Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65641.t1 | XP_013444769.1 | 97.2 | 211 | 6 | 0 | 32 | 242 | 33 | 243 | 1.30E-115 | 426 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65641.t1 | A0A072TMS4 | 97.2 | 211 | 6 | 0 | 32 | 242 | 33 | 243 | 9.1e-116 | 426.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene65641 | 0.803725 | 3.04E-49 | -1.69E-46 |
| MS.gene049170 | MS.gene65641 | 0.813978 | 1.95E-51 | -1.69E-46 |
| MS.gene049609 | MS.gene65641 | 0.815395 | 9.45E-52 | -1.69E-46 |
| MS.gene049993 | MS.gene65641 | 0.807443 | 5.04E-50 | -1.69E-46 |
| MS.gene050315 | MS.gene65641 | 0.85243 | 4.64E-61 | -1.69E-46 |
| MS.gene050397 | MS.gene65641 | 0.800401 | 1.47E-48 | -1.69E-46 |
| MS.gene050426 | MS.gene65641 | -0.853044 | 3.10E-61 | -1.69E-46 |
| MS.gene050529 | MS.gene65641 | 0.806484 | 8.04E-50 | -1.69E-46 |
| MS.gene050593 | MS.gene65641 | 0.807186 | 5.72E-50 | -1.69E-46 |
| MS.gene050670 | MS.gene65641 | 0.870106 | 1.88E-66 | -1.69E-46 |
| MS.gene050747 | MS.gene65641 | 0.803136 | 4.03E-49 | -1.69E-46 |
| MS.gene05081 | MS.gene65641 | 0.803643 | 3.16E-49 | -1.69E-46 |
| MS.gene05105 | MS.gene65641 | 0.843586 | 1.28E-58 | -1.69E-46 |
| MS.gene051208 | MS.gene65641 | 0.814919 | 1.21E-51 | -1.69E-46 |
| MS.gene051387 | MS.gene65641 | 0.809682 | 1.68E-50 | -1.69E-46 |
| MS.gene051525 | MS.gene65641 | 0.873938 | 9.98E-68 | -1.69E-46 |
| MS.gene051582 | MS.gene65641 | 0.837092 | 6.37E-57 | -1.69E-46 |
| MS.gene051588 | MS.gene65641 | 0.815199 | 1.04E-51 | -1.69E-46 |
| MS.gene051838 | MS.gene65641 | 0.836819 | 7.48E-57 | -1.69E-46 |
| MS.gene052011 | MS.gene65641 | -0.858709 | 6.84E-63 | -1.69E-46 |
| MS.gene052077 | MS.gene65641 | 0.814171 | 1.76E-51 | -1.69E-46 |
| MS.gene052128 | MS.gene65641 | -0.80545 | 1.33E-49 | -1.69E-46 |
| MS.gene052134 | MS.gene65641 | 0.871871 | 4.91E-67 | -1.69E-46 |
| MS.gene052135 | MS.gene65641 | 0.867298 | 1.52E-65 | -1.69E-46 |
| MS.gene052136 | MS.gene65641 | 0.832722 | 8.04E-56 | -1.69E-46 |
| MS.gene052253 | MS.gene65641 | 0.841642 | 4.20E-58 | -1.69E-46 |
| MS.gene052340 | MS.gene65641 | 0.811702 | 6.14E-51 | -1.69E-46 |
| MS.gene052346 | MS.gene65641 | 0.819157 | 1.35E-52 | -1.69E-46 |
| MS.gene052414 | MS.gene65641 | 0.834194 | 3.45E-56 | -1.69E-46 |
| MS.gene052421 | MS.gene65641 | 0.807562 | 4.76E-50 | -1.69E-46 |
| MS.gene052469 | MS.gene65641 | 0.808542 | 2.94E-50 | -1.69E-46 |
| MS.gene052481 | MS.gene65641 | 0.815955 | 7.09E-52 | -1.69E-46 |
| MS.gene052501 | MS.gene65641 | 0.844629 | 6.72E-59 | -1.69E-46 |
| MS.gene052505 | MS.gene65641 | 0.859919 | 2.96E-63 | -1.69E-46 |
| MS.gene052589 | MS.gene65641 | 0.828398 | 9.19E-55 | -1.69E-46 |
| MS.gene052758 | MS.gene65641 | 0.82623 | 3.04E-54 | -1.69E-46 |
| MS.gene052762 | MS.gene65641 | 0.803779 | 2.96E-49 | -1.69E-46 |
| MS.gene052982 | MS.gene65641 | 0.852165 | 5.52E-61 | -1.69E-46 |
| MS.gene053330 | MS.gene65641 | 0.843 | 1.83E-58 | -1.69E-46 |
| MS.gene054102 | MS.gene65641 | 0.850542 | 1.59E-60 | -1.69E-46 |
| MS.gene054103 | MS.gene65641 | 0.802863 | 4.58E-49 | -1.69E-46 |
| MS.gene054107 | MS.gene65641 | 0.805817 | 1.11E-49 | -1.69E-46 |
| MS.gene054110 | MS.gene65641 | 0.84825 | 6.91E-60 | -1.69E-46 |
| MS.gene05413 | MS.gene65641 | 0.809594 | 1.75E-50 | -1.69E-46 |
| MS.gene054183 | MS.gene65641 | 0.820605 | 6.28E-53 | -1.69E-46 |
| MS.gene054719 | MS.gene65641 | 0.824472 | 7.92E-54 | -1.69E-46 |
| MS.gene054742 | MS.gene65641 | -0.807039 | 6.14E-50 | -1.69E-46 |
| MS.gene054918 | MS.gene65641 | 0.829088 | 6.26E-55 | -1.69E-46 |
| MS.gene054920 | MS.gene65641 | 0.802989 | 4.32E-49 | -1.69E-46 |
