Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20919.t1 | XP_013469143.1 | 98.2 | 551 | 10 | 0 | 1 | 551 | 1 | 551 | 0.00E+00 | 1080.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20919.t1 | P55826 | 77.6 | 540 | 115 | 2 | 12 | 551 | 4 | 537 | 3.2e-239 | 828.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20919.t1 | A0A072VNG3 | 98.2 | 551 | 10 | 0 | 1 | 551 | 1 | 551 | 0.0e+00 | 1080.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049627 | MS.gene20919 | 0.803317 | 3.69E-49 | -1.69E-46 |
| MS.gene050163 | MS.gene20919 | 0.810574 | 1.08E-50 | -1.69E-46 |
| MS.gene050165 | MS.gene20919 | 0.839855 | 1.23E-57 | -1.69E-46 |
| MS.gene050333 | MS.gene20919 | 0.84535 | 4.29E-59 | -1.69E-46 |
| MS.gene050518 | MS.gene20919 | 0.801612 | 8.30E-49 | -1.69E-46 |
| MS.gene050612 | MS.gene20919 | 0.801492 | 8.78E-49 | -1.69E-46 |
| MS.gene050876 | MS.gene20919 | 0.867922 | 9.57E-66 | -1.69E-46 |
| MS.gene05087 | MS.gene20919 | 0.884518 | 1.79E-71 | -1.69E-46 |
| MS.gene050986 | MS.gene20919 | 0.801104 | 1.05E-48 | -1.69E-46 |
| MS.gene052579 | MS.gene20919 | -0.803134 | 4.03E-49 | -1.69E-46 |
| MS.gene054638 | MS.gene20919 | 0.83192 | 1.27E-55 | -1.69E-46 |
| MS.gene054954 | MS.gene20919 | 0.803872 | 2.83E-49 | -1.69E-46 |
| MS.gene055333 | MS.gene20919 | -0.804763 | 1.85E-49 | -1.69E-46 |
| MS.gene055634 | MS.gene20919 | 0.894463 | 2.41E-75 | -1.69E-46 |
| MS.gene055638 | MS.gene20919 | 0.812769 | 3.59E-51 | -1.69E-46 |
| MS.gene055776 | MS.gene20919 | 0.802274 | 6.06E-49 | -1.69E-46 |
| MS.gene055849 | MS.gene20919 | 0.81387 | 2.06E-51 | -1.69E-46 |
| MS.gene056405 | MS.gene20919 | 0.800038 | 1.74E-48 | -1.69E-46 |
| MS.gene056910 | MS.gene20919 | 0.827538 | 1.48E-54 | -1.69E-46 |
| MS.gene057148 | MS.gene20919 | 0.865161 | 7.22E-65 | -1.69E-46 |
| MS.gene057986 | MS.gene20919 | 0.828865 | 7.09E-55 | -1.69E-46 |
| MS.gene058719 | MS.gene20919 | 0.828733 | 7.63E-55 | -1.69E-46 |
| MS.gene059022 | MS.gene20919 | 0.811217 | 7.82E-51 | -1.69E-46 |
| MS.gene059026 | MS.gene20919 | 0.871753 | 5.37E-67 | -1.69E-46 |
| MS.gene060338 | MS.gene20919 | -0.818248 | 2.16E-52 | -1.69E-46 |
| MS.gene060703 | MS.gene20919 | 0.822895 | 1.85E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene025636 | MS.gene20919 | PPI |
| MS.gene41080 | MS.gene20919 | PPI |
