Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08908.t1 | XP_013446521.1 | 95.5 | 660 | 29 | 1 | 1 | 659 | 1 | 660 | 0.00E+00 | 1102 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08908.t1 | A0A072TUM3 | 95.5 | 660 | 29 | 1 | 1 | 659 | 1 | 660 | 0.0e+00 | 1102.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049149 | MS.gene08908 | 0.850825 | 1.32E-60 | -1.69E-46 |
| MS.gene049150 | MS.gene08908 | 0.859176 | 4.96E-63 | -1.69E-46 |
| MS.gene049151 | MS.gene08908 | 0.817348 | 3.45E-52 | -1.69E-46 |
| MS.gene049153 | MS.gene08908 | 0.872439 | 3.18E-67 | -1.69E-46 |
| MS.gene049356 | MS.gene08908 | 0.811848 | 5.70E-51 | -1.69E-46 |
| MS.gene049378 | MS.gene08908 | 0.820815 | 5.62E-53 | -1.69E-46 |
| MS.gene049758 | MS.gene08908 | 0.816022 | 6.85E-52 | -1.69E-46 |
| MS.gene049910 | MS.gene08908 | 0.826258 | 2.99E-54 | -1.69E-46 |
| MS.gene049993 | MS.gene08908 | 0.834807 | 2.42E-56 | -1.69E-46 |
| MS.gene050060 | MS.gene08908 | 0.842708 | 2.19E-58 | -1.69E-46 |
| MS.gene050128 | MS.gene08908 | 0.819299 | 1.25E-52 | -1.69E-46 |
| MS.gene050133 | MS.gene08908 | -0.82046 | 6.78E-53 | -1.69E-46 |
| MS.gene050168 | MS.gene08908 | 0.811293 | 7.53E-51 | -1.69E-46 |
| MS.gene050301 | MS.gene08908 | 0.818212 | 2.21E-52 | -1.69E-46 |
| MS.gene050400 | MS.gene08908 | 0.802323 | 5.92E-49 | -1.69E-46 |
| MS.gene050406 | MS.gene08908 | 0.804896 | 1.73E-49 | -1.69E-46 |
| MS.gene050426 | MS.gene08908 | -0.878038 | 3.88E-69 | -1.69E-46 |
| MS.gene050464 | MS.gene08908 | 0.849663 | 2.80E-60 | -1.69E-46 |
| MS.gene050529 | MS.gene08908 | 0.821593 | 3.72E-53 | -1.69E-46 |
| MS.gene050642 | MS.gene08908 | 0.833863 | 4.18E-56 | -1.69E-46 |
| MS.gene050670 | MS.gene08908 | 0.861636 | 8.93E-64 | -1.69E-46 |
| MS.gene050971 | MS.gene08908 | 0.818419 | 1.98E-52 | -1.69E-46 |
| MS.gene051373 | MS.gene08908 | 0.825668 | 4.13E-54 | -1.69E-46 |
| MS.gene051521 | MS.gene08908 | 0.839962 | 1.16E-57 | -1.69E-46 |
| MS.gene051525 | MS.gene08908 | 0.853683 | 2.03E-61 | -1.69E-46 |
| MS.gene051582 | MS.gene08908 | 0.834567 | 2.78E-56 | -1.69E-46 |
| MS.gene051588 | MS.gene08908 | 0.81131 | 7.46E-51 | -1.69E-46 |
| MS.gene051860 | MS.gene08908 | 0.862454 | 5.01E-64 | -1.69E-46 |
| MS.gene051983 | MS.gene08908 | 0.870782 | 1.12E-66 | -1.69E-46 |
| MS.gene052011 | MS.gene08908 | -0.864964 | 8.32E-65 | -1.69E-46 |
| MS.gene052077 | MS.gene08908 | 0.883911 | 3.00E-71 | -1.69E-46 |
| MS.gene052134 | MS.gene08908 | 0.828841 | 7.19E-55 | -1.69E-46 |
| MS.gene052135 | MS.gene08908 | 0.84687 | 1.66E-59 | -1.69E-46 |
| MS.gene052136 | MS.gene08908 | 0.803336 | 3.66E-49 | -1.69E-46 |
| MS.gene052159 | MS.gene08908 | 0.817465 | 3.25E-52 | -1.69E-46 |
| MS.gene052188 | MS.gene08908 | 0.86035 | 2.20E-63 | -1.69E-46 |
| MS.gene052253 | MS.gene08908 | 0.853239 | 2.73E-61 | -1.69E-46 |
| MS.gene052255 | MS.gene08908 | 0.812364 | 4.40E-51 | -1.69E-46 |
| MS.gene052340 | MS.gene08908 | 0.864868 | 8.92E-65 | -1.69E-46 |
| MS.gene052414 | MS.gene08908 | 0.824531 | 7.67E-54 | -1.69E-46 |
| MS.gene052469 | MS.gene08908 | 0.808938 | 2.42E-50 | -1.69E-46 |
| MS.gene052758 | MS.gene08908 | 0.825979 | 3.49E-54 | -1.69E-46 |
| MS.gene052762 | MS.gene08908 | 0.811423 | 7.05E-51 | -1.69E-46 |
| MS.gene053169 | MS.gene08908 | 0.804922 | 1.71E-49 | -1.69E-46 |
| MS.gene05316 | MS.gene08908 | 0.864635 | 1.05E-64 | -1.69E-46 |
| MS.gene053176 | MS.gene08908 | 0.824139 | 9.49E-54 | -1.69E-46 |
| MS.gene053330 | MS.gene08908 | 0.815209 | 1.04E-51 | -1.69E-46 |
| MS.gene053494 | MS.gene08908 | 0.875989 | 1.99E-68 | -1.69E-46 |
| MS.gene053557 | MS.gene08908 | 0.826129 | 3.21E-54 | -1.69E-46 |
| MS.gene053836 | MS.gene08908 | 0.83824 | 3.23E-57 | -1.69E-46 |
| MS.gene053928 | MS.gene08908 | 0.835056 | 2.09E-56 | -1.69E-46 |
| MS.gene054102 | MS.gene08908 | 0.82621 | 3.07E-54 | -1.69E-46 |
| MS.gene054108 | MS.gene08908 | 0.815535 | 8.79E-52 | -1.69E-46 |
| MS.gene054123 | MS.gene08908 | 0.810239 | 1.27E-50 | -1.69E-46 |
| MS.gene054183 | MS.gene08908 | 0.890087 | 1.35E-73 | -1.69E-46 |
| MS.gene054349 | MS.gene08908 | 0.863664 | 2.12E-64 | -1.69E-46 |
| MS.gene054548 | MS.gene08908 | 0.812365 | 4.40E-51 | -1.69E-46 |
| MS.gene054556 | MS.gene08908 | 0.846352 | 2.29E-59 | -1.69E-46 |
| MS.gene054719 | MS.gene08908 | 0.820661 | 6.10E-53 | -1.69E-46 |
| MS.gene054918 | MS.gene08908 | 0.826604 | 2.48E-54 | -1.69E-46 |
