Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054438.t1 | XP_003626243.1 | 96.9 | 319 | 10 | 0 | 1 | 319 | 1 | 319 | 2.80E-186 | 661 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054438.t1 | I6YGS0 | 37.2 | 320 | 181 | 7 | 7 | 316 | 7 | 316 | 1.7e-54 | 214.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054438.t1 | A2Q320 | 96.9 | 319 | 10 | 0 | 1 | 319 | 1 | 319 | 2.0e-186 | 661.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene054438 | MS.gene041604 | PPI |
| MS.gene054438 | MS.gene77823 | PPI |
| MS.gene054438 | MS.gene025707 | PPI |
| MS.gene054438 | MS.gene22955 | PPI |
| MS.gene054438 | MS.gene035369 | PPI |
| MS.gene035367 | MS.gene054438 | PPI |
| MS.gene054438 | MS.gene76453 | PPI |
| MS.gene054438 | MS.gene035373 | PPI |
| MS.gene054438 | MS.gene07001 | PPI |
| MS.gene054438 | MS.gene012063 | PPI |
| MS.gene054438 | MS.gene035371 | PPI |
| MS.gene054438 | MS.gene071502 | PPI |
| MS.gene054438 | MS.gene071504 | PPI |
| MS.gene066360 | MS.gene054438 | PPI |
| MS.gene89620 | MS.gene054438 | PPI |
| MS.gene054438 | MS.gene066361 | PPI |
| MS.gene054438 | MS.gene071500 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054438.t1 | MTR_7g113020 | 96.865 | 319 | 10 | 0 | 1 | 319 | 1 | 319 | 0.0 | 644 |
| MS.gene054438.t1 | MTR_7g112615 | 89.342 | 319 | 34 | 0 | 1 | 319 | 1 | 319 | 0.0 | 604 |
| MS.gene054438.t1 | MTR_7g113050 | 88.401 | 319 | 37 | 0 | 1 | 319 | 1 | 319 | 0.0 | 601 |
| MS.gene054438.t1 | MTR_7g112620 | 87.774 | 319 | 39 | 0 | 1 | 319 | 1 | 319 | 0.0 | 599 |
| MS.gene054438.t1 | MTR_7g113030 | 87.774 | 319 | 39 | 0 | 1 | 319 | 1 | 319 | 0.0 | 595 |
| MS.gene054438.t1 | MTR_7g112960 | 77.570 | 321 | 68 | 2 | 1 | 319 | 1 | 319 | 0.0 | 525 |
| MS.gene054438.t1 | MTR_7g112963 | 78.505 | 321 | 65 | 2 | 1 | 319 | 1 | 319 | 0.0 | 525 |
| MS.gene054438.t1 | MTR_7g112970 | 76.489 | 319 | 72 | 2 | 1 | 319 | 1 | 316 | 0.0 | 520 |
| MS.gene054438.t1 | MTR_4g005160 | 72.755 | 323 | 83 | 3 | 1 | 319 | 1 | 322 | 0.0 | 506 |
| MS.gene054438.t1 | MTR_7g112615 | 87.395 | 238 | 30 | 0 | 1 | 238 | 1 | 238 | 1.29e-160 | 447 |
| MS.gene054438.t1 | MTR_7g113050 | 86.975 | 238 | 31 | 0 | 1 | 238 | 1 | 238 | 2.16e-160 | 447 |
| MS.gene054438.t1 | MTR_7g113010 | 72.085 | 283 | 75 | 2 | 1 | 281 | 1 | 281 | 1.35e-151 | 438 |
| MS.gene054438.t1 | MTR_4g120240 | 61.994 | 321 | 118 | 3 | 1 | 319 | 37 | 355 | 5.36e-147 | 417 |
| MS.gene054438.t1 | MTR_7g108825 | 61.129 | 319 | 122 | 2 | 1 | 319 | 1 | 317 | 6.14e-145 | 411 |
| MS.gene054438.t1 | MTR_8g076680 | 47.022 | 319 | 165 | 3 | 1 | 319 | 3 | 317 | 5.79e-105 | 310 |
| MS.gene054438.t1 | MTR_7g112615 | 87.421 | 159 | 20 | 0 | 1 | 159 | 1 | 159 | 2.07e-102 | 298 |
| MS.gene054438.t1 | MTR_7g108825 | 58.824 | 238 | 96 | 2 | 1 | 238 | 1 | 236 | 3.06e-100 | 295 |
