AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene47439

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene47439.t1 MTR_1g062930 97.890 474 10 0 1 474 1 474 0.0 972
MS.gene47439.t1 MTR_7g102940 74.737 475 109 5 1 472 1 467 0.0 696
MS.gene47439.t1 MTR_1g111590 68.916 415 125 1 1 415 1 411 0.0 619
MS.gene47439.t1 MTR_6g021950 60.337 416 149 2 2 417 3 402 0.0 524
MS.gene47439.t1 MTR_4g104320 62.141 383 137 2 34 415 28 403 2.11e-176 501
MS.gene47439.t1 MTR_1g047370 59.948 382 146 1 34 415 72 446 3.93e-172 491
MS.gene47439.t1 MTR_3g075320 59.459 407 153 2 9 415 8 402 5.90e-170 484
MS.gene47439.t1 MTR_7g059290 59.686 382 147 1 34 415 66 440 6.82e-169 483
MS.gene47439.t1 MTR_3g086310 60.471 382 141 3 34 415 28 399 6.61e-159 456
MS.gene47439.t1 MTR_3g086320 54.258 411 172 4 2 411 3 398 1.20e-151 438
MS.gene47439.t1 MTR_4g107870 51.958 383 174 4 33 411 50 426 1.60e-144 421
MS.gene47439.t1 MTR_5g038510 55.524 353 148 2 33 380 61 409 8.00e-144 419
MS.gene47439.t1 MTR_6g011420 52.850 386 174 3 33 411 61 445 5.68e-143 417
MS.gene47439.t1 MTR_8g468980 54.520 354 153 2 66 411 94 447 7.79e-143 417
MS.gene47439.t1 MTR_5g038490 52.756 381 178 2 33 411 61 441 1.54e-138 406
MS.gene47439.t1 MTR_7g009390 50.508 394 180 3 33 411 50 443 5.74e-136 399
MS.gene47439.t1 MTR_4g132460 55.848 342 147 3 71 411 39 377 4.86e-135 395
MS.gene47439.t1 MTR_2g023990 54.121 364 157 4 57 416 49 406 8.32e-134 392
MS.gene47439.t1 MTR_3g075320 61.644 292 100 2 9 300 8 287 5.87e-123 360
MS.gene47439.t1 MTR_8g078390 43.251 363 196 7 59 415 30 388 2.19e-90 281
MS.gene47439.t1 MTR_8g078310 41.962 367 195 8 59 415 30 388 5.15e-86 269
MS.gene47439.t1 MTR_3g030900 41.645 377 201 10 45 415 6 369 2.46e-84 265
MS.gene47439.t1 MTR_8g078280 40.270 370 200 9 54 415 32 388 6.95e-80 253
MS.gene47439.t1 MTR_8g078350 41.873 363 201 7 59 415 30 388 1.71e-78 250
MS.gene47439.t1 MTR_4g064420 40.274 365 190 7 54 415 32 371 4.59e-78 249
MS.gene47439.t1 MTR_5g019170 38.929 411 215 12 71 473 41 423 3.05e-75 243
MS.gene47439.t1 MTR_5g019160 42.090 354 189 10 71 415 41 387 5.49e-75 241
MS.gene47439.t1 MTR_5g019060 42.416 356 185 10 71 415 41 387 5.85e-75 241
MS.gene47439.t1 MTR_5g035840 41.457 357 187 10 71 415 41 387 1.51e-74 239
MS.gene47439.t1 MTR_5g019090 40.741 351 198 8 71 415 41 387 4.80e-72 233
MS.gene47439.t1 MTR_3g070740 54.500 200 78 3 213 411 131 318 6.57e-68 220
MS.gene47439.t1 MTR_2g023980 48.305 236 89 4 146 380 1 204 3.58e-67 218
MS.gene47439.t1 MTR_1g069950 42.963 270 146 4 146 411 1 266 8.26e-64 207
MS.gene47439.t1 MTR_6g077900 41.455 275 138 6 104 376 6 259 1.27e-51 176
MS.gene47439.t1 MTR_1g115550 36.735 294 160 6 82 374 7 275 2.15e-41 150
MS.gene47439.t1 MTR_1g067450 37.389 337 171 10 90 415 64 371 1.92e-39 146
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene47439.t1 AT3G53190 69.263 475 134 6 1 468 2 471 0.0 644
MS.gene47439.t1 AT5G04310 62.556 446 153 3 6 437 18 463 0.0 559
MS.gene47439.t1 AT5G04310 62.556 446 153 3 6 437 18 463 0.0 559
MS.gene47439.t1 AT5G04310 64.455 422 138 2 6 415 18 439 0.0 554
MS.gene47439.t1 AT3G54920 65.271 406 124 4 20 417 22 418 0.0 545
MS.gene47439.t1 AT4G13710 62.565 382 140 1 34 415 88 466 1.10e-180 514
MS.gene47439.t1 AT4G13710 62.565 382 140 1 34 415 69 447 1.69e-180 513
MS.gene47439.t1 AT5G63180 59.169 409 152 4 9 415 33 428 1.75e-176 502
MS.gene47439.t1 AT1G04680 56.429 420 170 3 8 415 7 425 3.11e-172 491
MS.gene47439.t1 AT1G67750 62.169 378 134 2 34 411 32 400 3.67e-172 490
MS.gene47439.t1 AT3G07010 60.053 378 144 1 34 411 38 408 2.98e-169 483
MS.gene47439.t1 AT3G24670 61.111 378 140 1 34 411 62 432 1.75e-168 482
MS.gene47439.t1 AT3G07010 63.584 346 126 0 66 411 30 375 3.46e-168 479
MS.gene47439.t1 AT4G24780 60.000 390 150 1 26 415 21 404 6.07e-167 477
MS.gene47439.t1 AT4G24780 60.000 390 150 1 26 415 21 404 6.07e-167 477
MS.gene47439.t1 AT3G24230 58.639 382 154 2 34 415 70 447 1.17e-166 478
MS.gene47439.t1 AT4G13210 60.847 378 142 1 34 411 22 393 1.90e-164 470
MS.gene47439.t1 AT4G13210 60.847 378 142 1 34 411 59 430 2.46e-164 471
MS.gene47439.t1 AT5G48900 57.767 412 164 3 3 411 5 409 4.52e-161 462
MS.gene47439.t1 AT3G27400 53.676 408 181 2 8 415 9 408 4.26e-158 454
MS.gene47439.t1 AT3G27400 54.937 395 170 2 21 415 26 412 4.79e-158 454
MS.gene47439.t1 AT1G14420 50.474 422 190 4 10 412 31 452 1.42e-152 442
MS.gene47439.t1 AT3G01270 55.398 352 155 2 62 411 116 467 2.49e-143 419
MS.gene47439.t1 AT5G55720 50.856 409 179 6 10 416 1 389 1.59e-142 414
MS.gene47439.t1 AT5G15110 53.602 347 159 2 67 411 118 464 4.34e-141 413
MS.gene47439.t1 AT2G02720 48.537 410 193 3 21 412 39 448 1.11e-140 412
