Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27011.t1 | XP_003589345.1 | 98 | 401 | 4 | 3 | 1 | 398 | 1 | 400 | 2.00E-213 | 751.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27011.t1 | Q94AP3 | 74.1 | 402 | 87 | 5 | 1 | 398 | 1 | 389 | 4.8e-160 | 565.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27011.t1 | G7I5V7 | 98.0 | 401 | 4 | 3 | 1 | 398 | 1 | 400 | 1.4e-213 | 751.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049133 | MS.gene27011 | 0.832026 | 1.20E-55 | -1.69E-46 |
| MS.gene049418 | MS.gene27011 | 0.855765 | 5.06E-62 | -1.69E-46 |
| MS.gene049660 | MS.gene27011 | 0.808664 | 2.77E-50 | -1.69E-46 |
| MS.gene049989 | MS.gene27011 | 0.839046 | 2.00E-57 | -1.69E-46 |
| MS.gene050297 | MS.gene27011 | 0.838369 | 3.00E-57 | -1.69E-46 |
| MS.gene05054 | MS.gene27011 | 0.801792 | 7.62E-49 | -1.69E-46 |
| MS.gene051067 | MS.gene27011 | 0.802248 | 6.14E-49 | -1.69E-46 |
| MS.gene051263 | MS.gene27011 | 0.840417 | 8.80E-58 | -1.69E-46 |
| MS.gene051423 | MS.gene27011 | 0.816902 | 4.35E-52 | -1.69E-46 |
| MS.gene051478 | MS.gene27011 | 0.828859 | 7.11E-55 | -1.69E-46 |
| MS.gene051629 | MS.gene27011 | 0.803909 | 2.78E-49 | -1.69E-46 |
| MS.gene051648 | MS.gene27011 | 0.801349 | 9.39E-49 | -1.69E-46 |
| MS.gene051742 | MS.gene27011 | 0.810268 | 1.25E-50 | -1.69E-46 |
| MS.gene052367 | MS.gene27011 | 0.840774 | 7.10E-58 | -1.69E-46 |
| MS.gene053417 | MS.gene27011 | 0.803747 | 3.01E-49 | -1.69E-46 |
| MS.gene053500 | MS.gene27011 | 0.833076 | 6.56E-56 | -1.69E-46 |
| MS.gene054614 | MS.gene27011 | 0.842705 | 2.20E-58 | -1.69E-46 |
| MS.gene055957 | MS.gene27011 | 0.824084 | 9.77E-54 | -1.69E-46 |
| MS.gene056041 | MS.gene27011 | 0.82828 | 9.81E-55 | -1.69E-46 |
| MS.gene056042 | MS.gene27011 | 0.813723 | 2.22E-51 | -1.69E-46 |
| MS.gene056228 | MS.gene27011 | 0.805914 | 1.06E-49 | -1.69E-46 |
| MS.gene056704 | MS.gene27011 | 0.803542 | 3.32E-49 | -1.69E-46 |
| MS.gene056870 | MS.gene27011 | 0.805576 | 1.25E-49 | -1.69E-46 |
| MS.gene05709 | MS.gene27011 | 0.812793 | 3.54E-51 | -1.69E-46 |
| MS.gene058196 | MS.gene27011 | 0.800969 | 1.12E-48 | -1.69E-46 |
| MS.gene058197 | MS.gene27011 | 0.826663 | 2.40E-54 | -1.69E-46 |
| MS.gene058198 | MS.gene27011 | 0.827662 | 1.38E-54 | -1.69E-46 |
| MS.gene05866 | MS.gene27011 | 0.829238 | 5.76E-55 | -1.69E-46 |
| MS.gene059163 | MS.gene27011 | 0.826259 | 2.99E-54 | -1.69E-46 |
| MS.gene059164 | MS.gene27011 | 0.815094 | 1.10E-51 | -1.69E-46 |
| MS.gene059300 | MS.gene27011 | 0.83429 | 3.27E-56 | -1.69E-46 |
| MS.gene060473 | MS.gene27011 | 0.833613 | 4.82E-56 | -1.69E-46 |
| MS.gene060565 | MS.gene27011 | 0.821549 | 3.81E-53 | -1.69E-46 |
| MS.gene06057 | MS.gene27011 | 0.829968 | 3.83E-55 | -1.69E-46 |
| MS.gene060825 | MS.gene27011 | 0.801105 | 1.05E-48 | -1.69E-46 |
| MS.gene061260 | MS.gene27011 | 0.815962 | 7.06E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27011.t1 | MTR_1g023180 | 98.005 | 401 | 4 | 3 | 1 | 398 | 1 | 400 | 0.0 | 787 |
| MS.gene27011.t1 | MTR_3g112480 | 82.045 | 401 | 62 | 6 | 1 | 398 | 1 | 394 | 0.0 | 635 |
| MS.gene27011.t1 | MTR_3g112480 | 79.878 | 328 | 57 | 5 | 74 | 398 | 18 | 339 | 2.37e-180 | 505 |
| MS.gene27011.t1 | MTR_3g112480 | 79.121 | 273 | 48 | 5 | 129 | 398 | 1 | 267 | 3.20e-144 | 410 |
| MS.gene27011.t1 | MTR_6g081840 | 56.793 | 368 | 124 | 3 | 30 | 397 | 19 | 351 | 6.03e-141 | 406 |
| MS.gene27011.t1 | MTR_5g021160 | 54.090 | 379 | 145 | 4 | 16 | 389 | 2 | 356 | 1.46e-136 | 395 |
| MS.gene27011.t1 | MTR_5g021160 | 52.189 | 297 | 113 | 4 | 99 | 390 | 2 | 274 | 6.64e-100 | 298 |
| MS.gene27011.t1 | MTR_5g021160 | 55.926 | 270 | 103 | 1 | 16 | 285 | 2 | 255 | 3.41e-98 | 294 |
| MS.gene27011.t1 | MTR_5g025340 | 38.544 | 371 | 222 | 3 | 18 | 386 | 7 | 373 | 5.44e-85 | 264 |
| MS.gene27011.t1 | MTR_5g025290 | 41.618 | 346 | 190 | 5 | 18 | 359 | 8 | 345 | 6.28e-84 | 261 |
| MS.gene27011.t1 | MTR_5g025290 | 40.947 | 359 | 194 | 7 | 11 | 359 | 23 | 373 | 1.36e-83 | 261 |
| MS.gene27011.t1 | MTR_5g025400 | 40.000 | 365 | 209 | 4 | 23 | 385 | 13 | 369 | 6.84e-82 | 256 |
| MS.gene27011.t1 | MTR_5g025330 | 37.562 | 402 | 213 | 7 | 18 | 397 | 6 | 391 | 1.54e-81 | 261 |
| MS.gene27011.t1 | MTR_5g025370 | 39.554 | 359 | 205 | 4 | 18 | 374 | 7 | 355 | 3.65e-81 | 254 |
| MS.gene27011.t1 | MTR_8g072350 | 38.192 | 343 | 206 | 4 | 18 | 359 | 6 | 343 | 2.23e-78 | 247 |
| MS.gene27011.t1 | MTR_1g030580 | 38.162 | 359 | 195 | 3 | 1 | 357 | 1 | 334 | 1.27e-77 | 245 |
| MS.gene27011.t1 | MTR_1g074160 | 34.903 | 361 | 207 | 4 | 18 | 373 | 10 | 347 | 1.90e-76 | 241 |
| MS.gene27011.t1 | MTR_8g041390 | 38.261 | 345 | 192 | 4 | 18 | 358 | 10 | 337 | 2.73e-76 | 242 |
| MS.gene27011.t1 | MTR_1g074120 | 34.530 | 362 | 210 | 3 | 18 | 375 | 13 | 351 | 3.11e-76 | 240 |
| MS.gene27011.t1 | MTR_3g072500 | 35.735 | 347 | 207 | 2 | 18 | 364 | 17 | 347 | 4.40e-76 | 241 |
| MS.gene27011.t1 | MTR_1g074070 | 35.262 | 363 | 208 | 4 | 18 | 376 | 13 | 352 | 8.57e-76 | 239 |
| MS.gene27011.t1 | MTR_1g030600 | 38.372 | 344 | 195 | 3 | 23 | 365 | 20 | 347 | 1.30e-75 | 240 |
| MS.gene27011.t1 | MTR_3g072530 | 37.681 | 345 | 189 | 4 | 18 | 357 | 11 | 334 | 1.50e-74 | 236 |
| MS.gene27011.t1 | MTR_1g051120 | 34.167 | 360 | 216 | 4 | 9 | 365 | 2 | 343 | 2.30e-74 | 236 |
| MS.gene27011.t1 | MTR_1g038560 | 34.637 | 358 | 210 | 4 | 24 | 381 | 6 | 339 | 5.13e-73 | 231 |
| MS.gene27011.t1 | MTR_0096s0100 | 36.066 | 366 | 211 | 4 | 1 | 365 | 1 | 344 | 7.55e-73 | 232 |
| MS.gene27011.t1 | MTR_6g036450 | 36.080 | 352 | 207 | 4 | 15 | 365 | 10 | 344 | 1.01e-72 | 231 |
| MS.gene27011.t1 | MTR_2g016710 | 34.795 | 342 | 203 | 2 | 18 | 359 | 5 | 326 | 3.32e-72 | 230 |
| MS.gene27011.t1 | MTR_1g073990 | 36.338 | 355 | 200 | 4 | 18 | 368 | 13 | 345 | 7.43e-72 | 229 |
| MS.gene27011.t1 | MTR_3g012420 | 37.931 | 348 | 186 | 3 | 18 | 358 | 14 | 338 | 9.96e-72 | 230 |
| MS.gene27011.t1 | MTR_3g072560 | 37.389 | 337 | 187 | 2 | 23 | 357 | 20 | 334 | 1.04e-70 | 228 |
