Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054440.t1 | XP_003626241.1 | 97.2 | 316 | 9 | 0 | 1 | 316 | 1 | 316 | 3.00E-180 | 641 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054440.t1 | I6YGS0 | 39.1 | 320 | 172 | 10 | 7 | 313 | 7 | 316 | 7.2e-58 | 225.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054440.t1 | G7KXM0 | 97.2 | 316 | 9 | 0 | 1 | 316 | 1 | 316 | 2.2e-180 | 641.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene054440 | MS.gene22955 | PPI |
| MS.gene054440 | MS.gene071500 | PPI |
| MS.gene054440 | MS.gene041604 | PPI |
| MS.gene054440 | MS.gene77823 | PPI |
| MS.gene054440 | MS.gene025707 | PPI |
| MS.gene054440 | MS.gene89620 | PPI |
| MS.gene054440 | MS.gene012063 | PPI |
| MS.gene054440 | MS.gene066360 | PPI |
| MS.gene054440 | MS.gene035367 | PPI |
| MS.gene054440 | MS.gene035369 | PPI |
| MS.gene054440 | MS.gene76453 | PPI |
| MS.gene054440 | MS.gene035373 | PPI |
| MS.gene054440 | MS.gene07001 | PPI |
| MS.gene054440 | MS.gene066361 | PPI |
| MS.gene054440 | MS.gene035371 | PPI |
| MS.gene054440 | MS.gene071502 | PPI |
| MS.gene054440 | MS.gene071504 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054440.t1 | MTR_7g112970 | 97.152 | 316 | 9 | 0 | 1 | 316 | 1 | 316 | 0.0 | 640 |
| MS.gene054440.t1 | MTR_7g112960 | 86.520 | 319 | 40 | 1 | 1 | 316 | 1 | 319 | 0.0 | 577 |
| MS.gene054440.t1 | MTR_7g112963 | 86.834 | 319 | 39 | 1 | 1 | 316 | 1 | 319 | 0.0 | 574 |
| MS.gene054440.t1 | MTR_7g113020 | 77.429 | 319 | 69 | 2 | 1 | 316 | 1 | 319 | 0.0 | 522 |
| MS.gene054440.t1 | MTR_7g113010 | 87.189 | 281 | 33 | 1 | 1 | 278 | 1 | 281 | 0.0 | 517 |
| MS.gene054440.t1 | MTR_7g113030 | 76.489 | 319 | 72 | 1 | 1 | 316 | 1 | 319 | 0.0 | 513 |
| MS.gene054440.t1 | MTR_7g113050 | 76.489 | 319 | 72 | 2 | 1 | 316 | 1 | 319 | 0.0 | 511 |
| MS.gene054440.t1 | MTR_7g112615 | 76.176 | 319 | 73 | 2 | 1 | 316 | 1 | 319 | 0.0 | 509 |
| MS.gene054440.t1 | MTR_7g112620 | 74.922 | 319 | 77 | 2 | 1 | 316 | 1 | 319 | 0.0 | 504 |
| MS.gene054440.t1 | MTR_4g005160 | 67.492 | 323 | 97 | 5 | 1 | 316 | 1 | 322 | 2.62e-161 | 452 |
| MS.gene054440.t1 | MTR_4g120240 | 61.875 | 320 | 117 | 3 | 1 | 316 | 37 | 355 | 2.61e-148 | 421 |
| MS.gene054440.t1 | MTR_7g108825 | 63.522 | 318 | 113 | 3 | 1 | 316 | 1 | 317 | 4.96e-145 | 411 |
| MS.gene054440.t1 | MTR_7g113050 | 76.471 | 238 | 53 | 2 | 1 | 235 | 1 | 238 | 1.04e-133 | 379 |
| MS.gene054440.t1 | MTR_7g112615 | 76.471 | 238 | 53 | 2 | 1 | 235 | 1 | 238 | 1.53e-133 | 379 |
| MS.gene054440.t1 | MTR_8g076680 | 47.812 | 320 | 158 | 5 | 1 | 316 | 3 | 317 | 1.09e-105 | 311 |
| MS.gene054440.t1 | MTR_7g108825 | 62.447 | 237 | 86 | 3 | 1 | 235 | 1 | 236 | 1.41e-101 | 298 |
| MS.gene054440.t1 | MTR_7g112615 | 85.535 | 159 | 23 | 0 | 1 | 159 | 1 | 159 | 1.43e-101 | 296 |
| MS.gene054440.t1 | MTR_1g083480 | 76.730 | 159 | 33 | 2 | 1 | 156 | 1 | 158 | 2.38e-88 | 262 |
| MS.gene054440.t1 | MTR_8g076680 | 47.699 | 239 | 118 | 3 | 1 | 235 | 3 | 238 | 1.36e-79 | 242 |
| MS.gene054440.t1 | MTR_4g089060 | 37.188 | 320 | 185 | 7 | 1 | 315 | 1 | 309 | 7.64e-67 | 212 |
| MS.gene054440.t1 | MTR_2g090240 | 36.562 | 320 | 188 | 7 | 1 | 315 | 1 | 310 | 2.12e-66 | 211 |
| MS.gene054440.t1 | MTR_2g090245 | 36.875 | 320 | 187 | 8 | 1 | 315 | 1 | 310 | 9.08e-66 | 209 |
