AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene25810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene25810.t1 MTR_3g080190 98.857 525 6 0 1 525 1 525 0.0 1092
MS.gene25810.t1 MTR_5g085730 82.016 506 89 2 21 525 12 516 0.0 885
MS.gene25810.t1 MTR_5g093590 71.753 485 136 1 22 505 16 500 0.0 747
MS.gene25810.t1 MTR_8g099410 61.803 466 176 1 40 505 28 491 0.0 629
MS.gene25810.t1 MTR_8g099410 61.803 466 176 1 40 505 28 491 0.0 627
MS.gene25810.t1 MTR_4g074960 60.897 468 180 3 39 505 27 492 0.0 598
MS.gene25810.t1 MTR_1g037340 50.620 484 227 6 23 503 5 479 1.57e-168 486
MS.gene25810.t1 MTR_5g009970 48.408 471 224 6 39 506 40 494 6.19e-154 449
MS.gene25810.t1 MTR_5g010000 48.536 478 227 6 36 510 36 497 1.14e-153 449
MS.gene25810.t1 MTR_3g080810 48.936 470 229 7 38 505 33 493 1.89e-152 445
MS.gene25810.t1 MTR_8g104820 49.362 470 225 8 40 505 30 490 1.97e-152 445
MS.gene25810.t1 MTR_3g117500 48.511 470 231 6 40 506 24 485 3.17e-151 442
MS.gene25810.t1 MTR_3g105230 46.436 463 232 5 31 493 21 467 1.24e-146 430
MS.gene25810.t1 MTR_4g035930 44.491 481 252 6 26 505 1 467 4.50e-145 425
MS.gene25810.t1 MTR_4g035955 45.322 481 247 7 26 505 1 466 1.52e-144 424
MS.gene25810.t1 MTR_3g023740 45.657 495 245 6 23 509 5 483 1.05e-142 420
MS.gene25810.t1 MTR_3g010330 47.122 469 232 7 40 505 25 480 9.46e-140 412
MS.gene25810.t1 MTR_4g035975 45.875 497 239 10 25 505 7 489 2.73e-138 409
MS.gene25810.t1 MTR_1g088190 46.341 492 220 10 15 503 26 476 1.08e-137 407
MS.gene25810.t1 MTR_5g009970 47.430 428 206 6 82 506 9 420 1.70e-133 394
MS.gene25810.t1 MTR_3g113720 43.312 471 253 9 41 506 58 519 7.43e-125 375
MS.gene25810.t1 MTR_5g009970 45.721 409 203 6 101 506 1 393 3.75e-121 362
MS.gene25810.t1 MTR_8g075990 43.220 472 252 10 41 506 64 525 1.16e-119 362
MS.gene25810.t1 MTR_2g028480 42.074 511 253 16 40 523 111 605 1.50e-103 324
MS.gene25810.t1 MTR_3g082440 39.095 486 260 15 40 502 116 588 1.55e-93 298
MS.gene25810.t1 MTR_3g090540 36.111 540 278 18 19 510 68 588 1.04e-92 295
MS.gene25810.t1 MTR_5g009970 45.161 341 168 6 169 506 1 325 3.42e-88 275
MS.gene25810.t1 MTR_1g088190 44.776 335 144 8 15 347 26 321 7.54e-76 243
MS.gene25810.t1 MTR_1g037320 54.658 161 72 1 101 261 1 160 1.83e-46 164
MS.gene25810.t1 MTR_1g037320 47.541 122 63 1 382 503 169 289 4.93e-33 127
MS.gene25810.t1 MTR_7g108925 47.742 155 80 1 349 503 43 196 1.08e-45 160
MS.gene25810.t1 MTR_0393s0050 45.714 140 76 0 349 488 20 159 2.42e-37 136
MS.gene25810.t1 MTR_4g128810 27.500 320 155 10 216 502 55 330 9.00e-28 114
MS.gene25810.t1 MTR_4g047570 32.174 115 55 3 289 402 2 94 5.52e-14 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene25810.t1 AT2G32990 75.051 493 113 1 22 504 11 503 0.0 786
MS.gene25810.t1 AT1G64390 62.446 466 173 1 40 505 25 488 0.0 623
MS.gene25810.t1 AT4G11050 61.242 467 179 1 40 506 26 490 0.0 612
MS.gene25810.t1 AT4G11050 61.242 467 179 1 40 506 26 490 0.0 612
MS.gene25810.t1 AT4G11050 61.242 467 179 1 40 506 26 490 0.0 609
MS.gene25810.t1 AT1G48930 58.584 466 191 2 39 504 29 492 0.0 550
MS.gene25810.t1 AT2G44550 51.566 479 223 4 25 503 18 487 1.96e-168 486
MS.gene25810.t1 AT2G44540 50.830 482 227 5 22 503 17 488 8.49e-164 474
MS.gene25810.t1 AT2G44560 51.458 480 224 5 24 503 18 488 7.51e-162 469
MS.gene25810.t1 AT2G44570 48.447 483 240 5 24 505 17 491 2.24e-160 465
MS.gene25810.t1 AT1G02800 50.968 465 216 6 40 503 43 496 7.39e-152 444
MS.gene25810.t1 AT4G02290 50.000 468 222 7 40 505 52 509 1.01e-151 444
MS.gene25810.t1 AT1G70710 47.619 483 243 6 24 505 12 485 1.17e-151 443
MS.gene25810.t1 AT4G39010 47.234 470 236 7 40 505 29 490 8.67e-148 433
MS.gene25810.t1 AT1G23210 47.752 467 234 6 40 505 28 485 7.18e-147 431
MS.gene25810.t1 AT4G23560 47.737 486 234 8 24 506 7 475 1.05e-146 430
MS.gene25810.t1 AT4G09740 47.844 487 232 8 24 506 7 475 1.46e-146 429
MS.gene25810.t1 AT3G43860 45.530 481 245 6 26 505 19 483 3.80e-142 419
MS.gene25810.t1 AT3G43860 45.530 481 245 6 26 505 19 483 3.80e-142 419
MS.gene25810.t1 AT1G22880 46.901 484 242 8 24 505 8 478 4.86e-141 416
MS.gene25810.t1 AT1G71380 46.201 487 244 10 24 505 5 478 5.87e-139 410
MS.gene25810.t1 AT1G19940 47.619 462 232 7 40 500 48 500 3.19e-138 409
MS.gene25810.t1 AT1G19940 47.619 462 232 7 40 500 48 500 3.19e-138 409
MS.gene25810.t1 AT4G39000 45.895 475 245 7 40 510 25 491 1.53e-136 404
MS.gene25810.t1 AT1G75680 47.702 457 229 7 41 496 58 505 1.76e-133 398
MS.gene25810.t1 AT4G38990 43.673 490 259 9 25 505 8 489 1.74e-127 381
MS.gene25810.t1 AT4G02290 47.420 407 202 7 101 505 1 397 1.84e-118 355
MS.gene25810.t1 AT2G44570 45.823 395 205 5 24 417 17 403 3.87e-115 347
MS.gene25810.t1 AT1G22880 45.209 407 208 8 101 505 1 394 6.38e-113 340
MS.gene25810.t1 AT4G39010 46.448 366 185 6 40 401 29 387 4.82e-110 333
MS.gene25810.t1 AT1G19940 45.879 364 192 5 40 402 48 407 1.24e-99 307