| MS.gene27011.t1 | MTR_1g074020 | 34.278 | 353 | 205 | 5 | 18 | 366 | 10 | 339 | 2.70e-70 | 225 |
| MS.gene27011.t1 | MTR_1g068630 | 36.127 | 346 | 190 | 3 | 18 | 357 | 12 | 332 | 1.56e-68 | 221 |
| MS.gene27011.t1 | MTR_7g111830 | 34.731 | 334 | 207 | 1 | 24 | 357 | 10 | 332 | 2.47e-68 | 221 |
| MS.gene27011.t1 | MTR_2g065550 | 36.170 | 376 | 213 | 7 | 24 | 391 | 13 | 369 | 5.40e-68 | 219 |
| MS.gene27011.t1 | MTR_1g070175 | 32.286 | 350 | 209 | 2 | 18 | 364 | 13 | 337 | 5.45e-68 | 219 |
| MS.gene27011.t1 | MTR_8g006010 | 34.748 | 377 | 221 | 6 | 18 | 393 | 7 | 359 | 1.49e-67 | 219 |
| MS.gene27011.t1 | MTR_4g106720 | 33.724 | 341 | 207 | 3 | 25 | 364 | 15 | 337 | 1.90e-67 | 218 |
| MS.gene27011.t1 | MTR_2g007990 | 34.456 | 386 | 228 | 4 | 10 | 388 | 4 | 371 | 9.03e-66 | 214 |
| MS.gene27011.t1 | MTR_1g114210 | 34.940 | 332 | 197 | 3 | 26 | 357 | 16 | 328 | 1.48e-65 | 213 |
| MS.gene27011.t1 | MTR_3g095460 | 34.066 | 364 | 195 | 4 | 23 | 371 | 7 | 340 | 3.41e-65 | 211 |
| MS.gene27011.t1 | MTR_7g100050 | 35.588 | 340 | 190 | 4 | 24 | 357 | 16 | 332 | 6.60e-65 | 212 |
| MS.gene27011.t1 | MTR_3g072520 | 37.278 | 338 | 195 | 2 | 23 | 359 | 11 | 332 | 2.23e-64 | 211 |
| MS.gene27011.t1 | MTR_1g030400 | 32.622 | 328 | 209 | 2 | 30 | 357 | 16 | 331 | 6.76e-63 | 206 |
| MS.gene27011.t1 | MTR_8g092650 | 34.821 | 336 | 207 | 2 | 23 | 358 | 7 | 330 | 7.12e-63 | 206 |
| MS.gene27011.t1 | MTR_2g016710 | 33.648 | 318 | 191 | 2 | 18 | 335 | 5 | 302 | 5.82e-61 | 200 |
| MS.gene27011.t1 | MTR_8g006120 | 35.735 | 347 | 204 | 3 | 12 | 357 | 1 | 329 | 8.56e-61 | 201 |
| MS.gene27011.t1 | MTR_3g095420 | 32.840 | 338 | 209 | 5 | 23 | 357 | 9 | 331 | 2.37e-60 | 199 |
| MS.gene27011.t1 | MTR_3g090550 | 34.688 | 320 | 188 | 3 | 38 | 357 | 23 | 321 | 3.73e-60 | 198 |
| MS.gene27011.t1 | MTR_3g095450 | 33.531 | 337 | 208 | 3 | 23 | 357 | 7 | 329 | 2.64e-59 | 197 |
| MS.gene27011.t1 | MTR_8g006090 | 34.853 | 373 | 214 | 4 | 24 | 395 | 14 | 358 | 9.52e-59 | 195 |
| MS.gene27011.t1 | MTR_4g129650 | 32.632 | 380 | 223 | 7 | 24 | 398 | 11 | 362 | 2.32e-58 | 194 |
| MS.gene27011.t1 | MTR_5g034990 | 35.227 | 352 | 204 | 3 | 11 | 360 | 2 | 331 | 5.54e-58 | 193 |
| MS.gene27011.t1 | MTR_2g027030 | 35.329 | 334 | 200 | 2 | 26 | 359 | 17 | 334 | 7.04e-58 | 193 |
| MS.gene27011.t1 | MTR_2g007260 | 36.826 | 334 | 200 | 2 | 26 | 359 | 19 | 341 | 2.46e-56 | 190 |
| MS.gene27011.t1 | MTR_2g007970 | 34.000 | 350 | 213 | 2 | 26 | 375 | 17 | 348 | 7.23e-56 | 189 |
| MS.gene27011.t1 | MTR_2g007960 | 35.294 | 340 | 210 | 2 | 24 | 363 | 15 | 344 | 4.78e-55 | 186 |
| MS.gene27011.t1 | MTR_3g072500 | 37.308 | 260 | 147 | 2 | 105 | 364 | 1 | 244 | 3.13e-54 | 181 |
| MS.gene27011.t1 | MTR_8g006050 | 32.923 | 325 | 184 | 4 | 52 | 373 | 25 | 318 | 1.44e-53 | 181 |
| MS.gene27011.t1 | MTR_5g034910 | 30.086 | 349 | 224 | 3 | 18 | 365 | 4 | 333 | 3.59e-52 | 177 |
| MS.gene27011.t1 | MTR_4g094342 | 32.653 | 343 | 218 | 2 | 10 | 352 | 2 | 331 | 1.70e-51 | 176 |
| MS.gene27011.t1 | MTR_2g102340 | 32.153 | 339 | 202 | 3 | 26 | 359 | 17 | 332 | 1.96e-51 | 176 |
| MS.gene27011.t1 | MTR_3g072500 | 34.902 | 255 | 150 | 2 | 18 | 272 | 17 | 255 | 2.03e-51 | 174 |
| MS.gene27011.t1 | MTR_3g095440 | 31.751 | 337 | 214 | 3 | 23 | 357 | 7 | 329 | 3.79e-51 | 175 |
| MS.gene27011.t1 | MTR_5g034980 | 30.448 | 335 | 211 | 5 | 26 | 358 | 12 | 326 | 3.11e-50 | 172 |
| MS.gene27011.t1 | MTR_4g094362 | 29.223 | 373 | 247 | 2 | 26 | 397 | 19 | 375 | 6.97e-50 | 172 |
| MS.gene27011.t1 | MTR_8g006090 | 35.526 | 304 | 168 | 3 | 92 | 395 | 3 | 278 | 4.04e-49 | 167 |
| MS.gene27011.t1 | MTR_3g019050 | 31.180 | 356 | 226 | 3 | 21 | 376 | 18 | 354 | 9.69e-49 | 170 |
| MS.gene27011.t1 | MTR_5g068790 | 29.032 | 372 | 243 | 3 | 21 | 386 | 18 | 374 | 2.37e-48 | 169 |
| MS.gene27011.t1 | MTR_3g072530 | 33.442 | 308 | 141 | 4 | 18 | 282 | 11 | 297 | 2.64e-48 | 166 |
| MS.gene27011.t1 | MTR_1g014510 | 32.738 | 336 | 207 | 3 | 25 | 358 | 15 | 333 | 8.49e-48 | 169 |
| MS.gene27011.t1 | MTR_1g074160 | 33.210 | 271 | 154 | 3 | 18 | 284 | 10 | 257 | 2.34e-47 | 163 |
| MS.gene27011.t1 | MTR_4g094360 | 30.060 | 336 | 220 | 1 | 24 | 359 | 17 | 337 | 4.57e-47 | 166 |
| MS.gene27011.t1 | MTR_5g069040 | 28.760 | 379 | 255 | 3 | 21 | 398 | 18 | 382 | 7.05e-47 | 165 |
| MS.gene27011.t1 | MTR_4g094352 | 31.510 | 384 | 237 | 5 | 24 | 398 | 15 | 381 | 9.76e-47 | 164 |
| MS.gene27011.t1 | MTR_8g006090 | 35.783 | 313 | 182 | 3 | 24 | 335 | 14 | 308 | 1.90e-46 | 162 |
| MS.gene27011.t1 | MTR_5g034930 | 30.746 | 335 | 210 | 6 | 26 | 358 | 11 | 325 | 6.10e-46 | 161 |
| MS.gene27011.t1 | MTR_8g092650 | 34.601 | 263 | 160 | 2 | 96 | 358 | 2 | 252 | 1.61e-44 | 155 |
| MS.gene27011.t1 | MTR_5g034970 | 30.925 | 346 | 204 | 6 | 16 | 359 | 2 | 314 | 3.90e-43 | 154 |
| MS.gene27011.t1 | MTR_0103s0090 | 31.548 | 336 | 207 | 4 | 25 | 358 | 15 | 329 | 6.15e-43 | 154 |
| MS.gene27011.t1 | MTR_4g094340 | 29.679 | 374 | 227 | 8 | 15 | 378 | 3 | 350 | 6.72e-42 | 151 |
| MS.gene27011.t1 | MTR_4g094340 | 29.679 | 374 | 227 | 8 | 15 | 378 | 21 | 368 | 8.50e-42 | 151 |
| MS.gene27011.t1 | MTR_4g129650 | 30.742 | 283 | 166 | 6 | 118 | 398 | 1 | 255 | 1.52e-40 | 145 |
| MS.gene27011.t1 | MTR_5g089390 | 27.327 | 333 | 219 | 2 | 25 | 357 | 18 | 327 | 8.13e-40 | 145 |
| MS.gene27011.t1 | MTR_4g100840 | 30.347 | 346 | 208 | 9 | 25 | 360 | 18 | 340 | 1.30e-39 | 145 |
| MS.gene27011.t1 | MTR_5g012650 | 30.523 | 344 | 215 | 8 | 18 | 357 | 5 | 328 | 4.50e-38 | 140 |
| MS.gene27011.t1 | MTR_3g072500 | 33.486 | 218 | 129 | 2 | 18 | 235 | 17 | 218 | 9.61e-38 | 136 |
| MS.gene27011.t1 | MTR_4g094360 | 31.418 | 261 | 164 | 2 | 99 | 359 | 45 | 290 | 1.58e-37 | 139 |
| MS.gene27011.t1 | MTR_6g007743 | 28.972 | 321 | 201 | 5 | 41 | 358 | 32 | 328 | 1.83e-37 | 139 |
| MS.gene27011.t1 | MTR_3g095440 | 31.474 | 251 | 156 | 3 | 23 | 271 | 7 | 243 | 3.00e-37 | 136 |
| MS.gene27011.t1 | MTR_4g094340 | 31.930 | 285 | 167 | 4 | 100 | 378 | 21 | 284 | 1.98e-36 | 134 |