| MS.gene054440.t1 | MTR_7g112910 | 47.791 | 249 | 72 | 7 | 72 | 316 | 1 | 195 | 1.53e-65 | 204 |
| MS.gene054440.t1 | MTR_4g089040 | 36.562 | 320 | 187 | 7 | 1 | 315 | 1 | 309 | 7.82e-65 | 207 |
| MS.gene054440.t1 | MTR_4g089060 | 34.582 | 347 | 184 | 8 | 1 | 315 | 1 | 336 | 1.15e-61 | 199 |
| MS.gene054440.t1 | MTR_3g024250 | 79.439 | 107 | 22 | 0 | 46 | 152 | 1 | 107 | 8.20e-57 | 180 |
| MS.gene054440.t1 | MTR_4g089060 | 39.224 | 232 | 131 | 4 | 1 | 228 | 1 | 226 | 5.04e-55 | 179 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054440.t1 | AT3G05600 | 63.272 | 324 | 111 | 4 | 1 | 316 | 1 | 324 | 2.28e-153 | 433 |
| MS.gene054440.t1 | AT4G02340 | 60.252 | 317 | 124 | 2 | 1 | 316 | 1 | 316 | 1.08e-144 | 410 |
| MS.gene054440.t1 | AT4G15960 | 54.938 | 324 | 138 | 3 | 1 | 316 | 51 | 374 | 1.06e-132 | 382 |
| MS.gene054440.t1 | AT2G26740 | 60.125 | 321 | 120 | 4 | 4 | 316 | 1 | 321 | 2.93e-131 | 376 |
| MS.gene054440.t1 | AT2G26750 | 58.125 | 320 | 127 | 4 | 4 | 316 | 1 | 320 | 2.96e-126 | 363 |
| MS.gene054440.t1 | AT3G05600 | 65.432 | 243 | 76 | 4 | 1 | 235 | 1 | 243 | 2.33e-114 | 330 |
| MS.gene054440.t1 | AT4G15955 | 51.863 | 322 | 122 | 5 | 5 | 316 | 6 | 304 | 7.23e-113 | 329 |
| MS.gene054440.t1 | AT3G51000 | 50.470 | 319 | 148 | 6 | 4 | 316 | 5 | 319 | 4.23e-108 | 318 |
| MS.gene054440.t1 | AT4G15955 | 61.850 | 173 | 56 | 2 | 5 | 167 | 6 | 178 | 6.97e-75 | 228 |
| MS.gene054440.t1 | AT4G15955 | 59.538 | 173 | 60 | 2 | 5 | 167 | 6 | 178 | 3.33e-71 | 218 |
Find 91 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAACAACTTCCTCCAAATT+TGG | 0.197478 | 7.4:-3936054 | None:intergenic |
| CCATCAACAGGTTTCACTTT+TGG | 0.201205 | 7.4:-3934620 | None:intergenic |
| ACATAGGCTTTAACTCTTTC+AGG | 0.203556 | 7.4:-3934566 | None:intergenic |
| CAAGAAAGATGTGCCAAATT+TGG | 0.205231 | 7.4:+3936041 | MS.gene054440:CDS |
| CTCTCAGCTCCCTTGGTTAC+CGG | 0.222064 | 7.4:+3934360 | MS.gene054440:CDS |
| CCTCCCTTCTTGGCTCTTGC+AGG | 0.234406 | 7.4:+3935414 | MS.gene054440:CDS |
| TGATATCCTCAGCAGCTTCT+TGG | 0.242215 | 7.4:-3936104 | None:intergenic |
| GATGGCATGCGAGCCTTATT+TGG | 0.268655 | 7.4:+3934638 | MS.gene054440:CDS |
| CTTCCTTGTGGCTCATGATT+GGG | 0.281967 | 7.4:+3934508 | MS.gene054440:CDS |
| TCTTCCTTGTGGCTCATGAT+TGG | 0.288857 | 7.4:+3934507 | MS.gene054440:CDS |
| AAAACAGGAACTAGGGAAAA+TGG | 0.297439 | 7.4:+3935273 | MS.gene054440:intron |
| GTACAAAGCCCCTCCCTTCT+TGG | 0.301476 | 7.4:+3935404 | MS.gene054440:CDS |
| TCACCAGTTATGAACTTTAC+TGG | 0.310577 | 7.4:-3935961 | None:intergenic |
| AACCTGTTCTGGGCTATCTT+TGG | 0.320528 | 7.4:-3935308 | None:intergenic |
| CGCCATGAATACCAGAGTTC+GGG | 0.321570 | 7.4:-3934323 | None:intergenic |
| ATAATAGTCATCTCCAAATA+AGG | 0.326858 | 7.4:-3934651 | None:intergenic |
| GATTTAGTTTACGCTTCTTC+TGG | 0.328378 | 7.4:+3935988 | MS.gene054440:CDS |
| GCTCCAGATCTTCGTGGTTA+TGG | 0.348958 | 7.4:+3934389 | MS.gene054440:CDS |
| ATGCTCTTGATAACCTGTTC+TGG | 0.358215 | 7.4:-3935319 | None:intergenic |
| CTATTATATCTGCAGATTCC+AGG | 0.362815 | 7.4:+3934667 | MS.gene054440:CDS |
| TGTATAACTGCTTACCGAAC+TGG | 0.368608 | 7.4:-3934426 | None:intergenic |
| TTTGAAAAGACTGGATTTAG+TGG | 0.371587 | 7.4:+3935463 | MS.gene054440:CDS |
| CATGATTGGGGTGCCATCAT+TGG | 0.372270 | 7.4:+3934521 | MS.gene054440:CDS |