MS.gene47439.t1 AT1G11920 59.119 318 128 2 63 380 29 344 1.05e-137 401
MS.gene47439.t1 AT4G22090 54.000 350 151 4 71 416 47 390 2.20e-130 383
MS.gene47439.t1 AT4G22080 53.714 350 152 4 71 416 47 390 6.19e-130 382
MS.gene47439.t1 AT1G30350 50.440 341 153 3 71 411 36 360 2.26e-117 349
MS.gene47439.t1 AT5G09280 47.059 238 124 2 104 340 6 242 1.18e-68 221
MS.gene47439.t1 AT3G55140 36.713 286 155 6 90 374 16 276 1.54e-40 148
MS.gene47439.t1 AT3G09540 36.552 290 154 8 88 374 61 323 4.89e-38 143
MS.gene47439.t1 AT3G09540 36.207 290 151 9 88 374 61 319 1.33e-36 139
MS.gene47439.t1 AT3G55140 32.566 304 178 7 125 421 22 305 1.38e-34 132
MS.gene47439.t1 AT3G09540 37.131 237 123 5 88 323 61 272 5.86e-33 126

Find 108 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAATAGCATTCAACCATTT+TGG 0.176765 1.4:+51777538 MS.gene47439:CDS
TGACGATTGTTGGCCCAATC+TGG 0.246902 1.4:-51775525 None:intergenic
ACTTCTAAGGCAACAGATTC+AGG 0.249046 1.4:-51774883 None:intergenic
AACATAAGAGTCCAACAAAA+AGG 0.254751 1.4:-51779249 None:intergenic
ACAATGGCTGCTGGTGTTCT+TGG 0.258365 1.4:+51778117 MS.gene47439:CDS
TATCTTAAAGTACCAGGTTT+TGG 0.259866 1.4:-51775651 None:intergenic
CATTTCCAACAATCATCTAT+TGG 0.287315 1.4:-51775498 None:intergenic
TGATGTTCCATGGTTGAAAA+AGG 0.293620 1.4:-51774824 None:intergenic
GAACTAATTGTTGACCAAAA+TGG 0.305223 1.4:-51777552 None:intergenic
AGGTTAGCAGATTGTGCTAT+AGG 0.311555 1.4:+51775549 MS.gene47439:CDS
AATAGCTACAAAACCATTGA+TGG 0.315393 1.4:+51775753 MS.gene47439:CDS
GTTCTAAATCCATAGTGTTC+TGG 0.323445 1.4:-51777307 None:intergenic
ATTTCCAACAATCATCTATT+GGG 0.325009 1.4:-51775497 None:intergenic
TTAGGAAAATGCAGGTTGTT+TGG 0.336248 1.4:-51774786 None:intergenic
GCGAATGGACTTCGTGGAAT+TGG 0.339342 1.4:+51777971 MS.gene47439:CDS
GCTGTTAAAGATCTATGGTT+AGG 0.343185 1.4:-51779279 None:intergenic
GCAGATTGTGCTATAGGGTT+TGG 0.343920 1.4:+51775555 MS.gene47439:CDS
TGCTAACCTTTGACGATTGT+TGG 0.344322 1.4:-51775535 None:intergenic
GATTATAGTATGTCATATTC+TGG 0.346483 1.4:+51779163 MS.gene47439:CDS
GTTACTTGCATTCCTGAGTC+TGG 0.346633 1.4:-51777517 None:intergenic
GAAATCCTATCAGCAGCTTT+AGG 0.349951 1.4:-51778087 None:intergenic
TGTGTACCTGTGAACTTCTA+AGG 0.361301 1.4:-51774896 None:intergenic
CGGTTTAATAGACGTCGTTA+TGG 0.370008 1.4:+51777411 MS.gene47439:CDS
GGAGATGGAATCTCAATATT+CGG 0.372629 1.4:+51777340 MS.gene47439:CDS
GGTTAGCAGATTGTGCTATA+GGG 0.381880 1.4:+51775550 MS.gene47439:CDS
GGTTTAATAGACGTCGTTAT+GGG 0.389398 1.4:+51777412 MS.gene47439:CDS
GTGACGAAGAGGTTGGATTC+TGG 0.389452 1.4:+51777943 MS.gene47439:CDS
GATGCAAGGTAACCGGTATA+CGG 0.413903 1.4:+51777894 MS.gene47439:intron
AACTTAATCATCATGTTACT+TGG 0.416311 1.4:-51775711 None:intergenic
AGGAGCAAAGTAGCGAGATT+AGG 0.420361 1.4:-51774804 None:intergenic
CATAACGAGGTTATGTTACT+AGG 0.428840 1.4:+51777475 MS.gene47439:CDS
GGTGCTGATGTTCATATTGT+TGG 0.431570 1.4:+51775780 MS.gene47439:CDS
TTTGTTGATTCAGGTGATAA+GGG 0.433331 1.4:+51778030 MS.gene47439:CDS
CTGTTAAAGATCTATGGTTA+GGG 0.438693 1.4:-51779278 None:intergenic
TTCAGAGAATGCCACGTTGT+AGG 0.439794 1.4:+51777572 MS.gene47439:CDS
GACGATTGTTGGCCCAATCT+GGG 0.446148 1.4:-51775524 None:intergenic
TATTCGGGTCAAAAGACATA+TGG 0.449746 1.4:+51777356 MS.gene47439:CDS
GAGATGGAATCTCAATATTC+GGG 0.450110 1.4:+51777341 MS.gene47439:CDS
TTGGAAATGCGACCCAGATT+GGG 0.450125 1.4:+51775512 MS.gene47439:CDS
AAGGCAACAGATTCAGGGTC+TGG 0.459566 1.4:-51774877 None:intergenic
GAAACCCAATAGATGATTGT+TGG 0.460719 1.4:+51775493 MS.gene47439:CDS
TGTATGCTATTGGTGGAAGC+GGG 0.461262 1.4:+51777641 MS.gene47439:CDS
GTTGGAAATGCGACCCAGAT+TGG 0.464792 1.4:+51775511 MS.gene47439:CDS
TATCTCTGATGCAAGGTAAC+CGG 0.469363 1.4:+51777887 MS.gene47439:intron
TCTAGTCTTACAATGGCTGC+TGG 0.469801 1.4:+51778108 MS.gene47439:CDS
CTGGTGTTCTTGGTGTTGCT+AGG 0.475057 1.4:+51778127 MS.gene47439:CDS
TTGATCCTAAAGCTGCTGAT+AGG 0.481095 1.4:+51778082 MS.gene47439:CDS
CTATAATCACCACCACCGTT+TGG 0.485490 1.4:-51779148 None:intergenic
CAAAATGCCAAAGGAGGAAA+AGG 0.490161 1.4:+51775579 MS.gene47439:CDS
ATGAGCAGGGACAATAATCT+AGG 0.491954 1.4:+51779109 MS.gene47439:intron
TGGGAGATGTATGCTATTGG+TGG 0.495777 1.4:+51777634 MS.gene47439:CDS
TTATACAAAATGAACCACTT+TGG 0.496510 1.4:+51775679 MS.gene47439:CDS
CCTCGTTATGGTGTGAGAAA+TGG 0.497230 1.4:-51777462 None:intergenic
CATCCTCAGGAGCCGTATAC+CGG 0.501557 1.4:-51777906 None:intergenic
TGCTTCGCGTCAACATCCTC+AGG 0.504471 1.4:-51777919 None:intergenic
CTAGTAACATAACCTCGTTA+TGG 0.514245 1.4:-51777474 None:intergenic
GAAATCTGAAGGTGATGTTA+TGG 0.519098 1.4:+51777993 MS.gene47439:CDS
ATGCTTAACCTCACTCTCCC+TGG 0.521716 1.4:+51774847 MS.gene47439:CDS
CGTTCGAGTCCAGAACACTA+TGG 0.523323 1.4:+51777298 MS.gene47439:CDS