| MS.gene054930 | MS.gene08908 | 0.844415 | 7.67E-59 | -1.69E-46 |
| MS.gene054983 | MS.gene08908 | 0.814324 | 1.63E-51 | -1.69E-46 |
| MS.gene055116 | MS.gene08908 | 0.841941 | 3.50E-58 | -1.69E-46 |
| MS.gene055211 | MS.gene08908 | 0.821337 | 4.26E-53 | -1.69E-46 |
| MS.gene055369 | MS.gene08908 | 0.855095 | 7.94E-62 | -1.69E-46 |
| MS.gene055539 | MS.gene08908 | 0.818754 | 1.66E-52 | -1.69E-46 |
| MS.gene05553 | MS.gene08908 | 0.895526 | 8.81E-76 | -1.69E-46 |
| MS.gene05556 | MS.gene08908 | 0.848039 | 7.90E-60 | -1.69E-46 |
| MS.gene055601 | MS.gene08908 | -0.80015 | 1.65E-48 | -1.69E-46 |
| MS.gene055604 | MS.gene08908 | 0.816835 | 4.51E-52 | -1.69E-46 |
| MS.gene055666 | MS.gene08908 | 0.800885 | 1.17E-48 | -1.69E-46 |
| MS.gene055701 | MS.gene08908 | 0.849535 | 3.04E-60 | -1.69E-46 |
| MS.gene05594 | MS.gene08908 | 0.800778 | 1.23E-48 | -1.69E-46 |
| MS.gene056233 | MS.gene08908 | 0.840638 | 7.71E-58 | -1.69E-46 |
| MS.gene056407 | MS.gene08908 | 0.826316 | 2.90E-54 | -1.69E-46 |
| MS.gene056447 | MS.gene08908 | 0.831264 | 1.84E-55 | -1.69E-46 |
| MS.gene056514 | MS.gene08908 | 0.828436 | 9.00E-55 | -1.69E-46 |
| MS.gene056612 | MS.gene08908 | 0.800773 | 1.23E-48 | -1.69E-46 |
| MS.gene056659 | MS.gene08908 | 0.844317 | 8.15E-59 | -1.69E-46 |
| MS.gene056723 | MS.gene08908 | 0.875742 | 2.42E-68 | -1.69E-46 |
| MS.gene056899 | MS.gene08908 | -0.850619 | 1.51E-60 | -1.69E-46 |
| MS.gene056979 | MS.gene08908 | 0.861862 | 7.61E-64 | -1.69E-46 |
| MS.gene05702 | MS.gene08908 | 0.815342 | 9.71E-52 | -1.69E-46 |
| MS.gene057124 | MS.gene08908 | 0.827304 | 1.68E-54 | -1.69E-46 |
| MS.gene057396 | MS.gene08908 | 0.902341 | 1.07E-78 | -1.69E-46 |
| MS.gene057448 | MS.gene08908 | 0.844162 | 8.97E-59 | -1.69E-46 |
| MS.gene057449 | MS.gene08908 | 0.834551 | 2.81E-56 | -1.69E-46 |
| MS.gene057450 | MS.gene08908 | 0.838676 | 2.50E-57 | -1.69E-46 |
| MS.gene057469 | MS.gene08908 | 0.804519 | 2.08E-49 | -1.69E-46 |
| MS.gene057476 | MS.gene08908 | 0.814186 | 1.75E-51 | -1.69E-46 |
| MS.gene057749 | MS.gene08908 | 0.823702 | 1.20E-53 | -1.69E-46 |
| MS.gene057823 | MS.gene08908 | 0.819454 | 1.15E-52 | -1.69E-46 |
| MS.gene057825 | MS.gene08908 | 0.829648 | 4.58E-55 | -1.69E-46 |
| MS.gene057996 | MS.gene08908 | 0.807845 | 4.14E-50 | -1.69E-46 |
| MS.gene058002 | MS.gene08908 | 0.82647 | 2.67E-54 | -1.69E-46 |
| MS.gene058007 | MS.gene08908 | 0.827233 | 1.75E-54 | -1.69E-46 |
| MS.gene05811 | MS.gene08908 | 0.809461 | 1.87E-50 | -1.69E-46 |
| MS.gene058142 | MS.gene08908 | 0.869961 | 2.09E-66 | -1.69E-46 |
| MS.gene058276 | MS.gene08908 | 0.810424 | 1.16E-50 | -1.69E-46 |
| MS.gene058435 | MS.gene08908 | 0.833704 | 4.58E-56 | -1.69E-46 |
| MS.gene05856 | MS.gene08908 | 0.807989 | 3.86E-50 | -1.69E-46 |
| MS.gene058700 | MS.gene08908 | 0.838632 | 2.56E-57 | -1.69E-46 |
| MS.gene058710 | MS.gene08908 | 0.826903 | 2.10E-54 | -1.69E-46 |
| MS.gene05886 | MS.gene08908 | 0.830884 | 2.28E-55 | -1.69E-46 |
| MS.gene058928 | MS.gene08908 | 0.82331 | 1.48E-53 | -1.69E-46 |
| MS.gene058949 | MS.gene08908 | 0.84703 | 1.50E-59 | -1.69E-46 |
| MS.gene059011 | MS.gene08908 | 0.853183 | 2.83E-61 | -1.69E-46 |
| MS.gene05907 | MS.gene08908 | 0.840854 | 6.77E-58 | -1.69E-46 |
| MS.gene059082 | MS.gene08908 | 0.840117 | 1.05E-57 | -1.69E-46 |
| MS.gene059247 | MS.gene08908 | 0.846687 | 1.86E-59 | -1.69E-46 |
| MS.gene059285 | MS.gene08908 | 0.860526 | 1.94E-63 | -1.69E-46 |
| MS.gene059294 | MS.gene08908 | 0.807059 | 6.08E-50 | -1.69E-46 |
| MS.gene059366 | MS.gene08908 | 0.805706 | 1.17E-49 | -1.69E-46 |
| MS.gene059420 | MS.gene08908 | 0.889467 | 2.36E-73 | -1.69E-46 |
| MS.gene059462 | MS.gene08908 | 0.851229 | 1.02E-60 | -1.69E-46 |
| MS.gene059609 | MS.gene08908 | 0.855444 | 6.28E-62 | -1.69E-46 |
| MS.gene059688 | MS.gene08908 | 0.812377 | 4.37E-51 | -1.69E-46 |
| MS.gene059692 | MS.gene08908 | 0.801736 | 7.82E-49 | -1.69E-46 |
| MS.gene059695 | MS.gene08908 | 0.800063 | 1.72E-48 | -1.69E-46 |
| MS.gene059788 | MS.gene08908 | 0.818662 | 1.74E-52 | -1.69E-46 |
| MS.gene059807 | MS.gene08908 | 0.844884 | 5.73E-59 | -1.69E-46 |
| MS.gene05984 | MS.gene08908 | 0.842743 | 2.15E-58 | -1.69E-46 |
| MS.gene059868 | MS.gene08908 | 0.8297 | 4.45E-55 | -1.69E-46 |
| MS.gene059876 | MS.gene08908 | 0.818406 | 1.99E-52 | -1.69E-46 |
| MS.gene059894 | MS.gene08908 | 0.813976 | 1.95E-51 | -1.69E-46 |
| MS.gene059899 | MS.gene08908 | 0.805175 | 1.52E-49 | -1.69E-46 |