| MS.gene27011.t1 | MTR_4g094360 | 27.885 | 312 | 210 | 1 | 24 | 335 | 17 | 313 | 1.99e-36 | 135 |
| MS.gene27011.t1 | MTR_6g007750 | 28.440 | 327 | 198 | 7 | 41 | 358 | 32 | 331 | 2.58e-36 | 136 |
| MS.gene27011.t1 | MTR_0103s0090 | 31.621 | 253 | 154 | 1 | 106 | 358 | 5 | 238 | 6.80e-34 | 127 |
| MS.gene27011.t1 | MTR_1g051120 | 30.435 | 230 | 140 | 3 | 9 | 236 | 2 | 213 | 8.17e-34 | 125 |
| MS.gene27011.t1 | MTR_6g007753 | 28.319 | 339 | 211 | 6 | 64 | 398 | 337 | 647 | 1.95e-33 | 132 |
| MS.gene27011.t1 | MTR_6g007753 | 25.373 | 268 | 172 | 3 | 132 | 398 | 83 | 323 | 3.40e-19 | 90.1 |
| MS.gene27011.t1 | MTR_6g007747 | 29.526 | 359 | 223 | 6 | 41 | 398 | 32 | 361 | 2.09e-33 | 128 |
| MS.gene27011.t1 | MTR_1g051120 | 30.837 | 227 | 137 | 3 | 9 | 233 | 2 | 210 | 3.21e-33 | 125 |
| MS.gene27011.t1 | MTR_6g007757 | 29.769 | 346 | 218 | 5 | 41 | 383 | 32 | 355 | 5.61e-32 | 124 |
| MS.gene27011.t1 | MTR_6g007760 | 25.902 | 305 | 204 | 4 | 35 | 337 | 25 | 309 | 7.87e-32 | 123 |
| MS.gene27011.t1 | MTR_1g052205 | 31.356 | 236 | 132 | 5 | 134 | 365 | 13 | 222 | 4.96e-31 | 119 |
| MS.gene27011.t1 | MTR_6g007740 | 27.893 | 337 | 218 | 6 | 24 | 358 | 15 | 328 | 8.31e-30 | 120 |
| MS.gene27011.t1 | MTR_5g034980 | 29.389 | 262 | 163 | 5 | 26 | 285 | 12 | 253 | 3.12e-29 | 115 |
| MS.gene27011.t1 | MTR_8g006090 | 34.387 | 253 | 147 | 3 | 24 | 275 | 14 | 248 | 4.01e-27 | 109 |
| MS.gene27011.t1 | MTR_2g102340 | 27.925 | 265 | 163 | 3 | 26 | 285 | 43 | 284 | 2.79e-25 | 105 |
| MS.gene27011.t1 | MTR_6g007757 | 28.632 | 234 | 143 | 4 | 41 | 272 | 32 | 243 | 3.70e-20 | 90.1 |
| MS.gene27011.t1 | MTR_4g094342 | 28.761 | 226 | 148 | 2 | 10 | 235 | 2 | 214 | 4.46e-19 | 86.7 |
| MS.gene27011.t1 | MTR_8g006090 | 35.326 | 184 | 101 | 2 | 92 | 275 | 3 | 168 | 4.80e-18 | 82.8 |
| MS.gene27011.t1 | MTR_4g094340 | 26.415 | 265 | 163 | 6 | 15 | 271 | 3 | 243 | 1.33e-17 | 82.4 |
| MS.gene27011.t1 | MTR_4g094340 | 26.415 | 265 | 163 | 6 | 15 | 271 | 21 | 261 | 1.83e-17 | 82.4 |
| MS.gene27011.t1 | MTR_1g068720 | 32.090 | 134 | 88 | 3 | 229 | 359 | 92 | 225 | 3.36e-14 | 72.0 |
| MS.gene27011.t1 | MTR_1g014790 | 34.328 | 134 | 70 | 3 | 100 | 232 | 42 | 158 | 4.33e-14 | 70.9 |
| MS.gene27011.t1 | MTR_4g094348 | 36.296 | 135 | 77 | 1 | 106 | 240 | 7 | 132 | 1.46e-13 | 68.9 |
| MS.gene27011.t1 | MTR_4g094340 | 26.721 | 247 | 132 | 8 | 6 | 232 | 5 | 222 | 3.46e-12 | 65.9 |
| MS.gene27011.t1 | MTR_8g076800 | 29.921 | 127 | 82 | 2 | 209 | 329 | 146 | 271 | 8.74e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27011.t1 | AT1G75500 | 74.378 | 402 | 86 | 6 | 1 | 398 | 1 | 389 | 0.0 | 592 |
| MS.gene27011.t1 | AT1G75500 | 74.378 | 402 | 86 | 6 | 1 | 398 | 1 | 389 | 0.0 | 592 |
| MS.gene27011.t1 | AT3G53210 | 52.480 | 383 | 160 | 3 | 16 | 393 | 4 | 369 | 1.21e-142 | 410 |
| MS.gene27011.t1 | AT3G18200 | 55.135 | 370 | 146 | 2 | 16 | 385 | 29 | 378 | 2.19e-140 | 405 |
| MS.gene27011.t1 | AT3G53210 | 56.877 | 269 | 99 | 2 | 16 | 284 | 4 | 255 | 4.32e-106 | 313 |
| MS.gene27011.t1 | AT3G53210 | 50.165 | 303 | 129 | 3 | 96 | 393 | 27 | 312 | 6.92e-103 | 307 |
| MS.gene27011.t1 | AT3G18200 | 49.627 | 268 | 115 | 2 | 118 | 385 | 1 | 248 | 1.13e-84 | 258 |
| MS.gene27011.t1 | AT4G30420 | 37.596 | 391 | 215 | 7 | 18 | 398 | 5 | 376 | 1.42e-78 | 247 |
| MS.gene27011.t1 | AT4G30420 | 37.922 | 385 | 210 | 7 | 24 | 398 | 1 | 366 | 7.66e-78 | 245 |
| MS.gene27011.t1 | AT5G45370 | 37.845 | 362 | 219 | 3 | 18 | 378 | 16 | 372 | 9.16e-78 | 245 |
| MS.gene27011.t1 | AT5G45370 | 37.845 | 362 | 219 | 3 | 18 | 378 | 16 | 372 | 9.16e-78 | 245 |
| MS.gene27011.t1 | AT5G45370 | 37.396 | 361 | 198 | 2 | 18 | 378 | 16 | 348 | 1.51e-77 | 244 |
| MS.gene27011.t1 | AT3G45870 | 41.667 | 336 | 186 | 3 | 18 | 352 | 8 | 334 | 1.46e-75 | 239 |
| MS.gene27011.t1 | AT5G07050 | 37.110 | 353 | 204 | 3 | 23 | 371 | 19 | 357 | 6.46e-75 | 238 |
| MS.gene27011.t1 | AT2G39510 | 36.765 | 340 | 188 | 3 | 24 | 358 | 10 | 327 | 1.84e-71 | 229 |
| MS.gene27011.t1 | AT1G09380 | 38.138 | 333 | 190 | 2 | 24 | 355 | 10 | 327 | 3.35e-71 | 228 |
| MS.gene27011.t1 | AT1G44800 | 34.174 | 357 | 205 | 3 | 18 | 365 | 7 | 342 | 5.29e-71 | 228 |
| MS.gene27011.t1 | AT4G08290 | 35.092 | 379 | 228 | 2 | 18 | 395 | 9 | 370 | 5.93e-71 | 228 |
| MS.gene27011.t1 | AT4G08300 | 34.181 | 354 | 212 | 3 | 18 | 368 | 7 | 342 | 9.73e-71 | 227 |
| MS.gene27011.t1 | AT2G40900 | 36.494 | 348 | 198 | 2 | 12 | 359 | 1 | 325 | 7.64e-70 | 225 |
| MS.gene27011.t1 | AT1G21890 | 33.791 | 364 | 228 | 2 | 23 | 384 | 12 | 364 | 8.34e-70 | 225 |
| MS.gene27011.t1 | AT3G45870 | 41.066 | 319 | 178 | 3 | 18 | 335 | 8 | 317 | 1.86e-69 | 222 |
| MS.gene27011.t1 | AT4G19185 | 39.118 | 340 | 197 | 4 | 23 | 359 | 22 | 354 | 1.83e-68 | 222 |
| MS.gene27011.t1 | AT3G30340 | 32.845 | 341 | 210 | 3 | 26 | 365 | 15 | 337 | 2.36e-67 | 218 |
| MS.gene27011.t1 | AT2G37460 | 35.180 | 361 | 203 | 6 | 18 | 372 | 11 | 346 | 5.61e-65 | 212 |
| MS.gene27011.t1 | AT1G43650 | 33.708 | 356 | 213 | 4 | 23 | 376 | 8 | 342 | 4.53e-63 | 206 |
| MS.gene27011.t1 | AT5G13670 | 33.333 | 342 | 211 | 3 | 18 | 358 | 4 | 329 | 6.36e-62 | 204 |
| MS.gene27011.t1 | AT4G01440 | 34.663 | 326 | 195 | 2 | 41 | 366 | 29 | 336 | 8.66e-62 | 203 |
| MS.gene27011.t1 | AT4G01430 | 33.631 | 336 | 205 | 3 | 24 | 357 | 11 | 330 | 1.91e-61 | 202 |
| MS.gene27011.t1 | AT1G01070 | 33.623 | 345 | 211 | 2 | 16 | 359 | 10 | 337 | 7.94e-61 | 201 |
| MS.gene27011.t1 | AT1G11450 | 34.718 | 337 | 200 | 3 | 24 | 359 | 18 | 335 | 1.06e-60 | 200 |
| MS.gene27011.t1 | AT3G56620 | 33.721 | 344 | 206 | 2 | 12 | 355 | 1 | 322 | 4.65e-59 | 197 |
| MS.gene27011.t1 | AT1G21890 | 34.603 | 315 | 193 | 2 | 23 | 335 | 12 | 315 | 8.60e-58 | 192 |
| MS.gene27011.t1 | AT3G45870 | 41.636 | 269 | 147 | 3 | 18 | 285 | 8 | 267 | 3.70e-57 | 189 |
| MS.gene27011.t1 | AT1G11450 | 35.806 | 310 | 179 | 3 | 51 | 359 | 1 | 291 | 6.34e-57 | 189 |
| MS.gene27011.t1 | AT4G01440 | 35.254 | 295 | 173 | 2 | 41 | 335 | 29 | 305 | 3.39e-56 | 187 |
