3:63267703-63267722 | MS.gene064519:intron | 25.0% |
!! | ATGATGTTTGTTAGTATGAT+TGG | + | chr5.3:63268640-63268659 | MS.gene064519:intron | 25.0% |
!! | TAAACAGAATACAGTTTTCA+AGG | + | chr5.3:63264796-63264815 | MS.gene064519:CDS | 25.0% |
!! | TTCTTTTCCATTTTCTTTTC+AGG | + | chr5.3:63268196-63268215 | MS.gene064519:intron | 25.0% |
!! | TTTTACACTTGCTCTTTATT+TGG | - | chr5.3:63268897-63268916 | None:intergenic | 25.0% |
!!! | AACAGAGACAACATTTTTTT+TGG | - | chr5.3:63265395-63265414 | None:intergenic | 25.0% |
AAAAACCAATTTACAAGGTG+AGG | - | chr5.3:63266607-63266626 | None:intergenic | 30.0% | |
AAAACCAATTTACAAGGTGA+GGG | - | chr5.3:63266606-63266625 | None:intergenic | 30.0% | |
AAATATGAAAAACGCAGACA+AGG | - | chr5.3:63267992-63268011 | None:intergenic | 30.0% | |
AAATGTGTCAACTTTGCTAA+AGG | - | chr5.3:63269666-63269685 | None:intergenic | 30.0% | |
AACAATTATTTCCACACATG+AGG | - | chr5.3:63265731-63265750 | None:intergenic | 30.0% | |
AACTGTATTCTGTTTATCCT+TGG | - | chr5.3:63264792-63264811 | None:intergenic | 30.0% | |
AATGTGTCAACTTTGCTAAA+GGG | - | chr5.3:63269665-63269684 | None:intergenic | 30.0% | |
ACAATATTAGAACTTGGGTT+TGG | - | chr5.3:63266858-63266877 | None:intergenic | 30.0% | |
ACAGAATTTCTCAAACTTGA+TGG | + | chr5.3:63265821-63265840 | MS.gene064519:CDS | 30.0% | |
AGTATAAAATATCACCTCCA+AGG | - | chr5.3:63267350-63267369 | None:intergenic | 30.0% | |
ATACAGTAGCAATACGATTA+AGG | - | chr5.3:63266068-63266087 | None:intergenic | 30.0% | |
ATGTTTCATTCGATGTTTGT+TGG | + | chr5.3:63267596-63267615 | MS.gene064519:intron | 30.0% | |
ATTGTTGGAGATATATGAAC+TGG | + | chr5.3:63265463-63265482 | MS.gene064519:intron | 30.0% | |
CAATATTATATCCTCATGTG+TGG | + | chr5.3:63265717-63265736 | MS.gene064519:intron | 30.0% | |
CCTACAAAAACCAATTTACA+AGG | - | chr5.3:63266612-63266631 | None:intergenic | 30.0% | |
CTCTCAGAAAATAATGTTAG+AGG | + | chr5.3:63268084-63268103 | MS.gene064519:CDS | 30.0% | |
CTGAAAGATCTTAACATCAA+AGG | - | chr5.3:63268581-63268600 | None:intergenic | 30.0% | |
CTTTGATGTTAAGATCTTTC+AGG | + | chr5.3:63268579-63268598 | MS.gene064519:intron | 30.0% | |
GAATAGTACAAACTCATACT+AGG | - | chr5.3:63268668-63268687 | None:intergenic | 30.0% | |
GAATCATTTGGATGTGATAT+GGG | + | chr5.3:63266764-63266783 | MS.gene064519:intron | 30.0% | |
GTCGATCATAAAACTTTATC+AGG | - | chr5.3:63268392-63268411 | None:intergenic | 30.0% | |
GTGGTACAATATTAGAACTT+GGG | - | chr5.3:63266863-63266882 | None:intergenic | 30.0% | |
TAAACACAGTGTATCTTTGT+TGG | + | chr5.3:63268513-63268532 | MS.gene064519:CDS | 30.0% | |
TAACAAACATCATGGCATAT+AGG | - | chr5.3:63268633-63268652 | None:intergenic | 30.0% | |
TAACATTCATAGAGATCACT+TGG | + | chr5.3:63268860-63268879 | MS.gene064519:intron | 30.0% | |
TAATATTTACTCATTCACCC+GGG | + | chr5.3:63267751-63267770 | MS.gene064519:intron | 30.0% | |
TATGCTAACAGTATTGTTTC+TGG | + | chr5.3:63265360-63265379 | MS.gene064519:intron | 30.0% | |
TCCTGATTCATACTGAATTA+GGG | - | chr5.3:63268246-63268265 | None:intergenic | 30.0% | |
TGAATCATTTGGATGTGATA+TGG | + | chr5.3:63266763-63266782 | MS.gene064519:intron | 30.0% | |