| MS.gene059933 | MS.gene08908 | 0.813504 | 2.47E-51 | -1.69E-46 |
| MS.gene059958 | MS.gene08908 | 0.843681 | 1.21E-58 | -1.69E-46 |
| MS.gene060247 | MS.gene08908 | 0.845539 | 3.81E-59 | -1.69E-46 |
| MS.gene060403 | MS.gene08908 | 0.820277 | 7.47E-53 | -1.69E-46 |
| MS.gene060407 | MS.gene08908 | 0.802803 | 4.72E-49 | -1.69E-46 |
| MS.gene060495 | MS.gene08908 | 0.844527 | 7.15E-59 | -1.69E-46 |
| MS.gene061002 | MS.gene08908 | 0.827981 | 1.16E-54 | -1.69E-46 |
| MS.gene061049 | MS.gene08908 | 0.853038 | 3.11E-61 | -1.69E-46 |
| MS.gene061051 | MS.gene08908 | -0.814765 | 1.30E-51 | -1.69E-46 |
| MS.gene061114 | MS.gene08908 | -0.847716 | 9.70E-60 | -1.69E-46 |
| MS.gene061154 | MS.gene08908 | 0.856034 | 4.23E-62 | -1.69E-46 |
| MS.gene061159 | MS.gene08908 | 0.884585 | 1.69E-71 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08908.t1 | MTR_8g080080 | 94.848 | 660 | 33 | 1 | 1 | 659 | 1 | 660 | 0.0 | 1303 |
| MS.gene08908.t1 | MTR_3g085830 | 58.285 | 688 | 234 | 19 | 1 | 658 | 1 | 665 | 0.0 | 733 |
| MS.gene08908.t1 | MTR_6g022830 | 48.571 | 665 | 303 | 17 | 1 | 635 | 1 | 656 | 0.0 | 543 |
| MS.gene08908.t1 | MTR_6g023070 | 45.118 | 594 | 285 | 16 | 67 | 635 | 16 | 593 | 5.11e-141 | 425 |
| MS.gene08908.t1 | MTR_7g117620 | 31.500 | 200 | 107 | 6 | 211 | 382 | 98 | 295 | 1.10e-16 | 84.0 |
| MS.gene08908.t1 | MTR_7g100430 | 29.293 | 198 | 122 | 5 | 189 | 386 | 162 | 341 | 3.81e-13 | 72.8 |
| MS.gene08908.t1 | MTR_7g100430 | 27.652 | 264 | 158 | 11 | 133 | 385 | 65 | 306 | 8.49e-11 | 65.5 |
| MS.gene08908.t1 | MTR_2g101310 | 27.717 | 184 | 109 | 4 | 220 | 382 | 139 | 319 | 7.09e-13 | 72.0 |
| MS.gene08908.t1 | MTR_4g062100 | 30.256 | 195 | 120 | 3 | 102 | 296 | 70 | 248 | 7.66e-13 | 72.0 |
| MS.gene08908.t1 | MTR_4g062100 | 24.528 | 212 | 142 | 3 | 188 | 399 | 108 | 301 | 1.34e-11 | 67.8 |
| MS.gene08908.t1 | MTR_1g115575 | 29.091 | 220 | 128 | 5 | 102 | 320 | 131 | 323 | 9.66e-13 | 71.6 |
| MS.gene08908.t1 | MTR_2g101310 | 27.717 | 184 | 109 | 4 | 220 | 382 | 139 | 319 | 1.01e-12 | 71.2 |
| MS.gene08908.t1 | MTR_7g100390 | 28.796 | 191 | 118 | 4 | 106 | 295 | 53 | 226 | 1.55e-12 | 70.9 |
| MS.gene08908.t1 | MTR_2g096190 | 24.823 | 282 | 175 | 9 | 106 | 382 | 31 | 280 | 2.03e-12 | 70.5 |
| MS.gene08908.t1 | MTR_2g096190 | 27.957 | 186 | 116 | 4 | 221 | 405 | 101 | 269 | 2.82e-12 | 70.1 |
| MS.gene08908.t1 | MTR_1g032100 | 26.776 | 183 | 116 | 4 | 212 | 393 | 82 | 247 | 6.36e-11 | 65.9 |
| MS.gene08908.t1 | MTR_5g026800 | 31.707 | 164 | 92 | 6 | 189 | 352 | 15 | 158 | 6.79e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08908.t1 | AT3G01750 | 49.310 | 580 | 265 | 9 | 1 | 559 | 1 | 572 | 0.0 | 535 |
| MS.gene08908.t1 | AT3G01750 | 49.310 | 580 | 265 | 9 | 1 | 559 | 1 | 572 | 0.0 | 535 |
| MS.gene08908.t1 | AT3G04140 | 43.750 | 672 | 323 | 17 | 1 | 650 | 1 | 639 | 1.56e-160 | 476 |
| MS.gene08908.t1 | AT1G07710 | 30.698 | 215 | 128 | 7 | 98 | 311 | 99 | 293 | 4.56e-14 | 75.9 |
| MS.gene08908.t1 | AT1G07710 | 25.887 | 282 | 174 | 9 | 105 | 382 | 30 | 280 | 7.91e-13 | 72.0 |
| MS.gene08908.t1 | AT1G07710 | 25.688 | 218 | 145 | 4 | 188 | 405 | 69 | 269 | 9.79e-12 | 68.6 |
| MS.gene08908.t1 | AT1G07710 | 30.698 | 215 | 128 | 7 | 98 | 311 | 99 | 293 | 4.56e-14 | 75.9 |
| MS.gene08908.t1 | AT1G07710 | 25.887 | 282 | 174 | 9 | 105 | 382 | 30 | 280 | 7.91e-13 | 72.0 |
| MS.gene08908.t1 | AT1G07710 | 25.688 | 218 | 145 | 4 | 188 | 405 | 69 | 269 | 9.79e-12 | 68.6 |
| MS.gene08908.t1 | AT5G02620 | 27.551 | 196 | 122 | 5 | 188 | 382 | 94 | 270 | 2.38e-12 | 70.5 |
| MS.gene08908.t1 | AT5G02620 | 27.551 | 196 | 122 | 5 | 188 | 382 | 94 | 270 | 2.38e-12 | 70.5 |
| MS.gene08908.t1 | AT5G02620 | 27.551 | 196 | 122 | 5 | 188 | 382 | 94 | 270 | 2.38e-12 | 70.5 |
| MS.gene08908.t1 | AT2G31820 | 28.962 | 183 | 106 | 6 | 221 | 382 | 224 | 403 | 6.53e-12 | 69.3 |
| MS.gene08908.t1 | AT5G02620 | 30.625 | 160 | 92 | 4 | 188 | 346 | 94 | 235 | 2.44e-11 | 67.0 |
| MS.gene08908.t1 | AT5G02620 | 30.625 | 160 | 92 | 4 | 188 | 346 | 94 | 235 | 2.44e-11 | 67.0 |
| MS.gene08908.t1 | AT3G09550 | 26.606 | 218 | 134 | 5 | 102 | 319 | 150 | 341 | 6.55e-11 | 65.9 |
| MS.gene08908.t1 | AT3G09550 | 26.606 | 218 | 134 | 5 | 102 | 319 | 143 | 334 | 6.72e-11 | 65.9 |
| MS.gene08908.t1 | AT3G09550 | 26.606 | 218 | 134 | 5 | 102 | 319 | 143 | 334 | 6.72e-11 | 65.9 |