| MS.gene27011.t1 | AT1G11450 | 36.213 | 301 | 172 | 3 | 60 | 359 | 3 | 284 | 2.02e-55 | 185 |
| MS.gene27011.t1 | AT1G11460 | 32.938 | 337 | 207 | 2 | 24 | 359 | 18 | 336 | 5.48e-55 | 185 |
| MS.gene27011.t1 | AT4G28040 | 30.612 | 343 | 205 | 4 | 18 | 357 | 4 | 316 | 7.77e-53 | 180 |
| MS.gene27011.t1 | AT4G28040 | 30.612 | 343 | 205 | 4 | 18 | 357 | 4 | 316 | 7.77e-53 | 180 |
| MS.gene27011.t1 | AT4G28040 | 30.612 | 343 | 205 | 4 | 18 | 357 | 4 | 316 | 7.77e-53 | 180 |
| MS.gene27011.t1 | AT4G28040 | 30.612 | 343 | 205 | 4 | 18 | 357 | 4 | 316 | 7.77e-53 | 180 |
| MS.gene27011.t1 | AT4G28040 | 30.612 | 343 | 205 | 4 | 18 | 357 | 4 | 316 | 7.77e-53 | 180 |
| MS.gene27011.t1 | AT5G64700 | 30.641 | 359 | 236 | 4 | 18 | 375 | 4 | 350 | 1.03e-52 | 179 |
| MS.gene27011.t1 | AT4G01430 | 32.803 | 314 | 193 | 3 | 24 | 335 | 11 | 308 | 1.06e-52 | 178 |
| MS.gene27011.t1 | AT1G11450 | 33.546 | 313 | 188 | 2 | 24 | 335 | 18 | 311 | 5.60e-52 | 176 |
| MS.gene27011.t1 | AT5G45370 | 35.636 | 275 | 171 | 3 | 105 | 378 | 1 | 270 | 9.09e-50 | 169 |
| MS.gene27011.t1 | AT5G45370 | 35.636 | 275 | 171 | 3 | 105 | 378 | 1 | 270 | 9.09e-50 | 169 |
| MS.gene27011.t1 | AT1G68170 | 30.366 | 382 | 243 | 3 | 14 | 394 | 5 | 364 | 2.08e-49 | 171 |
| MS.gene27011.t1 | AT1G01070 | 33.788 | 293 | 176 | 2 | 68 | 359 | 15 | 290 | 3.70e-49 | 169 |
| MS.gene27011.t1 | AT2G37450 | 32.665 | 349 | 183 | 8 | 24 | 366 | 11 | 313 | 5.27e-49 | 169 |
| MS.gene27011.t1 | AT4G19185 | 36.567 | 268 | 160 | 4 | 95 | 359 | 16 | 276 | 6.96e-49 | 168 |
| MS.gene27011.t1 | AT1G25270 | 32.440 | 336 | 211 | 2 | 24 | 359 | 5 | 324 | 7.90e-49 | 169 |
| MS.gene27011.t1 | AT1G68170 | 30.997 | 371 | 233 | 3 | 25 | 394 | 6 | 354 | 1.03e-48 | 169 |
| MS.gene27011.t1 | AT4G08290 | 35.821 | 268 | 154 | 2 | 18 | 284 | 9 | 259 | 1.20e-47 | 164 |
| MS.gene27011.t1 | AT4G01450 | 35.535 | 318 | 181 | 2 | 41 | 357 | 29 | 323 | 8.09e-47 | 164 |
| MS.gene27011.t1 | AT5G40210 | 30.882 | 340 | 193 | 7 | 25 | 360 | 16 | 317 | 1.34e-46 | 163 |
| MS.gene27011.t1 | AT3G28130 | 32.558 | 344 | 204 | 10 | 22 | 359 | 13 | 334 | 2.52e-46 | 162 |
| MS.gene27011.t1 | AT1G11450 | 36.398 | 261 | 146 | 3 | 100 | 359 | 2 | 243 | 2.75e-46 | 160 |
| MS.gene27011.t1 | AT5G40240 | 29.917 | 361 | 236 | 4 | 1 | 360 | 13 | 357 | 5.89e-46 | 162 |
| MS.gene27011.t1 | AT5G40240 | 31.157 | 337 | 215 | 4 | 25 | 360 | 23 | 343 | 8.05e-46 | 162 |
| MS.gene27011.t1 | AT5G40240 | 31.157 | 337 | 215 | 4 | 25 | 360 | 23 | 343 | 8.05e-46 | 162 |
| MS.gene27011.t1 | AT4G01450 | 34.797 | 296 | 169 | 2 | 41 | 335 | 29 | 301 | 3.89e-45 | 159 |
| MS.gene27011.t1 | AT3G30340 | 32.184 | 261 | 158 | 3 | 26 | 285 | 15 | 257 | 3.95e-45 | 157 |
| MS.gene27011.t1 | AT4G01440 | 35.918 | 245 | 139 | 2 | 41 | 285 | 29 | 255 | 1.29e-44 | 155 |
| MS.gene27011.t1 | AT3G28100 | 30.312 | 353 | 218 | 8 | 25 | 373 | 17 | 345 | 2.90e-43 | 154 |
| MS.gene27011.t1 | AT3G28050 | 30.749 | 374 | 224 | 10 | 25 | 390 | 15 | 361 | 6.95e-43 | 154 |
| MS.gene27011.t1 | AT5G40230 | 28.649 | 370 | 232 | 6 | 25 | 387 | 24 | 368 | 8.50e-43 | 154 |
| MS.gene27011.t1 | AT3G28130 | 33.463 | 257 | 151 | 6 | 105 | 359 | 10 | 248 | 6.37e-42 | 149 |
| MS.gene27011.t1 | AT3G28130 | 33.463 | 257 | 151 | 6 | 105 | 359 | 10 | 248 | 6.37e-42 | 149 |
| MS.gene27011.t1 | AT3G28070 | 30.147 | 272 | 166 | 5 | 105 | 374 | 8 | 257 | 5.96e-40 | 143 |
| MS.gene27011.t1 | AT1G70260 | 28.371 | 356 | 236 | 4 | 24 | 373 | 14 | 356 | 6.22e-40 | 146 |
| MS.gene27011.t1 | AT3G28080 | 30.117 | 342 | 209 | 7 | 25 | 359 | 17 | 335 | 1.29e-39 | 145 |
| MS.gene27011.t1 | AT3G28070 | 30.147 | 272 | 166 | 5 | 105 | 374 | 100 | 349 | 5.80e-39 | 143 |
| MS.gene27011.t1 | AT3G28080 | 31.128 | 257 | 157 | 4 | 105 | 359 | 8 | 246 | 7.29e-39 | 140 |
| MS.gene27011.t1 | AT3G28080 | 31.128 | 257 | 157 | 4 | 105 | 359 | 8 | 246 | 7.29e-39 | 140 |
| MS.gene27011.t1 | AT3G28080 | 31.128 | 257 | 157 | 4 | 105 | 359 | 8 | 246 | 7.29e-39 | 140 |
| MS.gene27011.t1 | AT3G28080 | 31.128 | 257 | 157 | 4 | 105 | 359 | 8 | 246 | 7.29e-39 | 140 |
| MS.gene27011.t1 | AT4G01440 | 31.557 | 244 | 149 | 2 | 123 | 366 | 3 | 228 | 1.02e-38 | 140 |
| MS.gene27011.t1 | AT4G01440 | 31.557 | 244 | 149 | 2 | 123 | 366 | 3 | 228 | 1.02e-38 | 140 |
| MS.gene27011.t1 | AT4G01450 | 34.553 | 246 | 137 | 2 | 41 | 285 | 29 | 251 | 1.97e-38 | 139 |
| MS.gene27011.t1 | AT3G28080 | 31.128 | 257 | 157 | 4 | 105 | 359 | 89 | 327 | 3.39e-38 | 141 |
| MS.gene27011.t1 | AT3G45870 | 37.727 | 220 | 127 | 3 | 134 | 352 | 49 | 259 | 1.56e-37 | 138 |
| MS.gene27011.t1 | AT5G45370 | 33.607 | 244 | 156 | 3 | 136 | 378 | 74 | 312 | 2.80e-37 | 137 |
| MS.gene27011.t1 | AT5G47470 | 27.401 | 354 | 226 | 6 | 9 | 357 | 17 | 344 | 1.87e-36 | 136 |
| MS.gene27011.t1 | AT5G47470 | 27.401 | 354 | 226 | 6 | 9 | 357 | 45 | 372 | 1.98e-36 | 137 |
| MS.gene27011.t1 | AT5G47470 | 27.401 | 354 | 226 | 6 | 9 | 357 | 45 | 372 | 2.40e-36 | 137 |
| MS.gene27011.t1 | AT1G43650 | 32.061 | 262 | 157 | 3 | 23 | 284 | 8 | 248 | 5.47e-36 | 133 |
| MS.gene27011.t1 | AT2G37450 | 33.459 | 266 | 146 | 6 | 107 | 366 | 1 | 241 | 7.09e-36 | 132 |
| MS.gene27011.t1 | AT4G16620 | 27.451 | 357 | 231 | 5 | 30 | 378 | 20 | 356 | 1.98e-34 | 131 |
| MS.gene27011.t1 | AT4G15540 | 28.056 | 360 | 223 | 5 | 25 | 383 | 20 | 344 | 5.10e-34 | 129 |
| MS.gene27011.t1 | AT4G15540 | 28.056 | 360 | 223 | 5 | 25 | 383 | 20 | 344 | 5.10e-34 | 129 |
| MS.gene27011.t1 | AT4G01450 | 35.514 | 214 | 114 | 2 | 41 | 253 | 29 | 219 | 3.38e-33 | 125 |
| MS.gene27011.t1 | AT3G45870 | 36.453 | 203 | 119 | 3 | 134 | 335 | 49 | 242 | 1.50e-31 | 120 |
| MS.gene27011.t1 | AT3G45870 | 36.453 | 203 | 119 | 3 | 134 | 335 | 49 | 242 | 1.50e-31 | 120 |
| MS.gene27011.t1 | AT1G60050 | 27.301 | 326 | 221 | 3 | 38 | 359 | 29 | 342 | 6.12e-31 | 122 |
| MS.gene27011.t1 | AT5G64700 | 31.967 | 244 | 153 | 4 | 29 | 271 | 15 | 246 | 2.83e-30 | 117 |