ATCAGCACCACGACCATCAA+TGG 0.524009 1.4:-51775766 None:intergenic
TCAGGGTCTGGATGTTGACC+AGG 0.526030 1.4:-51774865 None:intergenic
AGAATGCCACGTTGTAGGCT+CGG 0.529636 1.4:+51777577 MS.gene47439:CDS
TGGATTCTGGTGACAGCGAA+TGG 0.532614 1.4:+51777956 MS.gene47439:CDS
GTTCATCATTGTCATCCCTC+AGG 0.533136 1.4:+51775858 MS.gene47439:CDS
ATGTATGCTATTGGTGGAAG+CGG 0.534035 1.4:+51777640 MS.gene47439:CDS
CTTCTAAGGCAACAGATTCA+GGG 0.534724 1.4:-51774882 None:intergenic
GATGTTCATATTGTTGGTGG+TGG 0.536484 1.4:+51775786 MS.gene47439:CDS
CTGTTGCCTTAGAAGTTCAC+AGG 0.539920 1.4:+51774890 MS.gene47439:CDS
ATGGTGTGAGAAATGGTTGT+TGG 0.543596 1.4:-51777455 None:intergenic
GTGACAGCGAATGGACTTCG+TGG 0.543746 1.4:+51777965 MS.gene47439:CDS
ACACTCTCACGTTGCAAAGA+CGG 0.545275 1.4:+51777391 MS.gene47439:CDS
GCTGATGTTCATATTGTTGG+TGG 0.547478 1.4:+51775783 MS.gene47439:CDS
AGATGGGAGATGTATGCTAT+TGG 0.550330 1.4:+51777631 MS.gene47439:CDS
GGTTAAGCATTGATGTTCCA+TGG 0.562902 1.4:-51774834 None:intergenic
GATTCAGGTGATAAGGGTGA+AGG 0.563107 1.4:+51778036 MS.gene47439:CDS
TACAAAACCATTGATGGTCG+TGG 0.571754 1.4:+51775759 MS.gene47439:CDS
GAAGCAAGTGACGAAGAGGT+TGG 0.573237 1.4:+51777936 MS.gene47439:CDS
TAGCGAGATTAGGAAAATGC+AGG 0.573834 1.4:-51774794 None:intergenic
ACTGCATATCTTAAAGTACC+AGG 0.583146 1.4:-51775657 None:intergenic
AGAACAGAATCAGACGGAGA+TGG 0.583522 1.4:+51777325 MS.gene47439:CDS
GACCACTACAAACCAGACTC+AGG 0.600307 1.4:+51777505 MS.gene47439:CDS
GAAGGTGATGTTATGGCGAA+TGG 0.601854 1.4:+51778000 MS.gene47439:CDS
TCGTGGAATTGGAAATCTGA+AGG 0.604215 1.4:+51777982 MS.gene47439:CDS
CTTGGAAACACAATCCAAAG+TGG 0.606839 1.4:-51775693 None:intergenic
TTCCTGAGTCTGGTTTGTAG+TGG 0.607885 1.4:-51777507 None:intergenic
ACGCGAAGCAAGTGACGAAG+AGG 0.613864 1.4:+51777932 MS.gene47439:CDS
GTATGCTATTGGTGGAAGCG+GGG 0.614417 1.4:+51777642 MS.gene47439:CDS
TAGGATTTCTAGTCTTACAA+TGG 0.616043 1.4:+51778101 MS.gene47439:CDS
TATGCTATTGGTGGAAGCGG+GGG 0.619508 1.4:+51777643 MS.gene47439:CDS
GATGTTGACCAGGGAGAGTG+AGG 0.620613 1.4:-51774855 None:intergenic
GGATTTAGAACAGAATCAGA+CGG 0.624177 1.4:+51777319 MS.gene47439:CDS
AATGCCAAAGGAGGAAAAGG+TGG 0.625369 1.4:+51775582 MS.gene47439:CDS
ACAAGAGCACCAAACGGTGG+TGG 0.630315 1.4:+51779139 MS.gene47439:CDS
GGGACAATAATCTAGGAATG+TGG 0.631048 1.4:+51779116 MS.gene47439:intron
ATTGGGCCAACAATCGTCAA+AGG 0.631186 1.4:+51775529 MS.gene47439:CDS
GATGCTGTCAATCCAAAACC+TGG 0.634213 1.4:+51775639 MS.gene47439:CDS
ATGTGGACAAGAGCACCAAA+CGG 0.637472 1.4:+51779133 MS.gene47439:CDS
TAACCGGTATACGGCTCCTG+AGG 0.641263 1.4:+51777903 MS.gene47439:CDS
GGGTTTGGACAAAATGCCAA+AGG 0.641402 1.4:+51775570 MS.gene47439:CDS
CCATTTCTCACACCATAACG+AGG 0.655644 1.4:+51777462 MS.gene47439:CDS
TTTGGACAAAATGCCAAAGG+AGG 0.659473 1.4:+51775573 MS.gene47439:CDS
CAGGGTCTGGATGTTGACCA+GGG 0.694149 1.4:-51774864 None:intergenic
CTGGTTTGTAGTGGTCACTG+TGG 0.694709 1.4:-51777498 None:intergenic
TGCAACGTGAGAGTGTGCAA+TGG 0.716046 1.4:-51777384 None:intergenic
TAAAATCATTGTTCACCACG+TGG 0.724046 1.4:-51777606 None:intergenic
TGGACAAGAGCACCAAACGG+TGG 0.739078 1.4:+51779136 MS.gene47439:CDS
ATGTATCCGAGCCTACAACG+TGG 0.778122 1.4:-51777583 None:intergenic
TAGGCTCGGATACATCCACG+TGG 0.826381 1.4:+51777591 MS.gene47439:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAGTTAATTAATTG+TGG + chr1.4:51776186-51776205 MS.gene47439:intron 10.0%
!! AAAAAAAGTTAATTAATTGT+GGG + chr1.4:51776187-51776206 MS.gene47439:intron 10.0%
!! AATTCCAAATAATAAATATT+TGG + chr1.4:51776775-51776794 MS.gene47439:intron 10.0%
!!! AAAAAATTTCTTTTTTTTTG+GGG + chr1.4:51775149-51775168 MS.gene47439:intron 10.0%
!!! AAAAATACTACTATTTTTTT+AGG + chr1.4:51775250-51775269 MS.gene47439:intron 10.0%
!!! AAAATACTACTATTTTTTTA+GGG + chr1.4:51775251-51775270 MS.gene47439:intron 10.0%
!!! AACAATTTCATTTTATTTTT+TGG + chr1.4:51775280-51775299 MS.gene47439:intron 10.0%
!!! ACAATTTCATTTTATTTTTT+GGG + chr1.4:51775281-51775300 MS.gene47439:intron 10.0%
!!! CAATTAATTAACTTTTTTTT+AGG - chr1.4:51776186-51776205 None:intergenic 10.0%
!!! CATATAAAAATTTCATTTTT+TGG + chr1.4:51775336-51775355 MS.gene47439:intron 10.0%
!!! GATTTTTTTTTAACTTTATT+TGG + chr1.4:51776413-51776432 MS.gene47439:intron 10.0%
!!! TAAATGATGTATAATTTTAT+AGG - chr1.4:51776806-51776825 None:intergenic 10.0%
!!! TAATTTTTAAAATGTCAATT+AGG + chr1.4:51778386-51778405 MS.gene47439:intron 10.0%
!!! TAATTTTTTGTTTTAGATTT+TGG + chr1.4:51778929-51778948 MS.gene47439:intron 10.0%
!!! TGAAAAAATTTCATTTTTTA+TGG + chr1.4:51775200-51775219 MS.gene47439:intron 10.0%
!!! TTTAAATACAGAATAAATTT+TGG - chr1.4:51778986-51779005 None:intergenic 10.0%
!!! TTTTCAGAAAAAATATTTAT+TGG - chr1.4:51778898-51778917 None:intergenic 10.0%