Find 100 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAAGACTAGTGGTGTTAAT+TGG | 0.207448 | 4.4:+16870273 | MS.gene08908:CDS |
| AAGAATTTCCAATCTCATTA+AGG | 0.276743 | 4.4:+16870417 | MS.gene08908:CDS |
| TGCTGCTTCTGCTGGTGATT+TGG | 0.292656 | 4.4:+16868540 | MS.gene08908:CDS |
| ATCATCGTCTTCAAATTCTA+AGG | 0.293118 | 4.4:-16870354 | None:intergenic |
| TCTCTCATTCGTGGTGGATA+TGG | 0.311166 | 4.4:+16868499 | MS.gene08908:CDS |
| TATCTTTGCCTTAATGAGAT+TGG | 0.319231 | 4.4:-16870425 | None:intergenic |
| CCTAATGCAAGGTGTAATTA+AGG | 0.327932 | 4.4:+16870541 | MS.gene08908:CDS |
| TGATATTCTAAATGAAGTTC+CGG | 0.337345 | 4.4:-16870132 | None:intergenic |
| ACAAAAGAACACTATCTATA+AGG | 0.350958 | 4.4:+16870474 | MS.gene08908:CDS |
| TTGAAAACTCGTCATGGTAT+TGG | 0.358691 | 4.4:+16870101 | MS.gene08908:CDS |
| TCAGTAGAGTTTATAATATC+AGG | 0.361249 | 4.4:-16869582 | None:intergenic |
| CCTTAATTACACCTTGCATT+AGG | 0.369020 | 4.4:-16870541 | None:intergenic |
| AGATTGTGGTATTGTTGAAT+TGG | 0.372361 | 4.4:+16868708 | MS.gene08908:CDS |
| CAAGAGGGAGATAGTGAATA+GGG | 0.378021 | 4.4:+16868756 | MS.gene08908:CDS |
| TTGTATACTGCTGCTTCTGC+TGG | 0.379152 | 4.4:+16868532 | MS.gene08908:CDS |
| TTTCTTCATATGGCAATGTA+TGG | 0.383930 | 4.4:+16869723 | MS.gene08908:CDS |
| TTAATAATTCTGTAAGTTCA+AGG | 0.385745 | 4.4:+16870381 | MS.gene08908:CDS |
| CTGCTGCTAGAGGAGGGAAT+TGG | 0.395808 | 4.4:+16868788 | MS.gene08908:CDS |
| TGCTGCTAGAGGAGGGAATT+GGG | 0.409718 | 4.4:+16868789 | MS.gene08908:CDS |
| GTTGAGAAGGGATTCTTTGT+TGG | 0.411093 | 4.4:+16868579 | MS.gene08908:CDS |
| AATTCAGAAGATCTTGATCT+TGG | 0.413086 | 4.4:-16869999 | None:intergenic |
| TTCTTACTTTCCTCTACGTT+GGG | 0.414168 | 4.4:+16868225 | MS.gene08908:CDS |
| TACCCAGCAGTTGAACTATA+AGG | 0.415427 | 4.4:+16870676 | MS.gene08908:CDS |
| TGGAGCACAAGGGCAGGCTT+TGG | 0.420864 | 4.4:+16870742 | MS.gene08908:CDS |
| CAAGACTAGTGGTGTTAATT+GGG | 0.421578 | 4.4:+16870274 | MS.gene08908:CDS |
| TTTGCAGCTGCTAAATCAAT+AGG | 0.426019 | 4.4:-16868280 | None:intergenic |
| ATGTATGGTTTCACAAATCC+TGG | 0.427463 | 4.4:+16869738 | MS.gene08908:CDS |
| ATCAATGTCAAGAACAATGT+TGG | 0.432252 | 4.4:+16869840 | MS.gene08908:CDS |
| TCAAGAGGGAGATAGTGAAT+AGG | 0.438387 | 4.4:+16868755 | MS.gene08908:CDS |
| AAAAGTGTCTCCATTGTGAT+TGG | 0.439400 | 4.4:-16869703 | None:intergenic |
| GCTCCTTATAGTTCAACTGC+TGG | 0.450607 | 4.4:-16870679 | None:intergenic |
| GATATTCTAAATGAAGTTCC+GGG | 0.452704 | 4.4:-16870131 | None:intergenic |
| TGCTCTAACGGACCAATAGA+TGG | 0.459067 | 4.4:+16870647 | MS.gene08908:CDS |
| CGAAAAGGTTGCGAACATAA+AGG | 0.466998 | 4.4:+16869812 | MS.gene08908:CDS |
| TGAGAAGATTTGTATCATGA+TGG | 0.469922 | 4.4:-16868333 | None:intergenic |
| TGAGTTATTACTAACCGAAA+AGG | 0.479208 | 4.4:+16869797 | MS.gene08908:CDS |
| CTTAACATTCGCGACGCAGA+TGG | 0.490419 | 4.4:+16869945 | MS.gene08908:CDS |
| TTGCATTCAGCAGCTGGAAG+AGG | 0.493545 | 4.4:+16868889 | MS.gene08908:CDS |
| ATTGATTTAGCAGCTGCAAA+TGG | 0.494631 | 4.4:+16868283 | MS.gene08908:CDS |
| TTATCTTATAGAGATGTTCA+AGG | 0.496796 | 4.4:+16868856 | MS.gene08908:CDS |
| TCAATGTCAAGAACAATGTT+GGG | 0.501046 | 4.4:+16869841 | MS.gene08908:CDS |
| TTCTTCTACGCCACTTGAGA+AGG | 0.501910 | 4.4:-16870316 | None:intergenic |
| TTGGATGAAGGTGTTGGTGG+TGG | 0.504868 | 4.4:+16868727 | MS.gene08908:CDS |
| CTTCTTACTTTCCTCTACGT+TGG | 0.504888 | 4.4:+16868224 | MS.gene08908:CDS |
| TGTTTATGAATTGTTGAGAA+GGG | 0.505920 | 4.4:+16868567 | MS.gene08908:CDS |
| GGACTGCCCTCTTGCTCTAA+CGG | 0.508812 | 4.4:+16870635 | MS.gene08908:CDS |
| GGTATTGTTGAATTGGATGA+AGG | 0.511469 | 4.4:+16868715 | MS.gene08908:CDS |
| AGCTGGAAGAGGCCAGGTTG+AGG | 0.513559 | 4.4:+16868900 | MS.gene08908:CDS |
| GAGTGTGAAGAAACAGCAAC+AGG | 0.514596 | 4.4:+16868469 | MS.gene08908:CDS |
| GCTCTCTTGGGAAAAGATTG+TGG | 0.515816 | 4.4:+16868694 | MS.gene08908:CDS |
| CACAAACATGTTGATACACT+GGG | 0.530524 | 4.4:+16870614 | MS.gene08908:CDS |
| CTCATTCGTGGTGGATATGG+TGG | 0.531172 | 4.4:+16868502 | MS.gene08908:CDS |
| TTCAGCAGCTGGAAGAGGCC+AGG | 0.531435 | 4.4:+16868894 | MS.gene08908:CDS |
| AAAACTCGTCATGGTATTGG+AGG | 0.532617 | 4.4:+16870104 | MS.gene08908:CDS |
| CATGGTATTGGAGGTAGTCC+CGG | 0.533373 | 4.4:+16870113 | MS.gene08908:CDS |
| CTCCTTATAGTTCAACTGCT+GGG | 0.535241 | 4.4:-16870678 | None:intergenic |
| GTTGAATTGGATGAAGGTGT+TGG | 0.536043 | 4.4:+16868721 | MS.gene08908:CDS |
| GCACAAACATGTTGATACAC+TGG | 0.536271 | 4.4:+16870613 | MS.gene08908:CDS |