| GCTTCTAAATTTGAAAAGAC+TGG | 0.372902 | 7.4:+3935454 | MS.gene054440:CDS |
| GTTATCAAGAGCATGCTTAC+AGG | 0.380993 | 7.4:+3935328 | MS.gene054440:CDS |
| TGAGATTTCTGTAGAAGTTA+AGG | 0.381104 | 7.4:-3935489 | None:intergenic |
| GAAGGGAGGGGCTTTGTACT+TGG | 0.389547 | 7.4:-3935400 | None:intergenic |
| TCCCCGAACTCTGGTATTCA+TGG | 0.400658 | 7.4:+3934321 | MS.gene054440:CDS |
| CGTTCTTTGGGTAAGATTAG+TGG | 0.401266 | 7.4:-3935364 | None:intergenic |
| TTTGGAGGAAGTTGTTATAC+AGG | 0.404163 | 7.4:+3936059 | MS.gene054440:CDS |
| GAGCTCACGGCAGCATGGAC+TGG | 0.405747 | 7.4:+3935922 | MS.gene054440:CDS |
| GTGCCAGTAAAGTTCATAAC+TGG | 0.409298 | 7.4:+3935958 | MS.gene054440:CDS |
| CATAGGCTTTAACTCTTTCA+GGG | 0.412776 | 7.4:-3934565 | None:intergenic |
| TTTGGGTTTCTGGGTAAATA+CGG | 0.420169 | 7.4:-3934602 | None:intergenic |
| CCAAAAGTGAAACCTGTTGA+TGG | 0.426814 | 7.4:+3934620 | MS.gene054440:CDS |
| AGTTTATGTTCATAGAAATT+GGG | 0.428721 | 7.4:+3935900 | MS.gene054440:intron |
| CAATCTATAAAACAGGAACT+AGG | 0.434696 | 7.4:+3935265 | MS.gene054440:intron |
| ATTGTTGCTCTCAGCTCCCT+TGG | 0.441960 | 7.4:+3934353 | MS.gene054440:CDS |
| GCGCCATGAATACCAGAGTT+CGG | 0.442920 | 7.4:-3934324 | None:intergenic |
| TCACCATAACCACGAAGATC+TGG | 0.444429 | 7.4:-3934392 | None:intergenic |
| TCTCAGCTCCCTTGGTTACC+GGG | 0.447833 | 7.4:+3934361 | MS.gene054440:CDS |
| CCGTGAAGGAACAAAACAAC+TGG | 0.460486 | 7.4:-3934296 | None:intergenic |
| TGCCAAAGATAGCCCAGAAC+AGG | 0.465178 | 7.4:+3935306 | MS.gene054440:CDS |
| AAGGCTCGCATGCCATCAAC+AGG | 0.466113 | 7.4:-3934632 | None:intergenic |
| GAAGATCTGGAGCGACCGCC+CGG | 0.473356 | 7.4:-3934379 | None:intergenic |
| ATGCTTACAGGTCGGACTAC+TGG | 0.478167 | 7.4:+3935340 | MS.gene054440:CDS |
| GGGAGCTGAGAGCAACAATC+TGG | 0.483314 | 7.4:-3934349 | None:intergenic |
| TATACAATCTTCCACTTGGT+TGG | 0.484085 | 7.4:+3934443 | MS.gene054440:CDS |
| AAAATGCATATTGCTGAGAA+AGG | 0.485302 | 7.4:+3934263 | MS.gene054440:CDS |
| TTCCTTGTGGCTCATGATTG+GGG | 0.491817 | 7.4:+3934509 | MS.gene054440:CDS |
| TTCACGGCTTCCCCGAACTC+TGG | 0.493835 | 7.4:+3934312 | MS.gene054440:CDS |
| TGCTCTTGATAACCTGTTCT+GGG | 0.497008 | 7.4:-3935318 | None:intergenic |
| GTATAACTGCTTACCGAACT+GGG | 0.514137 | 7.4:-3934425 | None:intergenic |
| AATCTATAAAACAGGAACTA+GGG | 0.516720 | 7.4:+3935266 | MS.gene054440:intron |
| TCTTCCTGCAAGAGCCAAGA+AGG | 0.517005 | 7.4:-3935418 | None:intergenic |
| GAAAGATGTGCCAAATTTGG+AGG | 0.528499 | 7.4:+3936044 | MS.gene054440:CDS |
| CTGCAAGAGCCAAGAAGGGA+GGG | 0.531189 | 7.4:-3935413 | None:intergenic |
| GCAAAGATACCAACCAATGA+TGG | 0.533895 | 7.4:-3934534 | None:intergenic |
| ACCACTCTCGATGTATTGCT+TGG | 0.548140 | 7.4:-3936013 | None:intergenic |
| TGACAGTGATGTCCCCAGTT+CGG | 0.550532 | 7.4:+3934412 | MS.gene054440:CDS |
| CAGTTATACAATCTTCCACT+TGG | 0.551753 | 7.4:+3934439 | MS.gene054440:CDS |
| GTTGCTCTCATCGACTCACT+TGG | 0.552314 | 7.4:+3934473 | MS.gene054440:CDS |
| GAGCGACCGCCCGGTAACCA+AGG | 0.552403 | 7.4:-3934370 | None:intergenic |
| GAGGAAGTTGTTATACAGGA+AGG | 0.556694 | 7.4:+3936063 | MS.gene054440:CDS |
| ATTGCTGAGAAAGGAAAAGA+AGG | 0.557400 | 7.4:+3934272 | MS.gene054440:CDS |
| CACAGAACAGTGGAAGTGAA+TGG | 0.567993 | 7.4:+3934236 | MS.gene054440:CDS |