| MS.gene034800 | MS.gene20919 | PPI |
| MS.gene055647 | MS.gene20919 | PPI |
| MS.gene20919 | MS.gene007149 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20919.t1 | MTR_1g085730 | 98.185 | 551 | 10 | 0 | 1 | 551 | 1 | 551 | 0.0 | 1097 |
| MS.gene20919.t1 | MTR_1g085730 | 97.527 | 364 | 9 | 0 | 1 | 364 | 1 | 364 | 0.0 | 723 |
| MS.gene20919.t1 | MTR_7g031310 | 29.615 | 493 | 310 | 14 | 73 | 545 | 16 | 491 | 4.36e-51 | 182 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20919.t1 | AT4G01690 | 78.889 | 540 | 108 | 4 | 12 | 551 | 4 | 537 | 0.0 | 854 |
| MS.gene20919.t1 | AT4G01690 | 74.259 | 540 | 102 | 5 | 12 | 551 | 4 | 506 | 0.0 | 784 |
| MS.gene20919.t1 | AT5G14220 | 27.959 | 490 | 319 | 12 | 75 | 545 | 21 | 495 | 3.02e-49 | 178 |
| MS.gene20919.t1 | AT5G14220 | 27.959 | 490 | 319 | 12 | 75 | 545 | 69 | 543 | 7.28e-49 | 178 |
| MS.gene20919.t1 | AT5G14220 | 28.041 | 485 | 295 | 14 | 75 | 545 | 21 | 465 | 8.42e-47 | 171 |
| MS.gene20919.t1 | AT5G14220 | 26.398 | 447 | 299 | 11 | 118 | 545 | 2 | 437 | 3.34e-40 | 152 |
| MS.gene20919.t1 | AT5G14220 | 26.398 | 447 | 299 | 11 | 118 | 545 | 2 | 437 | 3.34e-40 | 152 |
Find 173 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTCAGGATCCAATTGTTT+TGG | 0.225364 | 1.3:+60891056 | MS.gene20919:CDS |
| CAAAATGGTGGTAGCATTAT+TGG | 0.232913 | 1.3:+60888590 | MS.gene20919:CDS |
| CCTGAGCATTTGGATTTATA+AGG | 0.239671 | 1.3:-60891041 | None:intergenic |
| ATTGGAGGGGCTACCAATTC+TGG | 0.258952 | 1.3:+60890470 | MS.gene20919:CDS |
| GATTTGAGGGGCTGTTCCTT+GGG | 0.259606 | 1.3:+60891169 | MS.gene20919:CDS |
| CGGAGAAGGGTTTGAGAGGG+TGG | 0.262547 | 1.3:-60880798 | None:intergenic |
| TGCAAAGAAACAACTCCTTC+TGG | 0.269612 | 1.3:-60889013 | None:intergenic |
| TGGAGAGAGATGGGTTTCTT+TGG | 0.273128 | 1.3:+60881123 | MS.gene20919:CDS |
| TCTCTCCTGTATTGCTTTGA+AGG | 0.274882 | 1.3:-60888618 | None:intergenic |
| GGCAAGATCAGGGCTGGCTT+TGG | 0.280653 | 1.3:+60882086 | MS.gene20919:CDS |
| GGCAAATCAGTTGGCTTTCC+CGG | 0.284184 | 1.3:-60882038 | None:intergenic |
| TCTGATCTAATGGCTTCTTT+TGG | 0.297997 | 1.3:-60890147 | None:intergenic |
| ACAATTGGATCCTGAGCATT+TGG | 0.304286 | 1.3:-60891051 | None:intergenic |
| GATGGTGAGTTGAAGGGATT+TGG | 0.305933 | 1.3:+60890180 | MS.gene20919:CDS |
| TTAAGTATGAAAGCAGCTTT+TGG | 0.310156 | 1.3:+60888548 | MS.gene20919:CDS |