| MS.gene054927 | MS.gene65641 | 0.817025 | 4.08E-52 | -1.69E-46 |
| MS.gene055116 | MS.gene65641 | 0.842431 | 2.60E-58 | -1.69E-46 |
| MS.gene055289 | MS.gene65641 | 0.810027 | 1.41E-50 | -1.69E-46 |
| MS.gene055369 | MS.gene65641 | 0.865875 | 4.30E-65 | -1.69E-46 |
| MS.gene055370 | MS.gene65641 | 0.853431 | 2.40E-61 | -1.69E-46 |
| MS.gene055539 | MS.gene65641 | 0.833101 | 6.47E-56 | -1.69E-46 |
| MS.gene05553 | MS.gene65641 | 0.851991 | 6.19E-61 | -1.69E-46 |
| MS.gene055741 | MS.gene65641 | 0.819137 | 1.36E-52 | -1.69E-46 |
| MS.gene055744 | MS.gene65641 | 0.825729 | 4.00E-54 | -1.69E-46 |
| MS.gene05594 | MS.gene65641 | 0.816796 | 4.60E-52 | -1.69E-46 |
| MS.gene056337 | MS.gene65641 | 0.838164 | 3.38E-57 | -1.69E-46 |
| MS.gene056407 | MS.gene65641 | 0.805955 | 1.04E-49 | -1.69E-46 |
| MS.gene056511 | MS.gene65641 | 0.814411 | 1.56E-51 | -1.69E-46 |
| MS.gene056514 | MS.gene65641 | 0.83371 | 4.56E-56 | -1.69E-46 |
| MS.gene056633 | MS.gene65641 | 0.843454 | 1.39E-58 | -1.69E-46 |
| MS.gene056659 | MS.gene65641 | 0.827955 | 1.18E-54 | -1.69E-46 |
| MS.gene056782 | MS.gene65641 | 0.801843 | 7.44E-49 | -1.69E-46 |
| MS.gene056877 | MS.gene65641 | 0.825051 | 5.79E-54 | -1.69E-46 |
| MS.gene056899 | MS.gene65641 | -0.809202 | 2.13E-50 | -1.69E-46 |
| MS.gene057048 | MS.gene65641 | 0.819769 | 9.76E-53 | -1.69E-46 |
| MS.gene057124 | MS.gene65641 | 0.849573 | 2.97E-60 | -1.69E-46 |
| MS.gene057196 | MS.gene65641 | 0.810502 | 1.12E-50 | -1.69E-46 |
| MS.gene057310 | MS.gene65641 | 0.830891 | 2.27E-55 | -1.69E-46 |
| MS.gene057476 | MS.gene65641 | 0.821339 | 4.26E-53 | -1.69E-46 |
| MS.gene057749 | MS.gene65641 | 0.822678 | 2.08E-53 | -1.69E-46 |
| MS.gene057823 | MS.gene65641 | 0.823625 | 1.25E-53 | -1.69E-46 |
| MS.gene057825 | MS.gene65641 | 0.825055 | 5.78E-54 | -1.69E-46 |
| MS.gene057888 | MS.gene65641 | 0.802916 | 4.47E-49 | -1.69E-46 |
| MS.gene058007 | MS.gene65641 | 0.801533 | 8.61E-49 | -1.69E-46 |
| MS.gene058233 | MS.gene65641 | 0.814435 | 1.54E-51 | -1.69E-46 |
| MS.gene058376 | MS.gene65641 | 0.840876 | 6.68E-58 | -1.69E-46 |
| MS.gene058444 | MS.gene65641 | 0.834787 | 2.45E-56 | -1.69E-46 |
| MS.gene058700 | MS.gene65641 | 0.850745 | 1.39E-60 | -1.69E-46 |
| MS.gene058746 | MS.gene65641 | 0.830028 | 3.70E-55 | -1.69E-46 |
| MS.gene058838 | MS.gene65641 | 0.802744 | 4.85E-49 | -1.69E-46 |
| MS.gene059011 | MS.gene65641 | 0.839865 | 1.23E-57 | -1.69E-46 |
| MS.gene059420 | MS.gene65641 | 0.862454 | 5.01E-64 | -1.69E-46 |
| MS.gene059512 | MS.gene65641 | 0.835315 | 1.80E-56 | -1.69E-46 |
| MS.gene059688 | MS.gene65641 | 0.809744 | 1.63E-50 | -1.69E-46 |
| MS.gene060087 | MS.gene65641 | -0.804174 | 2.45E-49 | -1.69E-46 |
| MS.gene060403 | MS.gene65641 | 0.836062 | 1.17E-56 | -1.69E-46 |
| MS.gene060835 | MS.gene65641 | 0.825777 | 3.90E-54 | -1.69E-46 |
| MS.gene061049 | MS.gene65641 | 0.807099 | 5.96E-50 | -1.69E-46 |
| MS.gene061154 | MS.gene65641 | 0.853842 | 1.83E-61 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65641.t1 | MTR_8g028545 | 94.239 | 243 | 13 | 1 | 1 | 242 | 1 | 243 | 1.19e-174 | 481 |
| MS.gene65641.t1 | MTR_4g037255 | 83.721 | 86 | 9 | 1 | 1 | 81 | 1 | 86 | 1.68e-44 | 145 |
| MS.gene65641.t1 | MTR_4g037265 | 54.198 | 131 | 21 | 2 | 112 | 242 | 91 | 182 | 1.93e-34 | 122 |
| MS.gene65641.t1 | MTR_1g081280 | 26.457 | 223 | 145 | 6 | 13 | 223 | 17 | 232 | 1.16e-18 | 82.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65641.t1 | AT2G46100 | 65.728 | 213 | 57 | 3 | 28 | 228 | 27 | 235 | 4.57e-102 | 297 |
| MS.gene65641.t1 | AT2G46100 | 58.000 | 150 | 47 | 3 | 28 | 165 | 27 | 172 | 1.73e-51 | 168 |