TGTACATTATCAGTGTAAAC+AGG | - | chr5.3:63266953-63266972 | None:intergenic | 30.0% | |
TGTGGTACAATATTAGAACT+TGG | - | chr5.3:63266864-63266883 | None:intergenic | 30.0% | |
TTCCTGATTCATACTGAATT+AGG | - | chr5.3:63268247-63268266 | None:intergenic | 30.0% | |
TTTAGCAAAGTTGACACATT+TGG | + | chr5.3:63269665-63269684 | MS.gene064519:intron | 30.0% | |
! | AAATGTAAGTTGACCATGTA+AGG | - | chr5.3:63265968-63265987 | None:intergenic | 30.0% |
! | AATGTAAGTTGACCATGTAA+GGG | - | chr5.3:63265967-63265986 | None:intergenic | 30.0% |
! | AGTCCTATTTTCAGAGATAA+GGG | + | chr5.3:63268057-63268076 | MS.gene064519:intron | 30.0% |
! | ATATTGCATAACTTGGTTTG+AGG | - | chr5.3:63268760-63268779 | None:intergenic | 30.0% |
! | ATGATGTTTCTGATTTGACT+CGG | + | chr5.3:63265006-63265025 | MS.gene064519:CDS | 30.0% |
! | ATTGATGGACACAGATTAAA+AGG | + | chr5.3:63267004-63267023 | MS.gene064519:intron | 30.0% |
! | ATTTTCGTCATTCTTTGACA+AGG | + | chr5.3:63268699-63268718 | MS.gene064519:intron | 30.0% |
! | CTCATAGTGTATTGATAAGA+AGG | + | chr5.3:63267625-63267644 | MS.gene064519:intron | 30.0% |
! | GACATAACTTTTAAACTGTC+AGG | + | chr5.3:63267264-63267283 | MS.gene064519:intron | 30.0% |
! | GTCTAATGTTTGAAGTGATA+TGG | + | chr5.3:63266550-63266569 | MS.gene064519:intron | 30.0% |
! | TACTTAAAGAGAGAGTACAA+AGG | - | chr5.3:63269092-63269111 | None:intergenic | 30.0% |
! | TATAATTAGAATCAGGTTGC+TGG | - | chr5.3:63265342-63265361 | None:intergenic | 30.0% |
! | TATTGCATAACTTGGTTTGA+GGG | - | chr5.3:63268759-63268778 | None:intergenic | 30.0% |
! | TGTCTTTCTTCTTATCGTTT+TGG | + | chr5.3:63265133-63265152 | MS.gene064519:intron | 30.0% |
!! | AAAAGGAGTCTTGTATTTTC+TGG | - | chr5.3:63267244-63267263 | None:intergenic | 30.0% |
!! | AATGAGAGATAAGAAGTGTT+TGG | + | chr5.3:63267195-63267214 | MS.gene064519:intron | 30.0% |
!! | ACGATCATTTTTCTCATCTT+CGG | - | chr5.3:63265245-63265264 | None:intergenic | 30.0% |
!! | CTGAAAAGGTGTTTATAAGA+GGG | + | chr5.3:63266574-63266593 | MS.gene064519:intron | 30.0% |
!!! | AGAGACAACATTTTTTTTGG+TGG | - | chr5.3:63265392-63265411 | None:intergenic | 30.0% |
!!! | CCTTGTAAATTGGTTTTTGT+AGG | + | chr5.3:63266609-63266628 | MS.gene064519:intron | 30.0% |
AAATAGAAGAAGGGGATAGT+TGG | + | chr5.3:63269776-63269795 | MS.gene064519:CDS | 35.0% | |
AACCACAAATTCCTTTCTTG+GGG | + | chr5.3:63268134-63268153 | MS.gene064519:CDS | 35.0% | |
AACCTACAAAACAGGTTTGT+AGG | - | chr5.3:63266826-63266845 | None:intergenic | 35.0% | |
AAGCAATGGGAAATAGAAGA+AGG | + | chr5.3:63269766-63269785 | MS.gene064519:CDS | 35.0% | |
ACATCCAAATGATTCACTGT+GGG | - | chr5.3:63266759-63266778 | None:intergenic | 35.0% | |
ACCTACAAAACAGGTTTGTA+GGG | - | chr5.3:63266825-63266844 | None:intergenic | 35.0% | |
ACTGTCACATTAATCTGCAA+TGG | - | chr5.3:63266477-63266496 | None:intergenic | 35.0% | |
AGAACCACAAATTCCTTTCT+TGG | + | chr5.3:63268132-63268151 | MS.gene064519:CDS | 35.0% | |
AGCAACTCTGTAATTAAGTG+TGG | - | chr5.3:63267123-63267142 | None:intergenic | 35.0% | |
AGCAATGGGAAATAGAAGAA+GGG | + | chr5.3:63269767-63269786 | MS.gene064519:CDS | 35.0% | |
AGTATCTATAGGAAGCTTAC+TGG | + | chr5.3:63268296-63268315 | MS.gene064519:intron | 35.0% | |