| TTTGAAGGACGATCTTGTTT+TGG | 0.318825 | 1.3:+60881962 | MS.gene20919:CDS |
| GCCTCGGTAACAACAACATT+GGG | 0.323168 | 1.3:-60881068 | None:intergenic |
| TCAGAAGGTTGAAAACTATT+AGG | 0.342704 | 1.3:-60881155 | None:intergenic |
| CTTCCAGGTGGTGCTCGGTT+AGG | 0.346004 | 1.3:-60890428 | None:intergenic |
| CCATTCCACAACACAAATCT+AGG | 0.348854 | 1.3:-60881999 | None:intergenic |
| GGATTTGAGGGGCTGTTCCT+TGG | 0.351474 | 1.3:+60891168 | MS.gene20919:CDS |
| ACAGTTTGACCCTTTGGCTT+TGG | 0.353786 | 1.3:-60888757 | None:intergenic |
| TACCTAATGTTTGCACTCCT+TGG | 0.364807 | 1.3:-60890221 | None:intergenic |
| TGAGTATTGGTGGCAAGATC+AGG | 0.365761 | 1.3:+60882075 | MS.gene20919:CDS |
| GAGTTCGTGCGTCGAAATCT+TGG | 0.366392 | 1.3:+60882296 | MS.gene20919:CDS |
| TTCTTTGACTTAATGAGTAT+TGG | 0.369041 | 1.3:+60882062 | MS.gene20919:CDS |
| TTGAATTGGAGGAGGGGAAA+GGG | 0.374371 | 1.3:-60880836 | None:intergenic |
| GTAACAAGGTGAAGTTATCT+TGG | 0.380123 | 1.3:+60888933 | MS.gene20919:CDS |
| GCTATTCCACAGTTCTTAGT+TGG | 0.382466 | 1.3:+60891099 | MS.gene20919:CDS |
| GAAATGGAAACTGCCGCAAC+TGG | 0.385344 | 1.3:-60890120 | None:intergenic |
| GCAAAGAAACAACTCCTTCT+GGG | 0.387031 | 1.3:-60889012 | None:intergenic |
| TATCAAGCATTCTGATCTAA+TGG | 0.392972 | 1.3:-60890157 | None:intergenic |
| GGAGAGAGATGGGTTTCTTT+GGG | 0.394520 | 1.3:+60881124 | MS.gene20919:CDS |
| TGGCTCTGACCTGAACAAAA+AGG | 0.394707 | 1.3:-60882347 | None:intergenic |
| CTTTGATAAAATCCCAGAAT+TGG | 0.395418 | 1.3:-60890483 | None:intergenic |
| CTATGTGTCTGGTGTTGCCT+TGG | 0.396049 | 1.3:+60891197 | MS.gene20919:CDS |
| AGTTCGTGCGTCGAAATCTT+GGG | 0.397568 | 1.3:+60882297 | MS.gene20919:CDS |
| TTCAAGAGTAGAACCCTTCC+AGG | 0.398239 | 1.3:-60890443 | None:intergenic |
| TTCCAGGTGGTGCTCGGTTA+GGG | 0.398524 | 1.3:-60890427 | None:intergenic |
| GATCCAACAGTTTGACCCTT+TGG | 0.399991 | 1.3:-60888763 | None:intergenic |
| GATGGGTTTCTTTGGGAAGA+AGG | 0.407260 | 1.3:+60881131 | MS.gene20919:CDS |
| GGTTTGAGAGGGTGGGAAGA+AGG | 0.407669 | 1.3:-60880790 | None:intergenic |
| GGGAAAGGGGAATGGAGATG+AGG | 0.409681 | 1.3:-60880822 | None:intergenic |
| ACCACCTCAAAATCAAATTC+CGG | 0.416364 | 1.3:+60880951 | MS.gene20919:CDS |
| TTGGAGGGGCTACCAATTCT+GGG | 0.425638 | 1.3:+60890471 | MS.gene20919:CDS |
| TGGGAAATTGAGGCCGGTGC+CGG | 0.426371 | 1.3:+60882019 | MS.gene20919:CDS |