| MS.gene65641.t1 | AT3G04890 | 34.965 | 143 | 87 | 3 | 94 | 232 | 76 | 216 | 4.90e-22 | 91.3 |
| MS.gene65641.t1 | AT3G04890 | 34.965 | 143 | 87 | 3 | 94 | 232 | 80 | 220 | 5.91e-22 | 91.3 |
| MS.gene65641.t1 | AT3G04890 | 32.283 | 127 | 74 | 2 | 94 | 208 | 76 | 202 | 4.74e-16 | 75.5 |
| MS.gene65641.t1 | AT3G04890 | 32.283 | 127 | 74 | 2 | 94 | 208 | 80 | 206 | 5.44e-16 | 75.1 |
Find 50 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTGGAGGCCTATTCTTTC+TGG | 0.046570 | 8.4:-37245809 | MS.gene65641:intron |
| GTTGTTGTGACTCTTGATTT+TGG | 0.256583 | 8.4:+37247540 | None:intergenic |
| CACTAACTTTGGATCACTTC+TGG | 0.287804 | 8.4:-37246253 | MS.gene65641:CDS |
| TTGTGGTGATGTTGTTGTTT+TGG | 0.314085 | 8.4:+37247608 | None:intergenic |
| TGCATTGAATTTGAAACCTA+TGG | 0.325155 | 8.4:+37247573 | None:intergenic |
| GCTGTATCTTGTCCTTTCCT+TGG | 0.347381 | 8.4:-37245826 | MS.gene65641:CDS |
| ACAGAACAATGTATTTCTTA+AGG | 0.354819 | 8.4:-37247519 | MS.gene65641:CDS |
| CTGTGACAAAATAAGATCTT+TGG | 0.367519 | 8.4:+37247354 | None:intergenic |
| CTTTGTTCAAGCAAATTCTA+AGG | 0.368956 | 8.4:-37245329 | MS.gene65641:CDS |
| TGGTATAGTTCTGAGCTTCT+AGG | 0.369490 | 8.4:-37247491 | MS.gene65641:CDS |
| AAAAGGAACTGCACTAACTT+TGG | 0.371780 | 8.4:-37246264 | MS.gene65641:CDS |
| GTATCTTGTCCTTTCCTTGG+AGG | 0.412030 | 8.4:-37245823 | MS.gene65641:CDS |
| CCATGACAGGATAAAGGAAT+TGG | 0.428536 | 8.4:-37245863 | MS.gene65641:intron |
| TTTGCTCCATGACAGGATAA+AGG | 0.440137 | 8.4:-37245869 | MS.gene65641:intron |
| CTTTCAGGCATGTGGAGCAT+TGG | 0.446746 | 8.4:-37245368 | MS.gene65641:intron |
| TGAGATTTACCAGAAAGAAT+AGG | 0.456237 | 8.4:+37245800 | None:intergenic |
| GTGGTGATGGTTGTGACTAA+TGG | 0.469661 | 8.4:+37247649 | None:intergenic |
| TGAAGAGGATTGTGAATTTG+CGG | 0.489339 | 8.4:-37246322 | MS.gene65641:CDS |
| AAGGACTTCAGCGTTTCAAA+AGG | 0.491123 | 8.4:-37246281 | MS.gene65641:CDS |
| TTTAAGCTAAATCCCTTGCT+AGG | 0.497530 | 8.4:+37245306 | None:intergenic |
| AGGTTTCAAATTCAATGCAA+TGG | 0.509267 | 8.4:-37247569 | MS.gene65641:CDS |
| ATGTATTTCTTAAGGTTGCA+TGG | 0.514798 | 8.4:-37247511 | MS.gene65641:CDS |
| CTAGGTTGCTGAAGTTGTCC+AGG | 0.518768 | 8.4:-37245272 | MS.gene65641:intron |
| GAAGCTTCTTCTTCATCAGA+TGG | 0.522340 | 8.4:+37247443 | None:intergenic |
| CACAACAGAAGCACGATCAA+TGG | 0.522503 | 8.4:+37247397 | None:intergenic |
| CACAATCAGGAAAAGTATGC+AGG | 0.531502 | 8.4:-37245470 | MS.gene65641:intron |
| CAACTATGAATCTTATGAAG+TGG | 0.531678 | 8.4:-37246224 | MS.gene65641:CDS |
| CCTGAAAACTTTCAGGCATG+TGG | 0.535655 | 8.4:-37245376 | MS.gene65641:intron |
| TTGGCTCGAGATGGTTCCAT+TGG | 0.536229 | 8.4:+37244548 | None:intergenic |
| CATTGATCGTGCTTCTGTTG+TGG | 0.537026 | 8.4:-37247396 | MS.gene65641:CDS |
| TGTGAATTTGCGGATCCAGC+GGG | 0.538988 | 8.4:-37246312 | MS.gene65641:CDS |
| CACATTGAATGCATATGAAG+AGG | 0.540073 | 8.4:-37246337 | MS.gene65641:CDS |
| AACTATGAATCTTATGAAGT+GGG | 0.541276 | 8.4:-37246223 | MS.gene65641:CDS |
| CCAGAAAGAATAGGCCTCCA+AGG | 0.545523 | 8.4:+37245809 | None:intergenic |
| AGGATAAAGGAATTGGTCAC+TGG | 0.548719 | 8.4:-37245856 | MS.gene65641:CDS |
| GCAAATTCTAAGGCCTAGCA+AGG | 0.551037 | 8.4:-37245319 | MS.gene65641:CDS |
| TGCAGCAGATACTAATCAGT+TGG | 0.554970 | 8.4:+37244529 | None:intergenic |
| CTTCTTCATCAGATGGAGAA+CGG | 0.564350 | 8.4:+37247450 | None:intergenic |
| GCTTAAAAGATTATGTGACT+AGG | 0.578708 | 8.4:-37245290 | MS.gene65641:CDS |
| AAGAATAGGCCTCCAAGGAA+AGG | 0.586585 | 8.4:+37245814 | None:intergenic |
| GAAGAGTGTGACTTTACCAA+TGG | 0.588163 | 8.4:-37244564 | MS.gene65641:CDS |