!! AAAATTATTTAGTATACGAT+TGG + chr1.4:51775886-51775905 MS.gene47439:intron 15.0%
!! ATGATAAAATATAGAACTAT+AGG + chr1.4:51779024-51779043 MS.gene47439:intron 15.0%
!! ATTAAAATCACATACTTATA+TGG - chr1.4:51776338-51776357 None:intergenic 15.0%
!! CTTAATGATTATAAAGATAT+GGG - chr1.4:51775057-51775076 None:intergenic 15.0%
!! TCTTAATGATTATAAAGATA+TGG - chr1.4:51775058-51775077 None:intergenic 15.0%
!! TTAAAACAAGTTATGTAAAA+GGG + chr1.4:51775089-51775108 MS.gene47439:intron 15.0%
!! TTATTATACATCAATTAAGT+AGG + chr1.4:51776051-51776070 MS.gene47439:intron 15.0%
!!! AAATAATTTTTTTTACCTGA+GGG - chr1.4:51775876-51775895 None:intergenic 15.0%
!!! ATAAAAATTTCATTTTTTGG+AGG + chr1.4:51775339-51775358 MS.gene47439:intron 15.0%
!!! CAATTTCATTTTATTTTTTG+GGG + chr1.4:51775282-51775301 MS.gene47439:intron 15.0%
!!! GTCATAACAAATTTTTTTTT+GGG + chr1.4:51775222-51775241 MS.gene47439:intron 15.0%
!!! TAAAAATTTCATTTTTTGGA+GGG + chr1.4:51775340-51775359 MS.gene47439:intron 15.0%
!!! TAAATAATTTTTTTTACCTG+AGG - chr1.4:51775877-51775896 None:intergenic 15.0%
!!! TTGTTGACTAAAATATAAAA+GGG + chr1.4:51776558-51776577 MS.gene47439:intron 15.0%
!!! TTTGTTGACTAAAATATAAA+AGG + chr1.4:51776557-51776576 MS.gene47439:intron 15.0%
!! AACATACTACAAATTAGAAT+AGG - chr1.4:51776273-51776292 None:intergenic 20.0%
!! AAGTTAGTTAATAGTTAGTT+AGG - chr1.4:51777867-51777886 None:intergenic 20.0%
!! ACAAAAGTAACAAAAGTAAA+AGG - chr1.4:51778797-51778816 None:intergenic 20.0%
!! ATTCAATCAACTAGTAATAA+AGG - chr1.4:51778196-51778215 None:intergenic 20.0%
!! CTTAAAACAAGTTATGTAAA+AGG + chr1.4:51775088-51775107 MS.gene47439:intron 20.0%
!! GTGTCCAAATATTTATTATT+TGG - chr1.4:51776782-51776801 None:intergenic 20.0%
!!! AAATAAGTTTTGAATTGCAT+TGG - chr1.4:51778558-51778577 None:intergenic 20.0%
!!! AACTTGTTTTAAGTAATGTA+GGG - chr1.4:51775081-51775100 None:intergenic 20.0%
!!! GGTCATAACAAATTTTTTTT+TGG + chr1.4:51775221-51775240 MS.gene47439:intron 20.0%
!!! GTGTAACTTTTAAAAAACTA+AGG + chr1.4:51775966-51775985 MS.gene47439:intron 20.0%
!!! TAACTTGTTTTAAGTAATGT+AGG - chr1.4:51775082-51775101 None:intergenic 20.0%
!!! TAACTTTTAAAAAACTAAGG+TGG + chr1.4:51775969-51775988 MS.gene47439:intron 20.0%
!!! TATATGATTTCAAAAGTGTA+GGG - chr1.4:51776498-51776517 None:intergenic 20.0%
!!! TTATATGATTTCAAAAGTGT+AGG - chr1.4:51776499-51776518 None:intergenic 20.0%
! AAAGCAACTAAATACATGTT+TGG - chr1.4:51776020-51776039 None:intergenic 25.0%
! AACTTAATCATCATGTTACT+TGG - chr1.4:51775714-51775733 None:intergenic 25.0%
! AATGATTATAAAGATATGGG+AGG - chr1.4:51775054-51775073 None:intergenic 25.0%
! ACAAAATTTGTAATGCTTGA+AGG + chr1.4:51777262-51777281 MS.gene47439:intron 25.0%
! ACTAAAATATAAAAGGGTCT+TGG + chr1.4:51776564-51776583 MS.gene47439:intron 25.0%
! ATACCTTGACTAAAAATAGT+TGG - chr1.4:51777670-51777689 None:intergenic 25.0%
! ATTTCCAACAATCATCTATT+GGG - chr1.4:51775500-51775519 None:intergenic 25.0%
! CACACAGAAAATATTAACTT+TGG - chr1.4:51777209-51777228 None:intergenic 25.0%
! GAATAATAAATGCTAAGAGA+AGG - chr1.4:51776933-51776952 None:intergenic 25.0%
! GATTATAGTATGTCATATTC+TGG + chr1.4:51779163-51779182 MS.gene47439:CDS 25.0%
! TTATACAAAATGAACCACTT+TGG + chr1.4:51775679-51775698 MS.gene47439:CDS 25.0%
!! ATATGATTTCAAAAGTGTAG+GGG - chr1.4:51776497-51776516 None:intergenic 25.0%
!! ATTTTCTGTGTGAACAAATA+AGG + chr1.4:51777217-51777236 MS.gene47439:intron 25.0%
AAAAAGGGTTACAAGAGAAT+GGG - chr1.4:51779236-51779255 None:intergenic 30.0%
AAAGAGCTAAGAAAGAAACA+GGG - chr1.4:51774996-51775015 None:intergenic 30.0%
AAATATAAAAGGGTCTTGGA+TGG + chr1.4:51776568-51776587 MS.gene47439:intron 30.0%
AAATTCCTATTGTTCTTTGC+AGG + chr1.4:51775394-51775413 MS.gene47439:intron 30.0%
AACATAAGAGTCCAACAAAA+AGG - chr1.4:51779252-51779271 None:intergenic 30.0%
AAGACTAAACGAAACTTAAG+GGG + chr1.4:51776612-51776631 MS.gene47439:intron 30.0%
AAGGATATGCTTAGAAAAGA+AGG - chr1.4:51778177-51778196 None:intergenic 30.0%
AATAGCTACAAAACCATTGA+TGG + chr1.4:51775753-51775772 MS.gene47439:CDS 30.0%
ACAAGACTAAACGAAACTTA+AGG + chr1.4:51776610-51776629 MS.gene47439:intron 30.0%
ACACTTCCTCTAATTTGATT+TGG - chr1.4:51776659-51776678 None:intergenic 30.0%
ACATAAGAGTCCAACAAAAA+GGG - chr1.4:51779251-51779270 None:intergenic 30.0%
ACATTGTTGCAAAACAAAAG+AGG + chr1.4:51777833-51777852 MS.gene47439:intron 30.0%
AGAAAAGAAGGAAAAGCAAA+AGG - chr1.4:51778165-51778184 None:intergenic 30.0%
AGTAAGAAGAGAGAAAAATG+AGG - chr1.4:51774965-51774984 None:intergenic 30.0%
ATTTACCACTTGAACTTAGA+AGG - chr1.4:51777086-51777105 None:intergenic 30.0%
CAAGACTAAACGAAACTTAA+GGG + chr1.4:51776611-51776630 MS.gene47439:intron 30.0%