MS.gene25810.t1 AT5G49720 42.245 490 242 16 40 502 108 583 1.08e-96 306
MS.gene25810.t1 AT4G24260 41.104 489 251 15 40 503 108 584 3.12e-87 281
MS.gene25810.t1 AT1G65610 35.887 496 283 15 40 513 116 598 4.14e-87 281
MS.gene25810.t1 AT4G38990 43.017 358 174 6 25 381 8 336 1.58e-83 263
MS.gene25810.t1 AT1G22880 48.476 328 155 7 24 349 8 323 4.73e-83 261
MS.gene25810.t1 AT4G24260 39.433 388 203 13 40 402 108 488 2.45e-55 193
MS.gene25810.t1 AT4G24260 41.390 331 162 11 40 342 108 434 1.12e-53 188

Find 115 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCACAAGTTGATTACATTT+TGG 0.156175 3.2:-70396778 MS.gene25810:CDS
AGAACCAAATCCTAATATTT+TGG 0.167708 3.2:-70396604 MS.gene25810:CDS
AAATATTAGGATTTGGTTCT+TGG 0.200576 3.2:+70396607 None:intergenic
ATGTAATGGAAGCAATTAAA+TGG 0.203237 3.2:-70399940 MS.gene25810:CDS
AACTCATGTTAAGTGGATTT+TGG 0.205279 3.2:+70396754 None:intergenic
ACCTCTATGATGCACCCTTT+TGG 0.242199 3.2:+70396704 None:intergenic
ATGAGTTACTTAGTGGGATA+TGG 0.273448 3.2:-70396738 MS.gene25810:CDS
GCAGGTGATCATGTGAAATT+TGG 0.274678 3.2:-70400049 MS.gene25810:CDS
ATTGTGCAGTTATTTGAGTT+TGG 0.280930 3.2:-70398656 MS.gene25810:intron
TTGTGCAGTTATTTGAGTTT+GGG 0.294397 3.2:-70398655 MS.gene25810:intron
ACCTCTGCCCACAACACATT+TGG 0.300565 3.2:+70399884 None:intergenic
CCAACCAAAATATTAGGATT+TGG 0.302553 3.2:+70396600 None:intergenic
ATATATAGAGAGTATTTAAA+AGG 0.306750 3.2:+70396404 None:intergenic
AAAGCTCCAACCAAAATATT+AGG 0.310755 3.2:+70396594 None:intergenic
CAGCTGCTTCCATTGTGTTT+AGG 0.320538 3.2:-70399403 MS.gene25810:CDS
TACTTTGAAGCACAACGTTC+AGG 0.324580 3.2:-70400277 MS.gene25810:CDS
TCAAAATTGTCTAGATTATC+AGG 0.328331 3.2:+70396561 None:intergenic
AGAGAGAATAAAGGGTTCAT+AGG 0.328810 3.2:-70396663 MS.gene25810:CDS
ATTTCTAATGCTCATACATT+TGG 0.331259 3.2:-70398488 MS.gene25810:CDS
GCACACAAGGGTATGATAAT+TGG 0.347724 3.2:-70396638 MS.gene25810:CDS
GTGAATTGGCGTCATCATTC+TGG 0.358168 3.2:-70400232 MS.gene25810:CDS
CAATTCACACGTTGGTTGTA+TGG 0.360094 3.2:+70400247 None:intergenic
CATGGAGTGCTATTGAGTTT+AGG 0.363527 3.2:-70399994 MS.gene25810:CDS
GTGACAATGATGTTTAAATC+TGG 0.367337 3.2:+70400381 None:intergenic
GCTCATACATTTGGTGGTAT+TGG 0.372035 3.2:-70398479 MS.gene25810:CDS
CATACAACCAACGTGTGAAT+TGG 0.390136 3.2:-70400246 MS.gene25810:CDS
TTTAGGTGGATTTGGTTGGA+GGG 0.398856 3.2:-70400081 MS.gene25810:intron
TGTAATGGAAGCAATTAAAT+GGG 0.406228 3.2:-70399939 MS.gene25810:CDS
CCTCTGCCCACAACACATTT+GGG 0.407042 3.2:+70399885 None:intergenic
CAAAAGATCAATTGCCAAGA+TGG 0.412945 3.2:-70396837 MS.gene25810:CDS
GTATCATATAGAGAGAATAA+AGG 0.414088 3.2:-70396672 MS.gene25810:CDS
CTGGACGTTGCCAACAATAA+TGG 0.415828 3.2:+70399513 None:intergenic
CTTGAGGTTGTCATGTCCTC+TGG 0.417866 3.2:+70399494 None:intergenic
GTCAAAATATTCTTGTTTGT+CGG 0.429086 3.2:+70398517 None:intergenic
AAGATAGATGAGAAGAATCC+AGG 0.433832 3.2:-70399461 MS.gene25810:CDS
TCATGCAAAGAGGGAATAGA+AGG 0.439518 3.2:-70396461 MS.gene25810:CDS
ATCCCAGCTGAATTCTGTTA+TGG 0.440268 3.2:+70398451 None:intergenic
GGGAAATATGATGGAAGTGT+TGG 0.451425 3.2:-70398620 MS.gene25810:CDS
TATCATATAGAGAGAATAAA+GGG 0.456692 3.2:-70396671 MS.gene25810:CDS
TCTAATGCTCATACATTTGG+TGG 0.457457 3.2:-70398485 MS.gene25810:CDS
AGCTGGGATGTTAAGTATGC+TGG 0.465855 3.2:-70398437 MS.gene25810:CDS
ATGGGCCTAAGTACCCCAAA+AGG 0.469761 3.2:-70396719 MS.gene25810:CDS
ATACATTTGGTGGTATTGGT+TGG 0.472675 3.2:-70398475 MS.gene25810:CDS
TACTAGCCCAAATGTGTTGT+GGG 0.473525 3.2:-70399891 MS.gene25810:CDS
AGGCAAGAAATTGTTGAAGC+TGG 0.479140 3.2:-70399974 MS.gene25810:CDS
ACTTTGAAGCACAACGTTCA+GGG 0.479344 3.2:-70400276 MS.gene25810:CDS
CCCAAATGTGTTGTGGGCAG+AGG 0.481112 3.2:-70399885 MS.gene25810:intron
ACTAAGTAACTCATGTTAAG+TGG 0.486492 3.2:+70396747 None:intergenic
GGTCCATAACAGAATTCAGC+TGG 0.486609 3.2:-70398454 MS.gene25810:CDS
CAAAATTGAGAATTTCATCA+TGG 0.490347 3.2:+70396805 None:intergenic
ACTTAACATGAGTTACTTAG+TGG 0.491572 3.2:-70396745 MS.gene25810:CDS
TGAGTTACTTAGTGGGATAT+GGG 0.492298 3.2:-70396737 MS.gene25810:CDS
TTGGTTGGAGCTTTGGTAGG+AGG 0.493848 3.2:-70396585 MS.gene25810:CDS
TGGAGAAACTGCTGCAGCTA+TGG 0.496286 3.2:-70399426 MS.gene25810:CDS
CATCATTCTGGTCTTACAGA+TGG 0.500607 3.2:-70400220 MS.gene25810:CDS
GAAGAATCCAGGTTCAGATC+TGG 0.506230 3.2:-70399450 MS.gene25810:CDS
ATTGTTGAAGCTGGTGAACT+TGG 0.513050 3.2:-70399965 MS.gene25810:CDS
TTACCTTTGATGCTAAAACT+TGG 0.515672 3.2:+70398411 None:intergenic
CTTACAGATGGTTTAGAACA+AGG 0.516101 3.2:-70400208 MS.gene25810:CDS
ATAATCAAAAGATTGTGTTA+TGG 0.516983 3.2:+70400327 None:intergenic
CATGGCCCACAATCCCATCT+TGG 0.517673 3.2:+70396823 None:intergenic
AGCTACTATGCGTCGGTGAG+TGG 0.518978 3.2:-70398587 MS.gene25810:CDS
GAGAGAATAAAGGGTTCATA+GGG 0.518983 3.2:-70396662 MS.gene25810:CDS
TTGCAAAATTCATGCAAAGA+GGG 0.519154 3.2:-70396470 MS.gene25810:CDS
AAAAGATCAATTGCCAAGAT+GGG 0.520703 3.2:-70396836 MS.gene25810:CDS
AATTGCCAAGATGGGATTGT+GGG 0.521792 3.2:-70396828 MS.gene25810:CDS