| ACTAATCAGTTGGCTCGAGA+TGG | 0.592513 | 8.4:+37244539 | None:intergenic |
| AGAACAAAGAAGTGTGGTGA+TGG | 0.594904 | 8.4:+37247636 | None:intergenic |
| AGTCCTTTAAAAGATCCCGC+TGG | 0.610274 | 8.4:+37246297 | None:intergenic |
| TTGTGAATTTGCGGATCCAG+CGG | 0.612444 | 8.4:-37246313 | MS.gene65641:CDS |
| CTGAGCTAGGTCAATGACAA+TGG | 0.620179 | 8.4:-37244597 | MS.gene65641:intron |
| GTTTGAAGAAGTCTCTGAGG+AGG | 0.641425 | 8.4:+37247419 | None:intergenic |
| CAAATTCTAAGGCCTAGCAA+GGG | 0.670959 | 8.4:-37245318 | MS.gene65641:CDS |
| ATGGTTTGAAGAAGTCTCTG+AGG | 0.694702 | 8.4:+37247416 | None:intergenic |
| GTGCAAAGAACAAAGAAGTG+TGG | 0.724805 | 8.4:+37247630 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTATACTGATATCATTAT+TGG | + | chr8.4:37247468-37247487 | None:intergenic | 15.0% |
| !!! | TAAAATTTGTTAGTTTAATC+AGG | + | chr8.4:37245312-37245331 | None:intergenic | 15.0% |
| !!! | TTATTTGCCTTTTAATATTA+TGG | - | chr8.4:37247298-37247317 | MS.gene65641:intron | 15.0% |
| !! | AAATACATAAAAACAGTAAG+TGG | - | chr8.4:37247326-37247345 | MS.gene65641:intron | 20.0% |
| !! | AATAAACCAACAAATATGTA+AGG | + | chr8.4:37247276-37247295 | None:intergenic | 20.0% |
| !! | AATTTCATTATGTTCATCAA+TGG | + | chr8.4:37246471-37246490 | None:intergenic | 20.0% |
| !! | ATAAACCAACAAATATGTAA+GGG | + | chr8.4:37247275-37247294 | None:intergenic | 20.0% |
| !! | ATGTTCAAATTAACATGAAT+CGG | - | chr8.4:37246583-37246602 | MS.gene65641:intron | 20.0% |
| !! | GATTAAACTCTATTAAGTTA+AGG | + | chr8.4:37246217-37246236 | None:intergenic | 20.0% |
| !! | TATAAAAAACACAAGTTTCT+AGG | + | chr8.4:37246255-37246274 | None:intergenic | 20.0% |
| !!! | GTATTTTGATTATAATCAGA+TGG | - | chr8.4:37245814-37245833 | MS.gene65641:CDS | 20.0% |
| !!! | TACTACTCAATAATGTTTTA+GGG | - | chr8.4:37245646-37245665 | MS.gene65641:intron | 20.0% |
| !!! | TACTGTTTTTATGTATTTGT+TGG | + | chr8.4:37247324-37247343 | None:intergenic | 20.0% |
| !!! | TATTATTTTGATACACAATC+AGG | - | chr8.4:37246732-37246751 | MS.gene65641:intron | 20.0% |
| !!! | TTTTGTATCAGTCATTATAT+AGG | + | chr8.4:37245763-37245782 | None:intergenic | 20.0% |
| ! | AACTATGAATCTTATGAAGT+GGG | - | chr8.4:37245992-37246011 | MS.gene65641:intron | 25.0% |
| ! | ACAATAACACAAAAATCCAT+AGG | - | chr8.4:37244626-37244645 | MS.gene65641:intron | 25.0% |
| ! | ACAGAACAATGTATTTCTTA+AGG | - | chr8.4:37244696-37244715 | MS.gene65641:intron | 25.0% |
| ! | AGGAATATCCTGTATATATA+TGG | - | chr8.4:37247089-37247108 | MS.gene65641:intron | 25.0% |
| ! | ATATAATTTACCTATTCACC+TGG | + | chr8.4:37246964-37246983 | None:intergenic | 25.0% |
| ! | ATGTAATATCAAGAGTTACA+AGG | + | chr8.4:37246124-37246143 | None:intergenic | 25.0% |
| ! | CAAAATGAAGCTAATACAAT+TGG | - | chr8.4:37245778-37245797 | MS.gene65641:intron | 25.0% |
| ! | CAGAAAAAATAACAGAGAAA+AGG | - | chr8.4:37247152-37247171 | MS.gene65641:intron | 25.0% |
| ! | CATACTTAAAATTGAAGCTA+TGG | + | chr8.4:37244976-37244995 | None:intergenic | 25.0% |
| ! | CTCAATCTATTAGATATACA+TGG | + | chr8.4:37246448-37246467 | None:intergenic | 25.0% |
| ! | GTACTAATTATAGAAGTCTA+TGG | - | chr8.4:37247047-37247066 | MS.gene65641:intron | 25.0% |
| ! | TAAACCAACAAATATGTAAG+GGG | + | chr8.4:37247274-37247293 | None:intergenic | 25.0% |
| ! | TATGGTTTACCAGATTAATT+AGG | - | chr8.4:37247107-37247126 | MS.gene65641:intron | 25.0% |
| ! | TGCTTAAAATAGCAATACAA+AGG | - | chr8.4:37245478-37245497 | MS.gene65641:CDS | 25.0% |
| ! | TGTTCAAATTAACATGAATC+GGG | - | chr8.4:37246584-37246603 | MS.gene65641:intron | 25.0% |
| ! | TTAGTGTTTACTTGAAAAGA+AGG | - | chr8.4:37247354-37247373 | MS.gene65641:CDS | 25.0% |