| MS.gene27011.t1 | AT3G45870 | 43.662 | 142 | 79 | 1 | 211 | 352 | 43 | 183 | 4.34e-30 | 116 |
| MS.gene27011.t1 | AT3G28130 | 30.837 | 227 | 137 | 6 | 135 | 359 | 1 | 209 | 1.41e-29 | 114 |
| MS.gene27011.t1 | AT4G01430 | 30.769 | 208 | 127 | 2 | 151 | 357 | 2 | 193 | 1.68e-29 | 114 |
| MS.gene27011.t1 | AT3G28070 | 28.755 | 233 | 146 | 4 | 105 | 335 | 100 | 314 | 1.24e-28 | 114 |
| MS.gene27011.t1 | AT3G28070 | 27.273 | 242 | 152 | 5 | 135 | 374 | 1 | 220 | 2.88e-27 | 108 |
| MS.gene27011.t1 | AT2G37450 | 36.301 | 146 | 92 | 1 | 222 | 366 | 129 | 274 | 1.23e-26 | 108 |
| MS.gene27011.t1 | AT3G28080 | 27.753 | 227 | 144 | 4 | 135 | 359 | 1 | 209 | 3.31e-26 | 105 |
| MS.gene27011.t1 | AT4G24980 | 27.726 | 321 | 148 | 7 | 38 | 358 | 3 | 239 | 1.08e-25 | 105 |
| MS.gene27011.t1 | AT4G16620 | 27.240 | 279 | 176 | 4 | 107 | 378 | 1 | 259 | 2.73e-24 | 101 |
| MS.gene27011.t1 | AT4G16620 | 27.240 | 279 | 176 | 4 | 107 | 378 | 1 | 259 | 2.73e-24 | 101 |
| MS.gene27011.t1 | AT3G28130 | 31.660 | 259 | 150 | 9 | 22 | 274 | 13 | 250 | 6.07e-24 | 100 |
| MS.gene27011.t1 | AT3G28100 | 31.102 | 254 | 152 | 6 | 25 | 274 | 17 | 251 | 2.36e-23 | 98.6 |
| MS.gene27011.t1 | AT3G28130 | 37.342 | 158 | 91 | 4 | 22 | 175 | 13 | 166 | 6.43e-21 | 90.9 |
| MS.gene27011.t1 | AT3G28100 | 38.562 | 153 | 90 | 3 | 25 | 175 | 17 | 167 | 1.29e-20 | 90.9 |
| MS.gene27011.t1 | AT4G16620 | 28.889 | 225 | 139 | 3 | 30 | 253 | 20 | 224 | 1.67e-20 | 90.9 |
| MS.gene27011.t1 | AT3G45870 | 35.948 | 153 | 88 | 3 | 134 | 285 | 49 | 192 | 2.65e-19 | 85.9 |
| MS.gene27011.t1 | AT3G45870 | 35.762 | 151 | 87 | 3 | 136 | 285 | 4 | 145 | 3.43e-19 | 84.3 |
| MS.gene27011.t1 | AT3G28080 | 36.646 | 161 | 90 | 4 | 25 | 178 | 17 | 172 | 4.06e-16 | 79.0 |
| MS.gene27011.t1 | AT3G28080 | 33.784 | 74 | 48 | 1 | 286 | 359 | 209 | 281 | 9.78e-11 | 62.8 |
| MS.gene27011.t1 | AT3G28080 | 47.887 | 71 | 37 | 0 | 105 | 175 | 8 | 78 | 2.86e-15 | 74.7 |
| MS.gene27011.t1 | AT3G28080 | 33.784 | 74 | 48 | 1 | 286 | 359 | 120 | 192 | 4.89e-11 | 62.4 |
Find 80 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGATGTCTTTATCTAAT+TGG | 0.160867 | 1.3:+2198067 | MS.gene27011:CDS |
| CCTTCCATTTGCTTATTTCT+TGG | 0.164985 | 1.3:+2196873 | MS.gene27011:CDS |
| ACAGTACCAATGATTGATTT+TGG | 0.182728 | 1.3:+2198004 | MS.gene27011:CDS |
| TATTCTACAATGGCTGATTT+AGG | 0.243865 | 1.3:+2196670 | None:intergenic |
| ACTTCCTATACATGTTTCTT+TGG | 0.256420 | 1.3:+2198166 | MS.gene27011:CDS |
| TTGCATTTGCAGTACAAATA+TGG | 0.283549 | 1.3:+2198392 | MS.gene27011:CDS |
| GCAATTTCTTCTTATTGCTT+TGG | 0.291149 | 1.3:+2198195 | MS.gene27011:CDS |
| ATCATGGCTTCTATTGCTTT+AGG | 0.322920 | 1.3:+2198481 | MS.gene27011:CDS |
| GATGCTTTAGCGTGGCTTGC+GGG | 0.332227 | 1.3:-2199143 | None:intergenic |
| CAGAGGAAGTTTAAATTAAT+CGG | 0.338959 | 1.3:-2197360 | None:intergenic |
| CTAACTAACCGCGTATAAAA+TGG | 0.340348 | 1.3:-2198272 | None:intergenic |
| CCTTTATATTACAGGATCAT+TGG | 0.349819 | 1.3:+2199005 | MS.gene27011:intron |
| AATCAAGGTTTCTATTTGCT+TGG | 0.366777 | 1.3:+2197631 | MS.gene27011:CDS |
| ATTGTTTGTCTTGGTCTGCT+TGG | 0.391168 | 1.3:+2198092 | MS.gene27011:CDS |
| TTGCAGGGAGTGGTGGCATC+TGG | 0.399814 | 1.3:+2198367 | MS.gene27011:intron |
| ATCAAGGTTTCTATTTGCTT+GGG | 0.402879 | 1.3:+2197632 | MS.gene27011:CDS |
| GCCCTGCAGTTTGGTTATGC+TGG | 0.404103 | 1.3:+2196760 | MS.gene27011:CDS |
| CCACTATTTAAGTGACTACT+TGG | 0.407294 | 1.3:-2197947 | None:intergenic |
| TAATTGGACATTGTTTGTCT+TGG | 0.407693 | 1.3:+2198083 | MS.gene27011:CDS |
| GCCATGTTGGCCCTGCAGTT+TGG | 0.410120 | 1.3:+2196751 | MS.gene27011:CDS |
| TGGACTATACTTTGTGTTGT+GGG | 0.419500 | 1.3:+2199046 | MS.gene27011:CDS |
| GACGAGCAGGGTACTTCTTA+AGG | 0.425673 | 1.3:-2198135 | None:intergenic |
| ACATGCAGCTGAAATTTCTC+AGG | 0.434745 | 1.3:-2196727 | None:intergenic |
| GCTACAACAAAAGTTTGAAC+AGG | 0.438205 | 1.3:-2198457 | None:intergenic |
| AACAGGATTACAGCAAATCA+AGG | 0.453990 | 1.3:+2197616 | MS.gene27011:intron |
| GCAATGATGTTCCTATAGAC+AGG | 0.454821 | 1.3:-2196838 | None:intergenic |
| TTGAAAGAAATGCTCAGGCT+TGG | 0.458050 | 1.3:+2198221 | MS.gene27011:CDS |
| CCCTGCCATTACATTTCTCA+TGG | 0.470693 | 1.3:+2197702 | MS.gene27011:CDS |
| TTCAAGAGCTGCACTTAACA+TGG | 0.475828 | 1.3:+2196795 | MS.gene27011:CDS |
| ATTGTCCCAAAATCAATCAT+TGG | 0.477316 | 1.3:-2198010 | None:intergenic |
| CAAATATGGTGCATTGATAG+AGG | 0.486474 | 1.3:+2198406 | MS.gene27011:CDS |
| CCAAGTAGTCACTTAAATAG+TGG | 0.486646 | 1.3:+2197947 | MS.gene27011:CDS |
| GTGAGACTGAATCGAAAAGA+TGG | 0.488376 | 1.3:+2197842 | MS.gene27011:CDS |
| AGGTTTCTATTTGCTTGGGT+TGG | 0.489312 | 1.3:+2197636 | MS.gene27011:CDS |
| GATGGAATTGCTAAAGTAGC+AGG | 0.489379 | 1.3:+2197860 | MS.gene27011:CDS |
| CTGGACTATACTTTGTGTTG+TGG | 0.492738 | 1.3:+2199045 | MS.gene27011:CDS |
| GAGTCCAAAGAAACATGTAT+AGG | 0.500964 | 1.3:-2198170 | None:intergenic |
| TTCTCATGGCAGTCATACTA+AGG | 0.503575 | 1.3:+2197716 | MS.gene27011:CDS |
| TTTAGGAGAAGAGTTCTACT+TGG | 0.503735 | 1.3:+2198498 | MS.gene27011:CDS |
| GAAGTGACAGAAAGACGAGC+AGG | 0.504587 | 1.3:-2198148 | None:intergenic |
| GCCATGAGAAATGTAATGGC+AGG | 0.506658 | 1.3:-2197703 | None:intergenic |
| GATAGAACACCACATTCTCT+TGG | 0.513393 | 1.3:-2196704 | None:intergenic |
| AACCAGCATAACCAAACTGC+AGG | 0.522465 | 1.3:-2196762 | None:intergenic |
| CTACTTGGACTATATATAGT+TGG | 0.532157 | 1.3:-2197932 | None:intergenic |
| GAGAAGAGTTCTACTTGGGC+GGG | 0.532422 | 1.3:+2198503 | MS.gene27011:CDS |
| ATGTCACTTGGTGATGCAAA+GGG | 0.532729 | 1.3:+2198031 | MS.gene27011:CDS |
| TGTATTGCTGATGCAAAGGT+AGG | 0.537203 | 1.3:-2197670 | None:intergenic |
| CCAAGAAATAAGCAAATGGA+AGG | 0.543346 | 1.3:-2196873 | None:intergenic |
| TGATACACTGCAACAAACAC+TGG | 0.547318 | 1.3:-2198433 | None:intergenic |
| TATTAATTTGCAGGGAGTGG+TGG | 0.551473 | 1.3:+2198360 | MS.gene27011:intron |
| TCAGTGATTACATTATATCA+AGG | 0.554127 | 1.3:+2197908 | MS.gene27011:CDS |
| GTATTGCTGATGCAAAGGTA+GGG | 0.556287 | 1.3:-2197669 | None:intergenic |
| TTAGGAGAAGAGTTCTACTT+GGG | 0.557775 | 1.3:+2198499 | MS.gene27011:CDS |