| MS.gene054438.t1 | MTR_7g112910 | 59.438 | 249 | 46 | 5 | 72 | 319 | 1 | 195 | 1.39e-91 | 271 |
| MS.gene054438.t1 | MTR_1g083480 | 74.214 | 159 | 37 | 2 | 1 | 156 | 1 | 158 | 2.75e-85 | 254 |
| MS.gene054438.t1 | MTR_8g076680 | 47.479 | 238 | 123 | 2 | 1 | 238 | 3 | 238 | 9.34e-80 | 243 |
| MS.gene054438.t1 | MTR_2g090240 | 36.449 | 321 | 190 | 7 | 1 | 318 | 1 | 310 | 4.10e-67 | 213 |
| MS.gene054438.t1 | MTR_2g090245 | 35.514 | 321 | 193 | 7 | 1 | 318 | 1 | 310 | 2.05e-64 | 206 |
| MS.gene054438.t1 | MTR_4g089060 | 36.137 | 321 | 190 | 6 | 1 | 318 | 1 | 309 | 2.91e-64 | 205 |
| MS.gene054438.t1 | MTR_4g089040 | 35.514 | 321 | 192 | 6 | 1 | 318 | 1 | 309 | 2.86e-62 | 200 |
| MS.gene054438.t1 | MTR_4g089060 | 33.621 | 348 | 189 | 7 | 1 | 318 | 1 | 336 | 4.65e-59 | 193 |
| MS.gene054438.t1 | MTR_3g024250 | 77.358 | 106 | 24 | 0 | 47 | 152 | 2 | 107 | 5.13e-56 | 178 |
| MS.gene054438.t1 | MTR_4g089060 | 38.197 | 233 | 135 | 3 | 1 | 231 | 1 | 226 | 4.19e-52 | 171 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054438.t1 | AT3G05600 | 64.198 | 324 | 111 | 4 | 1 | 319 | 1 | 324 | 5.89e-158 | 444 |
| MS.gene054438.t1 | AT4G02340 | 60.125 | 321 | 121 | 4 | 1 | 319 | 1 | 316 | 2.79e-145 | 412 |
| MS.gene054438.t1 | AT2G26740 | 63.043 | 322 | 112 | 4 | 4 | 319 | 1 | 321 | 6.63e-136 | 388 |
| MS.gene054438.t1 | AT2G26750 | 60.748 | 321 | 120 | 4 | 4 | 319 | 1 | 320 | 1.20e-129 | 372 |
| MS.gene054438.t1 | AT4G15960 | 53.846 | 325 | 143 | 3 | 1 | 319 | 51 | 374 | 4.58e-129 | 373 |
| MS.gene054438.t1 | AT3G05600 | 65.021 | 243 | 80 | 4 | 1 | 238 | 1 | 243 | 1.66e-115 | 333 |
| MS.gene054438.t1 | AT4G15955 | 50.307 | 326 | 124 | 4 | 5 | 319 | 6 | 304 | 1.18e-110 | 323 |
| MS.gene054438.t1 | AT3G51000 | 46.177 | 327 | 155 | 6 | 3 | 319 | 4 | 319 | 3.36e-102 | 303 |
| MS.gene054438.t1 | AT4G15955 | 59.195 | 174 | 61 | 2 | 5 | 168 | 6 | 179 | 1.49e-71 | 219 |
| MS.gene054438.t1 | AT4G15955 | 58.788 | 165 | 58 | 2 | 5 | 159 | 6 | 170 | 6.13e-67 | 207 |
Find 85 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATAGGCTTTGATTCTTTC+AGG | 0.119767 | 7.4:-3868523 | None:intergenic |
| CAAGGAAGATGTGCCGAATT+TGG | 0.238850 | 7.4:+3869566 | MS.gene054438:CDS |
| GTGGGATTTCTATGGTTAAA+TGG | 0.244625 | 7.4:-3868559 | None:intergenic |
| TTATTATATATGCAGATTTC+AGG | 0.249339 | 7.4:+3868624 | MS.gene054438:CDS |
| AGCCAAGTGGGCAAGGTGTC+AGG | 0.263626 | 7.4:-3869197 | None:intergenic |
| GTCTCCAAATTTGAGAAAAC+TGG | 0.263633 | 7.4:+3869245 | MS.gene054438:CDS |
| AAAATGCATATTGCTGAAAA+AGG | 0.266560 | 7.4:+3868220 | MS.gene054438:CDS |
| GAAATTCATTACAGGTGATT+TGG | 0.277422 | 7.4:+3869491 | MS.gene054438:CDS |
| CATTACAGGTGATTTGGATA+TGG | 0.296487 | 7.4:+3869497 | MS.gene054438:CDS |
| CATGATTGGGGTGCCATAAT+TGG | 0.299980 | 7.4:+3868478 | MS.gene054438:CDS |