| GTGTTAATTGGGCCGCGAGA+CGG | 0.548204 | 4.4:+16870285 | MS.gene08908:CDS |
| GAATTGGATGAAGGTGTTGG+TGG | 0.556011 | 4.4:+16868724 | MS.gene08908:CDS |
| CCTCTACGTTGGGAGAGCAC+AGG | 0.559069 | 4.4:+16868235 | MS.gene08908:CDS |
| TAGGTGTTGCATACCACCAT+TGG | 0.559115 | 4.4:-16868261 | None:intergenic |
| TTGTTTATGAATTGTTGAGA+AGG | 0.562613 | 4.4:+16868566 | MS.gene08908:CDS |
| GCTATTCATGCTGCTGCTAG+AGG | 0.565183 | 4.4:+16868778 | MS.gene08908:CDS |
| TGCAATGAAAATGATCAAGC+AGG | 0.567272 | 4.4:+16870179 | MS.gene08908:CDS |
| GGAACAAACTCTCTCATTCG+TGG | 0.569551 | 4.4:+16868490 | MS.gene08908:CDS |
| TTGTCTAGTCTGCAGAAACC+AGG | 0.572724 | 4.4:-16869756 | None:intergenic |
| TAACGGACCAATAGATGGTG+GGG | 0.576593 | 4.4:+16870652 | MS.gene08908:CDS |
| CAACGTAGAGGAAAGTAAGA+AGG | 0.582105 | 4.4:-16868223 | None:intergenic |
| TATTGGTCCGTTAGAGCAAG+AGG | 0.583336 | 4.4:-16870642 | None:intergenic |
| TGTGAGTCCTTACCTCAACC+TGG | 0.583391 | 4.4:-16868912 | None:intergenic |
| ATTCATGCTGCTGCTAGAGG+AGG | 0.586565 | 4.4:+16868781 | MS.gene08908:CDS |
| CTAACGGACCAATAGATGGT+GGG | 0.592448 | 4.4:+16870651 | MS.gene08908:CDS |
| TTACAGAGGTTACCTTCATG+TGG | 0.604215 | 4.4:+16869638 | MS.gene08908:CDS |
| TTACATGTGGCTTCTTACAG+AGG | 0.606656 | 4.4:+16869624 | MS.gene08908:CDS |
| TTCACTGCAGGCCTAATGCA+AGG | 0.610079 | 4.4:+16870530 | MS.gene08908:CDS |
| TTCATGCTGCTGCTAGAGGA+GGG | 0.615437 | 4.4:+16868782 | MS.gene08908:CDS |
| ACTCATTTGAAAACTCGTCA+TGG | 0.623099 | 4.4:+16870095 | MS.gene08908:CDS |
| ATATGCTTTATGCTGCAGCT+AGG | 0.623467 | 4.4:+16868632 | MS.gene08908:CDS |
| TTCGTGGTGGATATGGTGGA+TGG | 0.624766 | 4.4:+16868506 | MS.gene08908:CDS |
| TTAGAATCTCTACCACATGA+AGG | 0.626407 | 4.4:-16869650 | None:intergenic |
| GGGAGAGCACAGGAGACCAA+TGG | 0.629721 | 4.4:+16868245 | MS.gene08908:CDS |
| TCTAACGGACCAATAGATGG+TGG | 0.643080 | 4.4:+16870650 | MS.gene08908:CDS |
| AGCTAGGAGTAAGAATTCTG+AGG | 0.643118 | 4.4:+16868648 | MS.gene08908:CDS |
| AGGTAATGCCGCATTACATG+TGG | 0.644420 | 4.4:+16869611 | MS.gene08908:CDS |
| AACGGACCAATAGATGGTGG+GGG | 0.644986 | 4.4:+16870653 | MS.gene08908:CDS |
| ACTAGTCTTGCTGTTACATG+AGG | 0.645032 | 4.4:-16870261 | None:intergenic |
| TCATGTAACAGCAAGACTAG+TGG | 0.650511 | 4.4:+16870263 | MS.gene08908:CDS |
| GGTTAATGAACCTTCTCAAG+TGG | 0.653219 | 4.4:+16870306 | MS.gene08908:CDS |
| TCGTCGACTAGAAACTGTGT+GGG | 0.654713 | 4.4:+16868381 | MS.gene08908:CDS |
| GTAAGAAGCCACATGTAATG+CGG | 0.659012 | 4.4:-16869619 | None:intergenic |
| CCTGTGCTCTCCCAACGTAG+AGG | 0.659563 | 4.4:-16868235 | None:intergenic |
| ACAAAGTTAACCAATCACAA+TGG | 0.661701 | 4.4:+16869693 | MS.gene08908:CDS |
| AGAGCACAGGAGACCAATGG+TGG | 0.668331 | 4.4:+16868248 | MS.gene08908:CDS |
| ACAAACTCTCTCATTCGTGG+TGG | 0.676010 | 4.4:+16868493 | MS.gene08908:CDS |
| TTCGTCGACTAGAAACTGTG+TGG | 0.676029 | 4.4:+16868380 | MS.gene08908:CDS |
| ATAAACTCTACTGATGCACA+AGG | 0.678669 | 4.4:+16869591 | MS.gene08908:CDS |
| TTGATGATGTTGCAAAGTGT+AGG | 0.682820 | 4.4:+16868419 | MS.gene08908:CDS |
| ATTGGTCCGTTAGAGCAAGA+GGG | 0.692608 | 4.4:-16870641 | None:intergenic |
| AAGGTTCATTAACCGTCTCG+CGG | 0.699125 | 4.4:-16870297 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAAATAATTAATGATGC+AGG | + | chr4.4:16869533-16869552 | MS.gene08908:intron | 15.0% |
| !!! | TATAATTTTGTTATTTTCAG+TGG | + | chr4.4:16869355-16869374 | MS.gene08908:intron | 15.0% |
| !! | CAGTTAATACTAAATAATCT+AGG | + | chr4.4:16869451-16869470 | MS.gene08908:intron | 20.0% |
| !! | CTAAATAATCTAGGAATAAA+AGG | + | chr4.4:16869460-16869479 | MS.gene08908:intron | 20.0% |
| !! | TATAAAATTGTCCCTAAAAA+TGG | - | chr4.4:16869339-16869358 | None:intergenic | 20.0% |
| !! | TTAATAATTCTGTAAGTTCA+AGG | + | chr4.4:16870381-16870400 | MS.gene08908:CDS | 20.0% |
| !!! | ATGAACAAGTATTTTTCTTT+TGG | + | chr4.4:16870722-16870741 | MS.gene08908:CDS | 20.0% |
| !!! | ATTTTAGAGACAAAATCATA+TGG | - | chr4.4:16869216-16869235 | None:intergenic | 20.0% |
| !!! | CTTTTTTTCAAATAATCAAG+AGG | - | chr4.4:16869978-16869997 | None:intergenic | 20.0% |
| ! | AAGAATTTCCAATCTCATTA+AGG | + | chr4.4:16870417-16870436 | MS.gene08908:CDS | 25.0% |
| ! | AAGTTCAAGGAAAAATGATT+TGG | + | chr4.4:16870394-16870413 | MS.gene08908:CDS | 25.0% |
| ! | AATAATCTAGGAATAAAAGG+AGG | + | chr4.4:16869463-16869482 | MS.gene08908:intron | 25.0% |
| ! | ACAAAAGAACACTATCTATA+AGG | + | chr4.4:16870474-16870493 | MS.gene08908:CDS | 25.0% |