| GTGGTGCTCGGTTAGGGAAA+AGG | 0.428455 | 1.3:-60890421 | None:intergenic |
| GTCAAACTGTTGGATCATTC+CGG | 0.429218 | 1.3:+60888770 | MS.gene20919:CDS |
| GCAACATGGTAAGTCCCTTC+CGG | 0.429534 | 1.3:-60888789 | None:intergenic |
| AATGGAGATGAGGGCGGAGA+AGG | 0.430870 | 1.3:-60880812 | None:intergenic |
| AGTATTAGTAAACTGGATAG+TGG | 0.439960 | 1.3:+60888965 | MS.gene20919:CDS |
| CTAGATTTGTGTTGTGGAAT+GGG | 0.440359 | 1.3:+60882000 | MS.gene20919:CDS |
| AGGGCTGGCTTTGGAGCACT+TGG | 0.442410 | 1.3:+60882095 | MS.gene20919:CDS |
| TACCTAGCAGAAATTGCGTT+TGG | 0.443372 | 1.3:-60888811 | None:intergenic |
| TGGAGGAGGGGAAAGGGGAA+TGG | 0.448268 | 1.3:-60880830 | None:intergenic |
| ATGGAGATGAGGGCGGAGAA+GGG | 0.448458 | 1.3:-60880811 | None:intergenic |
| GGAAAGGGGAATGGAGATGA+GGG | 0.452855 | 1.3:-60880821 | None:intergenic |
| TTTGAATTGGAGGAGGGGAA+AGG | 0.454290 | 1.3:-60880837 | None:intergenic |
| TGAATTGGAGGAGGGGAAAG+GGG | 0.455157 | 1.3:-60880835 | None:intergenic |
| AAGGGGAATGGAGATGAGGG+CGG | 0.459680 | 1.3:-60880818 | None:intergenic |
| TCAGTTGGCTTTCCCGGCAC+CGG | 0.460917 | 1.3:-60882032 | None:intergenic |
| TACTCTTGAATTACATTGGA+GGG | 0.461041 | 1.3:+60890456 | MS.gene20919:CDS |
| GGAGACGGAGAATGGGGTTA+TGG | 0.461330 | 1.3:-60880887 | None:intergenic |
| TATGTGTCTGGTGTTGCCTT+GGG | 0.462152 | 1.3:+60891198 | MS.gene20919:CDS |
| GTGTGGAGGCTCGAACAAAA+TGG | 0.463440 | 1.3:+60888575 | MS.gene20919:CDS |
| GGAGCAACGGAGACGGAGAA+TGG | 0.472053 | 1.3:-60880895 | None:intergenic |
| AAGGAACAGCCCCTCAAATC+CGG | 0.472268 | 1.3:-60891166 | None:intergenic |
| GTTCTACTCTTGAATTACAT+TGG | 0.473931 | 1.3:+60890452 | MS.gene20919:CDS |
| AGAAAACACACTGGAGGAGG+AGG | 0.474459 | 1.3:-60882125 | None:intergenic |
| AACACAAATCTAGGTGCATC+AGG | 0.475052 | 1.3:-60881990 | None:intergenic |
| GAGCAACGGAGACGGAGAAT+GGG | 0.476836 | 1.3:-60880894 | None:intergenic |
| TGGTGCTCGGTTAGGGAAAA+GGG | 0.478452 | 1.3:-60890420 | None:intergenic |
| TTTGACTTAATGAGTATTGG+TGG | 0.479201 | 1.3:+60882065 | MS.gene20919:CDS |
| GAAAGTGCATCTGCAGCAGC+AGG | 0.479760 | 1.3:-60890081 | None:intergenic |
| GGGAAATTGAGGCCGGTGCC+GGG | 0.482439 | 1.3:+60882020 | MS.gene20919:CDS |
| AGATCAGAATGCTTGATAGA+TGG | 0.483446 | 1.3:+60890162 | MS.gene20919:CDS |
| CGCCTCGGTAACAACAACAT+TGG | 0.487396 | 1.3:-60881069 | None:intergenic |