| ! | TTGTTGGCCATAATATTAAA+AGG | + | chr8.4:37247308-37247327 | None:intergenic | 25.0% |
| !! | AAAGCTTGCTTAATTATTGA+TGG | - | chr8.4:37247227-37247246 | MS.gene65641:intron | 25.0% |
| !! | AATATAGAGTTTTGCAACTT+AGG | - | chr8.4:37246064-37246083 | MS.gene65641:intron | 25.0% |
| !! | ACTAATCTGTATTTTTCGTT+TGG | + | chr8.4:37247566-37247585 | None:intergenic | 25.0% |
| !! | GAGAAAAAGTTGATTACAAT+CGG | - | chr8.4:37245263-37245282 | MS.gene65641:intron | 25.0% |
| !! | GTACTACTCAATAATGTTTT+AGG | - | chr8.4:37245645-37245664 | MS.gene65641:intron | 25.0% |
| !! | TTCATTTGATTTCTGTGTTT+GGG | - | chr8.4:37244940-37244959 | MS.gene65641:intron | 25.0% |
| !! | TTTCATTTGATTTCTGTGTT+TGG | - | chr8.4:37244939-37244958 | MS.gene65641:intron | 25.0% |
| !!! | ATTGCTATTTTAAGCACTTA+CGG | + | chr8.4:37245474-37245493 | None:intergenic | 25.0% |
| !!! | CATAGCTTCAATTTTAAGTA+TGG | - | chr8.4:37244974-37244993 | MS.gene65641:intron | 25.0% |
| !!! | CTTTTCTCTGTTATTTTTTC+TGG | + | chr8.4:37247154-37247173 | None:intergenic | 25.0% |
| !!! | TATGGATTTTTGTGTTATTG+TGG | + | chr8.4:37244627-37244646 | None:intergenic | 25.0% |
| !!! | TGTCTTTTTTACACATCATT+TGG | - | chr8.4:37245010-37245029 | MS.gene65641:intron | 25.0% |
| AAACCAACAAATATGTAAGG+GGG | + | chr8.4:37247273-37247292 | None:intergenic | 30.0% | |
| ACGAAAAATAAATCCAAGAG+AGG | + | chr8.4:37246545-37246564 | None:intergenic | 30.0% | |
| AGGTTTCAAATTCAATGCAA+TGG | - | chr8.4:37244646-37244665 | MS.gene65641:intron | 30.0% | |
| ATGTATTTCTTAAGGTTGCA+TGG | - | chr8.4:37244704-37244723 | MS.gene65641:intron | 30.0% | |
| ATTAATTAGGTCTGTGAATG+TGG | - | chr8.4:37247120-37247139 | MS.gene65641:intron | 30.0% | |
| ATTATACACATGTAAGTCTG+TGG | - | chr8.4:37247015-37247034 | MS.gene65641:intron | 30.0% | |
| ATTCACAGACCTAATTAATC+TGG | + | chr8.4:37247119-37247138 | None:intergenic | 30.0% | |
| ATTCCTAGTTACTGATAAGT+GGG | - | chr8.4:37245082-37245101 | MS.gene65641:intron | 30.0% | |
| CAACTATGAATCTTATGAAG+TGG | - | chr8.4:37245991-37246010 | MS.gene65641:intron | 30.0% | |
| CGAAAAATACAGATTAGTGT+TGG | - | chr8.4:37247568-37247587 | MS.gene65641:CDS | 30.0% | |
| CTAAATTCCTGAAAACTTTC+AGG | - | chr8.4:37246832-37246851 | MS.gene65641:intron | 30.0% | |
| CTGGTAAACCATATATATAC+AGG | + | chr8.4:37247100-37247119 | None:intergenic | 30.0% | |
| CTGTGACAAAATAAGATCTT+TGG | + | chr8.4:37244864-37244883 | None:intergenic | 30.0% | |
| CTTTGTTCAAGCAAATTCTA+AGG | - | chr8.4:37246886-37246905 | MS.gene65641:intron | 30.0% | |
| GCTTAAAAGATTATGTGACT+AGG | - | chr8.4:37246925-37246944 | MS.gene65641:intron | 30.0% | |
| TGAGATTTACCAGAAAGAAT+AGG | + | chr8.4:37246418-37246437 | None:intergenic | 30.0% | |
| TGCTGCAACATATATTAACA+TGG | + | chr8.4:37246697-37246716 | None:intergenic | 30.0% | |
| TGTATTTATCTGCATTTGAC+TGG | - | chr8.4:37246517-37246536 | MS.gene65641:intron | 30.0% | |
| TTAATATATGTTGCAGCAAC+TGG | - | chr8.4:37246699-37246718 | MS.gene65641:intron | 30.0% | |
| TTACATGCAACTGATGATAA+AGG | - | chr8.4:37246138-37246157 | MS.gene65641:intron | 30.0% | |
| TTATAATCAGATGGTTCACA+TGG | - | chr8.4:37245823-37245842 | MS.gene65641:CDS | 30.0% | |
| ! | AAGATTTGTATTTTGCAGCA+TGG | + | chr8.4:37247511-37247530 | None:intergenic | 30.0% |
| ! | CGGGTTTTTAATAGAATATG+TGG | - | chr8.4:37246603-37246622 | MS.gene65641:intron | 30.0% |
| ! | TCAATCTTTTTATCGAGTGT+TGG | - | chr8.4:37246286-37246305 | MS.gene65641:CDS | 30.0% |
| ! | TGCATTGAATTTGAAACCTA+TGG | + | chr8.4:37244645-37244664 | None:intergenic | 30.0% |
| !! | GTATCTTTTACTTTTGAACC+AGG | - | chr8.4:37245590-37245609 | MS.gene65641:intron | 30.0% |