| GCAAAGATACCAACCAATTA+TGG | 0.300239 | 7.4:-3868491 | None:intergenic |
| GCTTCACTGTGGGATTTCTA+TGG | 0.303219 | 7.4:-3868567 | None:intergenic |
| ATACTTCCCAAGGGAGAGTT+TGG | 0.318913 | 7.4:+3869152 | MS.gene054438:CDS |
| CCCCTGACACCTTGCCCACT+TGG | 0.359209 | 7.4:+3869195 | MS.gene054438:CDS |
| TGTTTCTTGTAGCTCATGAT+TGG | 0.362025 | 7.4:+3868464 | MS.gene054438:CDS |
| GTCCTCACAACTCGCAAAAC+TGG | 0.362682 | 7.4:+3869122 | MS.gene054438:CDS |
| CGCCAAGAGTACCAGAGTTC+AGG | 0.381681 | 7.4:-3868280 | None:intergenic |
| CGCCACCAGATTGCTGCTCT+CGG | 0.393921 | 7.4:+3868301 | MS.gene054438:CDS |
| CCCAAGGGAGAGTTTGGAAC+TGG | 0.394498 | 7.4:+3869158 | MS.gene054438:CDS |
| GTTTCTTGTAGCTCATGATT+GGG | 0.395980 | 7.4:+3868465 | MS.gene054438:CDS |
| ACAATCACTTCCTCCAAATT+CGG | 0.398594 | 7.4:-3869579 | None:intergenic |
| TCACCGTAGCCACGAAGATC+TGG | 0.407123 | 7.4:-3868349 | None:intergenic |
| GATGGTAGGCGTGCTGCTTA+TGG | 0.410127 | 7.4:+3868595 | MS.gene054438:CDS |
| GAGGAAGTGATTGTGCAAAA+AGG | 0.414023 | 7.4:+3869588 | MS.gene054438:CDS |
| GGCAAGGTGTCAGGGGTATC+CGG | 0.423975 | 7.4:-3869188 | None:intergenic |
| CCCACAGTGAAGCCTATTGA+TGG | 0.430826 | 7.4:+3868577 | MS.gene054438:CDS |
| GTGCCTGTGAAATTCATTAC+AGG | 0.432209 | 7.4:+3869483 | MS.gene054438:CDS |
| CATAGGCTTTGATTCTTTCA+GGG | 0.432762 | 7.4:-3868522 | None:intergenic |
| CTAATTGTATTGCAGAAATT+GGG | 0.433325 | 7.4:+3869425 | MS.gene054438:intron |
| AACTCTCCCTTGGGAAGTAT+TGG | 0.434048 | 7.4:-3869149 | None:intergenic |
| TTCCTGAACTCTGGTACTCT+TGG | 0.435109 | 7.4:+3868278 | MS.gene054438:CDS |
| GAGAGCCGAGAGCAGCAATC+TGG | 0.444182 | 7.4:-3868306 | None:intergenic |
| TCCAGTTCCAAACTCTCCCT+TGG | 0.447351 | 7.4:-3869159 | None:intergenic |
| TTTGAGAAAACTGGCTTCAC+CGG | 0.453864 | 7.4:+3869254 | MS.gene054438:CDS |
| GCAGCACGCCTACCATCAAT+AGG | 0.474978 | 7.4:-3868589 | None:intergenic |
| ATTGCTGCTCTCGGCTCTCT+CGG | 0.478105 | 7.4:+3868310 | MS.gene054438:CDS |
| CCGTGAAGGAACAAAACAAC+AGG | 0.484752 | 7.4:-3868253 | None:intergenic |
| TATCCATGGTGGAGGATTCA+AGG | 0.490724 | 7.4:+3869548 | MS.gene054438:CDS |
| CCAGTTCCAAACTCTCCCTT+GGG | 0.499868 | 7.4:-3869158 | None:intergenic |
| TTCACGGCTTTCCTGAACTC+TGG | 0.502205 | 7.4:+3868269 | MS.gene054438:CDS |
| GCTCCAGATCTTCGTGGCTA+CGG | 0.504735 | 7.4:+3868346 | MS.gene054438:CDS |
| TCTCCCTTGGGAAGTATTGG+AGG | 0.509088 | 7.4:-3869146 | None:intergenic |
| TTCTGTGAGCCAAGTGGGCA+AGG | 0.510522 | 7.4:-3869204 | None:intergenic |
| CACAGAACAGTGGAAGTGAA+TGG | 0.515742 | 7.4:+3868193 | MS.gene054438:CDS |
| GTTTGGAACTGGATTCAATC+CGG | 0.516376 | 7.4:+3869169 | MS.gene054438:CDS |
| GCTGTTGCTCCAGATCTTCG+TGG | 0.527210 | 7.4:+3868340 | MS.gene054438:CDS |
| TCTATAGTAATTCAATCCTC+CGG | 0.530404 | 7.4:-3869273 | None:intergenic |
| GTTGCTCTCATCAACATGCT+TGG | 0.544081 | 7.4:+3868430 | MS.gene054438:CDS |