CATTAGAGAAATACAGTACA+TGG + chr1.4:51776744-51776763 MS.gene47439:intron 30.0%
CATTTCCAACAATCATCTAT+TGG - chr1.4:51775501-51775520 None:intergenic 30.0%
CCAAATGAACACTAAAAACT+TGG - chr1.4:51778233-51778252 None:intergenic 30.0%
GAAAAGAAGGAAAAGCAAAA+GGG - chr1.4:51778164-51778183 None:intergenic 30.0%
GAACTAATTGTTGACCAAAA+TGG - chr1.4:51777555-51777574 None:intergenic 30.0%
GATATGGGAGGAAAAAAAAA+TGG - chr1.4:51775042-51775061 None:intergenic 30.0%
GCAACAATGTTAGTTATCTT+TGG - chr1.4:51777823-51777842 None:intergenic 30.0%
GTAAGAAGAGAGAAAAATGA+GGG - chr1.4:51774964-51774983 None:intergenic 30.0%
TCACATACTTATATGGTAGA+AGG - chr1.4:51776331-51776350 None:intergenic 30.0%
TTATGTAAAAGGGTAGATCT+GGG + chr1.4:51775099-51775118 MS.gene47439:intron 30.0%
! ACAATAGCATTCAACCATTT+TGG + chr1.4:51777538-51777557 MS.gene47439:CDS 30.0%
! CACTTCCTCTAATTTGATTT+GGG - chr1.4:51776658-51776677 None:intergenic 30.0%
! GAACAATGATTTTACGAGAT+GGG + chr1.4:51777615-51777634 MS.gene47439:CDS 30.0%
! TGAACAATGATTTTACGAGA+TGG + chr1.4:51777614-51777633 MS.gene47439:CDS 30.0%
! TTTTCAACATCATGTATGAC+AGG + chr1.4:51775471-51775490 MS.gene47439:CDS 30.0%
!! GAGCTAGATTTTGAAAATCA+AGG - chr1.4:51777776-51777795 None:intergenic 30.0%
!! TAGGATTTCTAGTCTTACAA+TGG + chr1.4:51778101-51778120 MS.gene47439:CDS 30.0%
!! TATCTTAAAGTACCAGGTTT+TGG - chr1.4:51775654-51775673 None:intergenic 30.0%
!! TTGTAGCTTGTTCAAAATCA+TGG - chr1.4:51775945-51775964 None:intergenic 30.0%
!! TTTGTTGATTCAGGTGATAA+GGG + chr1.4:51778030-51778049 MS.gene47439:CDS 30.0%
!!! CCAAGTTTTTAGTGTTCATT+TGG + chr1.4:51778230-51778249 MS.gene47439:intron 30.0%
!!! TTTTGTTGATTCAGGTGATA+AGG + chr1.4:51778029-51778048 MS.gene47439:CDS 30.0%
AAGAGAGAAAAATGAGGGTT+TGG - chr1.4:51774959-51774978 None:intergenic 35.0%
AAGAGCTAAGAAAGAAACAG+GGG - chr1.4:51774995-51775014 None:intergenic 35.0%
ACTTTCCTGCAAAGAACAAT+AGG - chr1.4:51775402-51775421 None:intergenic 35.0%
AGTAAATTACTGTTCTCTCC+TGG + chr1.4:51778851-51778870 MS.gene47439:intron 35.0%
AGTATACGATTGGTATCACT+GGG + chr1.4:51775896-51775915 MS.gene47439:intron 35.0%
CAAAAAGGGTTACAAGAGAA+TGG - chr1.4:51779237-51779256 None:intergenic 35.0%
CAAAGAGCTAAGAAAGAAAC+AGG - chr1.4:51774997-51775016 None:intergenic 35.0%
CATAACGAGGTTATGTTACT+AGG + chr1.4:51777475-51777494 MS.gene47439:CDS 35.0%
CATGACCCAAATCAAATTAG+AGG + chr1.4:51776650-51776669 MS.gene47439:intron 35.0%
CTAACTTTATCTCTGATGCA+AGG + chr1.4:51777880-51777899 MS.gene47439:intron 35.0%
CTAGTAACATAACCTCGTTA+TGG - chr1.4:51777477-51777496 None:intergenic 35.0%
GAAACCCAATAGATGATTGT+TGG + chr1.4:51775493-51775512 MS.gene47439:CDS 35.0%
GAAATCTGAAGGTGATGTTA+TGG + chr1.4:51777993-51778012 MS.gene47439:CDS 35.0%
GAGATGGAATCTCAATATTC+GGG + chr1.4:51777341-51777360 MS.gene47439:CDS 35.0%
GATAAGATAACAAGTCTTCC+AGG - chr1.4:51778872-51778891 None:intergenic 35.0%
GATACCATAGAGAACTAACT+TGG + chr1.4:51775016-51775035 MS.gene47439:intron 35.0%
GGAGATGGAATCTCAATATT+CGG + chr1.4:51777340-51777359 MS.gene47439:CDS 35.0%
GGTTTAATAGACGTCGTTAT+GGG + chr1.4:51777412-51777431 MS.gene47439:CDS 35.0%
GTTATGTAAAAGGGTAGATC+TGG + chr1.4:51775098-51775117 MS.gene47439:intron 35.0%
TAAAATCATTGTTCACCACG+TGG - chr1.4:51777609-51777628 None:intergenic 35.0%
TAAATGCTAAGAGAAGGTCT+TGG - chr1.4:51776927-51776946 None:intergenic 35.0%
TAGTATACGATTGGTATCAC+TGG + chr1.4:51775895-51775914 MS.gene47439:intron 35.0%
TATTCGGGTCAAAAGACATA+TGG + chr1.4:51777356-51777375 MS.gene47439:CDS 35.0%
TGATGTTCCATGGTTGAAAA+AGG - chr1.4:51774827-51774846 None:intergenic 35.0%
TTAGGAAAATGCAGGTTGTT+TGG - chr1.4:51774789-51774808 None:intergenic 35.0%
TTATTCTACCATTGCACATG+TGG + chr1.4:51776947-51776966 MS.gene47439:intron 35.0%
! AAATGTGTTGATGAATGAGC+AGG + chr1.4:51779095-51779114 MS.gene47439:intron 35.0%
! AATGTGTTGATGAATGAGCA+GGG + chr1.4:51779096-51779115 MS.gene47439:intron 35.0%
! ACTGCATATCTTAAAGTACC+AGG - chr1.4:51775660-51775679 None:intergenic 35.0%
! GGATTTAGAACAGAATCAGA+CGG + chr1.4:51777319-51777338 MS.gene47439:CDS 35.0%
! GTGTATTTAGAACCACAGTA+GGG - chr1.4:51778327-51778346 None:intergenic 35.0%
! GTTCTAAATCCATAGTGTTC+TGG - chr1.4:51777310-51777329 None:intergenic 35.0%
! TCTCTTGTAACCCTTTTTGT+TGG + chr1.4:51779238-51779257 MS.gene47439:CDS 35.0%
! TGTGTATTTAGAACCACAGT+AGG - chr1.4:51778328-51778347 None:intergenic 35.0%
! TTGGAACAATGTAGGTTTTG+TGG - chr1.4:51774940-51774959 None:intergenic 35.0%
! TTTTGCCTTCTAAGTTCAAG+TGG + chr1.4:51777078-51777097 MS.gene47439:intron 35.0%
!! CTCTAATTTGATTTGGGTCA+TGG - chr1.4:51776652-51776671 None:intergenic 35.0%
!!! GGACCAACTATTTTTAGTCA+AGG + chr1.4:51777664-51777683 MS.gene47439:CDS 35.0%