ATATCCCTCACCTTGTAAAT+TGG | + | chr5.3:63266599-63266618 | MS.gene064519:intron | 35.0% | |
ATTTCTTCAGTGGCATAATG+AGG | + | chr5.3:63265759-63265778 | MS.gene064519:intron | 35.0% | |
CAAAAACATCCATGACATGA+TGG | + | chr5.3:63267504-63267523 | MS.gene064519:CDS | 35.0% | |
CACTGTAGTTGTCTAATACT+TGG | + | chr5.3:63266719-63266738 | MS.gene064519:intron | 35.0% | |
CATTGTCAGAAAAGCAAACT+CGG | - | chr5.3:63268028-63268047 | None:intergenic | 35.0% | |
CCTGATTCATACTGAATTAG+GGG | - | chr5.3:63268245-63268264 | None:intergenic | 35.0% | |
CGAATCATGCTTGAAAAGAA+TGG | + | chr5.3:63268108-63268127 | MS.gene064519:CDS | 35.0% | |
CGCTAGCCATTTCAATTATA+AGG | - | chr5.3:63269136-63269155 | None:intergenic | 35.0% | |
GAACCACAAATTCCTTTCTT+GGG | + | chr5.3:63268133-63268152 | MS.gene064519:CDS | 35.0% | |
GAGAAATTCTGTCCCTAAAA+AGG | - | chr5.3:63265813-63265832 | None:intergenic | 35.0% | |
GATCAACCTTATTCAATGAC+TGG | + | chr5.3:63264868-63264887 | MS.gene064519:CDS | 35.0% | |
GTCAAAACATTCTCAATTGC+AGG | + | chr5.3:63268721-63268740 | MS.gene064519:intron | 35.0% | |
GTCTTGGAGATTAAACTAAC+TGG | - | chr5.3:63264918-63264937 | None:intergenic | 35.0% | |
GTTGCTCTATTAGTCAAGAT+AGG | - | chr5.3:63264741-63264760 | None:intergenic | 35.0% | |
TAAATACTACGGTCCAGTTT+GGG | - | chr5.3:63267840-63267859 | None:intergenic | 35.0% | |
TCTGTCTCATGTAAATCAAC+AGG | + | chr5.3:63264942-63264961 | MS.gene064519:CDS | 35.0% | |
TCTTATAGACCTTGATGCAA+TGG | + | chr5.3:63268486-63268505 | MS.gene064519:CDS | 35.0% | |
TGAGATGATAATATGCTAGG+TGG | - | chr5.3:63269038-63269057 | None:intergenic | 35.0% | |
TGGACAAGGAAAATAAGCAA+AGG | - | chr5.3:63269178-63269197 | None:intergenic | 35.0% | |
TTAAATACTACGGTCCAGTT+TGG | - | chr5.3:63267841-63267860 | None:intergenic | 35.0% | |
! | AAAGGATAAACAAGGTGTTC+TGG | + | chr5.3:63267022-63267041 | MS.gene064519:intron | 35.0% |
! | ACTCGAGCTGACTTAAATAT+TGG | + | chr5.3:63265609-63265628 | MS.gene064519:intron | 35.0% |
! | ATGTAAGTTGACCATGTAAG+GGG | - | chr5.3:63265966-63265985 | None:intergenic | 35.0% |
! | CAGTCCTATTTTCAGAGATA+AGG | + | chr5.3:63268056-63268075 | MS.gene064519:intron | 35.0% |
! | CCTCTTATAAACACCTTTTC+AGG | - | chr5.3:63266576-63266595 | None:intergenic | 35.0% |
! | GATCCCTTATCTCTGAAAAT+AGG | - | chr5.3:63268063-63268082 | None:intergenic | 35.0% |
! | GCTGAACCTATATTCTAAGA+TGG | + | chr5.3:63266642-63266661 | MS.gene064519:intron | 35.0% |
!! | ACATTTGGTTCTTGTTGTAG+AGG | + | chr5.3:63269680-63269699 | MS.gene064519:intron | 35.0% |
!! | CCTGAAAAGGTGTTTATAAG+AGG | + | chr5.3:63266573-63266592 | MS.gene064519:intron | 35.0% |
!! | CCTTATTCAATGACTGGTTT+CGG | + | chr5.3:63264874-63264893 | MS.gene064519:CDS | 35.0% |
!! | GGTTTTTGTAGGTTTGAGTT+AGG | + | chr5.3:63266620-63266639 | MS.gene064519:intron | 35.0% |
!! | TAGCTTTTTCTTTGACACCA+CGG | - | chr5.3:63266041-63266060 | None:intergenic | 35.0% |
!! | TTGCTTTTCTGACAATGTTG+TGG | + | chr5.3:63268031-63268050 | MS.gene064519:intron | 35.0% |
AAATACTACGGTCCAGTTTG+GGG | - | chr5.3:63267839-63267858 | None:intergenic | 40.0% | |
AACATCAAAGGAACCTTACC+TGG | - | chr5.3:63268569-63268588 | None:intergenic | 40.0% | |