| TTATCTATATTACAGGAACC+TGG | 0.544877 | 7.4:+3869047 | MS.gene054438:intron |
| CTACGGTGACACCGATGCTC+CGG | 0.550138 | 7.4:+3868363 | MS.gene054438:CDS |
| GCCAAGTGGGCAAGGTGTCA+GGG | 0.551540 | 7.4:-3869196 | None:intergenic |
| AATAGAAGCTGAGATAGCTC+AGG | 0.557396 | 7.4:+3869073 | MS.gene054438:CDS |
| GCGTAGCTGCTAATCGAAGC+CGG | 0.557719 | 7.4:-3868382 | None:intergenic |
| TCATCTTCTGTGAGCCAAGT+GGG | 0.568184 | 7.4:-3869209 | None:intergenic |
| AGCCGAGAGCAGCAATCTGG+TGG | 0.568882 | 7.4:-3868303 | None:intergenic |
| TCACCTGTAATGAATTTCAC+AGG | 0.570947 | 7.4:-3869486 | None:intergenic |
| TGGTCCTCCAATACTTCCCA+AGG | 0.570977 | 7.4:+3869142 | MS.gene054438:CDS |
| GGAAGATGTGCCGAATTTGG+AGG | 0.573365 | 7.4:+3869569 | MS.gene054438:CDS |
| CAACAATCAAGAAGCTGCAG+AGG | 0.574119 | 7.4:+3869623 | MS.gene054438:CDS |
| GCTAATCGAAGCCGGAGCAT+CGG | 0.580714 | 7.4:-3868374 | None:intergenic |
| AAGGAGTATATCCATGGTGG+AGG | 0.581533 | 7.4:+3869540 | MS.gene054438:CDS |
| TGGAACACTGAGACAAACAT+AGG | 0.583516 | 7.4:-3868539 | None:intergenic |
| TTTCTTGTAGCTCATGATTG+GGG | 0.597857 | 7.4:+3868466 | MS.gene054438:CDS |
| CAGTGAAGCCTATTGATGGT+AGG | 0.598963 | 7.4:+3868581 | MS.gene054438:CDS |
| ATGGAGTGGAGTGAAAATCA+AGG | 0.603056 | 7.4:+3869461 | MS.gene054438:CDS |
| GAGAAAACTGGCTTCACCGG+AGG | 0.603917 | 7.4:+3869257 | MS.gene054438:CDS |
| ATTGGGGTGCCATAATTGGT+TGG | 0.621886 | 7.4:+3868482 | MS.gene054438:CDS |
| CATGTGAAGGAGTATATCCA+TGG | 0.624062 | 7.4:+3869534 | MS.gene054438:CDS |
| GTACACCTCGCCACATGTGA+AGG | 0.626457 | 7.4:+3869521 | MS.gene054438:CDS |
| CCAAGTGGGCAAGGTGTCAG+GGG | 0.627753 | 7.4:-3869195 | None:intergenic |
| AGAGTTCAGGAAAGCCGTGA+AGG | 0.628117 | 7.4:-3868267 | None:intergenic |
| GAGCTCACAGCACCATGGAG+TGG | 0.632984 | 7.4:+3869447 | MS.gene054438:CDS |
| TGGATATACTCCTTCACATG+TGG | 0.645588 | 7.4:-3869531 | None:intergenic |
| CCATCAATAGGCTTCACTGT+GGG | 0.651934 | 7.4:-3868577 | None:intergenic |
| GAAGCTGAGATAGCTCAGGT+TGG | 0.661961 | 7.4:+3869077 | MS.gene054438:CDS |
| ATCATCTTCTGTGAGCCAAG+TGG | 0.662860 | 7.4:-3869210 | None:intergenic |
| ATACTCCTTCACATGTGGCG+AGG | 0.664549 | 7.4:-3869526 | None:intergenic |
| ATTGGGAGCTCACAGCACCA+TGG | 0.668315 | 7.4:+3869442 | MS.gene054438:CDS |
| AGGAATAGAACACAGAACAG+TGG | 0.676997 | 7.4:+3868183 | MS.gene054438:CDS |
| GAAGATCTGGAGCAACAGCA+CGG | 0.677123 | 7.4:-3868336 | None:intergenic |
| TCTCATCAACATGCTTGGTG+TGG | 0.677560 | 7.4:+3868435 | MS.gene054438:CDS |
| CTTCCTTGAATCCTCCACCA+TGG | 0.680547 | 7.4:-3869551 | None:intergenic |
| GGTCCTCCAATACTTCCCAA+GGG | 0.690564 | 7.4:+3869143 | MS.gene054438:CDS |
| GTGAAGGAGTATATCCATGG+TGG | 0.691244 | 7.4:+3869537 | MS.gene054438:CDS |
| ACCATCAATAGGCTTCACTG+TGG | 0.749226 | 7.4:-3868578 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCAATTATTAAGAATTATT+AGG | - | chr7.4:3868674-3868693 | None:intergenic | 10.0% |