| ! | ACAAAATCATATGGTTTCTA+GGG | - | chr4.4:16869207-16869226 | None:intergenic | 25.0% |
| ! | ATCAACTTTATAATGTGATG+GGG | + | chr4.4:16869308-16869327 | MS.gene08908:intron | 25.0% |
| ! | GATCAACTTTATAATGTGAT+GGG | + | chr4.4:16869307-16869326 | MS.gene08908:intron | 25.0% |
| ! | TAAATAATTAATGATGCAGG+TGG | + | chr4.4:16869536-16869555 | MS.gene08908:intron | 25.0% |
| ! | TCAGTAGAGTTTATAATATC+AGG | - | chr4.4:16869585-16869604 | None:intergenic | 25.0% |
| ! | TGATATTCTAAATGAAGTTC+CGG | - | chr4.4:16870135-16870154 | None:intergenic | 25.0% |
| ! | TGATCAACTTTATAATGTGA+TGG | + | chr4.4:16869306-16869325 | MS.gene08908:intron | 25.0% |
| ! | TGTTTATGAATTGTTGAGAA+GGG | + | chr4.4:16868567-16868586 | MS.gene08908:CDS | 25.0% |
| ! | TTATCTTATAGAGATGTTCA+AGG | + | chr4.4:16868856-16868875 | MS.gene08908:CDS | 25.0% |
| ! | TTGTTTATGAATTGTTGAGA+AGG | + | chr4.4:16868566-16868585 | MS.gene08908:CDS | 25.0% |
| !!! | GTGAAATATTTTTTTGCAGA+TGG | - | chr4.4:16870515-16870534 | None:intergenic | 25.0% |
| AAGGTAAAGACACAAAAAGA+AGG | + | chr4.4:16870560-16870579 | MS.gene08908:CDS | 30.0% | |
| AATTCAGAAGATCTTGATCT+TGG | - | chr4.4:16870002-16870021 | None:intergenic | 30.0% | |
| ACAAAGTTAACCAATCACAA+TGG | + | chr4.4:16869693-16869712 | MS.gene08908:CDS | 30.0% | |
| AGATTGTGGTATTGTTGAAT+TGG | + | chr4.4:16868708-16868727 | MS.gene08908:CDS | 30.0% | |
| AGGTAAAGACACAAAAAGAA+GGG | + | chr4.4:16870561-16870580 | MS.gene08908:CDS | 30.0% | |
| ATCAATGTCAAGAACAATGT+TGG | + | chr4.4:16869840-16869859 | MS.gene08908:CDS | 30.0% | |
| ATCATCGTCTTCAAATTCTA+AGG | - | chr4.4:16870357-16870376 | None:intergenic | 30.0% | |
| GACAAAATCATATGGTTTCT+AGG | - | chr4.4:16869208-16869227 | None:intergenic | 30.0% | |
| GATATTCTAAATGAAGTTCC+GGG | - | chr4.4:16870134-16870153 | None:intergenic | 30.0% | |
| GCAAAAAAATATTTCACTGC+AGG | + | chr4.4:16870518-16870537 | MS.gene08908:CDS | 30.0% | |
| TATCTTTGCCTTAATGAGAT+TGG | - | chr4.4:16870428-16870447 | None:intergenic | 30.0% | |
| TCAATGTCAAGAACAATGTT+GGG | + | chr4.4:16869841-16869860 | MS.gene08908:CDS | 30.0% | |
| TGAGAAGATTTGTATCATGA+TGG | - | chr4.4:16868336-16868355 | None:intergenic | 30.0% | |
| TGAGTTATTACTAACCGAAA+AGG | + | chr4.4:16869797-16869816 | MS.gene08908:CDS | 30.0% | |
| TTTCTTCATATGGCAATGTA+TGG | + | chr4.4:16869723-16869742 | MS.gene08908:CDS | 30.0% | |
| ! | ATTCTTGATTTTGCTCTCTT+GGG | + | chr4.4:16868682-16868701 | MS.gene08908:CDS | 30.0% |
| ! | GATCGAAGATTTTCAATTTC+AGG | - | chr4.4:16869262-16869281 | None:intergenic | 30.0% |
| !! | ATTTTAGTCCCTCACTATTT+CGG | - | chr4.4:16869394-16869413 | None:intergenic | 30.0% |
| !! | TGTCTCTAAAATTGTAGAAC+CGG | + | chr4.4:16869224-16869243 | MS.gene08908:intron | 30.0% |
| !!! | ATTTTTCTTTTGGAGCACAA+GGG | + | chr4.4:16870732-16870751 | MS.gene08908:CDS | 30.0% |
| !!! | GATAGTGTTCTTTTGTTGTT+TGG | - | chr4.4:16870470-16870489 | None:intergenic | 30.0% |
| !!! | TATTTTTCTTTTGGAGCACA+AGG | + | chr4.4:16870731-16870750 | MS.gene08908:CDS | 30.0% |
| !!! | TATTTTTTTGCAGATGGAGT+TGG | - | chr4.4:16870509-16870528 | None:intergenic | 30.0% |
| ACTATTTCGGTAGAGCAATT+CGG | - | chr4.4:16869381-16869400 | None:intergenic | 35.0% | |
| ACTCATTTGAAAACTCGTCA+TGG | + | chr4.4:16870095-16870114 | MS.gene08908:CDS | 35.0% | |
| ATAAACTCTACTGATGCACA+AGG | + | chr4.4:16869591-16869610 | MS.gene08908:CDS | 35.0% | |
| ATGTATGGTTTCACAAATCC+TGG | + | chr4.4:16869738-16869757 | MS.gene08908:CDS | 35.0% | |
| CACAAACATGTTGATACACT+GGG | + | chr4.4:16870614-16870633 | MS.gene08908:CDS | 35.0% | |
| CCTAATGCAAGGTGTAATTA+AGG | + | chr4.4:16870541-16870560 | MS.gene08908:CDS | 35.0% | |
| CCTTAATTACACCTTGCATT+AGG | - | chr4.4:16870544-16870563 | None:intergenic | 35.0% | |
| CTATGTCACATTCTAAACAC+TGG | + | chr4.4:16869132-16869151 | MS.gene08908:intron | 35.0% | |
| GGTATTGTTGAATTGGATGA+AGG | + | chr4.4:16868715-16868734 | MS.gene08908:CDS | 35.0% | |
| TGCAATGAAAATGATCAAGC+AGG | + | chr4.4:16870179-16870198 | MS.gene08908:CDS | 35.0% | |
| TTAGAATCTCTACCACATGA+AGG | - | chr4.4:16869653-16869672 | None:intergenic | 35.0% | |
| TTCTTACTTTCCTCTACGTT+GGG | + | chr4.4:16868225-16868244 | MS.gene08908:CDS | 35.0% | |
| TTGAAAACTCGTCATGGTAT+TGG | + | chr4.4:16870101-16870120 | MS.gene08908:CDS | 35.0% | |
| TTTCAGGATCAAATTGTGTC+CGG | - | chr4.4:16869246-16869265 | None:intergenic | 35.0% | |