| GCAGGGTACTTCTTAAGGAC+AGG | 0.561869 | 1.3:-2198130 | None:intergenic |
| AGAGAAGAAATTATTTGCAA+AGG | 0.564376 | 1.3:+2199079 | MS.gene27011:CDS |
| TAAAGCAATAGAAGCCATGA+TGG | 0.564411 | 1.3:-2198479 | None:intergenic |
| TCAGCTGCATGTGGCCATGT+TGG | 0.564609 | 1.3:+2196738 | MS.gene27011:CDS |
| ACCAAACTGCAGGGCCAACA+TGG | 0.565314 | 1.3:-2196752 | None:intergenic |
| AATGTCACTTGGTGATGCAA+AGG | 0.570694 | 1.3:+2198030 | MS.gene27011:CDS |
| GGTGCAGTGTTGATAGTAGC+TGG | 0.570883 | 1.3:+2199026 | MS.gene27011:CDS |
| TCTGTTGAAGAAGATAGGAA+TGG | 0.578628 | 1.3:-2199176 | None:intergenic |
| CAGCTTCTTCCAAGAGAATG+TGG | 0.578874 | 1.3:+2196695 | MS.gene27011:CDS |
| TGATGCTTTAGCGTGGCTTG+CGG | 0.596033 | 1.3:-2199144 | None:intergenic |
| CAATGATGTTCCTATAGACA+GGG | 0.596068 | 1.3:-2196837 | None:intergenic |
| GACTGCCATGAGAAATGTAA+TGG | 0.601131 | 1.3:-2197707 | None:intergenic |
| GTTCTGTATTGCTGATGCAA+AGG | 0.604446 | 1.3:-2197674 | None:intergenic |
| AGAAATAAGCAAATGGAAGG+AGG | 0.607370 | 1.3:-2196870 | None:intergenic |
| GGAGAAGAGTTCTACTTGGG+CGG | 0.607421 | 1.3:+2198502 | MS.gene27011:CDS |
| GTGCAGCTCTTGAAACAACA+TGG | 0.618096 | 1.3:-2196786 | None:intergenic |
| AGGAAGTTTAAATTAATCGG+TGG | 0.623492 | 1.3:-2197357 | None:intergenic |
| TCAAGAGCTGCACTTAACAT+GGG | 0.631283 | 1.3:+2196796 | MS.gene27011:CDS |
| GGACTATACTTTGTGTTGTG+GGG | 0.631775 | 1.3:+2199047 | MS.gene27011:CDS |
| AAGTGACAGAAAGACGAGCA+GGG | 0.633913 | 1.3:-2198147 | None:intergenic |
| CCATGAGAAATGTAATGGCA+GGG | 0.635566 | 1.3:-2197702 | None:intergenic |
| TGAGAAATTTCAGCTGCATG+TGG | 0.640532 | 1.3:+2196729 | MS.gene27011:CDS |
| CATGCAGCTGAAATTTCTCA+GGG | 0.657899 | 1.3:-2196726 | None:intergenic |
| TATTGCTGATGCAAAGGTAG+GGG | 0.668908 | 1.3:-2197668 | None:intergenic |
| ATATGGTGCATTGATAGAGG+AGG | 0.677817 | 1.3:+2198409 | MS.gene27011:CDS |
| ACCAGCATAACCAAACTGCA+GGG | 0.678569 | 1.3:-2196761 | None:intergenic |
| GAGTGAGTGATGCTTTAGCG+TGG | 0.695699 | 1.3:-2199151 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTTAATTATATTAAATTA+AGG | + | chr1.3:2197563-2197582 | MS.gene27011:intron | 0.0% |
| !!! | AAATTAATTTTATAAATTAA+AGG | + | chr1.3:2197496-2197515 | MS.gene27011:intron | 0.0% |
| !! | AATAAAAAAAAAAAAAACTG+TGG | - | chr1.3:2196988-2197007 | None:intergenic | 10.0% |
| !! | ATAAATATATAAATGTTAAG+AGG | - | chr1.3:2197041-2197060 | None:intergenic | 10.0% |
| !!! | ACAGTTTTTTTTTTTTTTAT+TGG | + | chr1.3:2196987-2197006 | MS.gene27011:intron | 10.0% |
| !!! | ACTTAGTTAATAATTTTTTA+TGG | - | chr1.3:2197079-2197098 | None:intergenic | 10.0% |
| !!! | CTTAGTTAATAATTTTTTAT+GGG | - | chr1.3:2197078-2197097 | None:intergenic | 10.0% |
| !!! | TAATAACCTTTTATAAAAAT+GGG | + | chr1.3:2197098-2197117 | MS.gene27011:intron | 10.0% |
| !!! | TTTTTTTTTATTAATTTGCA+GGG | + | chr1.3:2198352-2198371 | MS.gene27011:intron | 10.0% |
| !!! | TTTTTTTTTTATTAATTTGC+AGG | + | chr1.3:2198351-2198370 | MS.gene27011:intron | 10.0% |
| !! | ATGAATAAAGTAAAATCAAA+AGG | - | chr1.3:2198974-2198993 | None:intergenic | 15.0% |
| !! | TATCATAAACATTTGAATTA+AGG | - | chr1.3:2198552-2198571 | None:intergenic | 15.0% |
| !! | TGAATAAAGTAAAATCAAAA+GGG | - | chr1.3:2198973-2198992 | None:intergenic | 15.0% |
| !! | TTAATTCAGCATATTATTAA+AGG | - | chr1.3:2197597-2197616 | None:intergenic | 15.0% |
| !!! | ATTTTGCATATGAATTTTTT+TGG | - | chr1.3:2197801-2197820 | None:intergenic | 15.0% |
| !!! | GAAAGATATGTAATTTTATT+GGG | + | chr1.3:2197186-2197205 | MS.gene27011:intron | 15.0% |
| !!! | GTAATAACCTTTTATAAAAA+TGG | + | chr1.3:2197097-2197116 | MS.gene27011:intron | 15.0% |
| !!! | TGAAAGATATGTAATTTTAT+TGG | + | chr1.3:2197185-2197204 | MS.gene27011:intron | 15.0% |
| !! | AATAATATGCTGAATTAAAC+AGG | + | chr1.3:2197599-2197618 | MS.gene27011:intron | 20.0% |
| !! | GTATAATGTACAAAATTTCA+TGG | - | chr1.3:2196951-2196970 | None:intergenic | 20.0% |
| !! | GTATTTACTAAACAACTTAT+CGG | + | chr1.3:2198710-2198729 | MS.gene27011:intron | 20.0% |
| !! | TATTGTCAAAAGTTTCATAT+AGG | + | chr1.3:2197154-2197173 | MS.gene27011:intron | 20.0% |
| !! | TTAAGAGAATATGCTAATTA+AGG | - | chr1.3:2197016-2197035 | None:intergenic | 20.0% |
| !! | TTAATTAGCATATTCTCTTA+AGG | + | chr1.3:2197015-2197034 | MS.gene27011:intron | 20.0% |
| !!! | AAGTTTTTGTTACCTAATTT+AGG | + | chr1.3:2198836-2198855 | MS.gene27011:intron | 20.0% |
| !!! | AGTTTTTGTTACCTAATTTA+GGG | + | chr1.3:2198837-2198856 | MS.gene27011:intron | 20.0% |
| !!! | ATATGCAAAATTTTATCAAC+AGG | + | chr1.3:2197810-2197829 | MS.gene27011:intron | 20.0% |
| !!! | GAAATTTTGTACATTATACA+TGG | + | chr1.3:2196952-2196971 | MS.gene27011:intron | 20.0% |
| !!! | GCATATTATTAAAGGTATAA+AGG | - | chr1.3:2197589-2197608 | None:intergenic | 20.0% |
| !!! | TTTGATTGCGATTTTATTTT+TGG | + | chr1.3:2198744-2198763 | MS.gene27011:intron | 20.0% |
| ! | AATGAAATTGTTAAGAGGAA+TGG | - | chr1.3:2196910-2196929 | None:intergenic | 25.0% |
| ! | AATGATCCTGTAATATAAAG+GGG | - | chr1.3:2199006-2199025 | None:intergenic | 25.0% |
| ! | AGAGAAGAAATTATTTGCAA+AGG | + | chr1.3:2199079-2199098 | MS.gene27011:CDS | 25.0% |
| ! | ATAATACCCCTTTATATTAC+AGG | + | chr1.3:2198997-2199016 | MS.gene27011:intron | 25.0% |
| ! | CAATGATCCTGTAATATAAA+GGG | - | chr1.3:2199007-2199026 | None:intergenic | 25.0% |
| ! | CAGAGGAAGTTTAAATTAAT+CGG | - | chr1.3:2197363-2197382 | None:intergenic | 25.0% |
| ! | GTAACAAAAACTTGATCATA+GGG | - | chr1.3:2198829-2198848 | None:intergenic | 25.0% |
| ! | GTGTTAATGAAATTGTTAAG+AGG | - | chr1.3:2196915-2196934 | None:intergenic | 25.0% |
| ! | TAATTTAAACCTAATAGTCG+TGG | - | chr1.3:2198298-2198317 | None:intergenic | 25.0% |
| ! | TAGGATATACTACTATTGAA+TGG | + | chr1.3:2198895-2198914 | MS.gene27011:intron | 25.0% |
| ! | TCAGTGATTACATTATATCA+AGG | + | chr1.3:2197908-2197927 | MS.gene27011:CDS | 25.0% |
| ! | TTGAAGCAAAAAATCATCAT+AGG | + | chr1.3:2198876-2198895 | MS.gene27011:intron | 25.0% |
| ! | TTGAATTAAGGATCGTAATT+AGG | - | chr1.3:2198540-2198559 | None:intergenic | 25.0% |