| CGGAACACTCAGACACACAT+AGG | 0.568178 | 7.4:-3934582 | None:intergenic |
| ATTGGGGTGCCATCATTGGT+TGG | 0.574625 | 7.4:+3934525 | MS.gene054440:CDS |
| TGCAAGAGCCAAGAAGGGAG+GGG | 0.579693 | 7.4:-3935412 | None:intergenic |
| GAAAAGACTGGATTTAGTGG+TGG | 0.588504 | 7.4:+3935466 | MS.gene054440:CDS |
| AGAGTTCGGGGAAGCCGTGA+AGG | 0.588682 | 7.4:-3934310 | None:intergenic |
| GCGGTCGCTCCAGATCTTCG+TGG | 0.594935 | 7.4:+3934383 | MS.gene054440:CDS |
| TCATAGAAATTGGGAGCTCA+CGG | 0.607116 | 7.4:+3935909 | MS.gene054440:intron |
| ATTGGGAGCTCACGGCAGCA+TGG | 0.608978 | 7.4:+3935917 | MS.gene054440:CDS |
| AGCGACCGCCCGGTAACCAA+GGG | 0.609778 | 7.4:-3934369 | None:intergenic |
| CAACAACCAAGAAGCTGCTG+AGG | 0.614308 | 7.4:+3936098 | MS.gene054440:CDS |
| CACCCCAATCATGAGCCACA+AGG | 0.623498 | 7.4:-3934511 | None:intergenic |
| CCTGCAAGAGCCAAGAAGGG+AGG | 0.624132 | 7.4:-3935414 | None:intergenic |
| AGCTGAGAGCAACAATCTGG+TGG | 0.629150 | 7.4:-3934346 | None:intergenic |
| CAACGATGTCACCAACCAAG+TGG | 0.634014 | 7.4:-3934454 | None:intergenic |
| AGTTGTTATACAGGAAGGTG+TGG | 0.637871 | 7.4:+3936068 | MS.gene054440:CDS |
| CTTCCTGCAAGAGCCAAGAA+GGG | 0.643409 | 7.4:-3935417 | None:intergenic |
| AACACCAAAGAAGAGATGGA+AGG | 0.649645 | 7.4:+3934206 | None:intergenic |
| ACCAAGCAATACATCGAGAG+TGG | 0.651403 | 7.4:+3936012 | MS.gene054440:CDS |
| TCAAGAGCATGCTTACAGGT+CGG | 0.653704 | 7.4:+3935332 | MS.gene054440:CDS |
| TGTTGATCAAGTCTTCCTTG+TGG | 0.670046 | 7.4:+3934496 | MS.gene054440:CDS |
| AAGCAATACATCGAGAGTGG+TGG | 0.673299 | 7.4:+3936015 | MS.gene054440:CDS |
| AGGAATAGAACACAGAACAG+TGG | 0.676997 | 7.4:+3934226 | MS.gene054440:CDS |
| TATAACTGCTTACCGAACTG+GGG | 0.680481 | 7.4:-3934424 | None:intergenic |
| GCCATGAATACCAGAGTTCG+GGG | 0.700987 | 7.4:-3934322 | None:intergenic |
| CAGCTCCCTTGGTTACCGGG+CGG | 0.757325 | 7.4:+3934364 | MS.gene054440:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAATAATAGATTATATTAA+TGG | - | chr7.4:3935193-3935212 | None:intergenic | 10.0% |
| !! | AATAGATTATATTAATGGAA+TGG | - | chr7.4:3935188-3935207 | None:intergenic | 15.0% |
| !! | ATCATGTATTTCAAATAAAT+GGG | - | chr7.4:3934901-3934920 | None:intergenic | 15.0% |
| !! | ATCTTAACAGATTATTTAAA+TGG | + | chr7.4:3934769-3934788 | MS.gene054440:intron | 15.0% |
| !! | ATTCAAATTCAAAAAATTTG+AGG | + | chr7.4:3935694-3935713 | MS.gene054440:intron | 15.0% |
| !! | TAAATTATTCATATCCATAT+TGG | - | chr7.4:3935809-3935828 | None:intergenic | 15.0% |
| !! | TATCATGTATTTCAAATAAA+TGG | - | chr7.4:3934902-3934921 | None:intergenic | 15.0% |
| !! | TTTGATAAATAAATAAAGTG+TGG | + | chr7.4:3934812-3934831 | MS.gene054440:intron | 15.0% |
| !!! | TTTTAACTTGATTAAGTAAA+TGG | + | chr7.4:3934956-3934975 | MS.gene054440:intron | 15.0% |
| !! | AAAAATGGCAAGAAAAAATA+AGG | - | chr7.4:3935525-3935544 | None:intergenic | 20.0% |
| !! | AAAATATAAGAATTCAAACC+TGG | - | chr7.4:3934688-3934707 | None:intergenic | 20.0% |
| !! | AGTTTATGTTCATAGAAATT+GGG | + | chr7.4:3935900-3935919 | MS.gene054440:intron | 20.0% |
| !! | TAACAGATTATTTAAATGGA+TGG | + | chr7.4:3934773-3934792 | MS.gene054440:intron | 20.0% |
| !! | TCATGTATTTCAAATAAATG+GGG | - | chr7.4:3934900-3934919 | None:intergenic | 20.0% |
| !! | TTATCTCATATGTTAATCAT+AGG | + | chr7.4:3935132-3935151 | MS.gene054440:intron | 20.0% |