| GCCTTGGGAAGGTGTGTTGA+GGG | 0.489434 | 1.3:+60891213 | MS.gene20919:CDS |
| CCTTATAAATCCAAATGCTC+AGG | 0.489745 | 1.3:+60891041 | MS.gene20919:CDS |
| GCGTCGAAATCTTGGGGCCG+AGG | 0.491211 | 1.3:+60882304 | MS.gene20919:CDS |
| AGCCAAGGAGTGCAAACATT+AGG | 0.492529 | 1.3:+60890219 | MS.gene20919:CDS |
| GACTGTGTGGTTGTTGGTGG+TGG | 0.492721 | 1.3:+60880990 | MS.gene20919:CDS |
| TTCCCTAACCGAGCACCACC+TGG | 0.500403 | 1.3:+60890425 | MS.gene20919:CDS |
| CTTGATAGATGGTGAGTTGA+AGG | 0.501381 | 1.3:+60890173 | MS.gene20919:CDS |
| ATTTGAGGGGCTGTTCCTTG+GGG | 0.502668 | 1.3:+60891170 | MS.gene20919:CDS |
| AAGCCAAAGGGTCAAACTGT+TGG | 0.506404 | 1.3:+60888760 | MS.gene20919:CDS |
| GTGACAGGGTCATGAGGAAT+CGG | 0.511762 | 1.3:+60882268 | MS.gene20919:intron |
| TCCGTCGACTGTGTGGTTGT+TGG | 0.512497 | 1.3:+60880984 | MS.gene20919:CDS |
| ATTATTACCGTGGAGAGAGA+TGG | 0.512962 | 1.3:+60881113 | MS.gene20919:CDS |
| TGCCTTGGGAAGGTGTGTTG+AGG | 0.513044 | 1.3:+60891212 | MS.gene20919:CDS |
| TGGAGCCTTCAAAGCAATAC+AGG | 0.517480 | 1.3:+60888613 | MS.gene20919:CDS |
| CCTAGATTTGTGTTGTGGAA+TGG | 0.519996 | 1.3:+60881999 | MS.gene20919:CDS |
| AGGGCGGAGAAGGGTTTGAG+AGG | 0.522166 | 1.3:-60880802 | None:intergenic |
| ATACTCATTAAGTCAAAGAA+AGG | 0.523934 | 1.3:-60882059 | None:intergenic |
| ACAGACAGTGGTTGCAGCAA+TGG | 0.525178 | 1.3:-60889079 | None:intergenic |
| GTTGTTGGTGGTGGCATCAG+TGG | 0.527241 | 1.3:+60880999 | MS.gene20919:CDS |
| CAGTGGACTATGTATTGCTC+AGG | 0.529861 | 1.3:+60881016 | MS.gene20919:CDS |
| CTACTCTTGAATTACATTGG+AGG | 0.531064 | 1.3:+60890455 | MS.gene20919:CDS |
| TTATTACCGTGGAGAGAGAT+GGG | 0.537500 | 1.3:+60881114 | MS.gene20919:CDS |
| CCGCAATGGAGCAACGGAGA+CGG | 0.540345 | 1.3:-60880902 | None:intergenic |
| CAAAGAAACAACTCCTTCTG+GGG | 0.540704 | 1.3:-60889011 | None:intergenic |
| GCAGGTGGACAGTGGTTTGA+AGG | 0.542677 | 1.3:+60881947 | MS.gene20919:intron |
| AGAAATTGCGTTTGGCAACA+TGG | 0.544410 | 1.3:-60888803 | None:intergenic |
| TGTTGTGGAATGGGAAATTG+AGG | 0.544788 | 1.3:+60882009 | MS.gene20919:CDS |
| TCATATACAGGTGTCTATGC+CGG | 0.548115 | 1.3:+60888512 | MS.gene20919:intron |
| ATTGGTGGCAAGATCAGGGC+TGG | 0.549710 | 1.3:+60882080 | MS.gene20919:CDS |
| ACTCTTGAATTACATTGGAG+GGG | 0.550694 | 1.3:+60890457 | MS.gene20919:CDS |