| !! | AATCAATCAATTATGTTAAT+CGG | - | chr7.4:3868701-3868720 | None:intergenic | 15.0% |
| !! | ATTATTAGGAATATTAGTTA+TGG | - | chr7.4:3868660-3868679 | None:intergenic | 15.0% |
| !!! | GAATAATTTAACAAAGTATT+AGG | + | chr7.4:3868843-3868862 | MS.gene054438:intron | 15.0% |
| !!! | TTGTTTTTTATCTATATTAC+AGG | + | chr7.4:3869040-3869059 | MS.gene054438:intron | 15.0% |
| !! | AATGATTCCAAATATTATAC+TGG | - | chr7.4:3868960-3868979 | None:intergenic | 20.0% |
| !! | AGTTTAAATTATTCACAAAC+AGG | - | chr7.4:3868794-3868813 | None:intergenic | 20.0% |
| !! | ATATTTGTCGAAAACAATTA+TGG | - | chr7.4:3869334-3869353 | None:intergenic | 20.0% |
| !! | GTTTGTGAATAATTTAAACT+AGG | + | chr7.4:3868794-3868813 | MS.gene054438:intron | 20.0% |
| !! | TTATTATATATGCAGATTTC+AGG | + | chr7.4:3868624-3868643 | MS.gene054438:CDS | 20.0% |
| !!! | ATAAATCAACTATCCTTTTT+GGG | + | chr7.4:3869352-3869371 | MS.gene054438:intron | 20.0% |
| !!! | TATAAATCAACTATCCTTTT+TGG | + | chr7.4:3869351-3869370 | MS.gene054438:intron | 20.0% |
| ! | AAAATGCATATTGCTGAAAA+AGG | + | chr7.4:3868220-3868239 | MS.gene054438:CDS | 25.0% |
| ! | ACTAATTGTATTGCAGAAAT+TGG | + | chr7.4:3869424-3869443 | MS.gene054438:intron | 25.0% |
| ! | CTAATTGTATTGCAGAAATT+GGG | + | chr7.4:3869425-3869444 | MS.gene054438:intron | 25.0% |
| ! | GTTTAACTGTCATTAGAATT+CGG | - | chr7.4:3869406-3869425 | None:intergenic | 25.0% |
| ! | TGATACATGAGAATTAAACA+AGG | + | chr7.4:3868872-3868891 | MS.gene054438:intron | 25.0% |
| !! | TAAATCAACTATCCTTTTTG+GGG | + | chr7.4:3869353-3869372 | MS.gene054438:intron | 25.0% |
| ATTGCTGAAAAAGGAAAAGA+AGG | + | chr7.4:3868229-3868248 | MS.gene054438:CDS | 30.0% | |
| GAAATTCATTACAGGTGATT+TGG | + | chr7.4:3869491-3869510 | MS.gene054438:CDS | 30.0% | |
| GAATTGCTATAATGGTAGAT+AGG | + | chr7.4:3869007-3869026 | MS.gene054438:intron | 30.0% | |
| TAATTAATCTCACGCTTCTA+TGG | + | chr7.4:3868725-3868744 | MS.gene054438:intron | 30.0% | |
| TCTATAGTAATTCAATCCTC+CGG | - | chr7.4:3869276-3869295 | None:intergenic | 30.0% | |
| TCTTGTCAATTTAGATTGAG+TGG | + | chr7.4:3868902-3868921 | MS.gene054438:intron | 30.0% | |
| TGAAGTGAGAATTGCTATAA+TGG | + | chr7.4:3868999-3869018 | MS.gene054438:intron | 30.0% | |
| TTATCTATATTACAGGAACC+TGG | + | chr7.4:3869047-3869066 | MS.gene054438:intron | 30.0% | |
| ACAATCACTTCCTCCAAATT+CGG | - | chr7.4:3869582-3869601 | None:intergenic | 35.0% | |
| GCAAAGATACCAACCAATTA+TGG | - | chr7.4:3868494-3868513 | None:intergenic | 35.0% | |
| GCACAAATATTTCCCCAAAA+AGG | - | chr7.4:3869368-3869387 | None:intergenic | 35.0% | |
| GTCTCCAAATTTGAGAAAAC+TGG | + | chr7.4:3869245-3869264 | MS.gene054438:CDS | 35.0% | |
| GTGGGATTTCTATGGTTAAA+TGG | - | chr7.4:3868562-3868581 | None:intergenic | 35.0% | |