| !! | TCATTTGGATGATTGATTTG+TGG | - | chr8.4:37245025-37245044 | MS.gene65641:intron | 30.0% |
| !!! | ATGCTTTTTCTTATGAAACG+TGG | - | chr8.4:37244901-37244920 | MS.gene65641:intron | 30.0% |
| !!! | CAAAGATCTTATTTTGTCAC+AGG | - | chr8.4:37244862-37244881 | MS.gene65641:intron | 30.0% |
| !!! | CTCAATAATGTTTTAGGGAT+TGG | - | chr8.4:37245651-37245670 | MS.gene65641:intron | 30.0% |
| AAAAGGAACTGCACTAACTT+TGG | - | chr8.4:37245951-37245970 | MS.gene65641:intron | 35.0% | |
| AACCAACAAATATGTAAGGG+GGG | + | chr8.4:37247272-37247291 | None:intergenic | 35.0% | |
| ATGAACATCATAAGGATTGG+TGG | + | chr8.4:37247543-37247562 | None:intergenic | 35.0% | |
| ATGAGATTGTGAAGTGAAAG+AGG | + | chr8.4:37247445-37247464 | None:intergenic | 35.0% | |
| CACATTGAATGCATATGAAG+AGG | - | chr8.4:37245878-37245897 | MS.gene65641:intron | 35.0% | |
| CATGACTATTCAGAGTTGTT+AGG | - | chr8.4:37245055-37245074 | MS.gene65641:intron | 35.0% | |
| CTATTAAGTTAAGGCTGCTT+AGG | + | chr8.4:37246208-37246227 | None:intergenic | 35.0% | |
| GATGATAAAGGTTTCTGATG+CGG | - | chr8.4:37246150-37246169 | MS.gene65641:intron | 35.0% | |
| GATTCCTAGTTACTGATAAG+TGG | - | chr8.4:37245081-37245100 | MS.gene65641:intron | 35.0% | |
| GGTATGGTAGTTAAATCCAT+TGG | + | chr8.4:37247599-37247618 | None:intergenic | 35.0% | |
| GTAATGCTGAGAACAAAAAG+AGG | - | chr8.4:37245673-37245692 | MS.gene65641:intron | 35.0% | |
| GTAGAAGCTTATGATGTACT+AGG | - | chr8.4:37247069-37247088 | MS.gene65641:intron | 35.0% | |
| TCAGGAGCAATGTTGTAATA+TGG | - | chr8.4:37245409-37245428 | MS.gene65641:intron | 35.0% | |
| TCGTTTGGATGAACATCATA+AGG | + | chr8.4:37247551-37247570 | None:intergenic | 35.0% | |
| TGAAGAGGATTGTGAATTTG+CGG | - | chr8.4:37245893-37245912 | MS.gene65641:intron | 35.0% | |
| TGGATGAACATCATAAGGAT+TGG | + | chr8.4:37247546-37247565 | None:intergenic | 35.0% | |
| TTTAAGCTAAATCCCTTGCT+AGG | + | chr8.4:37246912-37246931 | None:intergenic | 35.0% | |
| ! | AACGTTTGTTGGGTTATGAT+TGG | - | chr8.4:37245122-37245141 | MS.gene65641:intron | 35.0% |
| ! | ACGTTTGTTGGGTTATGATT+GGG | - | chr8.4:37245123-37245142 | MS.gene65641:intron | 35.0% |
| ! | GTTGTTGTGACTCTTGATTT+TGG | + | chr8.4:37244678-37244697 | None:intergenic | 35.0% |
| ! | TATGAAGTGGGAAGATTTTG+AGG | - | chr8.4:37246004-37246023 | MS.gene65641:intron | 35.0% |
| ! | TGAACATCATAAGGATTGGT+GGG | + | chr8.4:37247542-37247561 | None:intergenic | 35.0% |
| !! | AAGCAGTAGAAAAGTGTTCA+AGG | + | chr8.4:37246039-37246058 | None:intergenic | 35.0% |
| !! | ATTAGTGTTGGTTTCTCCAA+TGG | - | chr8.4:37247580-37247599 | MS.gene65641:CDS | 35.0% |
| !! | GATGATTGATTTGTGGAGAA+AGG | - | chr8.4:37245032-37245051 | MS.gene65641:intron | 35.0% |
| !! | GTTTCTAGGATATGTTTAGC+AGG | + | chr8.4:37246241-37246260 | None:intergenic | 35.0% |
| !! | TGCTTGAACAAAGCCATTTT+TGG | + | chr8.4:37246879-37246898 | None:intergenic | 35.0% |
| !!! | TTGTGGTGATGTTGTTGTTT+TGG | + | chr8.4:37244610-37244629 | None:intergenic | 35.0% |
| AAGGACTTCAGCGTTTCAAA+AGG | - | chr8.4:37245934-37245953 | MS.gene65641:intron | 40.0% | |
| ACCAACAAATATGTAAGGGG+GGG | + | chr8.4:37247271-37247290 | None:intergenic | 40.0% | |
| AGGATAAAGGAATTGGTCAC+TGG | - | chr8.4:37246359-37246378 | MS.gene65641:intron | 40.0% | |
| ATGGTTTGAAGAAGTCTCTG+AGG | + | chr8.4:37244802-37244821 | None:intergenic | 40.0% | |
| CACATGTAAGTCTGTGGTAT+TGG | - | chr8.4:37247021-37247040 | MS.gene65641:intron | 40.0% | |
| CACTAACTTTGGATCACTTC+TGG | - | chr8.4:37245962-37245981 | MS.gene65641:intron | 40.0% | |
| CCAATTCCTTTATCCTGTCA+TGG | + | chr8.4:37246355-37246374 | None:intergenic | 40.0% | |