ATATAATACTGCACCATTAG+TGG 0.523912 3.2:-70396499 MS.gene25810:CDS
AAATACAGAGGGAAATATGA+TGG 0.525154 3.2:-70398629 MS.gene25810:CDS
GAGACACAGACCATTATTGT+TGG 0.526224 3.2:-70399523 MS.gene25810:CDS
CAAGGGTATGATAATTGGTA+TGG 0.527762 3.2:-70396633 MS.gene25810:CDS
TGTGCAGTTATTTGAGTTTG+GGG 0.529149 3.2:-70398654 MS.gene25810:intron
TGTGAAATTTGGTTTACCAA+TGG 0.529922 3.2:-70400038 MS.gene25810:CDS
AAAATATTCTTGTTTGTCGG+TGG 0.547238 3.2:+70398520 None:intergenic
TTTGCAAAATTCATGCAAAG+AGG 0.550554 3.2:-70396471 MS.gene25810:CDS
GATACATGGATGAGTTATTG+TGG 0.552659 3.2:-70398565 MS.gene25810:CDS
TATAATACTGCACCATTAGT+GGG 0.560164 3.2:-70396498 MS.gene25810:CDS
GTTGGAGGGTACTATGATGC+AGG 0.563279 3.2:-70400067 MS.gene25810:CDS
TGACAATGATGTTTAAATCT+GGG 0.565379 3.2:+70400382 None:intergenic
TGCGTCGGTGAGTGGATACA+TGG 0.568122 3.2:-70398579 MS.gene25810:CDS
AATGTAATCAACTTGTGACT+TGG 0.573884 3.2:+70396782 None:intergenic
GGGTTCATAGGGTGCACACA+AGG 0.574402 3.2:-70396651 MS.gene25810:CDS
ATACTAGCCCAAATGTGTTG+TGG 0.577675 3.2:-70399892 MS.gene25810:CDS
TCTCCAGCCAGATCTGAACC+TGG 0.578429 3.2:+70399443 None:intergenic
ATACATGGATGAGTTATTGT+GGG 0.579757 3.2:-70398564 MS.gene25810:CDS
TTACTGTCACAATGTTGTCA+TGG 0.583673 3.2:-70400012 MS.gene25810:CDS
TACAGATGGTTTAGAACAAG+GGG 0.583836 3.2:-70400206 MS.gene25810:intron
GCAAAGAGGGAATAGAAGGT+TGG 0.590189 3.2:-70396457 MS.gene25810:CDS
TATCTTAAAAGCTTGTCTTG+AGG 0.590517 3.2:+70399478 None:intergenic
AGTTATTGTGGGGAGCTATG+TGG 0.591433 3.2:-70398553 MS.gene25810:CDS
AATCCAGGTTCAGATCTGGC+TGG 0.593866 3.2:-70399446 MS.gene25810:CDS
CTTAACATGAGTTACTTAGT+GGG 0.597597 3.2:-70396744 MS.gene25810:CDS
ATTCTCTCTATATGATACAA+TGG 0.597953 3.2:+70396677 None:intergenic
CAATTGCCAAGATGGGATTG+TGG 0.600603 3.2:-70396829 MS.gene25810:CDS
ATTGTGACAGTAAATGCCAT+TGG 0.602158 3.2:+70400022 None:intergenic
TGGTGAACTTGGTCATGTAA+TGG 0.602665 3.2:-70399954 MS.gene25810:CDS
TGGGCCTAAGTACCCCAAAA+GGG 0.608177 3.2:-70396718 MS.gene25810:CDS
CTTACATAGAGTAATCCAGC+TGG 0.611840 3.2:+70396939 None:intergenic
TTACAGATGGTTTAGAACAA+GGG 0.612255 3.2:-70400207 MS.gene25810:CDS
AATGTGGAAAGAACACCAGC+TGG 0.616199 3.2:-70396954 MS.gene25810:CDS
CCCAAAAGGGTGCATCATAG+AGG 0.625621 3.2:-70396705 MS.gene25810:CDS
AGTTTGGGGACAAATACAGA+GGG 0.630720 3.2:-70398640 MS.gene25810:CDS
TTACTACTACCTGCTGAGCA+TGG 0.641231 3.2:+70399345 None:intergenic
GTCCATAACAGAATTCAGCT+GGG 0.643895 3.2:-70398453 MS.gene25810:CDS
TTATTGTTGGCAACGTCCAG+AGG 0.652974 3.2:-70399510 MS.gene25810:CDS
GATGACGCCAATTCACACGT+TGG 0.653190 3.2:+70400239 None:intergenic
AGTGAAGAGCTACTATGCGT+CGG 0.655502 3.2:-70398594 MS.gene25810:CDS
AAAAGTAGCTGAGAATAATG+TGG 0.661774 3.2:+70399371 None:intergenic
GAGTTTGGGGACAAATACAG+AGG 0.667296 3.2:-70398641 MS.gene25810:CDS
GAACAATTATGTGCAAACTG+AGG 0.668349 3.2:-70396529 MS.gene25810:CDS
GTAATGGAAGCAATTAAATG+GGG 0.669304 3.2:-70399938 MS.gene25810:CDS
AAACAATGGCAGCAGCAATG+TGG 0.670730 3.2:-70396970 MS.gene25810:CDS
GGTTCATAGGGTGCACACAA+GGG 0.675227 3.2:-70396650 MS.gene25810:CDS
GATTACTCTATGTAAGACAG+TGG 0.704386 3.2:-70396932 MS.gene25810:CDS
TTGAAGCACAACGTTCAGGG+AGG 0.711742 3.2:-70400273 MS.gene25810:CDS
TACATGGATGAGTTATTGTG+GGG 0.766782 3.2:-70398563 MS.gene25810:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGAATAATTTATTATGTT+TGG - chr3.2:70397588-70397607 MS.gene25810:intron 10.0%
!!! TACTAATATTTTTACTTAAT+TGG + chr3.2:70398089-70398108 None:intergenic 10.0%
!! AAAATACAAACAAAACAAAA+GGG - chr3.2:70398456-70398475 MS.gene25810:CDS 15.0%
!! TAAAATACAAACAAAACAAA+AGG - chr3.2:70398455-70398474 MS.gene25810:CDS 15.0%
!! TATTAAAGTATGTAAAACAA+GGG - chr3.2:70397666-70397685 MS.gene25810:intron 15.0%
!!! AAAGTTTGGATTTTTATTTT+TGG - chr3.2:70396732-70396751 MS.gene25810:CDS 15.0%
!!! AAGTTTGGATTTTTATTTTT+GGG - chr3.2:70396733-70396752 MS.gene25810:CDS 15.0%
!! AAAAAATAACAAATGGATCA+AGG + chr3.2:70399499-70399518 None:intergenic 20.0%
!! AAAAATAACAAATGGATCAA+GGG + chr3.2:70399498-70399517 None:intergenic 20.0%
!! AAAAGAACAACAAATATTTC+TGG - chr3.2:70399613-70399632 MS.gene25810:intron 20.0%
!! ACTATCCAAAAAATAACAAA+TGG + chr3.2:70399506-70399525 None:intergenic 20.0%
!! ATAATCAAAAGATTGTGTTA+TGG + chr3.2:70396522-70396541 None:intergenic 20.0%
!! GTATTAAAGTATGTAAAACA+AGG - chr3.2:70397665-70397684 MS.gene25810:intron 20.0%
!! TAGACTATAGCTAATATAAA+TGG - chr3.2:70398954-70398973 MS.gene25810:intron 20.0%
!! TATCATATAGAGAGAATAAA+GGG - chr3.2:70400175-70400194 MS.gene25810:intron 20.0%
!! TGAAGTCAAAAATAAAATGA+CGG - chr3.2:70398686-70398705 MS.gene25810:intron 20.0%
!! TTTAGAAGAAGAAAATTTCA+GGG - chr3.2:70399390-70399409 MS.gene25810:CDS 20.0%
!!! AAGATTGTAAATAGCTATTT+TGG - chr3.2:70397690-70397709 MS.gene25810:intron 20.0%
!!! ACTACAGTAAATAGTTATTT+TGG + chr3.2:70397946-70397965 None:intergenic 20.0%
!!! ACTTTTGAAACAAAAGTAAA+AGG + chr3.2:70398736-70398755 None:intergenic 20.0%