AAGGTTCCTAAGTGAACACA+TGG | - | chr5.3:63267394-63267413 | None:intergenic | 40.0% | |
ACATGAGACAGAAGATGTCT+TGG | - | chr5.3:63264934-63264953 | None:intergenic | 40.0% | |
ACGATGCAAAGTTTCTCTCA+CGG | + | chr5.3:63265311-63265330 | MS.gene064519:CDS | 40.0% | |
ACGGCAAACAAAGTTTCAAG+CGG | + | chr5.3:63264714-63264733 | MS.gene064519:CDS | 40.0% | |
AGCCAATTGTGTCTACATCT+CGG | - | chr5.3:63267937-63267956 | None:intergenic | 40.0% | |
ATAGACCTTGATGCAATGGA+CGG | + | chr5.3:63268490-63268509 | MS.gene064519:CDS | 40.0% | |
ATAGGAAGCTTACTGGAGTA+TGG | + | chr5.3:63268303-63268322 | MS.gene064519:intron | 40.0% | |
ATATCACCTCCAAGGACATA+AGG | - | chr5.3:63267342-63267361 | None:intergenic | 40.0% | |
ATATCCACTGCAGATCTTGA+AGG | + | chr5.3:63266175-63266194 | MS.gene064519:intron | 40.0% | |
ATATCCTTCAAGATCTGCAG+TGG | - | chr5.3:63266182-63266201 | None:intergenic | 40.0% | |
ATCATGGCATATAGGTGCAT+TGG | - | chr5.3:63268625-63268644 | None:intergenic | 40.0% | |
ATCCCCAAGAAAGGAATTTG+TGG | - | chr5.3:63268139-63268158 | None:intergenic | 40.0% | |
ATGTCTCCTGTACATGTGAA+AGG | - | chr5.3:63265221-63265240 | None:intergenic | 40.0% | |
CACATCCAAATGATTCACTG+TGG | - | chr5.3:63266760-63266779 | None:intergenic | 40.0% | |
CCAACTCAAACCTACAAAAC+AGG | - | chr5.3:63266834-63266853 | None:intergenic | 40.0% | |
CCCCTAATTCAGTATGAATC+AGG | + | chr5.3:63268242-63268261 | MS.gene064519:intron | 40.0% | |
CCGAAACCAGTCATTGAATA+AGG | - | chr5.3:63264877-63264896 | None:intergenic | 40.0% | |
CGTCTAGAAGTTTACATGCA+TGG | - | chr5.3:63269198-63269217 | None:intergenic | 40.0% | |
GAAGCTAAACTAACCTCTTC+AGG | - | chr5.3:63268370-63268389 | None:intergenic | 40.0% | |
GAAGTTTACATGCATGGACA+AGG | - | chr5.3:63269192-63269211 | None:intergenic | 40.0% | |
GAGAAACTTTGCATCGTTAC+AGG | - | chr5.3:63265308-63265327 | None:intergenic | 40.0% | |
GCAACACTTTGTAGATCACA+TGG | + | chr5.3:63264756-63264775 | MS.gene064519:CDS | 40.0% | |
GCAATGGGAAATAGAAGAAG+GGG | + | chr5.3:63269768-63269787 | MS.gene064519:CDS | 40.0% | |
GGATAGTTGGAGGTTTATGA+TGG | + | chr5.3:63269789-63269808 | MS.gene064519:CDS | 40.0% | |
GTCACATTAATCTGCAATGG+AGG | - | chr5.3:63266474-63266493 | None:intergenic | 40.0% | |
TACACTACATTCCCCTTACA+TGG | + | chr5.3:63265952-63265971 | MS.gene064519:intron | 40.0% | |
TACTTCGCATGTGTTCACTT+AGG | + | chr5.3:63267366-63267385 | MS.gene064519:intron | 40.0% | |
TAGGAACCATGTGTTCACTT+AGG | + | chr5.3:63267385-63267404 | MS.gene064519:intron | 40.0% | |
TATCACCTCCAAGGACATAA+GGG | - | chr5.3:63267341-63267360 | None:intergenic | 40.0% | |
TCAAGGGTTAGACTCGAAAA+TGG | + | chr5.3:63264813-63264832 | MS.gene064519:CDS | 40.0% | |
TCCCTAAAAAGGCAACATCT+TGG | - | chr5.3:63265802-63265821 | None:intergenic | 40.0% | |
TGAAAAACGCAGACAAGGAA+AGG | - | chr5.3:63267987-63268006 | None:intergenic | 40.0% | |
TGAAGTGATATGGCCTGAAA+AGG | + | chr5.3:63266560-63266579 | MS.gene064519:intron | 40.0% | |
TGATTACACTGATCCTGAAG+AGG | + | chr5.3:63268354-63268373 | MS.gene064519:CDS | 40.0% | |
TGCAATGGAGGAGAAAAACT+AGG | - | chr5.3:63266462-63266481 | None:intergenic | 40.0% | |