| CCATGACAGGATAAAGGAAT+TGG | - | chr8.4:37246352-37246371 | MS.gene65641:intron | 40.0% | |
| CTACCCACTTATCAGTAACT+AGG | + | chr8.4:37245088-37245107 | None:intergenic | 40.0% | |
| CTAGTTACTGATAAGTGGGT+AGG | - | chr8.4:37245086-37245105 | MS.gene65641:intron | 40.0% | |
| CTTCTTCATCAGATGGAGAA+CGG | + | chr8.4:37244768-37244787 | None:intergenic | 40.0% | |
| GAAGCTTCTTCTTCATCAGA+TGG | + | chr8.4:37244775-37244794 | None:intergenic | 40.0% | |
| GCATTGGAATGTGCCAAAAA+TGG | - | chr8.4:37246863-37246882 | MS.gene65641:intron | 40.0% | |
| GTGCAAAGAACAAAGAAGTG+TGG | + | chr8.4:37244588-37244607 | None:intergenic | 40.0% | |
| GTTAGAATAGAACAGCAACC+TGG | + | chr8.4:37245611-37245630 | None:intergenic | 40.0% | |
| TCATACATTTGCTCCATGAC+AGG | - | chr8.4:37246339-37246358 | MS.gene65641:CDS | 40.0% | |
| TTAACTACCATACCTGAGCT+AGG | - | chr8.4:37247605-37247624 | MS.gene65641:CDS | 40.0% | |
| TTACTGATAAGTGGGTAGGT+CGG | - | chr8.4:37245090-37245109 | MS.gene65641:intron | 40.0% | |
| TTTGCTCCATGACAGGATAA+AGG | - | chr8.4:37246346-37246365 | MS.gene65641:CDS | 40.0% | |
| TTTGTTGGGTTATGATTGGG+GGG | - | chr8.4:37245126-37245145 | MS.gene65641:intron | 40.0% | |
| ! | AGAACAAAGAAGTGTGGTGA+TGG | + | chr8.4:37244582-37244601 | None:intergenic | 40.0% |
| ! | CACAATCAGGAAAAGTATGC+AGG | - | chr8.4:37246745-37246764 | MS.gene65641:intron | 40.0% |
| ! | CGTTTGTTGGGTTATGATTG+GGG | - | chr8.4:37245124-37245143 | MS.gene65641:intron | 40.0% |
| ! | GAAGAGTGTGACTTTACCAA+TGG | - | chr8.4:37247651-37247670 | MS.gene65641:CDS | 40.0% |
| ! | GTTTGTTGGGTTATGATTGG+GGG | - | chr8.4:37245125-37245144 | MS.gene65641:intron | 40.0% |
| !! | CAAATTCTAAGGCCTAGCAA+GGG | - | chr8.4:37246897-37246916 | MS.gene65641:intron | 40.0% |
| !! | TGGTATAGTTCTGAGCTTCT+AGG | - | chr8.4:37244724-37244743 | MS.gene65641:intron | 40.0% |
| AACACTTTGCTCCAACAGTG+TGG | - | chr8.4:37245385-37245404 | MS.gene65641:intron | 45.0% | |
| AAGAATAGGCCTCCAAGGAA+AGG | + | chr8.4:37246404-37246423 | None:intergenic | 45.0% | |
| ATCTATTCCTCCCAACTCTC+AGG | - | chr8.4:37245849-37245868 | MS.gene65641:CDS | 45.0% | |
| ATGTGAGATCTCCTGAGAGT+TGG | + | chr8.4:37245863-37245882 | None:intergenic | 45.0% | |
| CATTGATCGTGCTTCTGTTG+TGG | - | chr8.4:37244819-37244838 | MS.gene65641:intron | 45.0% | |
| CATTGTCATTGACCTAGCTC+AGG | + | chr8.4:37247620-37247639 | None:intergenic | 45.0% | |
| CATTTGACTGGAACCTCTCT+TGG | - | chr8.4:37246529-37246548 | MS.gene65641:intron | 45.0% | |
| CCTGAAAACTTTCAGGCATG+TGG | - | chr8.4:37246839-37246858 | MS.gene65641:intron | 45.0% | |
| CTGAAGTTGTCCAGGTGAAT+AGG | - | chr8.4:37246951-37246970 | MS.gene65641:intron | 45.0% | |
| CTGAGCTAGGTCAATGACAA+TGG | - | chr8.4:37247618-37247637 | MS.gene65641:CDS | 45.0% | |
| GCTGTATCTTGTCCTTTCCT+TGG | - | chr8.4:37246389-37246408 | MS.gene65641:intron | 45.0% | |
| GTATCTTGTCCTTTCCTTGG+AGG | - | chr8.4:37246392-37246411 | MS.gene65641:intron | 45.0% | |
| TCATTGACCTAGCTCAGGTA+TGG | + | chr8.4:37247615-37247634 | None:intergenic | 45.0% | |
| TCCCCCCCTTACATATTTGT+TGG | - | chr8.4:37247267-37247286 | MS.gene65641:intron | 45.0% | |
| TGTGAGATCTCCTGAGAGTT+GGG | + | chr8.4:37245862-37245881 | None:intergenic | 45.0% | |
| TTGTGAATTTGCGGATCCAG+CGG | - | chr8.4:37245902-37245921 | MS.gene65641:intron | 45.0% | |
| ! | AGTCCTTTAAAAGATCCCGC+TGG | + | chr8.4:37245921-37245940 | None:intergenic | 45.0% |
| ! | CACAACAGAAGCACGATCAA+TGG | + | chr8.4:37244821-37244840 | None:intergenic | 45.0% |
| ! | CCACATGCCTGAAAGTTTTC+AGG | + | chr8.4:37246842-37246861 | None:intergenic | 45.0% |