!!! ATTTGTTATTTTTTGGATAG+TGG - chr3.2:70399505-70399524 MS.gene25810:CDS 20.0%
!!! GAAACAAAATTCTGAAATTA+AGG - chr3.2:70397278-70397297 MS.gene25810:intron 20.0%
!!! GAAATTAAGGTTTTTTACTT+AGG - chr3.2:70397291-70397310 MS.gene25810:intron 20.0%
!!! GTTTTGATTGTGTTTTTTTT+TGG - chr3.2:70397770-70397789 MS.gene25810:intron 20.0%
!!! TACTACACTATCAATTTTAA+AGG - chr3.2:70398019-70398038 MS.gene25810:intron 20.0%
!!! TACTAGTAAACTTTTACATA+AGG + chr3.2:70399713-70399732 None:intergenic 20.0%
!!! TATCATTTGATTTGATTTGA+TGG - chr3.2:70398760-70398779 MS.gene25810:intron 20.0%
!!! TTCAAACATGTCAATTTTAT+AGG - chr3.2:70398533-70398552 MS.gene25810:CDS 20.0%
!!! TTCTAGTATTTTATTTGTGT+TGG - chr3.2:70398604-70398623 MS.gene25810:CDS 20.0%
!!! TTGATCCATTTGTTATTTTT+TGG - chr3.2:70399498-70399517 MS.gene25810:CDS 20.0%
!!! TTTGTTATTTTTTGGATAGT+GGG - chr3.2:70399506-70399525 MS.gene25810:CDS 20.0%
!!! TTTTTGTGTACTTTAAAGTT+TGG - chr3.2:70396718-70396737 MS.gene25810:CDS 20.0%
! AGAATAGTCATTGGTAAATA+AGG + chr3.2:70399359-70399378 None:intergenic 25.0%
! AGACAAAAAAGAGTGATTAA+AGG + chr3.2:70398485-70398504 None:intergenic 25.0%
! ATCTAAGGGATATTGTTAAT+AGG - chr3.2:70398789-70398808 MS.gene25810:intron 25.0%
! ATTCTCTCTATATGATACAA+TGG + chr3.2:70400172-70400191 None:intergenic 25.0%
! ATTTCTAATGCTCATACATT+TGG - chr3.2:70398358-70398377 MS.gene25810:intron 25.0%
! CAAAATTGAGAATTTCATCA+TGG + chr3.2:70400044-70400063 None:intergenic 25.0%
! GAAGTCAAAAATAAAATGAC+GGG - chr3.2:70398687-70398706 MS.gene25810:intron 25.0%
! GTATCATATAGAGAGAATAA+AGG - chr3.2:70400174-70400193 MS.gene25810:intron 25.0%
! GTTTAGAAGAAGAAAATTTC+AGG - chr3.2:70399389-70399408 MS.gene25810:CDS 25.0%
! TACTTGTCTCTTAAAGTTAA+AGG + chr3.2:70397648-70397667 None:intergenic 25.0%
! TCAAAATTGTCTAGATTATC+AGG + chr3.2:70400288-70400307 None:intergenic 25.0%
! TGACAATGATGTTTAAATCT+GGG + chr3.2:70396467-70396486 None:intergenic 25.0%
! TGACTAACAAAACATATTAC+AGG + chr3.2:70397824-70397843 None:intergenic 25.0%
! TGCATATATAGAATAGTCAT+TGG + chr3.2:70399368-70399387 None:intergenic 25.0%
! TTCAGTGTAATTATATGTGT+TGG - chr3.2:70397082-70397101 MS.gene25810:intron 25.0%
! TTTCTTAAAGCCCAAAATAA+AGG + chr3.2:70399532-70399551 None:intergenic 25.0%
!! AGAACCAAATCCTAATATTT+TGG - chr3.2:70400242-70400261 MS.gene25810:CDS 25.0%
!! ATGTAATGGAAGCAATTAAA+TGG - chr3.2:70396906-70396925 MS.gene25810:CDS 25.0%
!! ATGTACATTTGAAGTGATAT+TGG - chr3.2:70399670-70399689 MS.gene25810:intron 25.0%
!! GTCAAAATATTCTTGTTTGT+CGG + chr3.2:70398332-70398351 None:intergenic 25.0%
!! TGATAATCTAGACAATTTTG+AGG - chr3.2:70400287-70400306 MS.gene25810:CDS 25.0%
!! TGTAATGGAAGCAATTAAAT+GGG - chr3.2:70396907-70396926 MS.gene25810:CDS 25.0%
!! TGTACATTTGAAGTGATATT+GGG - chr3.2:70399671-70399690 MS.gene25810:intron 25.0%
!! TTAGCTATAGTCTATTCTTT+TGG + chr3.2:70398948-70398967 None:intergenic 25.0%
!!! AAATATTAGGATTTGGTTCT+TGG + chr3.2:70400242-70400261 None:intergenic 25.0%
!!! AATATGTTTTGTTAGTCAGT+TGG - chr3.2:70397826-70397845 MS.gene25810:intron 25.0%
!!! AATTTTAAAGGCAAATAGTG+GGG - chr3.2:70398031-70398050 MS.gene25810:intron 25.0%
!!! ACACTTTTTATGTTTTCTTC+AGG - chr3.2:70399259-70399278 MS.gene25810:intron 25.0%
!!! ATTAAGGTTTTTTACTTAGG+TGG - chr3.2:70397294-70397313 MS.gene25810:intron 25.0%
!!! ATTTGTTTTCCTAAACACAA+TGG + chr3.2:70397455-70397474 None:intergenic 25.0%
!!! CAATTTTAAAGGCAAATAGT+GGG - chr3.2:70398030-70398049 MS.gene25810:intron 25.0%
!!! CACTTTTTATGTTTTCTTCA+GGG - chr3.2:70399260-70399279 MS.gene25810:intron 25.0%
!!! TCAATTTTAAAGGCAAATAG+TGG - chr3.2:70398029-70398048 MS.gene25810:intron 25.0%
!!! TCACAAGTTGATTACATTTT+GGG - chr3.2:70400069-70400088 MS.gene25810:CDS 25.0%
!!! TGTTGTTCTTTTAGAAATGT+GGG + chr3.2:70399605-70399624 None:intergenic 25.0%
!!! TTAAGGTTTTTTACTTAGGT+GGG - chr3.2:70397295-70397314 MS.gene25810:intron 25.0%
!!! TTCACTTTCTTTGATTTTGA+TGG - chr3.2:70396685-70396704 MS.gene25810:CDS 25.0%
!!! TTGGAATTTTGACATATTCA+TGG - chr3.2:70397888-70397907 MS.gene25810:intron 25.0%
!!! TTGTTGTTCTTTTAGAAATG+TGG + chr3.2:70399606-70399625 None:intergenic 25.0%
!!! TTTTTGGGTTTGTGTTTTTT+AGG - chr3.2:70396748-70396767 MS.gene25810:CDS 25.0%
AAAAGATCAATTGCCAAGAT+GGG - chr3.2:70400010-70400029 MS.gene25810:CDS 30.0%
AAAAGTAGCTGAGAATAATG+TGG + chr3.2:70397478-70397497 None:intergenic 30.0%
AAAGCTCCAACCAAAATATT+AGG + chr3.2:70400255-70400274 None:intergenic 30.0%
AAATACAGAGGGAAATATGA+TGG - chr3.2:70398217-70398236 MS.gene25810:intron 30.0%
AATGTAATCAACTTGTGACT+TGG + chr3.2:70400067-70400086 None:intergenic 30.0%
ACTAAGTAACTCATGTTAAG+TGG + chr3.2:70400102-70400121 None:intergenic 30.0%
ACTTAACATGAGTTACTTAG+TGG - chr3.2:70400101-70400120 MS.gene25810:intron 30.0%
ATACATGGATGAGTTATTGT+GGG - chr3.2:70398282-70398301 MS.gene25810:intron 30.0%
ATATAATACTGCACCATTAG+TGG - chr3.2:70400347-70400366 MS.gene25810:CDS 30.0%
