AlfalfaGEDB | MS.gene65641

M. sativa cultivar XinJiangDaYe / MS.gene65641

KEGG: -
GO: -
PFAM: PF10184.12

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene65641.t1	XP_013444769.1	97.2	211	6	0	32	242	33	243	1.30E-115	426

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene65641.t1	A0A072TMS4	97.2	211	6	0	32	242	33	243	9.1e-116	426.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene65641	0.803725	3.04E-49	-1.69E-46
MS.gene049170	MS.gene65641	0.813978	1.95E-51	-1.69E-46
MS.gene049609	MS.gene65641	0.815395	9.45E-52	-1.69E-46
MS.gene049993	MS.gene65641	0.807443	5.04E-50	-1.69E-46
MS.gene050315	MS.gene65641	0.85243	4.64E-61	-1.69E-46
MS.gene050397	MS.gene65641	0.800401	1.47E-48	-1.69E-46
MS.gene050426	MS.gene65641	-0.853044	3.10E-61	-1.69E-46
MS.gene050529	MS.gene65641	0.806484	8.04E-50	-1.69E-46
MS.gene050593	MS.gene65641	0.807186	5.72E-50	-1.69E-46
MS.gene050670	MS.gene65641	0.870106	1.88E-66	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene65641.t1	MTR_8g028545	94.239	243	13	1	1	242	1	243	1.19e-174	481
MS.gene65641.t1	MTR_4g037255	83.721	86	9	1	1	81	1	86	1.68e-44	145
MS.gene65641.t1	MTR_4g037265	54.198	131	21	2	112	242	91	182	1.93e-34	122
MS.gene65641.t1	MTR_1g081280	26.457	223	145	6	13	223	17	232	1.16e-18	82.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene65641.t1	AT2G46100	65.728	213	57	3	28	228	27	235	4.57e-102	297
MS.gene65641.t1	AT2G46100	58.000	150	47	3	28	165	27	172	1.73e-51	168
MS.gene65641.t1	AT3G04890	34.965	143	87	3	94	232	76	216	4.90e-22	91.3
MS.gene65641.t1	AT3G04890	34.965	143	87	3	94	232	80	220	5.91e-22	91.3
MS.gene65641.t1	AT3G04890	32.283	127	74	2	94	208	76	202	4.74e-16	75.5
MS.gene65641.t1	AT3G04890	32.283	127	74	2	94	208	80	206	5.44e-16	75.1

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Find 50 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGAACTGCACTAACTT+TGG	0.371780	8.4:-37246264	MS.gene65641:CDS
AACTATGAATCTTATGAAGT+GGG	0.541276	8.4:-37246223	MS.gene65641:CDS
AAGAATAGGCCTCCAAGGAA+AGG	0.586585	8.4:+37245814	None:intergenic
AAGGACTTCAGCGTTTCAAA+AGG	0.491123	8.4:-37246281	MS.gene65641:CDS
ACAGAACAATGTATTTCTTA+AGG	0.354819	8.4:-37247519	MS.gene65641:CDS
ACTAATCAGTTGGCTCGAGA+TGG	0.592513	8.4:+37244539	None:intergenic
AGAACAAAGAAGTGTGGTGA+TGG	0.594904	8.4:+37247636	None:intergenic
AGGATAAAGGAATTGGTCAC+TGG	0.548719	8.4:-37245856	MS.gene65641:CDS
AGGTTTCAAATTCAATGCAA+TGG	0.509267	8.4:-37247569	MS.gene65641:CDS
AGTCCTTTAAAAGATCCCGC+TGG	0.610274	8.4:+37246297	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACCAACAAATATGTAAGG+GGG	+	chr8.4:37247273-37247292	None:intergenic	30.0%
ACGAAAAATAAATCCAAGAG+AGG	+	chr8.4:37246545-37246564	None:intergenic	30.0%
AGGTTTCAAATTCAATGCAA+TGG	-	chr8.4:37244646-37244665	MS.gene65641:intron	30.0%
ATGTATTTCTTAAGGTTGCA+TGG	-	chr8.4:37244704-37244723	MS.gene65641:intron	30.0%
ATTAATTAGGTCTGTGAATG+TGG	-	chr8.4:37247120-37247139	MS.gene65641:intron	30.0%
ATTATACACATGTAAGTCTG+TGG	-	chr8.4:37247015-37247034	MS.gene65641:intron	30.0%
ATTCACAGACCTAATTAATC+TGG	+	chr8.4:37247119-37247138	None:intergenic	30.0%
ATTCCTAGTTACTGATAAGT+GGG	-	chr8.4:37245082-37245101	MS.gene65641:intron	30.0%
CAACTATGAATCTTATGAAG+TGG	-	chr8.4:37245991-37246010	MS.gene65641:intron	30.0%
CGAAAAATACAGATTAGTGT+TGG	-	chr8.4:37247568-37247587	MS.gene65641:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	37244544	37247693	37244544	ID=MS.gene65641
chr8.4	mRNA	37244544	37247693	37244544	ID=MS.gene65641.t1;Parent=MS.gene65641
chr8.4	exon	37247354	37247693	37247354	ID=MS.gene65641.t1.exon1;Parent=MS.gene65641.t1
chr8.4	CDS	37247354	37247693	37247354	ID=cds.MS.gene65641.t1;Parent=MS.gene65641.t1
chr8.4	exon	37246212	37246366	37246212	ID=MS.gene65641.t1.exon2;Parent=MS.gene65641.t1
chr8.4	CDS	37246212	37246366	37246212	ID=cds.MS.gene65641.t1;Parent=MS.gene65641.t1
chr8.4	exon	37245810	37245876	37245810	ID=MS.gene65641.t1.exon3;Parent=MS.gene65641.t1
chr8.4	CDS	37245810	37245876	37245810	ID=cds.MS.gene65641.t1;Parent=MS.gene65641.t1
chr8.4	exon	37245471	37245522	37245471	ID=MS.gene65641.t1.exon4;Parent=MS.gene65641.t1
chr8.4	CDS	37245471	37245522	37245471	ID=cds.MS.gene65641.t1;Parent=MS.gene65641.t1
chr8.4	exon	37245273	37245383	37245273	ID=MS.gene65641.t1.exon5;Parent=MS.gene65641.t1
chr8.4	CDS	37245273	37245383	37245273	ID=cds.MS.gene65641.t1;Parent=MS.gene65641.t1
chr8.4	exon	37244544	37244610	37244544	ID=MS.gene65641.t1.exon6;Parent=MS.gene65641.t1
chr8.4	CDS	37244544	37244610	37244544	ID=cds.MS.gene65641.t1;Parent=MS.gene65641.t1