!!! GGAGCTTTTTTTGTTGATTC+AGG + chr1.4:51778021-51778040 MS.gene47439:CDS 35.0%
AAGAAAGAAACAGGGGAGAA+AGG - chr1.4:51774988-51775007 None:intergenic 40.0%
AGATGGGAGATGTATGCTAT+TGG + chr1.4:51777631-51777650 MS.gene47439:CDS 40.0%
AGGTTAGCAGATTGTGCTAT+AGG + chr1.4:51775549-51775568 MS.gene47439:CDS 40.0%
ATGAGCAGGGACAATAATCT+AGG + chr1.4:51779109-51779128 MS.gene47439:intron 40.0%
ATGGTGTGAGAAATGGTTGT+TGG - chr1.4:51777458-51777477 None:intergenic 40.0%
ATGTATGCTATTGGTGGAAG+CGG + chr1.4:51777640-51777659 MS.gene47439:CDS 40.0%
CAAAATGCCAAAGGAGGAAA+AGG + chr1.4:51775579-51775598 MS.gene47439:CDS 40.0%
CGGTTTAATAGACGTCGTTA+TGG + chr1.4:51777411-51777430 MS.gene47439:CDS 40.0%
CTTGGAAACACAATCCAAAG+TGG - chr1.4:51775696-51775715 None:intergenic 40.0%
GAAATCCTATCAGCAGCTTT+AGG - chr1.4:51778090-51778109 None:intergenic 40.0%
GCTGATGTTCATATTGTTGG+TGG + chr1.4:51775783-51775802 MS.gene47439:CDS 40.0%
GGAATCATGTACCAGAATCA+CGG - chr1.4:51775999-51776018 None:intergenic 40.0%
GGGACAATAATCTAGGAATG+TGG + chr1.4:51779116-51779135 MS.gene47439:intron 40.0%
GGTTAGCAGATTGTGCTATA+GGG + chr1.4:51775550-51775569 MS.gene47439:CDS 40.0%
TAGCGAGATTAGGAAAATGC+AGG - chr1.4:51774797-51774816 None:intergenic 40.0%
TATCTCTGATGCAAGGTAAC+CGG + chr1.4:51777887-51777906 MS.gene47439:intron 40.0%
TCGTGGAATTGGAAATCTGA+AGG + chr1.4:51777982-51778001 MS.gene47439:CDS 40.0%
TCTCTCAAATGTCATTGTCG+CGG + chr1.4:51776155-51776174 MS.gene47439:intron 40.0%
TGCTAACCTTTGACGATTGT+TGG - chr1.4:51775538-51775557 None:intergenic 40.0%
TGTGTACCTGTGAACTTCTA+AGG - chr1.4:51774899-51774918 None:intergenic 40.0%
TTGATCCTAAAGCTGCTGAT+AGG + chr1.4:51778082-51778101 MS.gene47439:CDS 40.0%
TTTGGACAAAATGCCAAAGG+AGG + chr1.4:51775573-51775592 MS.gene47439:CDS 40.0%
! ATGAGGGTTTGGAACAATGT+AGG - chr1.4:51774948-51774967 None:intergenic 40.0%
! ATGGCCAAGTTAGTTCTCTA+TGG - chr1.4:51775023-51775042 None:intergenic 40.0%
! GATGTTCATATTGTTGGTGG+TGG + chr1.4:51775786-51775805 MS.gene47439:CDS 40.0%
! TACAAAACCATTGATGGTCG+TGG + chr1.4:51775759-51775778 MS.gene47439:CDS 40.0%
!! ACTTCTAAGGCAACAGATTC+AGG - chr1.4:51774886-51774905 None:intergenic 40.0%
!! CTTCTAAGGCAACAGATTCA+GGG - chr1.4:51774885-51774904 None:intergenic 40.0%
!! GGTGCTGATGTTCATATTGT+TGG + chr1.4:51775780-51775799 MS.gene47439:CDS 40.0%
!! GGTTAAGCATTGATGTTCCA+TGG - chr1.4:51774837-51774856 None:intergenic 40.0%
!!! CTTTGCTCCTTTTTCAACCA+TGG + chr1.4:51774817-51774836 MS.gene47439:CDS 40.0%
AATGCCAAAGGAGGAAAAGG+TGG + chr1.4:51775582-51775601 MS.gene47439:CDS 45.0%
ACACTCTCACGTTGCAAAGA+CGG + chr1.4:51777391-51777410 MS.gene47439:CDS 45.0%
AGAACAGAATCAGACGGAGA+TGG + chr1.4:51777325-51777344 MS.gene47439:CDS 45.0%
AGGAGCAAAGTAGCGAGATT+AGG - chr1.4:51774807-51774826 None:intergenic 45.0%
ATTGGGCCAACAATCGTCAA+AGG + chr1.4:51775529-51775548 MS.gene47439:CDS 45.0%
CAGATTGTCCACATGTGCAA+TGG - chr1.4:51776958-51776977 None:intergenic 45.0%
CCATTTCTCACACCATAACG+AGG + chr1.4:51777462-51777481 MS.gene47439:CDS 45.0%
CCTCGTTATGGTGTGAGAAA+TGG - chr1.4:51777465-51777484 None:intergenic 45.0%
CTATAATCACCACCACCGTT+TGG - chr1.4:51779151-51779170 None:intergenic 45.0%
CTCTCAAATGTCATTGTCGC+GGG + chr1.4:51776156-51776175 MS.gene47439:intron 45.0%
CTGTTGCCTTAGAAGTTCAC+AGG + chr1.4:51774890-51774909 MS.gene47439:CDS 45.0%
GAAGGTGATGTTATGGCGAA+TGG + chr1.4:51778000-51778019 MS.gene47439:CDS 45.0%
GATGCAAGGTAACCGGTATA+CGG + chr1.4:51777894-51777913 MS.gene47439:intron 45.0%
GATGCTGTCAATCCAAAACC+TGG + chr1.4:51775639-51775658 MS.gene47439:CDS 45.0%
GATTCAGGTGATAAGGGTGA+AGG + chr1.4:51778036-51778055 MS.gene47439:CDS 45.0%
GCAGATTGTGCTATAGGGTT+TGG + chr1.4:51775555-51775574 MS.gene47439:CDS 45.0%
GGGTTTGGACAAAATGCCAA+AGG + chr1.4:51775570-51775589 MS.gene47439:CDS 45.0%
GTTACTTGCATTCCTGAGTC+TGG - chr1.4:51777520-51777539 None:intergenic 45.0%
GTTCATCATTGTCATCCCTC+AGG + chr1.4:51775858-51775877 MS.gene47439:CDS 45.0%
TCTCAAATGTCATTGTCGCG+GGG + chr1.4:51776157-51776176 MS.gene47439:intron 45.0%
TGGGAGATGTATGCTATTGG+TGG + chr1.4:51777634-51777653 MS.gene47439:CDS 45.0%
TGTATGCTATTGGTGGAAGC+GGG + chr1.4:51777641-51777660 MS.gene47439:CDS 45.0%
TTCAGAGAATGCCACGTTGT+AGG + chr1.4:51777572-51777591 MS.gene47439:CDS 45.0%
TTGGAAATGCGACCCAGATT+GGG + chr1.4:51775512-51775531 MS.gene47439:CDS 45.0%
! GATTTTCGTCAACCCTACTG+TGG + chr1.4:51778312-51778331 MS.gene47439:intron 45.0%
! TTCCTGAGTCTGGTTTGTAG+TGG - chr1.4:51777510-51777529 None:intergenic 45.0%
! TTGGGTCATGGCCTCTTTTA+GGG - chr1.4:51776640-51776659 None:intergenic 45.0%
! TTTGCCACCTTTTCCTCCTT+TGG - chr1.4:51775589-51775608 None:intergenic 45.0%
! TTTGGGTCATGGCCTCTTTT+AGG - chr1.4:51776641-51776660 None:intergenic 45.0%