| !! | ATATTTAGTTCCCGTTAAAA+TGG | - | chr1.3:2197137-2197156 | None:intergenic | 25.0% |
| !! | GGAACAATATTTTGTGTAAT+TGG | + | chr1.3:2197881-2197900 | MS.gene27011:CDS | 25.0% |
| !! | TATTTAGTTCCCGTTAAAAT+GGG | - | chr1.3:2197136-2197155 | None:intergenic | 25.0% |
| !! | TTTTCCAAGAAATAAGCAAA+TGG | - | chr1.3:2196880-2196899 | None:intergenic | 25.0% |
| AATACCCTTTATCTCACTTT+AGG | - | chr1.3:2198676-2198695 | None:intergenic | 30.0% | |
| AATCAAGGTTTCTATTTGCT+TGG | + | chr1.3:2197631-2197650 | MS.gene27011:CDS | 30.0% | |
| AATGACCTAAAGTGAGATAA+AGG | + | chr1.3:2198668-2198687 | MS.gene27011:intron | 30.0% | |
| ACTTCCTATACATGTTTCTT+TGG | + | chr1.3:2198166-2198185 | MS.gene27011:CDS | 30.0% | |
| AGGAAGTTTAAATTAATCGG+TGG | - | chr1.3:2197360-2197379 | None:intergenic | 30.0% | |
| ATCAAGGTTTCTATTTGCTT+GGG | + | chr1.3:2197632-2197651 | MS.gene27011:CDS | 30.0% | |
| ATGACCTAAAGTGAGATAAA+GGG | + | chr1.3:2198669-2198688 | MS.gene27011:intron | 30.0% | |
| ATTGTCCCAAAATCAATCAT+TGG | - | chr1.3:2198013-2198032 | None:intergenic | 30.0% | |
| CCAATGATCCTGTAATATAA+AGG | - | chr1.3:2199008-2199027 | None:intergenic | 30.0% | |
| CCTTTATATTACAGGATCAT+TGG | + | chr1.3:2199005-2199024 | MS.gene27011:intron | 30.0% | |
| CTACTTGGACTATATATAGT+TGG | - | chr1.3:2197935-2197954 | None:intergenic | 30.0% | |
| CTTGGATGTCTTTATCTAAT+TGG | + | chr1.3:2198067-2198086 | MS.gene27011:CDS | 30.0% | |
| GCAATTTCTTCTTATTGCTT+TGG | + | chr1.3:2198195-2198214 | MS.gene27011:CDS | 30.0% | |
| GGTAACAAAAACTTGATCAT+AGG | - | chr1.3:2198830-2198849 | None:intergenic | 30.0% | |
| GTACAAAATTTCATGGATGA+GGG | - | chr1.3:2196944-2196963 | None:intergenic | 30.0% | |
| GTATCATTACATAAGATACG+TGG | - | chr1.3:2198639-2198658 | None:intergenic | 30.0% | |
| TAAGGATCGTAATTAGGATT+AGG | - | chr1.3:2198534-2198553 | None:intergenic | 30.0% | |
| TAATTGCTTTGTGAGTGTTT+AGG | - | chr1.3:2198587-2198606 | None:intergenic | 30.0% | |
| TAATTGGACATTGTTTGTCT+TGG | + | chr1.3:2198083-2198102 | MS.gene27011:CDS | 30.0% | |
| TGTACAAAATTTCATGGATG+AGG | - | chr1.3:2196945-2196964 | None:intergenic | 30.0% | |
| TTGCATTTGCAGTACAAATA+TGG | + | chr1.3:2198392-2198411 | MS.gene27011:CDS | 30.0% | |
| ! | CATTTTCTGTTGAAGAAGAT+AGG | - | chr1.3:2199184-2199203 | None:intergenic | 30.0% |
| ! | GTTTCTTTTCCTTTTTGTTC+AGG | + | chr1.3:2197325-2197344 | MS.gene27011:intron | 30.0% |
| !! | AACGTGCCCATTTTTATAAA+AGG | - | chr1.3:2197107-2197126 | None:intergenic | 30.0% |
| !! | ACAGTACCAATGATTGATTT+TGG | + | chr1.3:2198004-2198023 | MS.gene27011:CDS | 30.0% |
| !! | CAGTACCAATGATTGATTTT+GGG | + | chr1.3:2198005-2198024 | MS.gene27011:CDS | 30.0% |
| !!! | CGTTTTAGTTCCCATTTTAA+CGG | + | chr1.3:2197123-2197142 | MS.gene27011:intron | 30.0% |
| !!! | GTTTTAGTTCCCATTTTAAC+GGG | + | chr1.3:2197124-2197143 | MS.gene27011:intron | 30.0% |
| !!! | TCTTTTTTCTCGCACTTATT+GGG | + | chr1.3:2197388-2197407 | MS.gene27011:CDS | 30.0% |
| !!! | TTCTTTTTTCTCGCACTTAT+TGG | + | chr1.3:2197387-2197406 | MS.gene27011:CDS | 30.0% |
| !!! | TTTTATTAATTTGCAGGGAG+TGG | + | chr1.3:2198357-2198376 | MS.gene27011:intron | 30.0% |
| AACAGGATTACAGCAAATCA+AGG | + | chr1.3:2197616-2197635 | MS.gene27011:intron | 35.0% | |
| AAGGGAAAAAATTGGACACT+TGG | + | chr1.3:2198049-2198068 | MS.gene27011:CDS | 35.0% | |
| AGAAATAAGCAAATGGAAGG+AGG | - | chr1.3:2196873-2196892 | None:intergenic | 35.0% | |
| ATCATGGCTTCTATTGCTTT+AGG | + | chr1.3:2198481-2198500 | MS.gene27011:CDS | 35.0% | |
| CAATGATGTTCCTATAGACA+GGG | - | chr1.3:2196840-2196859 | None:intergenic | 35.0% | |
| CCAAGAAATAAGCAAATGGA+AGG | - | chr1.3:2196876-2196895 | None:intergenic | 35.0% | |
| CCAAGTAGTCACTTAAATAG+TGG | + | chr1.3:2197947-2197966 | MS.gene27011:CDS | 35.0% | |
| CCACTATTTAAGTGACTACT+TGG | - | chr1.3:2197950-2197969 | None:intergenic | 35.0% | |
| CTAACTAACCGCGTATAAAA+TGG | - | chr1.3:2198275-2198294 | None:intergenic | 35.0% | |
| CTAAGTTCTCACCCTAAATT+AGG | - | chr1.3:2198851-2198870 | None:intergenic | 35.0% | |
| GAGTCCAAAGAAACATGTAT+AGG | - | chr1.3:2198173-2198192 | None:intergenic | 35.0% | |
| GCTACAACAAAAGTTTGAAC+AGG | - | chr1.3:2198460-2198479 | None:intergenic | 35.0% | |
| GTGATGCAAAGGGAAAAAAT+TGG | + | chr1.3:2198041-2198060 | MS.gene27011:CDS | 35.0% | |
| TAAAGCAATAGAAGCCATGA+TGG | - | chr1.3:2198482-2198501 | None:intergenic | 35.0% | |
| TAAGTGCGAGAAAAAAGAAC+TGG | - | chr1.3:2197386-2197405 | None:intergenic | 35.0% | |
| TCTGTTGAAGAAGATAGGAA+TGG | - | chr1.3:2199179-2199198 | None:intergenic | 35.0% | |
| TGGACTATACTTTGTGTTGT+GGG | + | chr1.3:2199046-2199065 | MS.gene27011:CDS | 35.0% | |
| TTAGGAGAAGAGTTCTACTT+GGG | + | chr1.3:2198499-2198518 | MS.gene27011:CDS | 35.0% | |
| TTATGTAATGATACCGCCTT+CGG | + | chr1.3:2198645-2198664 | MS.gene27011:intron | 35.0% | |
| TTTAGGAGAAGAGTTCTACT+TGG | + | chr1.3:2198498-2198517 | MS.gene27011:CDS | 35.0% | |
| ! | AGCTTTCACCATTTTATACG+CGG | + | chr1.3:2198264-2198283 | MS.gene27011:CDS | 35.0% |
| ! | CAAATATGGTGCATTGATAG+AGG | + | chr1.3:2198406-2198425 | MS.gene27011:CDS | 35.0% |
| ! | CCTTCCATTTGCTTATTTCT+TGG | + | chr1.3:2196873-2196892 | MS.gene27011:CDS | 35.0% |
| ! | CTTTTCCTTTTTGTTCAGGA+AGG | + | chr1.3:2197329-2197348 | MS.gene27011:intron | 35.0% |
| !! | AACTTGTTTTCCCTGTCTAT+AGG | + | chr1.3:2196827-2196846 | MS.gene27011:CDS | 35.0% |
| !! | AACTTTTGTTGTAGCCATCA+TGG | + | chr1.3:2198465-2198484 | MS.gene27011:CDS | 35.0% |
| !! | GGTTTTTGAAAGAAATGCTC+AGG | + | chr1.3:2198216-2198235 | MS.gene27011:CDS | 35.0% |
| ACATGCAGCTGAAATTTCTC+AGG | - | chr1.3:2196730-2196749 | None:intergenic | 40.0% | |
| AGGTTTCTATTTGCTTGGGT+TGG | + | chr1.3:2197636-2197655 | MS.gene27011:CDS | 40.0% | |
| ATTGTTTGTCTTGGTCTGCT+TGG | + | chr1.3:2198092-2198111 | MS.gene27011:CDS | 40.0% | |
| CATGCAGCTGAAATTTCTCA+GGG | - | chr1.3:2196729-2196748 | None:intergenic | 40.0% | |
| CCATGAGAAATGTAATGGCA+GGG | - | chr1.3:2197705-2197724 | None:intergenic | 40.0% | |