| ! | GATCCAGCGGGATCTTTTAA+AGG | - | chr8.4:37245915-37245934 | MS.gene65641:intron | 45.0% |
| ! | GTTTGAAGAAGTCTCTGAGG+AGG | + | chr8.4:37244799-37244818 | None:intergenic | 45.0% |
| ! | TTTTGCAGCATGGCAGACTT+AGG | + | chr8.4:37247501-37247520 | None:intergenic | 45.0% |
| !! | GCAAATTCTAAGGCCTAGCA+AGG | - | chr8.4:37246896-37246915 | MS.gene65641:intron | 45.0% |
| !! | GTGGTGATGGTTGTGACTAA+TGG | + | chr8.4:37244569-37244588 | None:intergenic | 45.0% |
| ACCCAACAAACGTTTGAGCC+TGG | + | chr8.4:37245116-37245135 | None:intergenic | 50.0% | |
| CCAGAAAGAATAGGCCTCCA+AGG | + | chr8.4:37246409-37246428 | None:intergenic | 50.0% | |
| CCTTGGAGGCCTATTCTTTC+TGG | - | chr8.4:37246406-37246425 | MS.gene65641:intron | 50.0% | |
| CTAGGTTGCTGAAGTTGTCC+AGG | - | chr8.4:37246943-37246962 | MS.gene65641:intron | 50.0% | |
| CTTTCAGGCATGTGGAGCAT+TGG | - | chr8.4:37246847-37246866 | MS.gene65641:intron | 50.0% | |
| GCCAGGCTCAAACGTTTGTT+GGG | - | chr8.4:37245112-37245131 | MS.gene65641:intron | 50.0% | |
| TGTGAATTTGCGGATCCAGC+GGG | - | chr8.4:37245903-37245922 | MS.gene65641:intron | 50.0% | |
| TTGCTCCAACAGTGTGGTTC+AGG | - | chr8.4:37245391-37245410 | MS.gene65641:intron | 50.0% | |
| TTGCTCCTGAACCACACTGT+TGG | + | chr8.4:37245399-37245418 | None:intergenic | 50.0% | |
| ! | TTGGCTCGAGATGGTTCCAT+TGG | + | chr8.4:37247670-37247689 | None:intergenic | 50.0% |
| ACTGCATCCCGCTTTGCAGT+CGG | - | chr8.4:37245502-37245521 | MS.gene65641:CDS | 55.0% | |
| CTACGTCTCCGACTGCAAAG+CGG | + | chr8.4:37245513-37245532 | None:intergenic | 55.0% | |
| GAGATCTCCTGAGAGTTGGG+AGG | + | chr8.4:37245859-37245878 | None:intergenic | 55.0% | |
| GGCCAGGCTCAAACGTTTGT+TGG | - | chr8.4:37245111-37245130 | MS.gene65641:intron | 55.0% | |
| GGTTATGATTGGGGGGCTGA+TGG | - | chr8.4:37245133-37245152 | MS.gene65641:intron | 55.0% | |
| TACGTCTCCGACTGCAAAGC+GGG | + | chr8.4:37245512-37245531 | None:intergenic | 55.0% | |
| TATGATTGGGGGGCTGATGG+AGG | - | chr8.4:37245136-37245155 | MS.gene65641:intron | 55.0% | |
| CGCTTTGCAGTCGGAGACGT+AGG | - | chr8.4:37245511-37245530 | MS.gene65641:intron | 60.0% | |
| GATAAGTGGGTAGGTCGGCC+AGG | - | chr8.4:37245095-37245114 | MS.gene65641:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 37244544 | 37247693 | 37244544 | ID=MS.gene65641 |
| chr8.4 | mRNA | 37244544 | 37247693 | 37244544 | ID=MS.gene65641.t1;Parent=MS.gene65641 |
| chr8.4 | exon | 37247354 | 37247693 | 37247354 | ID=MS.gene65641.t1.exon1;Parent=MS.gene65641.t1 |
| chr8.4 | CDS | 37247354 | 37247693 | 37247354 | ID=cds.MS.gene65641.t1;Parent=MS.gene65641.t1 |
| chr8.4 | exon | 37246212 | 37246366 | 37246212 | ID=MS.gene65641.t1.exon2;Parent=MS.gene65641.t1 |
| chr8.4 | CDS | 37246212 | 37246366 | 37246212 | ID=cds.MS.gene65641.t1;Parent=MS.gene65641.t1 |
| chr8.4 | exon | 37245810 | 37245876 | 37245810 | ID=MS.gene65641.t1.exon3;Parent=MS.gene65641.t1 |
| chr8.4 | CDS | 37245810 | 37245876 | 37245810 | ID=cds.MS.gene65641.t1;Parent=MS.gene65641.t1 |
| chr8.4 | exon | 37245471 | 37245522 | 37245471 | ID=MS.gene65641.t1.exon4;Parent=MS.gene65641.t1 |
| chr8.4 | CDS | 37245471 | 37245522 | 37245471 | ID=cds.MS.gene65641.t1;Parent=MS.gene65641.t1 |
| chr8.4 | exon | 37245273 | 37245383 | 37245273 | ID=MS.gene65641.t1.exon5;Parent=MS.gene65641.t1 |
| chr8.4 | CDS | 37245273 | 37245383 | 37245273 | ID=cds.MS.gene65641.t1;Parent=MS.gene65641.t1 |
| chr8.4 | exon | 37244544 | 37244610 | 37244544 | ID=MS.gene65641.t1.exon6;Parent=MS.gene65641.t1 |
| chr8.4 | CDS | 37244544 | 37244610 | 37244544 | ID=cds.MS.gene65641.t1;Parent=MS.gene65641.t1 |
| Gene Sequence |
| Protein sequence |