| TTTGCAGCTGCTAAATCAAT+AGG | - | chr4.4:16868283-16868302 | None:intergenic | 35.0% | |
| ! | ATTGATTTAGCAGCTGCAAA+TGG | + | chr4.4:16868283-16868302 | MS.gene08908:CDS | 35.0% |
| ! | CAAGACTAGTGGTGTTAATT+GGG | + | chr4.4:16870274-16870293 | MS.gene08908:CDS | 35.0% |
| ! | CTTTATGTTCGCAACCTTTT+CGG | - | chr4.4:16869814-16869833 | None:intergenic | 35.0% |
| ! | GATTCTTGATTTTGCTCTCT+TGG | + | chr4.4:16868681-16868700 | MS.gene08908:CDS | 35.0% |
| ! | TGGAGACACTTTTCTTCATA+TGG | + | chr4.4:16869713-16869732 | MS.gene08908:CDS | 35.0% |
| !! | AAAAGTGTCTCCATTGTGAT+TGG | - | chr4.4:16869706-16869725 | None:intergenic | 35.0% |
| !! | ATGGGGAGTTTCCATTTTTA+GGG | + | chr4.4:16869325-16869344 | MS.gene08908:intron | 35.0% |
| !! | TTGATGATGTTGCAAAGTGT+AGG | + | chr4.4:16868419-16868438 | MS.gene08908:CDS | 35.0% |
| !!! | AGGGATTCTTTGTTGGTTTT+TGG | + | chr4.4:16868586-16868605 | MS.gene08908:CDS | 35.0% |
| !!! | TCTTTGTTGGTTTTTGGTGA+AGG | + | chr4.4:16868592-16868611 | MS.gene08908:CDS | 35.0% |
| AGCTAGGAGTAAGAATTCTG+AGG | + | chr4.4:16868648-16868667 | MS.gene08908:CDS | 40.0% | |
| ATATGCTTTATGCTGCAGCT+AGG | + | chr4.4:16868632-16868651 | MS.gene08908:CDS | 40.0% | |
| ATTGCTCTACCGAAATAGTG+AGG | + | chr4.4:16869382-16869401 | MS.gene08908:intron | 40.0% | |
| CAACGTAGAGGAAAGTAAGA+AGG | - | chr4.4:16868226-16868245 | None:intergenic | 40.0% | |
| CAAGAGGGAGATAGTGAATA+GGG | + | chr4.4:16868756-16868775 | MS.gene08908:CDS | 40.0% | |
| CGAAAAGGTTGCGAACATAA+AGG | + | chr4.4:16869812-16869831 | MS.gene08908:CDS | 40.0% | |
| CTCCTTATAGTTCAACTGCT+GGG | - | chr4.4:16870681-16870700 | None:intergenic | 40.0% | |
| CTTCTTACTTTCCTCTACGT+TGG | + | chr4.4:16868224-16868243 | MS.gene08908:CDS | 40.0% | |
| GCACAAACATGTTGATACAC+TGG | + | chr4.4:16870613-16870632 | MS.gene08908:CDS | 40.0% | |
| GGTTAATGAACCTTCTCAAG+TGG | + | chr4.4:16870306-16870325 | MS.gene08908:CDS | 40.0% | |
| GTAAGAAGCCACATGTAATG+CGG | - | chr4.4:16869622-16869641 | None:intergenic | 40.0% | |
| GTTGAGAAGGGATTCTTTGT+TGG | + | chr4.4:16868579-16868598 | MS.gene08908:CDS | 40.0% | |
| TACCCAGCAGTTGAACTATA+AGG | + | chr4.4:16870676-16870695 | MS.gene08908:CDS | 40.0% | |
| TCAAGAGGGAGATAGTGAAT+AGG | + | chr4.4:16868755-16868774 | MS.gene08908:CDS | 40.0% | |
| TCATGTAACAGCAAGACTAG+TGG | + | chr4.4:16870263-16870282 | MS.gene08908:CDS | 40.0% | |
| TTACAGAGGTTACCTTCATG+TGG | + | chr4.4:16869638-16869657 | MS.gene08908:CDS | 40.0% | |
| TTACATGTGGCTTCTTACAG+AGG | + | chr4.4:16869624-16869643 | MS.gene08908:CDS | 40.0% | |
| TTGCTCTACCGAAATAGTGA+GGG | + | chr4.4:16869383-16869402 | MS.gene08908:intron | 40.0% | |
| ! | AAAACTCGTCATGGTATTGG+AGG | + | chr4.4:16870104-16870123 | MS.gene08908:CDS | 40.0% |
| ! | GCAAGACTAGTGGTGTTAAT+TGG | + | chr4.4:16870273-16870292 | MS.gene08908:CDS | 40.0% |
| ! | GTTGAATTGGATGAAGGTGT+TGG | + | chr4.4:16868721-16868740 | MS.gene08908:CDS | 40.0% |
| ! | TTTCTAGGGATCATACAAGC+AGG | - | chr4.4:16869193-16869212 | None:intergenic | 40.0% |
| !! | ACTAGTCTTGCTGTTACATG+AGG | - | chr4.4:16870264-16870283 | None:intergenic | 40.0% |
| !! | CTTGCTATGAAGTACTGACA+TGG | + | chr4.4:16869032-16869051 | MS.gene08908:intron | 40.0% |
| !! | GATGGGGAGTTTCCATTTTT+AGG | + | chr4.4:16869324-16869343 | MS.gene08908:intron | 40.0% |
| !!! | GTTTTTGGTGAAGGAGAGTA+TGG | + | chr4.4:16868601-16868620 | MS.gene08908:CDS | 40.0% |
| AAGGTTCATTAACCGTCTCG+CGG | - | chr4.4:16870300-16870319 | None:intergenic | 45.0% | |
| ACAAACTCTCTCATTCGTGG+TGG | + | chr4.4:16868493-16868512 | MS.gene08908:CDS | 45.0% | |
| AGGTAATGCCGCATTACATG+TGG | + | chr4.4:16869611-16869630 | MS.gene08908:CDS | 45.0% | |
| ATTGGTCCGTTAGAGCAAGA+GGG | - | chr4.4:16870644-16870663 | None:intergenic | 45.0% | |
| GAGTGTGAAGAAACAGCAAC+AGG | + | chr4.4:16868469-16868488 | MS.gene08908:CDS | 45.0% | |
| GCTCCTTATAGTTCAACTGC+TGG | - | chr4.4:16870682-16870701 | None:intergenic | 45.0% | |
| GCTCTCTTGGGAAAAGATTG+TGG | + | chr4.4:16868694-16868713 | MS.gene08908:CDS | 45.0% | |
| GGAACAAACTCTCTCATTCG+TGG | + | chr4.4:16868490-16868509 | MS.gene08908:CDS | 45.0% | |
| GTCAGTACTTCATAGCAAGC+AGG | - | chr4.4:16869031-16869050 | None:intergenic | 45.0% | |
| TATTGGTCCGTTAGAGCAAG+AGG | - | chr4.4:16870645-16870664 | None:intergenic | 45.0% | |
| TTCTTCTACGCCACTTGAGA+AGG | - | chr4.4:16870319-16870338 | None:intergenic | 45.0% | |
| TTGTCTAGTCTGCAGAAACC+AGG | - | chr4.4:16869759-16869778 | None:intergenic | 45.0% | |