ATTATGCATTCACACTTATC+AGG + chr3.2:70397983-70398002 None:intergenic 30.0%
ATTTGATGGAGCAATATCTA+AGG - chr3.2:70398774-70398793 MS.gene25810:intron 30.0%
CCAACCAAAATATTAGGATT+TGG + chr3.2:70400249-70400268 None:intergenic 30.0%
CTCTTTGATTAGTAATCTCA+TGG + chr3.2:70397854-70397873 None:intergenic 30.0%
CTTAACATGAGTTACTTAGT+GGG - chr3.2:70400102-70400121 MS.gene25810:intron 30.0%
GACAAATGTTGAAGTTTCAA+TGG - chr3.2:70398908-70398927 MS.gene25810:intron 30.0%
GAGAAATAAGCCATTGAAAA+AGG + chr3.2:70398634-70398653 None:intergenic 30.0%
GTGAATATAGCACAATTTAG+AGG + chr3.2:70397527-70397546 None:intergenic 30.0%
GTGACAATGATGTTTAAATC+TGG + chr3.2:70396468-70396487 None:intergenic 30.0%
TAATGCACAATGATTGATAG+TGG - chr3.2:70399433-70399452 MS.gene25810:CDS 30.0%
TATAATACTGCACCATTAGT+GGG - chr3.2:70400348-70400367 MS.gene25810:CDS 30.0%
TATCTTAAAAGCTTGTCTTG+AGG + chr3.2:70397371-70397390 None:intergenic 30.0%
TCATGTCTCAACAAAAACAA+TGG - chr3.2:70399862-70399881 MS.gene25810:intron 30.0%
TCTCAAATTATTAGCAGTGT+CGG + chr3.2:70397051-70397070 None:intergenic 30.0%
TTACCTTTGATGCTAAAACT+TGG + chr3.2:70398438-70398457 None:intergenic 30.0%
TTGCAAAATTCATGCAAAGA+GGG - chr3.2:70400376-70400395 MS.gene25810:CDS 30.0%
TTGTGCTATATTCACTATAG+TGG - chr3.2:70397532-70397551 MS.gene25810:intron 30.0%
TTTGATGGAGCAATATCTAA+GGG - chr3.2:70398775-70398794 MS.gene25810:intron 30.0%
TTTGCAAAATTCATGCAAAG+AGG - chr3.2:70400375-70400394 MS.gene25810:CDS 30.0%
! AAAAAGTGTGTATTCCATGA+AGG + chr3.2:70399248-70399267 None:intergenic 30.0%
! AAAATATTCTTGTTTGTCGG+TGG + chr3.2:70398329-70398348 None:intergenic 30.0%
! AAGGTGCTTAAAAATGAAGT+GGG + chr3.2:70397629-70397648 None:intergenic 30.0%
! ATGTTAGTAAAGCATTATGC+AGG + chr3.2:70398667-70398686 None:intergenic 30.0%
! ATTGTGCAGTTATTTGAGTT+TGG - chr3.2:70398190-70398209 MS.gene25810:intron 30.0%
! GTAACTTTTGCAGTTTTTGA+TGG - chr3.2:70399771-70399790 MS.gene25810:intron 30.0%
! GTAATGGAAGCAATTAAATG+GGG - chr3.2:70396908-70396927 MS.gene25810:CDS 30.0%
! TGTGAAATTTGGTTTACCAA+TGG - chr3.2:70396808-70396827 MS.gene25810:CDS 30.0%
! TTACAGATGGTTTAGAACAA+GGG - chr3.2:70396639-70396658 MS.gene25810:CDS 30.0%
! TTGTGCAGTTATTTGAGTTT+GGG - chr3.2:70398191-70398210 MS.gene25810:intron 30.0%
! TTTCCAATTTTTGAACTTCC+TGG - chr3.2:70397230-70397249 MS.gene25810:intron 30.0%
!! AAAGGTGCTTAAAAATGAAG+TGG + chr3.2:70397630-70397649 None:intergenic 30.0%
!! AACTCATGTTAAGTGGATTT+TGG + chr3.2:70400095-70400114 None:intergenic 30.0%
!! TAGACAATTTTGAGGATCAA+AGG - chr3.2:70400295-70400314 MS.gene25810:CDS 30.0%
!! TATTTCTGGAAATGTACTTC+TGG - chr3.2:70399627-70399646 MS.gene25810:intron 30.0%
!! TGATCTTTTGATTCTCACTT+TGG + chr3.2:70399999-70400018 None:intergenic 30.0%
!!! CCAAATCCTAATATTTTGGT+TGG - chr3.2:70400246-70400265 MS.gene25810:CDS 30.0%
!!! GTCACAAGTTGATTACATTT+TGG - chr3.2:70400068-70400087 MS.gene25810:CDS 30.0%
!!! TAATATTTTGGTTGGAGCTT+TGG - chr3.2:70400254-70400273 MS.gene25810:CDS 30.0%
!!! TGTTGGTTTTCCTTTTTCAA+TGG - chr3.2:70398621-70398640 MS.gene25810:CDS 30.0%
!!! TTGTGTTTTTTAGGTGGATT+TGG - chr3.2:70396757-70396776 MS.gene25810:CDS 30.0%
AAGATAGATGAGAAGAATCC+AGG - chr3.2:70397385-70397404 MS.gene25810:intron 35.0%
AGAGAGAATAAAGGGTTCAT+AGG - chr3.2:70400183-70400202 MS.gene25810:intron 35.0%
AGGGTTTGCAATAAATCAGT+TGG - chr3.2:70399279-70399298 MS.gene25810:intron 35.0%
AGTAAAAGCAAAAAGCAGCA+TGG + chr3.2:70398560-70398579 None:intergenic 35.0%
ATGAGTTACTTAGTGGGATA+TGG - chr3.2:70400108-70400127 MS.gene25810:intron 35.0%
ATTGTGACAGTAAATGCCAT+TGG + chr3.2:70396827-70396846 None:intergenic 35.0%
CAAAAGATCAATTGCCAAGA+TGG - chr3.2:70400009-70400028 MS.gene25810:CDS 35.0%
CAACCAGGAAGTTCAAAAAT+TGG + chr3.2:70397236-70397255 None:intergenic 35.0%
CATTAATCATCACATCAACC+AGG + chr3.2:70397251-70397270 None:intergenic 35.0%
CTATCACAGTTCAATTACAG+TGG - chr3.2:70398868-70398887 MS.gene25810:intron 35.0%
GAACAATTATGTGCAAACTG+AGG - chr3.2:70400317-70400336 MS.gene25810:CDS 35.0%
GAGAGAATAAAGGGTTCATA+GGG - chr3.2:70400184-70400203 MS.gene25810:intron 35.0%
GATACATGGATGAGTTATTG+TGG - chr3.2:70398281-70398300 MS.gene25810:intron 35.0%
GATTACTCTATGTAAGACAG+TGG - chr3.2:70399914-70399933 MS.gene25810:CDS 35.0%
TACATGGATGAGTTATTGTG+GGG - chr3.2:70398283-70398302 MS.gene25810:intron 35.0%
TCAATCAGATAAGCAATCAG+TGG + chr3.2:70399158-70399177 None:intergenic 35.0%
TCTAATGCTCATACATTTGG+TGG - chr3.2:70398361-70398380 MS.gene25810:intron 35.0%
TGAGTTACTTAGTGGGATAT+GGG - chr3.2:70400109-70400128 MS.gene25810:intron 35.0%
TTACTGTCACAATGTTGTCA+TGG - chr3.2:70396834-70396853 MS.gene25810:CDS 35.0%
TTTGAATTAAGCCAACCTAG+AGG + chr3.2:70398519-70398538 None:intergenic 35.0%
TTTGCAAAAACTCCCACTAA+TGG + chr3.2:70400363-70400382 None:intergenic 35.0%
! AAAACTGCTAGAGCACATTT+TGG - chr3.2:70399311-70399330 MS.gene25810:intron 35.0%
! AAGAGACTCGTGAATGTTTT+TGG - chr3.2:70397869-70397888 MS.gene25810:intron 35.0%