| GTTTCTTGTAGCTCATGATT+GGG | + | chr7.4:3868465-3868484 | MS.gene054438:CDS | 35.0% | |
| TCACCTGTAATGAATTTCAC+AGG | - | chr7.4:3869489-3869508 | None:intergenic | 35.0% | |
| TGGAGCTCCAGTATAATATT+TGG | + | chr7.4:3868950-3868969 | MS.gene054438:intron | 35.0% | |
| TGTTTCTTGTAGCTCATGAT+TGG | + | chr7.4:3868464-3868483 | MS.gene054438:CDS | 35.0% | |
| TTTCTTGTAGCTCATGATTG+GGG | + | chr7.4:3868466-3868485 | MS.gene054438:CDS | 35.0% | |
| ! | ACATAGGCTTTGATTCTTTC+AGG | - | chr7.4:3868526-3868545 | None:intergenic | 35.0% |
| ! | CATAGGCTTTGATTCTTTCA+GGG | - | chr7.4:3868525-3868544 | None:intergenic | 35.0% |
| ! | CATTACAGGTGATTTGGATA+TGG | + | chr7.4:3869497-3869516 | MS.gene054438:CDS | 35.0% |
| ! | GAAGCCAGTTTTCTCAAATT+TGG | - | chr7.4:3869252-3869271 | None:intergenic | 35.0% |
| ! | GATGATGGTGTGTTATGTTA+TGG | + | chr7.4:3868930-3868949 | MS.gene054438:intron | 35.0% |
| ! | TACGCATGTTTTCACATAGT+AGG | + | chr7.4:3868400-3868419 | MS.gene054438:CDS | 35.0% |
| AATAGAAGCTGAGATAGCTC+AGG | + | chr7.4:3869073-3869092 | MS.gene054438:CDS | 40.0% | |
| AGGAATAGAACACAGAACAG+TGG | + | chr7.4:3868183-3868202 | MS.gene054438:CDS | 40.0% | |
| ATGGAGTGGAGTGAAAATCA+AGG | + | chr7.4:3869461-3869480 | MS.gene054438:CDS | 40.0% | |
| GAGGAAGTGATTGTGCAAAA+AGG | + | chr7.4:3869588-3869607 | MS.gene054438:CDS | 40.0% | |
| GATTGAGTGGTGTTTGATGA+TGG | + | chr7.4:3868915-3868934 | MS.gene054438:intron | 40.0% | |
| GTGCCTGTGAAATTCATTAC+AGG | + | chr7.4:3869483-3869502 | MS.gene054438:CDS | 40.0% | |
| TGGAACACTGAGACAAACAT+AGG | - | chr7.4:3868542-3868561 | None:intergenic | 40.0% | |
| TGGATATACTCCTTCACATG+TGG | - | chr7.4:3869534-3869553 | None:intergenic | 40.0% | |
| ! | ATCTCAGCTTCTATTTTGCC+AGG | - | chr7.4:3869068-3869087 | None:intergenic | 40.0% |
| ! | CATGTGAAGGAGTATATCCA+TGG | + | chr7.4:3869534-3869553 | MS.gene054438:CDS | 40.0% |
| ! | GTTTGGAACTGGATTCAATC+CGG | + | chr7.4:3869169-3869188 | MS.gene054438:CDS | 40.0% |
| ! | TTGATTTTCACTCCACTCCA+TGG | - | chr7.4:3869462-3869481 | None:intergenic | 40.0% |
| ! | TTTGAGAAAACTGGCTTCAC+CGG | + | chr7.4:3869254-3869273 | MS.gene054438:CDS | 40.0% |
| !!! | CCTGTTGTTTTGTTCCTTCA+CGG | + | chr7.4:3868253-3868272 | MS.gene054438:CDS | 40.0% |
| ACCATCAATAGGCTTCACTG+TGG | - | chr7.4:3868581-3868600 | None:intergenic | 45.0% | |
| ATACTTCCCAAGGGAGAGTT+TGG | + | chr7.4:3869152-3869171 | MS.gene054438:CDS | 45.0% | |
| ATCATCTTCTGTGAGCCAAG+TGG | - | chr7.4:3869213-3869232 | None:intergenic | 45.0% | |
| CAACAATCAAGAAGCTGCAG+AGG | + | chr7.4:3869623-3869642 | MS.gene054438:CDS | 45.0% | |
| CAAGGAAGATGTGCCGAATT+TGG | + | chr7.4:3869566-3869585 | MS.gene054438:CDS | 45.0% | |
| CACAGAACAGTGGAAGTGAA+TGG | + | chr7.4:3868193-3868212 | MS.gene054438:CDS | 45.0% | |
| CCATCAATAGGCTTCACTGT+GGG | - | chr7.4:3868580-3868599 | None:intergenic | 45.0% | |