| !!! | ATGAGATAACCTTTTTTTTT+AGG | - | chr7.4:3935121-3935140 | None:intergenic | 20.0% |
| !!! | CAAAAAATTTGAGGTTTTTA+TGG | + | chr7.4:3935703-3935722 | MS.gene054440:intron | 20.0% |
| !!! | TATTTCTATTTGATCCAATA+TGG | + | chr7.4:3935792-3935811 | MS.gene054440:intron | 20.0% |
| !!! | TGAGATAACCTTTTTTTTTA+GGG | - | chr7.4:3935120-3935139 | None:intergenic | 20.0% |
| ! | AAATCAGTTGAATAAGATGA+GGG | - | chr7.4:3935633-3935652 | None:intergenic | 25.0% |
| ! | AATCTATAAAACAGGAACTA+GGG | + | chr7.4:3935266-3935285 | MS.gene054440:intron | 25.0% |
| ! | ATAATAGTCATCTCCAAATA+AGG | - | chr7.4:3934654-3934673 | None:intergenic | 25.0% |
| ! | ATATGTTCCCCTAAAAAAAA+AGG | + | chr7.4:3935109-3935128 | MS.gene054440:intron | 25.0% |
| ! | CAAATAGAAATATAAGTGCA+AGG | - | chr7.4:3935784-3935803 | None:intergenic | 25.0% |
| ! | GAGTTTATGTTCATAGAAAT+TGG | + | chr7.4:3935899-3935918 | MS.gene054440:intron | 25.0% |
| ! | GTATAACAAATTAGTTACAG+AGG | - | chr7.4:3935663-3935682 | None:intergenic | 25.0% |
| !!! | GAGATAACCTTTTTTTTTAG+GGG | - | chr7.4:3935119-3935138 | None:intergenic | 25.0% |
| AAAATGCATATTGCTGAGAA+AGG | + | chr7.4:3934263-3934282 | MS.gene054440:CDS | 30.0% | |
| ACTTTAGGCCTTAGAATATT+GGG | - | chr7.4:3935730-3935749 | None:intergenic | 30.0% | |
| ATAACAACTTCCTCCAAATT+TGG | - | chr7.4:3936057-3936076 | None:intergenic | 30.0% | |
| ATTAACTAAATGTCTCGTGT+CGG | + | chr7.4:3935549-3935568 | MS.gene054440:intron | 30.0% | |
| CAAATCAGTTGAATAAGATG+AGG | - | chr7.4:3935634-3935653 | None:intergenic | 30.0% | |
| CAATCTATAAAACAGGAACT+AGG | + | chr7.4:3935265-3935284 | MS.gene054440:intron | 30.0% | |
| CTCATCTTATTCAACTGATT+TGG | + | chr7.4:3935632-3935651 | MS.gene054440:intron | 30.0% | |
| GCTTCTAAATTTGAAAAGAC+TGG | + | chr7.4:3935454-3935473 | MS.gene054440:CDS | 30.0% | |
| GGTACTAGAAAATACTACTT+TGG | - | chr7.4:3934852-3934871 | None:intergenic | 30.0% | |
| TACACAATTGTAATATCCGA+AGG | - | chr7.4:3935846-3935865 | None:intergenic | 30.0% | |
| TGAGATTTCTGTAGAAGTTA+AGG | - | chr7.4:3935492-3935511 | None:intergenic | 30.0% | |
| TTTGAAAAGACTGGATTTAG+TGG | + | chr7.4:3935463-3935482 | MS.gene054440:CDS | 30.0% | |
| ! | CTAGTTCCTGTTTTATAGAT+TGG | - | chr7.4:3935267-3935286 | None:intergenic | 30.0% |
| ! | TAATTGTGCTTTTAGTCCTT+CGG | + | chr7.4:3935827-3935846 | MS.gene054440:intron | 30.0% |
| !! | ATGAGATAAAAAGCGTTCTT+TGG | - | chr7.4:3935380-3935399 | None:intergenic | 30.0% |
| !! | TGAGATAAAAAGCGTTCTTT+GGG | - | chr7.4:3935379-3935398 | None:intergenic | 30.0% |
| AAAACAGGAACTAGGGAAAA+TGG | + | chr7.4:3935273-3935292 | MS.gene054440:intron | 35.0% | |
| AAGTGAGCAAGAAGAGTAAA+GGG | - | chr7.4:3934733-3934752 | None:intergenic | 35.0% | |
| ACAGTCTAAGCTAAGACTTT+AGG | - | chr7.4:3935745-3935764 | None:intergenic | 35.0% | |
| ATTGCTGAGAAAGGAAAAGA+AGG | + | chr7.4:3934272-3934291 | MS.gene054440:CDS | 35.0% | |
| CAAGAAAGATGTGCCAAATT+TGG | + | chr7.4:3936041-3936060 | MS.gene054440:CDS | 35.0% | |
| CAGTTATACAATCTTCCACT+TGG | + | chr7.4:3934439-3934458 | MS.gene054440:CDS | 35.0% | |
| CCAACTCCAATCTATAAAAC+AGG | + | chr7.4:3935258-3935277 | MS.gene054440:intron | 35.0% | |
| CTATTATATCTGCAGATTCC+AGG | + | chr7.4:3934667-3934686 | MS.gene054440:CDS | 35.0% | |