| AAAAGAAAACACACTGGAGG+AGG | 0.550713 | 1.3:-60882128 | None:intergenic |
| GAACCCTTCCAGGTGGTGCT+CGG | 0.551325 | 1.3:-60890433 | None:intergenic |
| GTCGACTGTGTGGTTGTTGG+TGG | 0.553915 | 1.3:+60880987 | MS.gene20919:CDS |
| TCAAAGAAAGGCAAATCAGT+TGG | 0.554397 | 1.3:-60882047 | None:intergenic |
| GATTTGGTCAATTGCATCCA+CGG | 0.558189 | 1.3:+60890196 | MS.gene20919:CDS |
| GGAGAAGGGTTTGAGAGGGT+GGG | 0.559498 | 1.3:-60880797 | None:intergenic |
| TGTCTGGTGTTGCCTTGGGA+AGG | 0.559605 | 1.3:+60891202 | MS.gene20919:CDS |
| GAGTATTGGTGGCAAGATCA+GGG | 0.567150 | 1.3:+60882076 | MS.gene20919:CDS |
| TTTGAGGGGCTGTTCCTTGG+GGG | 0.567319 | 1.3:+60891171 | MS.gene20919:CDS |
| TGCGGTGGATTCCTCCGCAA+TGG | 0.568908 | 1.3:-60880916 | None:intergenic |
| TAGGCGTCTGCCAAAGCCAA+AGG | 0.571021 | 1.3:+60888747 | MS.gene20919:intron |
| GAGGCGAAAGATCGAGTTGG+TGG | 0.572541 | 1.3:+60881086 | MS.gene20919:CDS |
| ATGCACCTAGATTTGTGTTG+TGG | 0.582787 | 1.3:+60881994 | MS.gene20919:CDS |
| TAACCGAGCACCACCTGGAA+GGG | 0.584581 | 1.3:+60890430 | MS.gene20919:CDS |
| CAATTGCATCCACGGAGCCA+AGG | 0.584598 | 1.3:+60890204 | MS.gene20919:CDS |
| AACCACACAGTCGACGGATG+AGG | 0.587789 | 1.3:-60880979 | None:intergenic |
| AGGCGTCTGCCAAAGCCAAA+GGG | 0.588421 | 1.3:+60888748 | MS.gene20919:intron |
| AATGGTGGTAGCATTATTGG+TGG | 0.588539 | 1.3:+60888593 | MS.gene20919:CDS |
| CTAACCGAGCACCACCTGGA+AGG | 0.589476 | 1.3:+60890429 | MS.gene20919:CDS |
| AACTGTTGGATCATTCCGGA+AGG | 0.589794 | 1.3:+60888774 | MS.gene20919:CDS |
| TGTTGGCAGGTTAGGTAACA+AGG | 0.592433 | 1.3:+60888919 | MS.gene20919:intron |
| GTCGACGGATGAGGACTCTC+CGG | 0.593499 | 1.3:-60880970 | None:intergenic |
| GCAGCAATGGACTAGCAACA+TGG | 0.594611 | 1.3:-60889066 | None:intergenic |
| ACTAGCAACATGGGAAGGAA+TGG | 0.596346 | 1.3:-60889056 | None:intergenic |
| CCGTCTCCGTTGCTCCATTG+CGG | 0.597409 | 1.3:+60880902 | MS.gene20919:CDS |
| ACCAACAACCACACAGTCGA+CGG | 0.599076 | 1.3:-60880985 | None:intergenic |
| TCCCTCAACACACCTTCCCA+AGG | 0.601614 | 1.3:-60891214 | None:intergenic |
| CTTTCTACAAAGCATGCTGA+TGG | 0.605299 | 1.3:+60881041 | MS.gene20919:CDS |
| TTTGTTTAATTGCAGACGGA+GGG | 0.606182 | 1.3:+60890979 | MS.gene20919:intron |
| GGGCGGAGAAGGGTTTGAGA+GGG | 0.606191 | 1.3:-60880801 | None:intergenic |
| GTTTGCACTCCTTGGCTCCG+TGG | 0.607612 | 1.3:-60890213 | None:intergenic |
