Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063321.t1 | XP_013453200.1 | 98 | 635 | 13 | 0 | 19 | 653 | 25 | 659 | 0.00E+00 | 1258.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063321.t1 | O23247 | 71.9 | 587 | 159 | 3 | 67 | 653 | 62 | 642 | 7.7e-256 | 884.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063321.t1 | A0A072UDN7 | 98.0 | 635 | 13 | 0 | 19 | 653 | 25 | 659 | 0.0e+00 | 1258.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050770 | MS.gene063321 | 0.800765 | 1.24E-48 | -1.69E-46 |
| MS.gene054804 | MS.gene063321 | 0.800474 | 1.42E-48 | -1.69E-46 |
| MS.gene061200 | MS.gene063321 | 0.806806 | 6.88E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene58134 | MS.gene063321 | PPI |
| MS.gene063321 | MS.gene58136 | PPI |
| MS.gene28183 | MS.gene063321 | PPI |
| MS.gene063321 | MS.gene030686 | PPI |
| MS.gene063321 | MS.gene90825 | PPI |
| MS.gene063321 | MS.gene065875 | PPI |
| MS.gene063321 | MS.gene97346 | PPI |
| MS.gene063321 | MS.gene061256 | PPI |
| MS.gene063321 | MS.gene030099 | PPI |
| MS.gene063321 | MS.gene029093 | PPI |
| MS.gene063321 | MS.gene68406 | PPI |
| MS.gene28454 | MS.gene063321 | PPI |
| MS.gene063321 | MS.gene031761 | PPI |
| MS.gene063321 | MS.gene26848 | PPI |
| MS.gene063321 | MS.gene70283 | PPI |
| MS.gene063321 | MS.gene70282 | PPI |
| MS.gene063321 | MS.gene030685 | PPI |
| MS.gene063321 | MS.gene066439 | PPI |
| MS.gene063321 | MS.gene052373 | PPI |
| MS.gene063321 | MS.gene037771 | PPI |
| MS.gene80766 | MS.gene063321 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063321.t1 | MTR_6g088865 | 97.953 | 635 | 13 | 0 | 19 | 653 | 25 | 659 | 0.0 | 1298 |
| MS.gene063321.t1 | MTR_3g110380 | 76.639 | 595 | 137 | 2 | 60 | 653 | 3 | 596 | 0.0 | 979 |
| MS.gene063321.t1 | MTR_1g106040 | 76.975 | 595 | 135 | 2 | 60 | 653 | 3 | 596 | 0.0 | 978 |
| MS.gene063321.t1 | MTR_4g102240 | 69.154 | 603 | 169 | 2 | 60 | 653 | 3 | 597 | 0.0 | 883 |
| MS.gene063321.t1 | MTR_7g099100 | 39.362 | 94 | 52 | 1 | 83 | 176 | 7 | 95 | 1.24e-15 | 74.7 |
| MS.gene063321.t1 | MTR_5g014910 | 64.706 | 51 | 16 | 1 | 298 | 346 | 18 | 68 | 4.13e-15 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063321.t1 | AT4G26300 | 67.666 | 634 | 199 | 3 | 20 | 653 | 15 | 642 | 0.0 | 908 |
| MS.gene063321.t1 | AT4G26300 | 71.769 | 588 | 160 | 3 | 66 | 653 | 35 | 616 | 0.0 | 905 |
| MS.gene063321.t1 | AT4G26300 | 68.429 | 624 | 191 | 3 | 30 | 653 | 36 | 653 | 0.0 | 904 |
| MS.gene063321.t1 | AT4G26300 | 71.769 | 588 | 160 | 3 | 66 | 653 | 48 | 629 | 0.0 | 903 |