| CTTTAGGCCTTAGAATATTG+GGG | - | chr7.4:3935729-3935748 | None:intergenic | 35.0% | |
| GACTTTAGGCCTTAGAATAT+TGG | - | chr7.4:3935731-3935750 | None:intergenic | 35.0% | |
| TATACAATCTTCCACTTGGT+TGG | + | chr7.4:3934443-3934462 | MS.gene054440:CDS | 35.0% | |
| TCACCAGTTATGAACTTTAC+TGG | - | chr7.4:3935964-3935983 | None:intergenic | 35.0% | |
| TTTATGGCCCCAATATTCTA+AGG | + | chr7.4:3935719-3935738 | MS.gene054440:intron | 35.0% | |
| TTTGGAGGAAGTTGTTATAC+AGG | + | chr7.4:3936059-3936078 | MS.gene054440:CDS | 35.0% | |
| ! | ACATAGGCTTTAACTCTTTC+AGG | - | chr7.4:3934569-3934588 | None:intergenic | 35.0% |
| ! | ATCAGTTGCTGTTGATCTAA+TGG | + | chr7.4:3935156-3935175 | MS.gene054440:intron | 35.0% |
| ! | CATAGGCTTTAACTCTTTCA+GGG | - | chr7.4:3934568-3934587 | None:intergenic | 35.0% |
| ! | CCTGTTTTATAGATTGGAGT+TGG | - | chr7.4:3935261-3935280 | None:intergenic | 35.0% |
| ! | GATTTAGTTTACGCTTCTTC+TGG | + | chr7.4:3935988-3936007 | MS.gene054440:CDS | 35.0% |
| ! | GTCATTTGAAACAAGAGTCT+GGG | + | chr7.4:3935068-3935087 | MS.gene054440:intron | 35.0% |
| ! | TACCAAACTCGTTTTCCTTA+CGG | + | chr7.4:3934868-3934887 | MS.gene054440:intron | 35.0% |
| ! | TGTCATTTGAAACAAGAGTC+TGG | + | chr7.4:3935067-3935086 | MS.gene054440:intron | 35.0% |
| ! | TTTGGGTTTCTGGGTAAATA+CGG | - | chr7.4:3934605-3934624 | None:intergenic | 35.0% |
| !! | CATCAACAGGTTTCACTTTT+GGG | - | chr7.4:3934622-3934641 | None:intergenic | 35.0% |
| ACCAACCATGTGTATGTATG+TGG | - | chr7.4:3935593-3935612 | None:intergenic | 40.0% | |
| AGAAATATAAGTGCAAGGCC+AGG | - | chr7.4:3935779-3935798 | None:intergenic | 40.0% | |
| AGGAATAGAACACAGAACAG+TGG | + | chr7.4:3934226-3934245 | MS.gene054440:CDS | 40.0% | |
| AGTTGTTATACAGGAAGGTG+TGG | + | chr7.4:3936068-3936087 | MS.gene054440:CDS | 40.0% | |
| ATGTGCCACATACATACACA+TGG | + | chr7.4:3935585-3935604 | MS.gene054440:intron | 40.0% | |
| CCAAAAGTGAAACCTGTTGA+TGG | + | chr7.4:3934620-3934639 | MS.gene054440:CDS | 40.0% | |
| CGTTCTTTGGGTAAGATTAG+TGG | - | chr7.4:3935367-3935386 | None:intergenic | 40.0% | |
| CTCTTCTTGCTCACTTCAAA+TGG | + | chr7.4:3934737-3934756 | MS.gene054440:intron | 40.0% | |
| GAAAAGACTGGATTTAGTGG+TGG | + | chr7.4:3935466-3935485 | MS.gene054440:CDS | 40.0% | |
| GAAAGATGTGCCAAATTTGG+AGG | + | chr7.4:3936044-3936063 | MS.gene054440:CDS | 40.0% | |
| GAAGTGAGCAAGAAGAGTAA+AGG | - | chr7.4:3934734-3934753 | None:intergenic | 40.0% | |
| GAGGAAGTTGTTATACAGGA+AGG | + | chr7.4:3936063-3936082 | MS.gene054440:CDS | 40.0% | |
| GCAAAGATACCAACCAATGA+TGG | - | chr7.4:3934537-3934556 | None:intergenic | 40.0% | |
| GTATAACTGCTTACCGAACT+GGG | - | chr7.4:3934428-3934447 | None:intergenic | 40.0% | |
| GTGCCAGTAAAGTTCATAAC+TGG | + | chr7.4:3935958-3935977 | MS.gene054440:CDS | 40.0% | |
| TATAACTGCTTACCGAACTG+GGG | - | chr7.4:3934427-3934446 | None:intergenic | 40.0% | |
| TCATAGAAATTGGGAGCTCA+CGG | + | chr7.4:3935909-3935928 | MS.gene054440:intron | 40.0% | |
| TGTATAACTGCTTACCGAAC+TGG | - | chr7.4:3934429-3934448 | None:intergenic | 40.0% | |
| TGTTGATCAAGTCTTCCTTG+TGG | + | chr7.4:3934496-3934515 | MS.gene054440:CDS | 40.0% | |
| ! | ATGCTCTTGATAACCTGTTC+TGG | - | chr7.4:3935322-3935341 | None:intergenic | 40.0% |
| ! | CCATCAACAGGTTTCACTTT+TGG | - | chr7.4:3934623-3934642 | None:intergenic | 40.0% |