| TACTTCAGCTGCTATCTCGT+AGG | 0.608699 | 1.3:-60891238 | None:intergenic |
| ACCAACTCGATCTTTCGCCT+CGG | 0.609410 | 1.3:-60881084 | None:intergenic |
| GAAAACACACTGGAGGAGGA+GGG | 0.609629 | 1.3:-60882124 | None:intergenic |
| CCCCAATGTTGTTGTTACCG+AGG | 0.610569 | 1.3:+60881067 | MS.gene20919:CDS |
| ATGGTGAGCATAGGATCAGA+AGG | 0.615324 | 1.3:-60881170 | None:intergenic |
| CATACCACCATGGTGAGCAT+AGG | 0.615890 | 1.3:-60881179 | None:intergenic |
| ATGGAAACTGCCGCAACTGG+AGG | 0.618307 | 1.3:-60890117 | None:intergenic |
| TCTCCGTTGCTCCATTGCGG+AGG | 0.619176 | 1.3:+60880905 | MS.gene20919:CDS |
| TGATCCTATGCTCACCATGG+TGG | 0.621350 | 1.3:+60881175 | MS.gene20919:CDS |
| ATTCCTCCGCAATGGAGCAA+CGG | 0.621982 | 1.3:-60880908 | None:intergenic |
| TGCCAAACGCAATTTCTGCT+AGG | 0.622423 | 1.3:+60888809 | MS.gene20919:CDS |
| GTCCTCATCCGTCGACTGTG+TGG | 0.625269 | 1.3:+60880977 | MS.gene20919:CDS |
| AAGAACTGTGGAATAGCTTG+AGG | 0.628529 | 1.3:-60891093 | None:intergenic |
| TTGATAGATGGTGAGTTGAA+GGG | 0.630684 | 1.3:+60890174 | MS.gene20919:CDS |
| TGCAGAGAGTGTACAAGTAG+CGG | 0.631367 | 1.3:+60891274 | MS.gene20919:CDS |
| ACGAAGGTGACAGGGTCATG+AGG | 0.634684 | 1.3:+60882262 | MS.gene20919:intron |
| GTGGAATGGGAAATTGAGGC+CGG | 0.635091 | 1.3:+60882013 | MS.gene20919:CDS |
| AAGAAACCCATCTCTCTCCA+CGG | 0.637483 | 1.3:-60881120 | None:intergenic |
| AGGCGAAAGATCGAGTTGGT+GGG | 0.637489 | 1.3:+60881087 | MS.gene20919:CDS |
| CAGCAATGGACTAGCAACAT+GGG | 0.637669 | 1.3:-60889065 | None:intergenic |
| TGGTGGGAATATTATTACCG+TGG | 0.637750 | 1.3:+60881103 | MS.gene20919:CDS |
| TTATTTGTGCAGGTGGACAG+TGG | 0.638748 | 1.3:+60881939 | MS.gene20919:intron |
| AATGGACTAGCAACATGGGA+AGG | 0.638945 | 1.3:-60889061 | None:intergenic |
| GTTCGTGCGTCGAAATCTTG+GGG | 0.639972 | 1.3:+60882298 | MS.gene20919:CDS |
| AGATGTCCAACTAAGAACTG+TGG | 0.655954 | 1.3:-60891105 | None:intergenic |
| TTCTGATCCTATGCTCACCA+TGG | 0.662399 | 1.3:+60881172 | MS.gene20919:CDS |
| GAAGAAGGTGAGTGTAACCA+TGG | 0.663337 | 1.3:-60880775 | None:intergenic |
| AGCAACGGAGACGGAGAATG+GGG | 0.663402 | 1.3:-60880893 | None:intergenic |
| ACCGAGGCGAAAGATCGAGT+TGG | 0.669092 | 1.3:+60881083 | MS.gene20919:CDS |
| TTGACGTATGAAACCCCAGA+AGG | 0.670583 | 1.3:+60888998 | MS.gene20919:CDS |
| ACTGTTGGATCATTCCGGAA+GGG | 0.675135 | 1.3:+60888775 | MS.gene20919:CDS |