| CCGTGAAGGAACAAAACAAC+AGG | - | chr7.4:3868256-3868275 | None:intergenic | 45.0% | |
| GCTTCACTGTGGGATTTCTA+TGG | - | chr7.4:3868570-3868589 | None:intergenic | 45.0% | |
| GGGGAAATATTTGTGCAAGC+AGG | + | chr7.4:3869372-3869391 | MS.gene054438:intron | 45.0% | |
| GTTGCTCTCATCAACATGCT+TGG | + | chr7.4:3868430-3868449 | MS.gene054438:CDS | 45.0% | |
| TCATCTTCTGTGAGCCAAGT+GGG | - | chr7.4:3869212-3869231 | None:intergenic | 45.0% | |
| TTCCTGAACTCTGGTACTCT+TGG | + | chr7.4:3868278-3868297 | MS.gene054438:CDS | 45.0% | |
| ! | AACTCTCCCTTGGGAAGTAT+TGG | - | chr7.4:3869152-3869171 | None:intergenic | 45.0% |
| ! | AAGGAGTATATCCATGGTGG+AGG | + | chr7.4:3869540-3869559 | MS.gene054438:CDS | 45.0% |
| ! | ATTGGGGTGCCATAATTGGT+TGG | + | chr7.4:3868482-3868501 | MS.gene054438:CDS | 45.0% |
| ! | CAGTGAAGCCTATTGATGGT+AGG | + | chr7.4:3868581-3868600 | MS.gene054438:CDS | 45.0% |
| ! | CATGATTGGGGTGCCATAAT+TGG | + | chr7.4:3868478-3868497 | MS.gene054438:CDS | 45.0% |
| ! | GTGAAGGAGTATATCCATGG+TGG | + | chr7.4:3869537-3869556 | MS.gene054438:CDS | 45.0% |
| ! | TATCCATGGTGGAGGATTCA+AGG | + | chr7.4:3869548-3869567 | MS.gene054438:CDS | 45.0% |
| ! | TCTCATCAACATGCTTGGTG+TGG | + | chr7.4:3868435-3868454 | MS.gene054438:CDS | 45.0% |
| AGAGTTCAGGAAAGCCGTGA+AGG | - | chr7.4:3868270-3868289 | None:intergenic | 50.0% | |
| ATACTCCTTCACATGTGGCG+AGG | - | chr7.4:3869529-3869548 | None:intergenic | 50.0% | |
| CCAGTTCCAAACTCTCCCTT+GGG | - | chr7.4:3869161-3869180 | None:intergenic | 50.0% | |
| CCCACAGTGAAGCCTATTGA+TGG | + | chr7.4:3868577-3868596 | MS.gene054438:CDS | 50.0% | |
| CTCACGCTTCTATGGTGTGT+TGG | + | chr7.4:3868733-3868752 | MS.gene054438:intron | 50.0% | |
| CTTCCTTGAATCCTCCACCA+TGG | - | chr7.4:3869554-3869573 | None:intergenic | 50.0% | |
| GAAGCTGAGATAGCTCAGGT+TGG | + | chr7.4:3869077-3869096 | MS.gene054438:CDS | 50.0% | |
| GGAAGATGTGCCGAATTTGG+AGG | + | chr7.4:3869569-3869588 | MS.gene054438:CDS | 50.0% | |
| GGTCCTCCAATACTTCCCAA+GGG | + | chr7.4:3869143-3869162 | MS.gene054438:CDS | 50.0% | |
| GTCCTCACAACTCGCAAAAC+TGG | + | chr7.4:3869122-3869141 | MS.gene054438:CDS | 50.0% | |
| TCCAGTTCCAAACTCTCCCT+TGG | - | chr7.4:3869162-3869181 | None:intergenic | 50.0% | |
| TGGTCCTCCAATACTTCCCA+AGG | + | chr7.4:3869142-3869161 | MS.gene054438:CDS | 50.0% | |
| TTCACGGCTTTCCTGAACTC+TGG | + | chr7.4:3868269-3868288 | MS.gene054438:CDS | 50.0% | |
| ! | GAAGATCTGGAGCAACAGCA+CGG | - | chr7.4:3868339-3868358 | None:intergenic | 50.0% |
| ! | GACCAGTTTTGCGAGTTGTG+AGG | - | chr7.4:3869127-3869146 | None:intergenic | 50.0% |
| !! | TCTCCCTTGGGAAGTATTGG+AGG | - | chr7.4:3869149-3869168 | None:intergenic | 50.0% |
| ATTGCTGCTCTCGGCTCTCT+CGG | + | chr7.4:3868310-3868329 | MS.gene054438:CDS | 55.0% | |