| ! | GTTATCAAGAGCATGCTTAC+AGG | + | chr7.4:3935328-3935347 | MS.gene054440:CDS | 40.0% |
| ! | TGCTCTTGATAACCTGTTCT+GGG | - | chr7.4:3935321-3935340 | None:intergenic | 40.0% |
| ! | TTTGAAACAAGAGTCTGGGA+AGG | + | chr7.4:3935072-3935091 | MS.gene054440:intron | 40.0% |
| !! | CCAGTTGTTTTGTTCCTTCA+CGG | + | chr7.4:3934296-3934315 | MS.gene054440:CDS | 40.0% |
| !!! | AGGTTTCACTTTTGGGTTTC+TGG | - | chr7.4:3934615-3934634 | None:intergenic | 40.0% |
| !!! | GGTTTCACTTTTGGGTTTCT+GGG | - | chr7.4:3934614-3934633 | None:intergenic | 40.0% |
| AAGCAATACATCGAGAGTGG+TGG | + | chr7.4:3936015-3936034 | MS.gene054440:CDS | 45.0% | |
| ACCAAGCAATACATCGAGAG+TGG | + | chr7.4:3936012-3936031 | MS.gene054440:CDS | 45.0% | |
| ACCACTCTCGATGTATTGCT+TGG | - | chr7.4:3936016-3936035 | None:intergenic | 45.0% | |
| AGCCGTAAGGAAAACGAGTT+TGG | - | chr7.4:3934873-3934892 | None:intergenic | 45.0% | |
| CACAGAACAGTGGAAGTGAA+TGG | + | chr7.4:3934236-3934255 | MS.gene054440:CDS | 45.0% | |
| CCGTGAAGGAACAAAACAAC+TGG | - | chr7.4:3934299-3934318 | None:intergenic | 45.0% | |
| CTTCCTTGTGGCTCATGATT+GGG | + | chr7.4:3934508-3934527 | MS.gene054440:CDS | 45.0% | |
| GCCACATACATACACATGGT+TGG | + | chr7.4:3935589-3935608 | MS.gene054440:intron | 45.0% | |
| TAAATGGGGAAAGAGCCGTA+AGG | - | chr7.4:3934886-3934905 | None:intergenic | 45.0% | |
| TCACCATAACCACGAAGATC+TGG | - | chr7.4:3934395-3934414 | None:intergenic | 45.0% | |
| TCTTCCTTGTGGCTCATGAT+TGG | + | chr7.4:3934507-3934526 | MS.gene054440:CDS | 45.0% | |
| TGATATCCTCAGCAGCTTCT+TGG | - | chr7.4:3936107-3936126 | None:intergenic | 45.0% | |
| TTCCTTGTGGCTCATGATTG+GGG | + | chr7.4:3934509-3934528 | MS.gene054440:CDS | 45.0% | |
| ! | AACCTGTTCTGGGCTATCTT+TGG | - | chr7.4:3935311-3935330 | None:intergenic | 45.0% |
| ! | ACATACACATGGTTGGTCGA+AGG | + | chr7.4:3935596-3935615 | MS.gene054440:intron | 45.0% |
| ! | TCAAGAGCATGCTTACAGGT+CGG | + | chr7.4:3935332-3935351 | MS.gene054440:CDS | 45.0% |
| !!! | ATTTAGTTAATTTTAAAAAA+TGG | - | chr7.4:3935540-3935559 | None:intergenic | 5.0% |
| AGACTGTCTAACCCTTAGCC+TGG | + | chr7.4:3935758-3935777 | MS.gene054440:intron | 50.0% | |
| AGCTGAGAGCAACAATCTGG+TGG | - | chr7.4:3934349-3934368 | None:intergenic | 50.0% | |
| ATAAGTGCAAGGCCAGGCTA+AGG | - | chr7.4:3935773-3935792 | None:intergenic | 50.0% | |
| ATGCTTACAGGTCGGACTAC+TGG | + | chr7.4:3935340-3935359 | MS.gene054440:CDS | 50.0% | |
| ATTGTTGCTCTCAGCTCCCT+TGG | + | chr7.4:3934353-3934372 | MS.gene054440:CDS | 50.0% | |
| CAACAACCAAGAAGCTGCTG+AGG | + | chr7.4:3936098-3936117 | MS.gene054440:CDS | 50.0% | |
| CAACGATGTCACCAACCAAG+TGG | - | chr7.4:3934457-3934476 | None:intergenic | 50.0% | |
| CGCCATGAATACCAGAGTTC+GGG | - | chr7.4:3934326-3934345 | None:intergenic | 50.0% | |
| CGGAACACTCAGACACACAT+AGG | - | chr7.4:3934585-3934604 | None:intergenic | 50.0% | |
| CTTCCTGCAAGAGCCAAGAA+GGG | - | chr7.4:3935420-3935439 | None:intergenic | 50.0% | |
| GCCATGAATACCAGAGTTCG+GGG | - | chr7.4:3934325-3934344 | None:intergenic | 50.0% | |
| GCGCCATGAATACCAGAGTT+CGG | - | chr7.4:3934327-3934346 | None:intergenic | 50.0% | |
| GCTCCAGATCTTCGTGGTTA+TGG | + | chr7.4:3934389-3934408 | MS.gene054440:CDS | 50.0% | |
| TAAGTGCAAGGCCAGGCTAA+GGG | - | chr7.4:3935772-3935791 | None:intergenic | 50.0% | |