!! ATGTGGACAAGAGCACCAAA+CGG + chr1.4:51779133-51779152 MS.gene47439:CDS 45.0%
!! TCTAGTCTTACAATGGCTGC+TGG + chr1.4:51778108-51778127 MS.gene47439:CDS 45.0%
!! ATTCAAATTAATAAAAATAA+AGG + chr1.4:51778665-51778684 MS.gene47439:intron 5.0%
!!! AAAAAAATTTCTTTTTTTTT+GGG + chr1.4:51775148-51775167 MS.gene47439:intron 5.0%
!!! TAAAAAAATTTCTTTTTTTT+TGG + chr1.4:51775147-51775166 MS.gene47439:intron 5.0%
AAGGCAACAGATTCAGGGTC+TGG - chr1.4:51774880-51774899 None:intergenic 50.0%
ACAATGGCTGCTGGTGTTCT+TGG + chr1.4:51778117-51778136 MS.gene47439:CDS 50.0%
AGAATGCCACGTTGTAGGCT+CGG + chr1.4:51777577-51777596 MS.gene47439:CDS 50.0%
ATCAGCACCACGACCATCAA+TGG - chr1.4:51775769-51775788 None:intergenic 50.0%
ATGCTTAACCTCACTCTCCC+TGG + chr1.4:51774847-51774866 MS.gene47439:CDS 50.0%
ATGTATCCGAGCCTACAACG+TGG - chr1.4:51777586-51777605 None:intergenic 50.0%
CGTTCGAGTCCAGAACACTA+TGG + chr1.4:51777298-51777317 MS.gene47439:CDS 50.0%
GAAGCAAGTGACGAAGAGGT+TGG + chr1.4:51777936-51777955 MS.gene47439:CDS 50.0%
GACCACTACAAACCAGACTC+AGG + chr1.4:51777505-51777524 MS.gene47439:CDS 50.0%
GACGATTGTTGGCCCAATCT+GGG - chr1.4:51775527-51775546 None:intergenic 50.0%
GTATGCTATTGGTGGAAGCG+GGG + chr1.4:51777642-51777661 MS.gene47439:CDS 50.0%
GTGACGAAGAGGTTGGATTC+TGG + chr1.4:51777943-51777962 MS.gene47439:CDS 50.0%
GTTGGAAATGCGACCCAGAT+TGG + chr1.4:51775511-51775530 MS.gene47439:CDS 50.0%
TATGCTATTGGTGGAAGCGG+GGG + chr1.4:51777643-51777662 MS.gene47439:CDS 50.0%
TGACGATTGTTGGCCCAATC+TGG - chr1.4:51775528-51775547 None:intergenic 50.0%
TGGATTCTGGTGACAGCGAA+TGG + chr1.4:51777956-51777975 MS.gene47439:CDS 50.0%
! CTGGTTTGTAGTGGTCACTG+TGG - chr1.4:51777501-51777520 None:intergenic 50.0%
! GCGAATGGACTTCGTGGAAT+TGG + chr1.4:51777971-51777990 MS.gene47439:CDS 50.0%
! TGCAACGTGAGAGTGTGCAA+TGG - chr1.4:51777387-51777406 None:intergenic 50.0%
! TGGGTCATGGCCTCTTTTAG+GGG - chr1.4:51776639-51776658 None:intergenic 50.0%
!! CTGGTGTTCTTGGTGTTGCT+AGG + chr1.4:51778127-51778146 MS.gene47439:CDS 50.0%
AAGGTGGATCGCCGTGATTC+TGG + chr1.4:51775985-51776004 MS.gene47439:intron 55.0%
ACGCGAAGCAAGTGACGAAG+AGG + chr1.4:51777932-51777951 MS.gene47439:CDS 55.0%
CAGGGTCTGGATGTTGACCA+GGG - chr1.4:51774867-51774886 None:intergenic 55.0%
CATCCTCAGGAGCCGTATAC+CGG - chr1.4:51777909-51777928 None:intergenic 55.0%
CTTAAGGGGCCCCCTAAAAG+AGG + chr1.4:51776626-51776645 MS.gene47439:intron 55.0%
GATGTTGACCAGGGAGAGTG+AGG - chr1.4:51774858-51774877 None:intergenic 55.0%
TAACCGGTATACGGCTCCTG+AGG + chr1.4:51777903-51777922 MS.gene47439:CDS 55.0%
TAGGCTCGGATACATCCACG+TGG + chr1.4:51777591-51777610 MS.gene47439:CDS 55.0%
TCAGGGTCTGGATGTTGACC+AGG - chr1.4:51774868-51774887 None:intergenic 55.0%
TGCTTCGCGTCAACATCCTC+AGG - chr1.4:51777922-51777941 None:intergenic 55.0%
! GGGTCATGGCCTCTTTTAGG+GGG - chr1.4:51776638-51776657 None:intergenic 55.0%
! GTGACAGCGAATGGACTTCG+TGG + chr1.4:51777965-51777984 MS.gene47439:CDS 55.0%
!! ACAAGAGCACCAAACGGTGG+TGG + chr1.4:51779139-51779158 MS.gene47439:CDS 55.0%
!! TGGACAAGAGCACCAAACGG+TGG + chr1.4:51779136-51779155 MS.gene47439:CDS 55.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 51774781 51779297 51774781 ID=MS.gene47439
chr1.4 mRNA 51774781 51779297 51774781 ID=MS.gene47439.t1;Parent=MS.gene47439
chr1.4 exon 51774781 51774911 51774781 ID=MS.gene47439.t1.exon1;Parent=MS.gene47439.t1
chr1.4 CDS 51774781 51774911 51774781 ID=cds.MS.gene47439.t1;Parent=MS.gene47439.t1
chr1.4 exon 51775416 51775879 51775416 ID=MS.gene47439.t1.exon2;Parent=MS.gene47439.t1
chr1.4 CDS 51775416 51775879 51775416 ID=cds.MS.gene47439.t1;Parent=MS.gene47439.t1
chr1.4 exon 51777284 51777685 51777284 ID=MS.gene47439.t1.exon3;Parent=MS.gene47439.t1
chr1.4 CDS 51777284 51777685 51777284 ID=cds.MS.gene47439.t1;Parent=MS.gene47439.t1
chr1.4 exon 51777902 51778148 51777902 ID=MS.gene47439.t1.exon4;Parent=MS.gene47439.t1
chr1.4 CDS 51777902 51778148 51777902 ID=cds.MS.gene47439.t1;Parent=MS.gene47439.t1
chr1.4 exon 51779117 51779297 51779117 ID=MS.gene47439.t1.exon5;Parent=MS.gene47439.t1
chr1.4 CDS 51779117 51779297 51779117 ID=cds.MS.gene47439.t1;Parent=MS.gene47439.t1
Gene Sequence

>MS.gene47439