| ATTGGGAGCTCACAGCACCA+TGG | + | chr7.4:3869442-3869461 | MS.gene054438:CDS | 55.0% | |
| GCAGCACGCCTACCATCAAT+AGG | - | chr7.4:3868592-3868611 | None:intergenic | 55.0% | |
| GCGTAGCTGCTAATCGAAGC+CGG | - | chr7.4:3868385-3868404 | None:intergenic | 55.0% | |
| GCTAATCGAAGCCGGAGCAT+CGG | - | chr7.4:3868377-3868396 | None:intergenic | 55.0% | |
| GCTCCAGATCTTCGTGGCTA+CGG | + | chr7.4:3868346-3868365 | MS.gene054438:CDS | 55.0% | |
| GCTGTTGCTCCAGATCTTCG+TGG | + | chr7.4:3868340-3868359 | MS.gene054438:CDS | 55.0% | |
| GTACACCTCGCCACATGTGA+AGG | + | chr7.4:3869521-3869540 | MS.gene054438:CDS | 55.0% | |
| TCACCGTAGCCACGAAGATC+TGG | - | chr7.4:3868352-3868371 | None:intergenic | 55.0% | |
| TTCTGTGAGCCAAGTGGGCA+AGG | - | chr7.4:3869207-3869226 | None:intergenic | 55.0% | |
| ! | CCCAAGGGAGAGTTTGGAAC+TGG | + | chr7.4:3869158-3869177 | MS.gene054438:CDS | 55.0% |
| ! | GAGAAAACTGGCTTCACCGG+AGG | + | chr7.4:3869257-3869276 | MS.gene054438:CDS | 55.0% |
| !! | CGCCAAGAGTACCAGAGTTC+AGG | - | chr7.4:3868283-3868302 | None:intergenic | 55.0% |
| !! | GATGGTAGGCGTGCTGCTTA+TGG | + | chr7.4:3868595-3868614 | MS.gene054438:CDS | 55.0% |
| AGCCGAGAGCAGCAATCTGG+TGG | - | chr7.4:3868306-3868325 | None:intergenic | 60.0% | |
| CGCCACCAGATTGCTGCTCT+CGG | + | chr7.4:3868301-3868320 | MS.gene054438:CDS | 60.0% | |
| CTACGGTGACACCGATGCTC+CGG | + | chr7.4:3868363-3868382 | MS.gene054438:CDS | 60.0% | |
| GAGAGCCGAGAGCAGCAATC+TGG | - | chr7.4:3868309-3868328 | None:intergenic | 60.0% | |
| GAGCTCACAGCACCATGGAG+TGG | + | chr7.4:3869447-3869466 | MS.gene054438:CDS | 60.0% | |
| ! | AGCCAAGTGGGCAAGGTGTC+AGG | - | chr7.4:3869200-3869219 | None:intergenic | 60.0% |
| ! | CCAAGTGGGCAAGGTGTCAG+GGG | - | chr7.4:3869198-3869217 | None:intergenic | 60.0% |
| ! | GCCAAGTGGGCAAGGTGTCA+GGG | - | chr7.4:3869199-3869218 | None:intergenic | 60.0% |
| !! | GGCAAGGTGTCAGGGGTATC+CGG | - | chr7.4:3869191-3869210 | None:intergenic | 60.0% |
| CCCCTGACACCTTGCCCACT+TGG | + | chr7.4:3869195-3869214 | MS.gene054438:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 3868178 | 3869686 | 3868178 | ID=MS.gene054438 |
| chr7.4 | mRNA | 3868178 | 3869686 | 3868178 | ID=MS.gene054438.t1;Parent=MS.gene054438 |
| chr7.4 | exon | 3868178 | 3868645 | 3868178 | ID=MS.gene054438.t1.exon1;Parent=MS.gene054438.t1 |
| chr7.4 | CDS | 3868178 | 3868645 | 3868178 | ID=cds.MS.gene054438.t1;Parent=MS.gene054438.t1 |
| chr7.4 | exon | 3869062 | 3869306 | 3869062 | ID=MS.gene054438.t1.exon2;Parent=MS.gene054438.t1 |
| chr7.4 | CDS | 3869062 | 3869306 | 3869062 | ID=cds.MS.gene054438.t1;Parent=MS.gene054438.t1 |
| chr7.4 | exon | 3869440 | 3869686 | 3869440 | ID=MS.gene054438.t1.exon3;Parent=MS.gene054438.t1 |
| chr7.4 | CDS | 3869440 | 3869686 | 3869440 | ID=cds.MS.gene054438.t1;Parent=MS.gene054438.t1 |
| Gene Sequence |
| Protein sequence |