! CAAGGGTATGATAATTGGTA+TGG - chr3.2:70400213-70400232 MS.gene25810:CDS 35.0%
! CTGGTTGATGTGATGATTAA+TGG - chr3.2:70397249-70397268 MS.gene25810:intron 35.0%
! CTTACAGATGGTTTAGAACA+AGG - chr3.2:70396638-70396657 MS.gene25810:CDS 35.0%
! CTTTTCTCAAAAAGTCTCAC+AGG + chr3.2:70397162-70397181 None:intergenic 35.0%
! GACATATTCATGGACTATAG+TGG - chr3.2:70397898-70397917 MS.gene25810:intron 35.0%
! GACGGGTTTAAGACTTAATT+TGG - chr3.2:70398704-70398723 MS.gene25810:intron 35.0%
! GCTATAGTCTATTCTTTTGG+AGG + chr3.2:70398945-70398964 None:intergenic 35.0%
! TACAGATGGTTTAGAACAAG+GGG - chr3.2:70396640-70396659 MS.gene25810:CDS 35.0%
! TGTGCAGTTATTTGAGTTTG+GGG - chr3.2:70398192-70398211 MS.gene25810:intron 35.0%
!! ACATGCATTGACTGTCAAAA+TGG - chr3.2:70399120-70399139 MS.gene25810:intron 35.0%
!! ATACATTTGGTGGTATTGGT+TGG - chr3.2:70398371-70398390 MS.gene25810:intron 35.0%
!! TCTCCAAGTTTTAGCATCAA+AGG - chr3.2:70398432-70398451 MS.gene25810:CDS 35.0%
!!! GTTTTTTAGGTGGATTTGGT+TGG - chr3.2:70396761-70396780 MS.gene25810:CDS 35.0%
!!! TAGAGCACATTTTGGTTACT+TGG - chr3.2:70399319-70399338 MS.gene25810:intron 35.0%
!!! TGCTGCTTTTTGCTTTTACT+TGG - chr3.2:70398560-70398579 MS.gene25810:CDS 35.0%
!!! TTGGGTTTGTGTTTTTTAGG+TGG - chr3.2:70396751-70396770 MS.gene25810:CDS 35.0%
!!! TTTTTTACTTAGGTGGGTGA+TGG - chr3.2:70397301-70397320 MS.gene25810:intron 35.0%
AAGTGTGTATTCCATGAAGG+TGG + chr3.2:70399245-70399264 None:intergenic 40.0%
AATTGCCAAGATGGGATTGT+GGG - chr3.2:70400018-70400037 MS.gene25810:CDS 40.0%
ACAGTTCAATTACAGTGGTC+TGG - chr3.2:70398873-70398892 MS.gene25810:intron 40.0%
ACTATAGTGGCACTAGTGTT+TGG - chr3.2:70397545-70397564 MS.gene25810:intron 40.0%
AGGCAAGAAATTGTTGAAGC+TGG - chr3.2:70396872-70396891 MS.gene25810:CDS 40.0%
AGTGTGTATTCCATGAAGGT+GGG + chr3.2:70399244-70399263 None:intergenic 40.0%
AGTTTGGGGACAAATACAGA+GGG - chr3.2:70398206-70398225 MS.gene25810:intron 40.0%
ATACTAGCCCAAATGTGTTG+TGG - chr3.2:70396954-70396973 MS.gene25810:CDS 40.0%
ATCCCAGCTGAATTCTGTTA+TGG + chr3.2:70398398-70398417 None:intergenic 40.0%
ATTACAGTGGTCTGGCTATA+TGG - chr3.2:70398881-70398900 MS.gene25810:intron 40.0%
ATTGTTGAAGCTGGTGAACT+TGG - chr3.2:70396881-70396900 MS.gene25810:CDS 40.0%
CATACAACCAACGTGTGAAT+TGG - chr3.2:70396600-70396619 MS.gene25810:CDS 40.0%
CATGAGGCAAGCTATTACTA+TGG - chr3.2:70399211-70399230 MS.gene25810:intron 40.0%
CTTACATAGAGTAATCCAGC+TGG + chr3.2:70399910-70399929 None:intergenic 40.0%
GAGACACAGACCATTATTGT+TGG - chr3.2:70397323-70397342 MS.gene25810:intron 40.0%
GATTAGACATGTCACAGTGT+CGG + chr3.2:70397116-70397135 None:intergenic 40.0%
GCAGGTGATCATGTGAAATT+TGG - chr3.2:70396797-70396816 MS.gene25810:CDS 40.0%
GGCATTGTCTCGCATATTTA+AGG - chr3.2:70397919-70397938 MS.gene25810:intron 40.0%
GTCCATAACAGAATTCAGCT+GGG - chr3.2:70398393-70398412 MS.gene25810:intron 40.0%
TAACAAATGGATCAAGGGCA+AGG + chr3.2:70399493-70399512 None:intergenic 40.0%
TACTAGCCCAAATGTGTTGT+GGG - chr3.2:70396955-70396974 MS.gene25810:CDS 40.0%
TAGACTGCATCAATTGCACA+TGG + chr3.2:70398851-70398870 None:intergenic 40.0%
TCATGCAAAGAGGGAATAGA+AGG - chr3.2:70400385-70400404 MS.gene25810:CDS 40.0%
TGGTGAACTTGGTCATGTAA+TGG - chr3.2:70396892-70396911 MS.gene25810:CDS 40.0%
! CAATTCACACGTTGGTTGTA+TGG + chr3.2:70396602-70396621 None:intergenic 40.0%
! CATGGAGTGCTATTGAGTTT+AGG - chr3.2:70396852-70396871 MS.gene25810:CDS 40.0%
! GAAAGTTGATCCCTTTGCAT+AGG + chr3.2:70399576-70399595 None:intergenic 40.0%
! GCACACAAGGGTATGATAAT+TGG - chr3.2:70400208-70400227 MS.gene25810:CDS 40.0%
! GCTCATACATTTGGTGGTAT+TGG - chr3.2:70398367-70398386 MS.gene25810:intron 40.0%
! GGGAAATATGATGGAAGTGT+TGG - chr3.2:70398226-70398245 MS.gene25810:intron 40.0%
! GTGCTCTAGCAGTTTTACAA+TGG + chr3.2:70399307-70399326 None:intergenic 40.0%
! TTCAATGGCTTATTTCTCGC+TGG - chr3.2:70398636-70398655 MS.gene25810:CDS 40.0%
! TTGCCTCATGATGAGTTGAA+GGG + chr3.2:70399201-70399220 None:intergenic 40.0%
! TTTAGGTGGATTTGGTTGGA+GGG - chr3.2:70396765-70396784 MS.gene25810:CDS 40.0%
!! ACTTTGAAGCACAACGTTCA+GGG - chr3.2:70396570-70396589 MS.gene25810:CDS 40.0%
!! CATCATTCTGGTCTTACAGA+TGG - chr3.2:70396626-70396645 MS.gene25810:CDS 40.0%
!! CTTTTAGAAATGTGGGAGTG+TGG + chr3.2:70399598-70399617 None:intergenic 40.0%
!! GCACAATGATTGATAGTGGA+TGG - chr3.2:70399437-70399456 MS.gene25810:CDS 40.0%
!! TACTTTGAAGCACAACGTTC+AGG - chr3.2:70396569-70396588 MS.gene25810:CDS 40.0%
!! TTTTAGGTGGATTTGGTTGG+AGG - chr3.2:70396764-70396783 MS.gene25810:CDS 40.0%
!!! ATTTTGGTTGGAGCTTTGGT+AGG - chr3.2:70400258-70400277 MS.gene25810:CDS 40.0%
!!! GGATAGTGGGCCTTTATTTT+GGG - chr3.2:70399519-70399538 MS.gene25810:CDS 40.0%
!!! TGGATAGTGGGCCTTTATTT+TGG - chr3.2:70399518-70399537 MS.gene25810:CDS 40.0%
AAACAATGGCAGCAGCAATG+TGG - chr3.2:70399876-70399895 MS.gene25810:intron 45.0%
AATGTGGAAAGAACACCAGC+TGG - chr3.2:70399892-70399911 MS.gene25810:CDS 45.0%