TGTCTCCTGTACATGTGAAA+GGG | - | chr5.3:63265220-63265239 | None:intergenic | 40.0% | |
TTCCGAGATGTAGACACAAT+TGG | + | chr5.3:63267932-63267951 | MS.gene064519:intron | 40.0% | |
TTTCCAAGAGTCCACATAGA+TGG | - | chr5.3:63269249-63269268 | None:intergenic | 40.0% | |
! | ACACTTGCTCTTTATTTGGC+AGG | - | chr5.3:63268893-63268912 | None:intergenic | 40.0% |
! | ACCCTACAAACCTGTTTTGT+AGG | + | chr5.3:63266821-63266840 | MS.gene064519:intron | 40.0% |
! | CCTGTTTTGTAGGTTTGAGT+TGG | + | chr5.3:63266831-63266850 | MS.gene064519:intron | 40.0% |
! | GCCAAGATGTTGCCTTTTTA+GGG | + | chr5.3:63265798-63265817 | MS.gene064519:CDS | 40.0% |
!! | TATGATGGATGAAAGCAGCA+AGG | + | chr5.3:63269804-63269823 | MS.gene064519:CDS | 40.0% |
AATACTACGGTCCAGTTTGG+GGG | - | chr5.3:63267838-63267857 | None:intergenic | 45.0% | |
AATGGCTGGATTGCTATCCT+CGG | - | chr5.3:63269710-63269729 | None:intergenic | 45.0% | |
AGAGACCCTTTCACATGTAC+AGG | + | chr5.3:63265212-63265231 | MS.gene064519:intron | 45.0% | |
CACATGGATCTTCATCACCA+AGG | + | chr5.3:63264772-63264791 | MS.gene064519:CDS | 45.0% | |
CCAGGGGTAATCTTGTAAAC+TGG | + | chr5.3:63267680-63267699 | MS.gene064519:intron | 45.0% | |
CCAGTTTACAAGATTACCCC+TGG | - | chr5.3:63267683-63267702 | None:intergenic | 45.0% | |
CTACATCTCGGAATTCAGAG+CGG | - | chr5.3:63267925-63267944 | None:intergenic | 45.0% | |
CTCTACTATGCTGCATAGCT+CGG | + | chr5.3:63265989-63266008 | MS.gene064519:intron | 45.0% | |
CTTCAGTGGCATAATGAGGA+TGG | + | chr5.3:63265763-63265782 | MS.gene064519:intron | 45.0% | |
GAGGTCTTGAATTCAAACCC+GGG | - | chr5.3:63267771-63267790 | None:intergenic | 45.0% | |
GAGTCCCACAGTGAATCATT+TGG | + | chr5.3:63266752-63266771 | MS.gene064519:intron | 45.0% | |
GATACTGAGAAAATCGACCG+TGG | + | chr5.3:63266021-63266040 | MS.gene064519:CDS | 45.0% | |
GATCGTATTCGTTCTGTTCG+TGG | + | chr5.3:63265259-63265278 | MS.gene064519:CDS | 45.0% | |
GGAGGTCTTGAATTCAAACC+CGG | - | chr5.3:63267772-63267791 | None:intergenic | 45.0% | |
GTGTGGCATGACATCTTGTT+GGG | + | chr5.3:63267077-63267096 | MS.gene064519:intron | 45.0% | |
GTTTACCGTCCATTGCATCA+AGG | - | chr5.3:63268498-63268517 | None:intergenic | 45.0% | |
TAGAAGAAGGGGATAGTTGG+AGG | + | chr5.3:63269779-63269798 | MS.gene064519:CDS | 45.0% | |
TCTACTATGCTGCATAGCTC+GGG | + | chr5.3:63265990-63266009 | MS.gene064519:intron | 45.0% | |
TCTTGCTCACCATCATGTCA+TGG | - | chr5.3:63267516-63267535 | None:intergenic | 45.0% | |
TTCCTTTCTTGGGGATGTGA+CGG | + | chr5.3:63268143-63268162 | MS.gene064519:CDS | 45.0% | |
! | AGGTGTTCTGGTAATGAGCA+TGG | + | chr5.3:63267034-63267053 | MS.gene064519:intron | 45.0% |
! | ATCCGTGAGCCACTCATTTT+CGG | + | chr5.3:63266683-63266702 | MS.gene064519:intron | 45.0% |
! | ATCGGCAGCACTTTTCAATC+TGG | - | chr5.3:63266213-63266232 | None:intergenic | 45.0% |
! | CGCCAAGATGTTGCCTTTTT+AGG | + | chr5.3:63265797-63265816 | MS.gene064519:CDS | 45.0% |
! | GGTGTTCTGGTAATGAGCAT+GGG | + | chr5.3:63267035-63267054 | MS.gene064519:intron | 45.0% |
! | GTATTGATAAGAAGGCTGCG+TGG | + | chr5.3:63267633-63267652 | MS.gene064519:intron | 45.0% |