Gene Sequence

>MS.gene65641

ATGGCATTGTCTGCTATATCTTCCATTAGTCACAACCATCACCACACTTCTTTGTTCTTTGCACCAAAACAACAACATCACCACAATAACACAAAAATCCATAGGTTTCAAATTCAATGCAATGGAACAAACCAAAATCAAGAGTCACAACAACAGAACAATGTATTTCTTAAGGTTGCATGGTATAGTTCTGAGCTTCTAGGCATTGCTGCTTCTACTTTCCGTTCTCCATCTGATGAAGAAGAAGCTTCTCCTCCTCAGAGACTTCTTCAAACCATTGATCGTGCTTCTGTTGTGGACACAATCAAACAAGATTTCCAAAGATCTTATTTTGTCACAGGTTTGATCAATGATCACATGCTTTTTCTTATGAAACGTGGATTAATACTAATTTCTTTCATTTGATTTCTGTGTTTGGGTTAACATATGCCATAGCTTCAATTTTAAGTATGGTTGTAAACTACTTTGTCTTTTTTACACATCATTTGGATGATTGATTTGTGGAGAAAGGCATGACTATTCAGAGTTGTTAGGTATGATTCCTAGTTACTGATAAGTGGGTAGGTCGGCCAGGCTCAAACGTTTGTTGGGTTATGATTGGGGGGCTGATGGAGGCTTCATATTAGATGTTAGTTAGTTACAATAATGTTACACTAGTTAGTTAAATTAGATTGATTAAAATAAACTTAGAGAAAGATGCACTTTAGAGCTGAAAGAATGAGAAAAAGTTGATTACAATCGGTGTAGATACACTTATATAGTGATCCTGATTAAACTAACAAATTTTAACTGATACATTTAACAAACTCTGACAACATCTAATAAATCTCTAACGATATCTAACACTTTGCTCCAACAGTGTGGTTCAGGAGCAATGTTGTAATATGGACAATAGTATTTAAATAAGTTGAAGTTATACACTGTAAACCGTAAGTGCTTAAAATAGCAATACAAAGGAACTGCATCCCGCTTTGCAGTCGGAGACGTAGGCGCAATTAGCTGTACTTTGTGATCAAATATTGTGTTTTCTATTTGCATTGTTTTTCGTATCTTTTACTTTTGAACCAGGTTGCTGTTCTATTCTAACAAGAGTAAACTCGAGTACTACTCAATAATGTTTTAGGGATTGGTAATGCTGAGAACAAAAAGAGGCATTGCTGAAGTGTACTCTCAGTAGTATGTTATTTTATACATGATAATCAGCAAATGATTGCTTCCTATATAATGACTGATACAAAATGAAGCTAATACAATTGGCATTTTCTAGTTAGTATTTTGATTATAATCAGATGGTTCACATGGCTGATCTATTCCTCCCAACTCTCAGGAGATCTCACATTGAATGCATATGAAGAGGATTGTGAATTTGCGGATCCAGCGGGATCTTTTAAAGGACTTCAGCGTTTCAAAAGGAACTGCACTAACTTTGGATCACTTCTGGAGAAGTCAACTATGAATCTTATGAAGTGGGAAGATTTTGAGGTGAAGATAACCTTGAACACTTTTCTACTGCTTTCTCAAATATAGAGTTTTGCAACTTAGGTTTTAAATTGTAGTTGCGATTAAAGTTGTGATTACCTTGTAACTCTTGATATTACATGCAACTGATGATAAAGGTTTCTGATGCGGCTGCAATTGCAGCTGTGATATAATTACAAAAGCCTAAGCAGCCTTAACTTAATAGAGTTTAATCTCCTGCTAAACATATCCTAGAAACTTGTGTTTTTTATATAAAAAAAATATCAATCTTTTTATCGAGTGTTGGTTGTTTCTTTGAAAAGCTTATAGTGTATTTTCATACATTTGCTCCATGACAGGATAAAGGAATTGGTCACTGGCGATTCAGCTGTATCTTGTCCTTTCCTTGGAGGCCTATTCTTTCTGGTAAATCTCAAGCATATCCATGTATATCTAATAGATTGAGCCATTGATGAACATAATGAAATTTCTGTACTATACATATTTTTGTGTATTGTATTTATCTGCATTTGACTGGAACCTCTCTTGGATTTATTTTTCGTTTTTATACTGTTATTTGCATGTTCAAATTAACATGAATCGGGTTTTTAATAGAATATGTGGCAATCACAAAATGCTTATTTAGCAGCAACAAAAAGCAGCTTAAATTATATTTATTGTACACAGTTTGACCATGTTAATATATGTTGCAGCAACTGGATACACAGAATATTATTTTGATACACAATCAGGAAAAGTATGCAGGTGAGAAAAATGTTCATTGTGATGACTCATGCACAGTTAACTAGTGTTATCATTTTCAGAATCATCTAAATTCCTGAAAACTTTCAGGCATGTGGAGCATTGGAATGTGCCAAAAATGGCTTTGTTCAAGCAAATTCTAAGGCCTAGCAAGGGATTTAGCTTAAAAGATTATGTGACTAGGTTGCTGAAGTTGTCCAGGTGAATAGGTAAATTATATAGACTGTGACAATGTCAATTGTCAATATTTCATTATACACATGTAAGTCTGTGGTATTGGTATGTACTAATTATAGAAGTCTATGGTAGAAGCTTATGATGTACTAGGAATATCCTGTATATATATGGTTTACCAGATTAATTAGGTCTGTGAATGTGGTTTTGTTACCAGAAAAAATAACAGAGAAAAGGAGATAATGTTTTTGTTACTTAAATTGAAGTTTATTTCTTGTGCACATAAAGTAAAGCTTGCTTAATTATTGATGGATTGTTCTGTACAAATTTCCCCCCCTTACATATTTGTTGGTTTATTAATTATTTGCCTTTTAATATTATGGCCAACAAATACATAAAAACAGTAAGTGGAATAGTTAGTGTTTACTTGAAAAGAAGGCTAAGTTTATATTCATCAAAGAGTGTGTTAAAAAGAGCGTGTTGTTAGCATATCTAAAATAAATTCCTCTTTCACTTCACAATCTCATCCAATAATGATATCAGTATAATAATGATTTTCTCCTAAGTCTGCCATGCTGCAAAATACAAATCTTTTCTTCATCCCACCAATCCTTATGATGTTCATCCAAACGAAAAATACAGATTAGTGTTGGTTTCTCCAATGGATTTAACTACCATACCTGAGCTAGGTCAATGACAATGGCTTTTGAAATGAAGAGTGTGACTTTACCAATGGAACCATCTCGAGCCAACTGA

Protein sequence

>MS.gene65641.t1

MALSAISSISHNHHHTSLFFAPKQQHHHNNTKIHRFQIQCNGTNQNQESQQQNNVFLKVAWYSSELLGIAASTFRSPSDEEEASPPQRLLQTIDRASVVDTIKQDFQRSYFVTGDLTLNAYEEDCEFADPAGSFKGLQRFKRNCTNFGSLLEKSTMNLMKWEDFEDKGIGHWRFSCILSFPWRPILSATGYTEYYFDTQSGKVCRHVEHWNVPKMALFKQILRPSKGFSLKDYVTRLLKLSRSMTMAFEMKSVTLPMEPSRAN