ACTGTGACATGTCTAATCCG+AGG - chr3.2:70397118-70397137 MS.gene25810:intron 45.0%
AGCTGGGATGTTAAGTATGC+TGG - chr3.2:70398409-70398428 MS.gene25810:intron 45.0%
AGTGAAGAGCTACTATGCGT+CGG - chr3.2:70398252-70398271 MS.gene25810:intron 45.0%
AGTGGCACTAGTGTTTGGTT+TGG - chr3.2:70397550-70397569 MS.gene25810:intron 45.0%
AGTTATTGTGGGGAGCTATG+TGG - chr3.2:70398293-70398312 MS.gene25810:intron 45.0%
CAACCCTTCAACTCATCATG+AGG - chr3.2:70399195-70399214 MS.gene25810:intron 45.0%
CAATTGCCAAGATGGGATTG+TGG - chr3.2:70400017-70400036 MS.gene25810:CDS 45.0%
CAGCTGCTTCCATTGTGTTT+AGG - chr3.2:70397443-70397462 MS.gene25810:intron 45.0%
CATTTCACGTTCCTCTAGGT+TGG - chr3.2:70398505-70398524 MS.gene25810:CDS 45.0%
CTGGACGTTGCCAACAATAA+TGG + chr3.2:70397336-70397355 None:intergenic 45.0%
GAAGAATCCAGGTTCAGATC+TGG - chr3.2:70397396-70397415 MS.gene25810:intron 45.0%
GAGTTTGGGGACAAATACAG+AGG - chr3.2:70398205-70398224 MS.gene25810:intron 45.0%
GATCCCTTTGCATAGGTAGA+AGG + chr3.2:70399569-70399588 None:intergenic 45.0%
GCAAAGAGGGAATAGAAGGT+TGG - chr3.2:70400389-70400408 MS.gene25810:CDS 45.0%
GGTCCATAACAGAATTCAGC+TGG - chr3.2:70398392-70398411 MS.gene25810:intron 45.0%
GTCTCACAGGCTATGAAACA+CGG + chr3.2:70397149-70397168 None:intergenic 45.0%
GTCTCATTTCACGTTCCTCT+AGG - chr3.2:70398501-70398520 MS.gene25810:CDS 45.0%
GTGAATTGGCGTCATCATTC+TGG - chr3.2:70396614-70396633 MS.gene25810:CDS 45.0%
GTGCCTTCTACCTATGCAAA+GGG - chr3.2:70399563-70399582 MS.gene25810:intron 45.0%
GTGGGGTATGAAGTATGAAC+TGG - chr3.2:70398048-70398067 MS.gene25810:intron 45.0%
GTGTGTATTCCATGAAGGTG+GGG + chr3.2:70399243-70399262 None:intergenic 45.0%
TATGAAACACGGACACTCCT+CGG + chr3.2:70397138-70397157 None:intergenic 45.0%
TGTGCCTTCTACCTATGCAA+AGG - chr3.2:70399562-70399581 MS.gene25810:intron 45.0%
TTACTACTACCTGCTGAGCA+TGG + chr3.2:70397504-70397523 None:intergenic 45.0%
TTATTGTTGGCAACGTCCAG+AGG - chr3.2:70397336-70397355 MS.gene25810:intron 45.0%
! ACCTCTATGATGCACCCTTT+TGG + chr3.2:70400145-70400164 None:intergenic 45.0%
! CCTCTATGATGCACCCTTTT+GGG + chr3.2:70400144-70400163 None:intergenic 45.0%
! CTCTATGATGCACCCTTTTG+GGG + chr3.2:70400143-70400162 None:intergenic 45.0%
! CTTGCCTCATGATGAGTTGA+AGG + chr3.2:70399202-70399221 None:intergenic 45.0%
AATCCAGGTTCAGATCTGGC+TGG - chr3.2:70397400-70397419 MS.gene25810:intron 50.0%
ACCTCTGCCCACAACACATT+TGG + chr3.2:70396965-70396984 None:intergenic 50.0%
ATGGGCCTAAGTACCCCAAA+AGG - chr3.2:70400127-70400146 MS.gene25810:intron 50.0%
CCTCTGCCCACAACACATTT+GGG + chr3.2:70396964-70396983 None:intergenic 50.0%
CTTGAGGTTGTCATGTCCTC+TGG + chr3.2:70397355-70397374 None:intergenic 50.0%
GATGACGCCAATTCACACGT+TGG + chr3.2:70396610-70396629 None:intergenic 50.0%
GGTTCATAGGGTGCACACAA+GGG - chr3.2:70400196-70400215 MS.gene25810:intron 50.0%
TGGAGAAACTGCTGCAGCTA+TGG - chr3.2:70397420-70397439 MS.gene25810:intron 50.0%
TGGGCCTAAGTACCCCAAAA+GGG - chr3.2:70400128-70400147 MS.gene25810:intron 50.0%
TTGAAGCACAACGTTCAGGG+AGG - chr3.2:70396573-70396592 MS.gene25810:CDS 50.0%
! ACTTTTGCACCATGCTCAGC+AGG - chr3.2:70397492-70397511 MS.gene25810:intron 50.0%
! CCCAAAAGGGTGCATCATAG+AGG - chr3.2:70400141-70400160 MS.gene25810:intron 50.0%
! TTGGTTGGAGCTTTGGTAGG+AGG - chr3.2:70400261-70400280 MS.gene25810:CDS 50.0%
!! GGCACTAGTGTTTGGTTTGG+TGG - chr3.2:70397553-70397572 MS.gene25810:intron 50.0%
!! GTTGGAGGGTACTATGATGC+AGG - chr3.2:70396779-70396798 MS.gene25810:CDS 50.0%
!!! TGCACCCTTTTGGGGTACTT+AGG + chr3.2:70400135-70400154 None:intergenic 50.0%
CATGGCCCACAATCCCATCT+TGG + chr3.2:70400026-70400045 None:intergenic 55.0%
CCCAAATGTGTTGTGGGCAG+AGG - chr3.2:70396961-70396980 MS.gene25810:CDS 55.0%
GGGTTCATAGGGTGCACACA+AGG - chr3.2:70400195-70400214 MS.gene25810:intron 55.0%
TCTCCAGCCAGATCTGAACC+TGG + chr3.2:70397406-70397425 None:intergenic 55.0%
! AGCTACTATGCGTCGGTGAG+TGG - chr3.2:70398259-70398278 MS.gene25810:intron 55.0%
! TGCGTCGGTGAGTGGATACA+TGG - chr3.2:70398267-70398286 MS.gene25810:intron 55.0%
TGGTGTGTGCCCCACCTTCA+TGG - chr3.2:70399231-70399250 MS.gene25810:intron 60.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 70396419 70400449 70396419 ID=MS.gene25810
chr3.2 mRNA 70396419 70400449 70396419 ID=MS.gene25810.t1;Parent=MS.gene25810
chr3.2 exon 70400207 70400449 70400207 ID=MS.gene25810.t1.exon1;Parent=MS.gene25810.t1
chr3.2 CDS 70400207 70400449 70400207 ID=cds.MS.gene25810.t1;Parent=MS.gene25810.t1
chr3.2 exon 70399886 70400098 70399886 ID=MS.gene25810.t1.exon2;Parent=MS.gene25810.t1
chr3.2 CDS 70399886 70400098 70399886 ID=cds.MS.gene25810.t1;Parent=MS.gene25810.t1
chr3.2 exon 70399355 70399555 70399355 ID=MS.gene25810.t1.exon3;Parent=MS.gene25810.t1
chr3.2 CDS 70399355 70399555 70399355 ID=cds.MS.gene25810.t1;Parent=MS.gene25810.t1
chr3.2 exon 70398415 70398669 70398415 ID=MS.gene25810.t1.exon4;Parent=MS.gene25810.t1
chr3.2 CDS 70398415 70398669 70398415 ID=cds.MS.gene25810.t1;Parent=MS.gene25810.t1