! | TTCTAGACGAGCTTTAGCGA+AGG | + | chr5.3:63269209-63269228 | MS.gene064519:intron | 45.0% |
! | TTCTGGTAATGAGCATGGGT+TGG | + | chr5.3:63267039-63267058 | MS.gene064519:intron | 45.0% |
! | TTGGTTCTTGTTGTAGAGGC+TGG | + | chr5.3:63269684-63269703 | MS.gene064519:intron | 45.0% |
!! | AGAACGGATTACTGCTCTTC+AGG | + | chr5.3:63268167-63268186 | MS.gene064519:CDS | 45.0% |
!! | GACTGGTTTCGGTTCATCAA+TGG | + | chr5.3:63264885-63264904 | MS.gene064519:CDS | 45.0% |
!! | TCTGCACTTTCTGAAGCAGA+TGG | + | chr5.3:63268328-63268347 | MS.gene064519:CDS | 45.0% |
!! | TGTTCTAGTTCCCCTGATGT+CGG | + | chr5.3:63268541-63268560 | MS.gene064519:CDS | 45.0% |
ACTCTTGGAAACGCAGGGAT+GGG | + | chr5.3:63269258-63269277 | MS.gene064519:CDS | 50.0% | |
AGATGCCCTTATGTCCTTGG+AGG | + | chr5.3:63267333-63267352 | MS.gene064519:CDS | 50.0% | |
ATACTACGGTCCAGTTTGGG+GGG | - | chr5.3:63267837-63267856 | None:intergenic | 50.0% | |
ATCTTCCATGGCACGTTGCT+TGG | - | chr5.3:63267317-63267336 | None:intergenic | 50.0% | |
ATGTGGACTCTTGGAAACGC+AGG | + | chr5.3:63269252-63269271 | MS.gene064519:CDS | 50.0% | |
ATTACCCCTGGACCATACCA+CGG | - | chr5.3:63267671-63267690 | None:intergenic | 50.0% | |
CCTCCAACTCCTTTAACCCT+CGG | + | chr5.3:63267787-63267806 | MS.gene064519:intron | 50.0% | |
GCACCATCTATGTGGACTCT+TGG | + | chr5.3:63269243-63269262 | MS.gene064519:CDS | 50.0% | |
GGAAGATGCCCTTATGTCCT+TGG | + | chr5.3:63267330-63267349 | MS.gene064519:CDS | 50.0% | |
GGTGTGGCATGACATCTTGT+TGG | + | chr5.3:63267076-63267095 | MS.gene064519:intron | 50.0% | |
GTCCGAAAATGAGTGGCTCA+CGG | - | chr5.3:63266688-63266707 | None:intergenic | 50.0% | |
GTGGCTCACGGATCTTTGAT+AGG | - | chr5.3:63266676-63266695 | None:intergenic | 50.0% | |
TGATAAGAAGGCTGCGTGGA+GGG | + | chr5.3:63267637-63267656 | MS.gene064519:intron | 50.0% | |
TGGTTTGAGCCGAGGGTTAA+AGG | - | chr5.3:63267799-63267818 | None:intergenic | 50.0% | |
TGTGGACTCTTGGAAACGCA+GGG | + | chr5.3:63269253-63269272 | MS.gene064519:CDS | 50.0% | |
TTGATAAGAAGGCTGCGTGG+AGG | + | chr5.3:63267636-63267655 | MS.gene064519:intron | 50.0% | |
TTTGGATGCTGCAGCTGCAA+TGG | - | chr5.3:63269728-63269747 | None:intergenic | 50.0% | |
! | CACTCATTTTCGGACCACTC+GGG | + | chr5.3:63266693-63266712 | MS.gene064519:intron | 50.0% |
! | CCACTCATTTTCGGACCACT+CGG | + | chr5.3:63266692-63266711 | MS.gene064519:intron | 50.0% |
!! | AACTCAACTGGTTTGAGCCG+AGG | - | chr5.3:63267807-63267826 | None:intergenic | 50.0% |
!! | ACTCAACTGGTTTGAGCCGA+GGG | - | chr5.3:63267806-63267825 | None:intergenic | 50.0% |
!! | CTTACCTGGTACCGACATCA+GGG | - | chr5.3:63268555-63268574 | None:intergenic | 50.0% |
!! | GGACATAAGGGCATCTTCCA+TGG | - | chr5.3:63267329-63267348 | None:intergenic | 50.0% |
!! | GGGTTGGTGTTGTCACACAT+GGG | + | chr5.3:63267055-63267074 | MS.gene064519:intron | 50.0% |
!! | TGGGTTGGTGTTGTCACACA+TGG | + | chr5.3:63267054-63267073 | MS.gene064519:intron | 50.0% |
!! | TTACCTGGTACCGACATCAG+GGG | - | chr5.3:63268554-63268573 | None:intergenic | 50.0% |
ACGTTGCTTGGCACGGAAGT+CGG | - | chr5.3:63267305-63267324 | None:intergenic | 55.0% | |
CAACTACAGTGTGACCCGAG+TGG | - | chr5.3:63266710-63266729 | None:intergenic | 55.0% | |