| ! | ACTGTTTTGCATTCAGCAGC+TGG | + | chr4.4:16868883-16868902 | MS.gene08908:CDS | 45.0% |
| ! | CTAACGGACCAATAGATGGT+GGG | + | chr4.4:16870651-16870670 | MS.gene08908:CDS | 45.0% |
| ! | TAACGGACCAATAGATGGTG+GGG | + | chr4.4:16870652-16870671 | MS.gene08908:CDS | 45.0% |
| ! | TAGGTGTTGCATACCACCAT+TGG | - | chr4.4:16868264-16868283 | None:intergenic | 45.0% |
| ! | TCGTCGACTAGAAACTGTGT+GGG | + | chr4.4:16868381-16868400 | MS.gene08908:CDS | 45.0% |
| ! | TCTAACGGACCAATAGATGG+TGG | + | chr4.4:16870650-16870669 | MS.gene08908:CDS | 45.0% |
| ! | TGCTCTAACGGACCAATAGA+TGG | + | chr4.4:16870647-16870666 | MS.gene08908:CDS | 45.0% |
| ! | TTCGTCGACTAGAAACTGTG+TGG | + | chr4.4:16868380-16868399 | MS.gene08908:CDS | 45.0% |
| ! | TTGTATACTGCTGCTTCTGC+TGG | + | chr4.4:16868532-16868551 | MS.gene08908:CDS | 45.0% |
| !! | GAATTGGATGAAGGTGTTGG+TGG | + | chr4.4:16868724-16868743 | MS.gene08908:CDS | 45.0% |
| !! | TCTCTCATTCGTGGTGGATA+TGG | + | chr4.4:16868499-16868518 | MS.gene08908:CDS | 45.0% |
| !!! | TGGTGGTGGAGTTTTCAAGA+GGG | + | chr4.4:16868741-16868760 | MS.gene08908:CDS | 45.0% |
| !!! | TTGGTGGTGGAGTTTTCAAG+AGG | + | chr4.4:16868740-16868759 | MS.gene08908:CDS | 45.0% |
| ATTCATGCTGCTGCTAGAGG+AGG | + | chr4.4:16868781-16868800 | MS.gene08908:CDS | 50.0% | |
| CTTAACATTCGCGACGCAGA+TGG | + | chr4.4:16869945-16869964 | MS.gene08908:CDS | 50.0% | |
| GCTATTCATGCTGCTGCTAG+AGG | + | chr4.4:16868778-16868797 | MS.gene08908:CDS | 50.0% | |
| GGTTGAGGTAAGGACTCACA+TGG | + | chr4.4:16868915-16868934 | MS.gene08908:intron | 50.0% | |
| TGCTGCTAGAGGAGGGAATT+GGG | + | chr4.4:16868789-16868808 | MS.gene08908:CDS | 50.0% | |
| TGTGAGTCCTTACCTCAACC+TGG | - | chr4.4:16868915-16868934 | None:intergenic | 50.0% | |
| TTCACTGCAGGCCTAATGCA+AGG | + | chr4.4:16870530-16870549 | MS.gene08908:CDS | 50.0% | |
| TTCATGCTGCTGCTAGAGGA+GGG | + | chr4.4:16868782-16868801 | MS.gene08908:CDS | 50.0% | |
| TTGCATTCAGCAGCTGGAAG+AGG | + | chr4.4:16868889-16868908 | MS.gene08908:CDS | 50.0% | |
| ! | AACGGACCAATAGATGGTGG+GGG | + | chr4.4:16870653-16870672 | MS.gene08908:CDS | 50.0% |
| ! | CATGGTATTGGAGGTAGTCC+CGG | + | chr4.4:16870113-16870132 | MS.gene08908:CDS | 50.0% |
| ! | TGCTGCTTCTGCTGGTGATT+TGG | + | chr4.4:16868540-16868559 | MS.gene08908:CDS | 50.0% |
| !! | CTCATTCGTGGTGGATATGG+TGG | + | chr4.4:16868502-16868521 | MS.gene08908:CDS | 50.0% |
| !! | TTCGTGGTGGATATGGTGGA+TGG | + | chr4.4:16868506-16868525 | MS.gene08908:CDS | 50.0% |
| !! | TTGGATGAAGGTGTTGGTGG+TGG | + | chr4.4:16868727-16868746 | MS.gene08908:CDS | 50.0% |
| !!! | TTCTTTTGGAGCACAAGGGC+AGG | + | chr4.4:16870736-16870755 | MS.gene08908:CDS | 50.0% |
| AGAGCACAGGAGACCAATGG+TGG | + | chr4.4:16868248-16868267 | MS.gene08908:CDS | 55.0% | |
| CTGCTGCTAGAGGAGGGAAT+TGG | + | chr4.4:16868788-16868807 | MS.gene08908:CDS | 55.0% | |
| GGACTGCCCTCTTGCTCTAA+CGG | + | chr4.4:16870635-16870654 | MS.gene08908:CDS | 55.0% | |
| GTGTTAATTGGGCCGCGAGA+CGG | + | chr4.4:16870285-16870304 | MS.gene08908:CDS | 55.0% | |
| TGGGTACCCCCACCATCTAT+TGG | - | chr4.4:16870662-16870681 | None:intergenic | 55.0% | |
| ! | GAAGAGGCCAGGTTGAGGTA+AGG | + | chr4.4:16868905-16868924 | MS.gene08908:intron | 55.0% |
| AGCTGGAAGAGGCCAGGTTG+AGG | + | chr4.4:16868900-16868919 | MS.gene08908:CDS | 60.0% | |
| CCTGTGCTCTCCCAACGTAG+AGG | - | chr4.4:16868238-16868257 | None:intergenic | 60.0% | |
| TGGAGCACAAGGGCAGGCTT+TGG | + | chr4.4:16870742-16870761 | MS.gene08908:CDS | 60.0% | |
| TTCAGCAGCTGGAAGAGGCC+AGG | + | chr4.4:16868894-16868913 | MS.gene08908:CDS | 60.0% | |
| ! | CCTCTACGTTGGGAGAGCAC+AGG | + | chr4.4:16868235-16868254 | MS.gene08908:CDS | 60.0% |
| ! | GGGAGAGCACAGGAGACCAA+TGG | + | chr4.4:16868245-16868264 | MS.gene08908:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 16868217 | 16870829 | 16868217 | ID=MS.gene08908 |
| chr4.4 | mRNA | 16868217 | 16870829 | 16868217 | ID=MS.gene08908.t1;Parent=MS.gene08908 |
| chr4.4 | exon | 16868217 | 16868921 | 16868217 | ID=MS.gene08908.t1.exon1;Parent=MS.gene08908.t1 |
| chr4.4 | CDS | 16868217 | 16868921 | 16868217 | ID=cds.MS.gene08908.t1;Parent=MS.gene08908.t1 |
| chr4.4 | exon | 16869555 | 16870829 | 16869555 | ID=MS.gene08908.t1.exon2;Parent=MS.gene08908.t1 |
| chr4.4 | CDS | 16869555 | 16870829 | 16869555 | ID=cds.MS.gene08908.t1;Parent=MS.gene08908.t1 |
| Gene Sequence |
| Protein sequence |