chr3.2 exon 70396419 70397084 70396419 ID=MS.gene25810.t1.exon5;Parent=MS.gene25810.t1
chr3.2 CDS 70396419 70397084 70396419 ID=cds.MS.gene25810.t1;Parent=MS.gene25810.t1
Gene Sequence

>MS.gene25810

ATGAAGAATGAGAGACAACAACAACATCATAGAGCTTCTAAAATTCCCAGATTTAAACATCATTGTCACATTTTTCTCTTCATTTTGTTCACTCTTTTTTCCATAACACAATCTTTTGATTATGCTGATGCACTTTCAAAAAGTCTTCTTTACTTTGAAGCACAACGTTCAGGGAGGTTACCATACAACCAACGTGTGAATTGGCGTCATCATTCTGGTCTTACAGATGGTTTAGAACAAGGGGTGAGATCAAAATCATAACTTTTTTCACTTTCTTTGATTTTGATGGATTATGATTGTTTTTGTGTACTTTAAAGTTTGGATTTTTATTTTTGGGTTTGTGTTTTTTAGGTGGATTTGGTTGGAGGGTACTATGATGCAGGTGATCATGTGAAATTTGGTTTACCAATGGCATTTACTGTCACAATGTTGTCATGGAGTGCTATTGAGTTTAGGCAAGAAATTGTTGAAGCTGGTGAACTTGGTCATGTAATGGAAGCAATTAAATGGGGAACTGATTATTTCATCAAAGCTCATACTAGCCCAAATGTGTTGTGGGCAGAGGTATATTAAAGTCTATTTTGAATTGATTTATTTGAGTTTACATAAACACATGCGAGACTGACACGCCGACACTGCTAATAATTTGAGAAAATCATATAATTCAGTGTAATTATATGTGTTGGTGTCGTGTCCGACACTGTGACATGTCTAATCCGAGGAGTGTCCGTGTTTCATAGCCTGTGAGACTTTTTGAGAAAAGTTATGATAAACAGCAAGTAACATGTTCATAAGCTGTTTTTTCAGCTTATTTCCAATTTTTGAACTTCCTGGTTGATGTGATGATTAATGGATTCAAGAAACAAAATTCTGAAATTAAGGTTTTTTACTTAGGTGGGTGATGGAGACACAGACCATTATTGTTGGCAACGTCCAGAGGACATGACAACCTCAAGACAAGCTTTTAAGATAGATGAGAAGAATCCAGGTTCAGATCTGGCTGGAGAAACTGCTGCAGCTATGGCAGCTGCTTCCATTGTGTTTAGGAAAACAAATCCACATTATTCTCAGCTACTTTTGCACCATGCTCAGCAGGTAGTAGTAACCTCTAAATTGTGCTATATTCACTATAGTGGCACTAGTGTTTGGTTTGGTGGTTTAGTTTAAAATATGAATAATTTATTATGTTTGGAGCTAGTTTGCTTTACCCACTTCATTTTTAAGCACCTTTAACTTTAAGAGACAAGTATTAAAGTATGTAAAACAAGGGTAAGATTGTAAATAGCTATTTTGGTCTTTGATTGAGTGAGTTGTTGTTGCATAGTCACATAATGTATCAAAATTACAAAATGTTTTGATTGTGTTTTTTTTTGGTCAATTTGATTCTTAAACATAGTCACATCCTGTAATATGTTTTGTTAGTCAGTTGGATCCATGAGATTACTAATCAAAGAGACTCGTGAATGTTTTTGGAATTTTGACATATTCATGGACTATAGTGGCATTGTCTCGCATATTTAAGGACCAAAATAACTATTTACTGTAGTTGCTAAGTAATGTTCCTGATAAGTGTGAATGCATAATTTTCTTTTAACAAAACTACTACACTATCAATTTTAAAGGCAAATAGTGGGGTATGAAGTATGAACTGGAAGTAGTTTCAACTGCCAATTAAGTAAAAATATTAGTACAAGTTTAAATTAGTTGTGTTTATATTTTTATAGTAATTGAAAGCAATATTTATTTAATTAGTTAGTTGTATATGTGTACTATTGTGCAGTTATTTGAGTTTGGGGACAAATACAGAGGGAAATATGATGGAAGTGTTGGAGTAGTGAAGAGCTACTATGCGTCGGTGAGTGGATACATGGATGAGTTATTGTGGGGAGCTATGTGGTTGTACAAAGCCACCGACAAACAAGAATATTTTGACTACATTATTTCTAATGCTCATACATTTGGTGGTATTGGTTGGTCCATAACAGAATTCAGCTGGGATGTTAAGTATGCTGGTCTCCAAGTTTTAGCATCAAAGGTAAAATACAAACAAAACAAAAGGGTTTCCTTTAATCACTCTTTTTTGTCTCATTTCACGTTCCTCTAGGTTGGCTTAATTCAAACATGTCAATTTTATAGGTCCATGCTGCTTTTTGCTTTTACTTGGTTTTTTCTTTTCTTTCAAACATTCTAGTATTTTATTTGTGTTGGTTTTCCTTTTTCAATGGCTTATTTCTCGCTGGCTTTGCCTGCATAATGCTTTACTAACATGAAGTCAAAAATAAAATGACGGGTTTAAGACTTAATTTGGTTTGTTCCTTTTACTTTTGTTTCAAAAGTTATTTATCATTTGATTTGATTTGATGGAGCAATATCTAAGGGATATTGTTAATAGGAGTTGAAAATCTTGAAAAGTATACTCAAGAACAATGCCATGTGCAATTGATGCAGTCTATCACAGTTCAATTACAGTGGTCTGGCTATATGGTTGTGACAAATGTTGAAGTTTCAATGGTTGCAACAATGCCTCCAAAAGAATAGACTATAGCTAATATAAATGGTTTGTGAATAGTGCTTATAAACATTATAATTAATTAAAAATTAAGAAACAACAAAATCTTAATTGAAATTATTATTTAAATTTTTTATTTGATTGTATCTATTTTATAAATACTCAGCATGCATGTATAGATTTCACTGATATACATGCATTGACTGTCAAAATGGTTATAATGTATGCCACTGATTGCTTATCTGATTGATAGTATGTCTAAACTCTCAACCCTTCAACTCATCATGAGGCAAGCTATTACTATGGTGTGTGCCCCACCTTCATGGAATACACACTTTTTATGTTTTCTTCAGGGTTTGCAATAAATCAGTTGGATCCATTGTAAAACTGCTAGAGCACATTTTGGTTACTTGGCGTAGCACTATTTTCCTTATTTACCAATGACTATTCTATATATGCATGTTTAGAAGAAGAAAATTTCAGGGTTCATTCATTATGTTGTTAGTAATGCACAATGATTGATAGTGGATGGAAACATGTGATGTAACACATTGTTCACATGCCTTGCCCTTGATCCATTTGTTATTTTTTGGATAGTGGGCCTTTATTTTGGGCTTTAAGAAACACTTTGAAATGTGCCTTCTACCTATGCAAAGGGATCAACTTTCCACACTCCCACATTTCTAAAAGAACAACAAATATTTCTGGAAATGTACTTCTGGACGACACATTTTGTCTGAAAATGTACATTTGAAGTGATATTGGGTGTGTAGAAAGCTCTTCCTTATGTAAAAGTTTACTAGTAAATATGTCTTATAAAGTGATTGTGATCTCAATGCAATTGTAACTTTTGCAGTTTTTGATGGATGCAAAACACAATAAGCATGCTGATTTACTAGAACAGTACAAATCAAAAGCAGAGTACTATATATGTTCATGTCTCAACAAAAACAATGGCAGCAGCAATGTGGAAAGAACACCAGCTGGATTACTCTATGTAAGACAGTGGAACAACATGCAATATGTTTCTACAGCAGCATTTCTACTCACAGTTTACTCTGATTTTCTCCAAAGTGAGAATCAAAAGATCAATTGCCAAGATGGGATTGTGGGCCATGATGAAATTCTCAATTTTGCCAAGTCACAAGTTGATTACATTTTGGGCCAAAATCCACTTAACATGAGTTACTTAGTGGGATATGGGCCTAAGTACCCCAAAAGGGTGCATCATAGAGGTGCATCCATTGTATCATATAGAGAGAATAAAGGGTTCATAGGGTGCACACAAGGGTATGATAATTGGTATGGTGTCCAAGAACCAAATCCTAATATTTTGGTTGGAGCTTTGGTAGGAGGACCTGATAATCTAGACAATTTTGAGGATCAAAGGAACAATTATGTGCAAACTGAGGCTTGCACATATAATACTGCACCATTAGTGGGAGTTTTTGCAAAATTCATGCAAAGAGGGAATAGAAGGTTGGTTCATGATTCTGATTCACTTTTAGTTGCTTCCTTTTAA

Protein sequence

>MS.gene25810.t1

MKNERQQQHHRASKIPRFKHHCHIFLFILFTLFSITQSFDYADALSKSLLYFEAQRSGRLPYNQRVNWRHHSGLTDGLEQGVDLVGGYYDAGDHVKFGLPMAFTVTMLSWSAIEFRQEIVEAGELGHVMEAIKWGTDYFIKAHTSPNVLWAEVGDGDTDHYCWQRPEDMTTSRQAFKIDEKNPGSDLAGETAAAMAAASIVFRKTNPHYSQLLLHHAQQLFEFGDKYRGKYDGSVGVVKSYYASVSGYMDELLWGAMWLYKATDKQEYFDYIISNAHTFGGIGWSITEFSWDVKYAGLQVLASKFLMDAKHNKHADLLEQYKSKAEYYICSCLNKNNGSSNVERTPAGLLYVRQWNNMQYVSTAAFLLTVYSDFLQSENQKINCQDGIVGHDEILNFAKSQVDYILGQNPLNMSYLVGYGPKYPKRVHHRGASIVSYRENKGFIGCTQGYDNWYGVQEPNPNILVGALVGGPDNLDNFEDQRNNYVQTEACTYNTAPLVGVFAKFMQRGNRRLVHDSDSLLVASF