ATGTTCCAAACAACCTGCATTTTCCTAATCTCGCTACTTTGCTCCTTTTTCAACCATGGAACATCAATGCTTAACCTCACTCTCCCTGGTCAACATCCAGACCCTGAATCTGTTGCCTTAGAAGTTCACAGGTACACAAATGCTTCTCACTACTCACCACAAAACCTACATTGTTCCAAACCCTCATTTTTCTCTCTTCTTACTCCTTTCTCCCCTGTTTCTTTCTTAGCTCTTTGATACCATAGAGAACTAACTTGGCCATTTTTTTTTCCTCCCATATCTTTATAATCATTAAGACCCTACATTACTTAAAACAAGTTATGTAAAAGGGTAGATCTGGGTCATAAAAAACATCTTTTTTTTTATTAAAAAAATTTCTTTTTTTTTGGGGTCACTAAAAAATGAAATTTTTGAGTCATTGAAAAAATTTCATTTTTTATGGTCATAACAAATTTTTTTTTGGGTCTTAAAAAATACTACTATTTTTTTAGGGTCACTAAACAATTTCATTTTATTTTTTGGGGTCATTAAGAAGTTTCATTCTTTTTTTTGTATCATATAAAAATTTCATTTTTTGGAGGGTATGTAGCAAAAGATTTATCTAATGTTTAAGAAATTCCTATTGTTCTTTGCAGGAAAGTGAATGTTTCAATGTTAAGAAGAGAAATGCTATCAATATCAAACAAAGAGTTTTCAACATCATGTATGACAGGAAACCCAATAGATGATTGTTGGAAATGCGACCCAGATTGGGCCAACAATCGTCAAAGGTTAGCAGATTGTGCTATAGGGTTTGGACAAAATGCCAAAGGAGGAAAAGGTGGCAAATTTTACATTGTCACAGATTCTTCAGACAATGATGCTGTCAATCCAAAACCTGGTACTTTAAGATATGCAGTTATACAAAATGAACCACTTTGGATTGTGTTTCCAAGTAACATGATGATTAAGTTGTCTCAAGAGCTTATTTTTAATAGCTACAAAACCATTGATGGTCGTGGTGCTGATGTTCATATTGTTGGTGGTGGTTGCATCACTCTTCAGTATATAAGTAATGTTATTATACATAACATTCATGTTCATCATTGTCATCCCTCAGGTAAAAAAAATTATTTAGTATACGATTGGTATCACTGGGTGTATCAAAATCACGACGACTCGCCATGATTTTGAACAAGCTACAAAGTGTAACTTTTAAAAAACTAAGGTGGATCGCCGTGATTCTGGTACATGATTCCAAACATGTATTTAGTTGCTTTATTTTCACTTTTTATTATACATCAATTAAGTAGGAGCAATATACTAATTTTTCGTTTCTCTTTTTGTTTGTTTGCACTTCTTTTGATGTGTATTGTAATTGTAATGCACGCTTTTTCTCTCAAATGTCATTGTCGCGGGGTAACCTAAAAAAAAGTTAATTAATTGTGGGTTACATTTTTTAGAAAGCATCTCTTTACTTTTAAAAACTACATAAACTTTAGACTAAAGACCTATTCTAATTTGTAGTATGTTGCTCTATTGATTTTAGTTCTAATAGTTATTTTAGTCCTTCTACCATATAAGTATGTGATTTTAATTTTTCAATACATTTTAAACATTTTTGTCTATTGATTTTAATTTATTTCATTTATTGATTTTTTTTTAACTTTATTTGGTCAAAATTTACTAATGAAAAAAAAGTTATATCAGTCTTAAAATAAATTTCAATTTTTTCCCCTACACTTTTGAAATCATATAATACTTTATTTACTAAAAATAAAAATGAAATGATATGTTTTTGTTGACTAAAATATAAAAGGGTCTTGGATGGAAAGAGATTGTATTTGTTGACAAGACTAAACGAAACTTAAGGGGCCCCCTAAAAGAGGCCATGACCCAAATCAAATTAGAGGAAGTGTAATTAAGACAAAAACATATACTTTATTTTTTAAAATGCATCTTAATCTTAATAATTTACATTTAGCATTAGAGAAATACAGTACATGGTTGATTGAAATTCCAAATAATAAATATTTGGACACACCTATAAAATTATACATCATTTAGTTAGTTTAAAAATATGCATCATTAATATTTTATTTCTTTTTTCTACTTTTATTCTTTCATGTGTGTCTAAATGTTGTTTTCAAATCTTTTGACTATGCCAAGACCTTCTCTTAGCATTTATTATTCTACCATTGCACATGTGGACAATCTGACTTTTTTTCTCATTCTCTCATCTGACAGAATTTGTTAAGAGACAATGACAATACTAATATTTTCATTCTTTAAAAAAAAACACTACTCAATATTGCTGATTTTGCCTTCTAAGTTCAAGTGGTAAATAATGTACATCACAATTTTTTCAAATGTTACAAAATTGTACATAAACAAAACAAAAGTAGAAAACTTCAGATTTTTTATAGTTAAACAGAACAAAAGTCATCCAAAGTTAATATTTTCTGTGTGAACAAATAAGGATTTCATATTTTTTGTATACTAACAAAATTTGTAATGCTTGAAGGTAACACTAACGTGCGTTCGAGTCCAGAACACTATGGATTTAGAACAGAATCAGACGGAGATGGAATCTCAATATTCGGGTCAAAAGACATATGGATAGACCATTGCACACTCTCACGTTGCAAAGACGGTTTAATAGACGTCGTTATGGGTTCATCAGCAATAACAATCTCCAACAACCATTTCTCACACCATAACGAGGTTATGTTACTAGGCCACAGTGACCACTACAAACCAGACTCAGGAATGCAAGTAACAATAGCATTCAACCATTTTGGTCAACAATTAGTTCAGAGAATGCCACGTTGTAGGCTCGGATACATCCACGTGGTGAACAATGATTTTACGAGATGGGAGATGTATGCTATTGGTGGAAGCGGGGGACCAACTATTTTTAGTCAAGGTATTATAGATTTTGTGCATATTTGATATCACGATCACTTTGTTGTCATAATAATGACTTTGTCATAATGTCACAATCGCGATGATACCTTGATTTTCAAAATCTAGCTCGTGATTCTGACATATCTACTGATACCAAAGATAACTAACATTGTTGCAAAACAAAAGAGGATAACTAACCTAACTAACTATTAACTAACTTTATCTCTGATGCAAGGTAACCGGTATACGGCTCCTGAGGATGTTGACGCGAAGCAAGTGACGAAGAGGTTGGATTCTGGTGACAGCGAATGGACTTCGTGGAATTGGAAATCTGAAGGTGATGTTATGGCGAATGGAGCTTTTTTTGTTGATTCAGGTGATAAGGGTGAAGGTAGTTTTCAGAAAGCTTATAGTGTTGATCCTAAAGCTGCTGATAGGATTTCTAGTCTTACAATGGCTGCTGGTGTTCTTGGTGTTGCTAGGTACTTTACTTTCCCTTTTGCTTTTCCTTCTTTTCTAAGCATATCCTTTATTACTAGTTGATTGAATGCTTTATTGCTAAACCAAGTTTTTAGTGTTCATTTGGATTCGAGATGAGTTTGACAAATTTGCGTATTTGTAATTTTGTAAAAGCTACACTTTGAAGATTTTCGTCAACCCTACTGTGGTTCTAAATACACACTTAATCTTTTATTTAATATTTATTGAGTTTAGTCTCTTAATTTTTAAAATGTCAATTAGGTTTCTTATTTTATTAAGTTTCAGTTTAATTTTTAAGTTTTGAAAAAAATTCAGAAAGATCTTTTATCTTTTATTTTGTAAAAGTTATAGTAATAATGTATTTTTTTTTTTGTTTTGAAATGATTTTTTTATTTCACAAGACTTATTCCAATGCAATTCAAAACTTATTTTGCAAAACTTATTTTTAAGCATTAATAATCATATTGAATAAAAAATTAGAATAAGAGATTTAATTAAAACTTATGAACAATTAAAAAATTCAAATTAATAAAAATAAAGGATAAAAATGCATTTTAGTCTATCTATTCATTATTTACTGAATCAATATGAATCTCACTCAAAACTAATCTTCAAAGATCCTACTTGATTGCTTCTGATACTTTTTGCCTTTTACTTTTGTTACTTTTGTCGTTTTATAACTGTATGTGTTGTACAAAGAAAACAGTAAATTACTGTTCTCTCCTGGAAGACTTGTTATCTTATCTAACCAATAAATATTTTTTCTGAAAACAAAACACATTTAATTTTTTGTTTTAGATTTTGGTACAAATAATTGAATTAAAAAAAAATAAAGTCCAAAATTTATTCTGTATTTAAAAGAATTTATTTTGTCTAGATGATAAAATATAGAACTATAGGTAGTATTTTTTTTGACAAAACAAGACAATAGTACTTTGTCTAAATATAAAATGTGTTGATGAATGAGCAGGGACAATAATCTAGGAATGTGGACAAGAGCACCAAACGGTGGTGGTGATTATAGTATGTCATATTCTGGAGAAGAAGAGTACACAGATGACATGTCAAAGAGTACAATGTTGTTGACCCATTCTCTTGTAACCCTTTTTGTTGGACTCTTATGTTTGTTGTCCCTAACCATAGATCTTTAA
Protein sequence

>MS.gene47439.t1

MFQTTCIFLISLLCSFFNHGTSMLNLTLPGQHPDPESVALEVHRKVNVSMLRREMLSISNKEFSTSCMTGNPIDDCWKCDPDWANNRQRLADCAIGFGQNAKGGKGGKFYIVTDSSDNDAVNPKPGTLRYAVIQNEPLWIVFPSNMMIKLSQELIFNSYKTIDGRGADVHIVGGGCITLQYISNVIIHNIHVHHCHPSGNTNVRSSPEHYGFRTESDGDGISIFGSKDIWIDHCTLSRCKDGLIDVVMGSSAITISNNHFSHHNEVMLLGHSDHYKPDSGMQVTIAFNHFGQQLVQRMPRCRLGYIHVVNNDFTRWEMYAIGGSGGPTIFSQGNRYTAPEDVDAKQVTKRLDSGDSEWTSWNWKSEGDVMANGAFFVDSGDKGEGSFQKAYSVDPKAADRISSLTMAAGVLGVARDNNLGMWTRAPNGGGDYSMSYSGEEEYTDDMSKSTMLLTHSLVTLFVGLLCLLSLTIDL