CCGAGGGTTAAAGGAGTTGG+AGG | - | chr5.3:63267790-63267809 | None:intergenic | 55.0% | |
CCGAGTGGTCCGAAAATGAG+TGG | - | chr5.3:63266695-63266714 | None:intergenic | 55.0% | |
CCTGATGTCGGTACCAGGTA+AGG | + | chr5.3:63268553-63268572 | MS.gene064519:intron | 55.0% | |
CTCTTGGAAACGCAGGGATG+GGG | + | chr5.3:63269259-63269278 | MS.gene064519:CDS | 55.0% | |
CTGCATAGCTCGGGCAAGAA+AGG | + | chr5.3:63265999-63266018 | MS.gene064519:intron | 55.0% | |
GACTCTTGGAAACGCAGGGA+TGG | + | chr5.3:63269257-63269276 | MS.gene064519:CDS | 55.0% | |
GAGCCGAGGGTTAAAGGAGT+TGG | - | chr5.3:63267793-63267812 | None:intergenic | 55.0% | |
TACTACGGTCCAGTTTGGGG+GGG | - | chr5.3:63267836-63267855 | None:intergenic | 55.0% | |
TCTTGGAAACGCAGGGATGG+GGG | + | chr5.3:63269260-63269279 | MS.gene064519:CDS | 55.0% | |
TGCCGTCACATCCCCAAGAA+AGG | - | chr5.3:63268148-63268167 | None:intergenic | 55.0% | |
TGGCAGCAGCACCATCTATG+TGG | + | chr5.3:63269235-63269254 | MS.gene064519:CDS | 55.0% | |
TTACCCCTGGACCATACCAC+GGG | - | chr5.3:63267670-63267689 | None:intergenic | 55.0% | |
TTGGGGATGTGACGGCAGAA+CGG | + | chr5.3:63268151-63268170 | MS.gene064519:CDS | 55.0% | |
! | ACGAGCTTTAGCGAAGGCAC+TGG | + | chr5.3:63269215-63269234 | MS.gene064519:CDS | 55.0% |
! | GGTGTTGTCACACATGGGTG+TGG | + | chr5.3:63267060-63267079 | MS.gene064519:intron | 55.0% |
!! | AAAGTGCTGCCGATGAGCAC+TGG | + | chr5.3:63266219-63266238 | MS.gene064519:CDS | 55.0% |
!! | CCTTACCTGGTACCGACATC+AGG | - | chr5.3:63268556-63268575 | None:intergenic | 55.0% |
CCATGGCACGTTGCTTGGCA+CGG | - | chr5.3:63267312-63267331 | None:intergenic | 60.0% | |
CCCGTCACTCCAGTGCTCAT+CGG | - | chr5.3:63266231-63266250 | None:intergenic | 60.0% | |
GATGCTGCAGCTGCAATGGC+TGG | - | chr5.3:63269724-63269743 | None:intergenic | 60.0% | |
GGGGGGTTGGGTAACTCAAC+TGG | - | chr5.3:63267819-63267838 | None:intergenic | 60.0% | |
GTTACCCAACCCCCCCAAAC+TGG | + | chr5.3:63267824-63267843 | MS.gene064519:intron | 60.0% | |
GTTCCCCTGATGTCGGTACC+AGG | + | chr5.3:63268548-63268567 | MS.gene064519:CDS | 60.0% | |
TACCCCTGGACCATACCACG+GGG | - | chr5.3:63267669-63267688 | None:intergenic | 60.0% | |
! | CTTGTTGTAGAGGCTGGCCG+AGG | + | chr5.3:63269690-63269709 | MS.gene064519:intron | 60.0% |
!! | CCGATGAGCACTGGAGTGAC+GGG | + | chr5.3:63266228-63266247 | MS.gene064519:CDS | 60.0% |
!! | CGATGAGCACTGGAGTGACG+GGG | + | chr5.3:63266229-63266248 | MS.gene064519:CDS | 60.0% |
!! | GCCGATGAGCACTGGAGTGA+CGG | + | chr5.3:63266227-63266246 | MS.gene064519:CDS | 60.0% |
AAGCCCCCGTGGTATGGTCC+AGG | + | chr5.3:63267662-63267681 | MS.gene064519:intron | 65.0% | |
ACCCCTGGACCATACCACGG+GGG | - | chr5.3:63267668-63267687 | None:intergenic | 65.0% | |
ACGGTCCAGTTTGGGGGGGT+TGG | - | chr5.3:63267832-63267851 | None:intergenic | 65.0% | |
AGCCCCCGTGGTATGGTCCA+GGG | + | chr5.3:63267663-63267682 | MS.gene064519:intron | 65.0% | |
AGGGTGAAGCCCCCGTGGTA+TGG | + | chr5.3:63267656-63267675 | MS.gene064519:intron | 65.0% | |
CCGTGCCAAGCAACGTGCCA+TGG | + | chr5.3:63267309-63267328 | MS.gene064519:CDS | 65.0% | |
CGGTCCAGTTTGGGGGGGTT+GGG | - | chr5.3:63267831-63267850 | None:intergenic | 65.0% | |