| CTGGACTATACTTTGTGTTG+TGG | + | chr1.3:2199045-2199064 | MS.gene27011:CDS | 40.0% | |
| GACTGCCATGAGAAATGTAA+TGG | - | chr1.3:2197710-2197729 | None:intergenic | 40.0% | |
| GATAGAACACCACATTCTCT+TGG | - | chr1.3:2196707-2196726 | None:intergenic | 40.0% | |
| GATGGAATTGCTAAAGTAGC+AGG | + | chr1.3:2197860-2197879 | MS.gene27011:CDS | 40.0% | |
| GCAATGATGTTCCTATAGAC+AGG | - | chr1.3:2196841-2196860 | None:intergenic | 40.0% | |
| GGACTATACTTTGTGTTGTG+GGG | + | chr1.3:2199047-2199066 | MS.gene27011:CDS | 40.0% | |
| GTATTGCTGATGCAAAGGTA+GGG | - | chr1.3:2197672-2197691 | None:intergenic | 40.0% | |
| GTGAGACTGAATCGAAAAGA+TGG | + | chr1.3:2197842-2197861 | MS.gene27011:CDS | 40.0% | |
| GTTAGTTAGCCACGACTATT+AGG | + | chr1.3:2198286-2198305 | MS.gene27011:intron | 40.0% | |
| GTTCTGTATTGCTGATGCAA+AGG | - | chr1.3:2197677-2197696 | None:intergenic | 40.0% | |
| TATTGCTGATGCAAAGGTAG+GGG | - | chr1.3:2197671-2197690 | None:intergenic | 40.0% | |
| TCAAGAGCTGCACTTAACAT+GGG | + | chr1.3:2196796-2196815 | MS.gene27011:CDS | 40.0% | |
| TCTGTCCTTCCTGAACAAAA+AGG | - | chr1.3:2197337-2197356 | None:intergenic | 40.0% | |
| TGAGAAATTTCAGCTGCATG+TGG | + | chr1.3:2196729-2196748 | MS.gene27011:CDS | 40.0% | |
| TGATACACTGCAACAAACAC+TGG | - | chr1.3:2198436-2198455 | None:intergenic | 40.0% | |
| TGTATTGCTGATGCAAAGGT+AGG | - | chr1.3:2197673-2197692 | None:intergenic | 40.0% | |
| TTCAAGAGCTGCACTTAACA+TGG | + | chr1.3:2196795-2196814 | MS.gene27011:CDS | 40.0% | |
| TTCTCATGGCAGTCATACTA+AGG | + | chr1.3:2197716-2197735 | MS.gene27011:CDS | 40.0% | |
| TTGAAAGAAATGCTCAGGCT+TGG | + | chr1.3:2198221-2198240 | MS.gene27011:CDS | 40.0% | |
| ! | ATATGGTGCATTGATAGAGG+AGG | + | chr1.3:2198409-2198428 | MS.gene27011:CDS | 40.0% |
| !! | AATGTCACTTGGTGATGCAA+AGG | + | chr1.3:2198030-2198049 | MS.gene27011:CDS | 40.0% |
| !! | ATGTCACTTGGTGATGCAAA+GGG | + | chr1.3:2198031-2198050 | MS.gene27011:CDS | 40.0% |
| !! | TATTAATTTGCAGGGAGTGG+TGG | + | chr1.3:2198360-2198379 | MS.gene27011:intron | 40.0% |
| !!! | GATTTTGGGACAATGTCACT+TGG | + | chr1.3:2198019-2198038 | MS.gene27011:CDS | 40.0% |
| AACCAGCATAACCAAACTGC+AGG | - | chr1.3:2196765-2196784 | None:intergenic | 45.0% | |
| AAGTGACAGAAAGACGAGCA+GGG | - | chr1.3:2198150-2198169 | None:intergenic | 45.0% | |
| ACCAGCATAACCAAACTGCA+GGG | - | chr1.3:2196764-2196783 | None:intergenic | 45.0% | |
| ACTTTAGGTCATTCCGAAGG+CGG | - | chr1.3:2198661-2198680 | None:intergenic | 45.0% | |
| CAGCTTCTTCCAAGAGAATG+TGG | + | chr1.3:2196695-2196714 | MS.gene27011:CDS | 45.0% | |
| CCCTGCCATTACATTTCTCA+TGG | + | chr1.3:2197702-2197721 | MS.gene27011:CDS | 45.0% | |
| CGAGAAAAAAGAACTGGCAG+AGG | - | chr1.3:2197380-2197399 | None:intergenic | 45.0% | |
| CTCACTTTAGGTCATTCCGA+AGG | - | chr1.3:2198664-2198683 | None:intergenic | 45.0% | |
| GCCATGAGAAATGTAATGGC+AGG | - | chr1.3:2197706-2197725 | None:intergenic | 45.0% | |
| GTGCAGCTCTTGAAACAACA+TGG | - | chr1.3:2196789-2196808 | None:intergenic | 45.0% | |
| ! | CAGGCTTGGATTTTTCACTC+TGG | + | chr1.3:2198235-2198254 | MS.gene27011:CDS | 45.0% |
| ! | GCTTGGATTTTTCACTCTGG+TGG | + | chr1.3:2198238-2198257 | MS.gene27011:CDS | 45.0% |
| !!! | ATAATTTTAACAATTTATAT+AGG | - | chr1.3:2197230-2197249 | None:intergenic | 5.0% |
| !!! | TAATTTTAACAATTTATATA+GGG | - | chr1.3:2197229-2197248 | None:intergenic | 5.0% |
| GAAGTGACAGAAAGACGAGC+AGG | - | chr1.3:2198151-2198170 | None:intergenic | 50.0% | |
| GAGAAGAGTTCTACTTGGGC+GGG | + | chr1.3:2198503-2198522 | MS.gene27011:CDS | 50.0% | |
| GAGTGAGTGATGCTTTAGCG+TGG | - | chr1.3:2199154-2199173 | None:intergenic | 50.0% | |
| GGAGAAGAGTTCTACTTGGG+CGG | + | chr1.3:2198502-2198521 | MS.gene27011:CDS | 50.0% | |
| TGATGCTTTAGCGTGGCTTG+CGG | - | chr1.3:2199147-2199166 | None:intergenic | 50.0% | |
| ! | GACGAGCAGGGTACTTCTTA+AGG | - | chr1.3:2198138-2198157 | None:intergenic | 50.0% |
| ! | GCAGGGTACTTCTTAAGGAC+AGG | - | chr1.3:2198133-2198152 | None:intergenic | 50.0% |
| !! | GGTGCAGTGTTGATAGTAGC+TGG | + | chr1.3:2199026-2199045 | MS.gene27011:CDS | 50.0% |
| ACCAAACTGCAGGGCCAACA+TGG | - | chr1.3:2196755-2196774 | None:intergenic | 55.0% | |
| GCCCTGCAGTTTGGTTATGC+TGG | + | chr1.3:2196760-2196779 | MS.gene27011:CDS | 55.0% | |
| TCAGCTGCATGTGGCCATGT+TGG | + | chr1.3:2196738-2196757 | MS.gene27011:CDS | 55.0% | |
| ! | GATGCTTTAGCGTGGCTTGC+GGG | - | chr1.3:2199146-2199165 | None:intergenic | 55.0% |
| GCCATGTTGGCCCTGCAGTT+TGG | + | chr1.3:2196751-2196770 | MS.gene27011:CDS | 60.0% | |
| TTGCAGGGAGTGGTGGCATC+TGG | + | chr1.3:2198367-2198386 | MS.gene27011:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 2196679 | 2199208 | 2196679 | ID=MS.gene27011 |
| chr1.3 | mRNA | 2196679 | 2199208 | 2196679 | ID=MS.gene27011.t1;Parent=MS.gene27011 |
| chr1.3 | exon | 2196679 | 2196899 | 2196679 | ID=MS.gene27011.t1.exon1;Parent=MS.gene27011.t1 |
| chr1.3 | CDS | 2196679 | 2196899 | 2196679 | ID=cds.MS.gene27011.t1;Parent=MS.gene27011.t1 |
| chr1.3 | exon | 2197347 | 2197409 | 2197347 | ID=MS.gene27011.t1.exon2;Parent=MS.gene27011.t1 |
| chr1.3 | CDS | 2197347 | 2197409 | 2197347 | ID=cds.MS.gene27011.t1;Parent=MS.gene27011.t1 |
| chr1.3 | exon | 2197621 | 2197737 | 2197621 | ID=MS.gene27011.t1.exon3;Parent=MS.gene27011.t1 |
| chr1.3 | CDS | 2197621 | 2197737 | 2197621 | ID=cds.MS.gene27011.t1;Parent=MS.gene27011.t1 |
| chr1.3 | exon | 2197832 | 2198285 | 2197832 | ID=MS.gene27011.t1.exon4;Parent=MS.gene27011.t1 |
| chr1.3 | CDS | 2197832 | 2198285 | 2197832 | ID=cds.MS.gene27011.t1;Parent=MS.gene27011.t1 |
| chr1.3 | exon | 2198373 | 2198524 | 2198373 | ID=MS.gene27011.t1.exon5;Parent=MS.gene27011.t1 |
| chr1.3 | CDS | 2198373 | 2198524 | 2198373 | ID=cds.MS.gene27011.t1;Parent=MS.gene27011.t1 |
| chr1.3 | exon | 2199019 | 2199208 | 2199019 | ID=MS.gene27011.t1.exon6;Parent=MS.gene27011.t1 |
| chr1.3 | CDS | 2199019 | 2199208 | 2199019 | ID=cds.MS.gene27011.t1;Parent=MS.gene27011.t1 |
| Gene Sequence |
| Protein sequence |