| MS.gene063321.t1 | AT4G26300 | 71.769 | 588 | 160 | 3 | 66 | 653 | 9 | 590 | 0.0 | 902 |
| MS.gene063321.t1 | AT1G66530 | 70.847 | 590 | 160 | 4 | 64 | 653 | 13 | 590 | 0.0 | 890 |
Find 153 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACCTATATGGGTACATTT+TGG | 0.209197 | 6.1:-78331664 | None:intergenic |
| TGCATTTCCTTTGCTATATT+AGG | 0.230117 | 6.1:-78327689 | None:intergenic |
| CTAGGATTTGTTCTATTATC+AGG | 0.230898 | 6.1:+78333118 | MS.gene063321:CDS |
| CACCTTAGATCTACCATAAT+TGG | 0.239076 | 6.1:+78327719 | MS.gene063321:CDS |
| ATTGAGAAGCTGGATAAATT+AGG | 0.258389 | 6.1:+78330852 | MS.gene063321:CDS |
| TCATGAATCTGAGCGTTTAT+TGG | 0.264785 | 6.1:+78333523 | MS.gene063321:CDS |
| CATGAATCTGAGCGTTTATT+GGG | 0.272551 | 6.1:+78333524 | MS.gene063321:CDS |
| ACAGAATGGGGTTATTGTTT+TGG | 0.275705 | 6.1:+78333499 | MS.gene063321:intron |
| GAACAAGACCAAAACCTATA+TGG | 0.279776 | 6.1:-78331675 | None:intergenic |
| CTTTACCTTTGGCAGGTTGT+AGG | 0.288028 | 6.1:+78334194 | MS.gene063321:intron |
| GGCTAATGTGTCTCCAATTA+TGG | 0.291070 | 6.1:-78327732 | None:intergenic |
| TCAATAACCCCGGGGATATA+TGG | 0.291279 | 6.1:-78330834 | None:intergenic |
| GGAATGACGGAAAACGATTT+AGG | 0.294789 | 6.1:+78331701 | MS.gene063321:CDS |
| CTGTTTCACTAACATCTTCT+TGG | 0.301819 | 6.1:-78328398 | None:intergenic |
| AAATGTACCCATATAGGTTT+TGG | 0.307172 | 6.1:+78331667 | MS.gene063321:CDS |
| AACAAATTTGTGATATTAGT+AGG | 0.317651 | 6.1:+78330151 | MS.gene063321:CDS |
| GGTATATGGTCGAAGCTTAA+AGG | 0.320920 | 6.1:+78326964 | MS.gene063321:CDS |
| TTGTTCTATTATCAGGAAAT+CGG | 0.341921 | 6.1:+78333125 | MS.gene063321:CDS |
| TTGTGCCCTCAGCTTAAATT+CGG | 0.343494 | 6.1:-78329994 | None:intergenic |
| ATGGGTTATAATTTGTAAAC+AGG | 0.349387 | 6.1:-78334302 | None:intergenic |
| GTAATAATGCAATGGGTATA+TGG | 0.356456 | 6.1:+78326950 | MS.gene063321:intron |
| ACACTTTGATATGCTATATA+AGG | 0.359400 | 6.1:+78331302 | MS.gene063321:CDS |
| TTCATGCTCTTTAGCTGGTC+CGG | 0.363410 | 6.1:+78327397 | MS.gene063321:CDS |
| TGAAGAAGATTGTTGAGTTT+TGG | 0.365743 | 6.1:-78324205 | None:intergenic |
| AAGCTTAAAGGGAAGGAAAC+TGG | 0.366170 | 6.1:+78326976 | MS.gene063321:CDS |
| ATTTGCTTGATGAAGCTAAA+AGG | 0.366435 | 6.1:+78331755 | MS.gene063321:CDS |
| ATTGTGTATGTTACTGATAT+TGG | 0.367298 | 6.1:+78331270 | MS.gene063321:CDS |
| TGATCAGATGCTTAGTGATA+AGG | 0.369123 | 6.1:+78332206 | MS.gene063321:CDS |
| GATGTTTGCACCGCCAAAAC+TGG | 0.377872 | 6.1:+78326756 | MS.gene063321:CDS |