| TCCCCGAACTCTGGTATTCA+TGG | + | chr7.4:3934321-3934340 | MS.gene054440:CDS | 50.0% | |
| TCTTCCTGCAAGAGCCAAGA+AGG | - | chr7.4:3935421-3935440 | None:intergenic | 50.0% | |
| TGACAGTGATGTCCCCAGTT+CGG | + | chr7.4:3934412-3934431 | MS.gene054440:CDS | 50.0% | |
| TGCCAAAGATAGCCCAGAAC+AGG | + | chr7.4:3935306-3935325 | MS.gene054440:CDS | 50.0% | |
| ! | ATTGGGGTGCCATCATTGGT+TGG | + | chr7.4:3934525-3934544 | MS.gene054440:CDS | 50.0% |
| ! | CATGATTGGGGTGCCATCAT+TGG | + | chr7.4:3934521-3934540 | MS.gene054440:CDS | 50.0% |
| !! | GATGGCATGCGAGCCTTATT+TGG | + | chr7.4:3934638-3934657 | MS.gene054440:CDS | 50.0% |
| !! | GTTGCTCTCATCGACTCACT+TGG | + | chr7.4:3934473-3934492 | MS.gene054440:CDS | 50.0% |
| AAGGCTCGCATGCCATCAAC+AGG | - | chr7.4:3934635-3934654 | None:intergenic | 55.0% | |
| CACCCCAATCATGAGCCACA+AGG | - | chr7.4:3934514-3934533 | None:intergenic | 55.0% | |
| CTCTCAGCTCCCTTGGTTAC+CGG | + | chr7.4:3934360-3934379 | MS.gene054440:CDS | 55.0% | |
| CTGCAAGAGCCAAGAAGGGA+GGG | - | chr7.4:3935416-3935435 | None:intergenic | 55.0% | |
| GGGAGCTGAGAGCAACAATC+TGG | - | chr7.4:3934352-3934371 | None:intergenic | 55.0% | |
| GTACAAAGCCCCTCCCTTCT+TGG | + | chr7.4:3935404-3935423 | MS.gene054440:CDS | 55.0% | |
| TCTCAGCTCCCTTGGTTACC+GGG | + | chr7.4:3934361-3934380 | MS.gene054440:CDS | 55.0% | |
| TGCAAGAGCCAAGAAGGGAG+GGG | - | chr7.4:3935415-3935434 | None:intergenic | 55.0% | |
| ! | GAAGGGAGGGGCTTTGTACT+TGG | - | chr7.4:3935403-3935422 | None:intergenic | 55.0% |
| AGAGTTCGGGGAAGCCGTGA+AGG | - | chr7.4:3934313-3934332 | None:intergenic | 60.0% | |
| ATTGGGAGCTCACGGCAGCA+TGG | + | chr7.4:3935917-3935936 | MS.gene054440:CDS | 60.0% | |
| CCTGCAAGAGCCAAGAAGGG+AGG | - | chr7.4:3935417-3935436 | None:intergenic | 60.0% | |
| TTCACGGCTTCCCCGAACTC+TGG | + | chr7.4:3934312-3934331 | MS.gene054440:CDS | 60.0% | |
| ! | CCTCCCTTCTTGGCTCTTGC+AGG | + | chr7.4:3935414-3935433 | MS.gene054440:CDS | 60.0% |
| AGCGACCGCCCGGTAACCAA+GGG | - | chr7.4:3934372-3934391 | None:intergenic | 65.0% | |
| CAGCTCCCTTGGTTACCGGG+CGG | + | chr7.4:3934364-3934383 | MS.gene054440:CDS | 65.0% | |
| GAGCTCACGGCAGCATGGAC+TGG | + | chr7.4:3935922-3935941 | MS.gene054440:CDS | 65.0% | |
| GCGGTCGCTCCAGATCTTCG+TGG | + | chr7.4:3934383-3934402 | MS.gene054440:CDS | 65.0% | |
| ! | GAAGATCTGGAGCGACCGCC+CGG | - | chr7.4:3934382-3934401 | None:intergenic | 65.0% |
| GAGCGACCGCCCGGTAACCA+AGG | - | chr7.4:3934373-3934392 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 3934221 | 3936161 | 3934221 | ID=MS.gene054440 |
| chr7.4 | mRNA | 3934221 | 3936161 | 3934221 | ID=MS.gene054440.t1;Parent=MS.gene054440 |
| chr7.4 | exon | 3934221 | 3934688 | 3934221 | ID=MS.gene054440.t1.exon1;Parent=MS.gene054440.t1 |
| chr7.4 | CDS | 3934221 | 3934688 | 3934221 | ID=cds.MS.gene054440.t1;Parent=MS.gene054440.t1 |
| chr7.4 | exon | 3935280 | 3935515 | 3935280 | ID=MS.gene054440.t1.exon2;Parent=MS.gene054440.t1 |
| chr7.4 | CDS | 3935280 | 3935515 | 3935280 | ID=cds.MS.gene054440.t1;Parent=MS.gene054440.t1 |
| chr7.4 | exon | 3935915 | 3936161 | 3935915 | ID=MS.gene054440.t1.exon3;Parent=MS.gene054440.t1 |
| chr7.4 | CDS | 3935915 | 3936161 | 3935915 | ID=cds.MS.gene054440.t1;Parent=MS.gene054440.t1 |
| Gene Sequence |
| Protein sequence |