GCTTGGCACGGAAGTCGGCA+AGG | - | chr5.3:63267300-63267319 | None:intergenic | 65.0% | |
! | CTGGAGTGACGGGGCCTTAG+AGG | + | chr5.3:63266238-63266257 | MS.gene064519:CDS | 65.0% |
!! | CGCAGGGATGGGGGCATTAC+AGG | + | chr5.3:63269269-63269288 | MS.gene064519:CDS | 65.0% |
GCCCCCGTGGTATGGTCCAG+GGG | + | chr5.3:63267664-63267683 | MS.gene064519:intron | 70.0% | |
CGTGGAGGGTGAAGCCCCCG+TGG | + | chr5.3:63267651-63267670 | MS.gene064519:intron | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.3 | gene | 63264705 | 63269843 | 63264705 | ID=MS.gene064519 |
chr5.3 | mRNA | 63264705 | 63269843 | 63264705 | ID=MS.gene064519.t1;Parent=MS.gene064519 |
chr5.3 | exon | 63264705 | 63265027 | 63264705 | ID=MS.gene064519.t1.exon1;Parent=MS.gene064519.t1 |
chr5.3 | CDS | 63264705 | 63265027 | 63264705 | ID=cds.MS.gene064519.t1;Parent=MS.gene064519.t1 |
chr5.3 | exon | 63265234 | 63265332 | 63265234 | ID=MS.gene064519.t1.exon2;Parent=MS.gene064519.t1 |
chr5.3 | CDS | 63265234 | 63265332 | 63265234 | ID=cds.MS.gene064519.t1;Parent=MS.gene064519.t1 |
chr5.3 | exon | 63265769 | 63265842 | 63265769 | ID=MS.gene064519.t1.exon3;Parent=MS.gene064519.t1 |
chr5.3 | CDS | 63265769 | 63265842 | 63265769 | ID=cds.MS.gene064519.t1;Parent=MS.gene064519.t1 |
chr5.3 | exon | 63266007 | 63266083 | 63266007 | ID=MS.gene064519.t1.exon4;Parent=MS.gene064519.t1 |
chr5.3 | CDS | 63266007 | 63266083 | 63266007 | ID=cds.MS.gene064519.t1;Parent=MS.gene064519.t1 |
chr5.3 | exon | 63266188 | 63266259 | 63266188 | ID=MS.gene064519.t1.exon5;Parent=MS.gene064519.t1 |
chr5.3 | CDS | 63266188 | 63266259 | 63266188 | ID=cds.MS.gene064519.t1;Parent=MS.gene064519.t1 |
chr5.3 | exon | 63267286 | 63267354 | 63267286 | ID=MS.gene064519.t1.exon6;Parent=MS.gene064519.t1 |
chr5.3 | CDS | 63267286 | 63267354 | 63267286 | ID=cds.MS.gene064519.t1;Parent=MS.gene064519.t1 |
chr5.3 | exon | 63267499 | 63267545 | 63267499 | ID=MS.gene064519.t1.exon7;Parent=MS.gene064519.t1 |
chr5.3 | CDS | 63267499 | 63267545 | 63267499 | ID=cds.MS.gene064519.t1;Parent=MS.gene064519.t1 |
chr5.3 | exon | 63268059 | 63268188 | 63268059 | ID=MS.gene064519.t1.exon8;Parent=MS.gene064519.t1 |
chr5.3 | CDS | 63268059 | 63268188 | 63268059 | ID=cds.MS.gene064519.t1;Parent=MS.gene064519.t1 |
chr5.3 | exon | 63268307 | 63268375 | 63268307 | ID=MS.gene064519.t1.exon9;Parent=MS.gene064519.t1 |
chr5.3 | CDS | 63268307 | 63268375 | 63268307 | ID=cds.MS.gene064519.t1;Parent=MS.gene064519.t1 |
chr5.3 | exon | 63268466 | 63268569 | 63268466 | ID=MS.gene064519.t1.exon10;Parent=MS.gene064519.t1 |
chr5.3 | CDS | 63268466 | 63268569 | 63268466 | ID=cds.MS.gene064519.t1;Parent=MS.gene064519.t1 |
chr5.3 | exon | 63269215 | 63269290 | 63269215 | ID=MS.gene064519.t1.exon11;Parent=MS.gene064519.t1 |
chr5.3 | CDS | 63269215 | 63269290 | 63269215 | ID=cds.MS.gene064519.t1;Parent=MS.gene064519.t1 |
chr5.3 | exon | 63269700 | 63269843 | 63269700 | ID=MS.gene064519.t1.exon12;Parent=MS.gene064519.t1 |
chr5.3 | CDS | 63269700 | 63269843 | 63269700 | ID=cds.MS.gene064519.t1;Parent=MS.gene064519.t1 |
Gene Sequence |
Protein sequence |