| TGGAGGCTCGAACAAAATGG+TGG | 0.692440 | 1.3:+60888578 | MS.gene20919:CDS |
| TTGATTACAACATACCACCA+TGG | 0.703359 | 1.3:-60881189 | None:intergenic |
| CCTCGGTAACAACAACATTG+GGG | 0.719137 | 1.3:-60881067 | None:intergenic |
| AAGAGTAGAACCCTTCCAGG+TGG | 0.742286 | 1.3:-60890440 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 60880777 | 60891293 | 60880777 | ID=MS.gene20919 |
| chr1.3 | mRNA | 60880777 | 60891293 | 60880777 | ID=MS.gene20919.t1;Parent=MS.gene20919 |
| chr1.3 | exon | 60880777 | 60881196 | 60880777 | ID=MS.gene20919.t1.exon1;Parent=MS.gene20919.t1 |
| chr1.3 | CDS | 60880777 | 60881196 | 60880777 | ID=cds.MS.gene20919.t1;Parent=MS.gene20919.t1 |
| chr1.3 | exon | 60881951 | 60882136 | 60881951 | ID=MS.gene20919.t1.exon2;Parent=MS.gene20919.t1 |
| chr1.3 | CDS | 60881951 | 60882136 | 60881951 | ID=cds.MS.gene20919.t1;Parent=MS.gene20919.t1 |
| chr1.3 | exon | 60882275 | 60882359 | 60882275 | ID=MS.gene20919.t1.exon3;Parent=MS.gene20919.t1 |
| chr1.3 | CDS | 60882275 | 60882359 | 60882275 | ID=cds.MS.gene20919.t1;Parent=MS.gene20919.t1 |
| chr1.3 | exon | 60888522 | 60888669 | 60888522 | ID=MS.gene20919.t1.exon4;Parent=MS.gene20919.t1 |
| chr1.3 | CDS | 60888522 | 60888669 | 60888522 | ID=cds.MS.gene20919.t1;Parent=MS.gene20919.t1 |
| chr1.3 | exon | 60888750 | 60888830 | 60888750 | ID=MS.gene20919.t1.exon5;Parent=MS.gene20919.t1 |
| chr1.3 | CDS | 60888750 | 60888830 | 60888750 | ID=cds.MS.gene20919.t1;Parent=MS.gene20919.t1 |
| chr1.3 | exon | 60888928 | 60889099 | 60888928 | ID=MS.gene20919.t1.exon6;Parent=MS.gene20919.t1 |
| chr1.3 | CDS | 60888928 | 60889099 | 60888928 | ID=cds.MS.gene20919.t1;Parent=MS.gene20919.t1 |
| chr1.3 | exon | 60890081 | 60890240 | 60890081 | ID=MS.gene20919.t1.exon7;Parent=MS.gene20919.t1 |
| chr1.3 | CDS | 60890081 | 60890240 | 60890081 | ID=cds.MS.gene20919.t1;Parent=MS.gene20919.t1 |
| chr1.3 | exon | 60890402 | 60890505 | 60890402 | ID=MS.gene20919.t1.exon8;Parent=MS.gene20919.t1 |
| chr1.3 | CDS | 60890402 | 60890505 | 60890402 | ID=cds.MS.gene20919.t1;Parent=MS.gene20919.t1 |
| chr1.3 | exon | 60890994 | 60891293 | 60890994 | ID=MS.gene20919.t1.exon9;Parent=MS.gene20919.t1 |
| chr1.3 | CDS | 60890994 | 60891293 | 60890994 | ID=cds.MS.gene20919.t1;Parent=MS.gene20919.t1 |
| Gene Sequence |
| Protein sequence |