| TCACTAACATCTTCTTGGTT+TGG | 0.385208 | 6.1:-78328393 | None:intergenic |
| AACAGCCATCGGAGATCTTC+AGG | 0.387102 | 6.1:+78328416 | MS.gene063321:CDS |
| GAGCAGTGAGGTTGTTCGTT+TGG | 0.392276 | 6.1:+78331729 | MS.gene063321:CDS |
| CAACCGATCTCGCATCGCTT+TGG | 0.393057 | 6.1:+78330973 | MS.gene063321:CDS |
| TTGTGTATGTTACTGATATT+GGG | 0.393093 | 6.1:+78331271 | MS.gene063321:CDS |
| TATCCAAAATGTACCCATAT+AGG | 0.395742 | 6.1:+78331661 | MS.gene063321:CDS |
| AGATTTCTGCCAAGCTATAT+AGG | 0.410585 | 6.1:-78333822 | None:intergenic |
| CATCAGAGGCAATTGGTTAC+GGG | 0.416031 | 6.1:+78331971 | MS.gene063321:CDS |
| ACATCAGAGGCAATTGGTTA+CGG | 0.418994 | 6.1:+78331970 | MS.gene063321:CDS |
| GTCGAAATCATGTTGGTGAC+TGG | 0.424997 | 6.1:+78327792 | MS.gene063321:CDS |
| AAAGTTCTATTCTAATTGTC+AGG | 0.425546 | 6.1:+78333852 | MS.gene063321:CDS |
| TTCTAGATACAACTAATGAT+TGG | 0.428395 | 6.1:+78331926 | MS.gene063321:intron |
| CTCCAATTATGGTAGATCTA+AGG | 0.428684 | 6.1:-78327721 | None:intergenic |
| TGGAGTTCAACTGGAGGAAA+TGG | 0.431540 | 6.1:+78330203 | MS.gene063321:CDS |
| ATTTAAGCTGAGGGCACAAC+AGG | 0.437434 | 6.1:+78329998 | MS.gene063321:CDS |
| GGCGGTGCAAACATCAACTA+AGG | 0.438474 | 6.1:-78326748 | None:intergenic |
| TCAACGTCTTGGAGTTCAAC+TGG | 0.441535 | 6.1:+78330194 | MS.gene063321:CDS |
| TGTTCTATTATCAGGAAATC+GGG | 0.446632 | 6.1:+78333126 | MS.gene063321:CDS |
| TCAACCATAGCCCTCCTGAT+TGG | 0.449478 | 6.1:-78327656 | None:intergenic |
| TGCTGCAGTAATAATGCAAT+GGG | 0.455761 | 6.1:+78326943 | MS.gene063321:intron |
| GAGAAAACATCAGAGGCAAT+TGG | 0.457627 | 6.1:+78331964 | MS.gene063321:CDS |
| TTTCAGGCCTCTAGGCGTGC+AGG | 0.460068 | 6.1:+78331613 | MS.gene063321:intron |
| ACAGGCAGTGGTTCTGCTCC+AGG | 0.461427 | 6.1:+78330016 | MS.gene063321:CDS |
| AGGTAATCACACAGCACATT+AGG | 0.467880 | 6.1:-78333802 | None:intergenic |
| GATTATACCTGTCCAATAGC+AGG | 0.471468 | 6.1:-78327012 | None:intergenic |
| CCCCGGGGTTATTGAGAAGC+TGG | 0.473086 | 6.1:+78330842 | MS.gene063321:CDS |
| AACAAGACCAAAACCTATAT+GGG | 0.476698 | 6.1:-78331674 | None:intergenic |
| AAAACTGGCAGTGTAAAATT+CGG | 0.483146 | 6.1:+78326771 | MS.gene063321:CDS |
| GGGCACCTCGACTTCCAATC+AGG | 0.485972 | 6.1:+78327642 | MS.gene063321:CDS |
| TTGCCATGCCTTGCGATACC+TGG | 0.487038 | 6.1:-78330130 | None:intergenic |
| TAACCAAAGCGATGCGAGAT+CGG | 0.488721 | 6.1:-78330976 | None:intergenic |
| TAAAATTCGGTGATTATCAA+TGG | 0.490072 | 6.1:+78326784 | MS.gene063321:CDS |
| ATAGATTCATGCTCTTTAGC+TGG | 0.490847 | 6.1:+78327392 | MS.gene063321:CDS |
| TCATGCTCTTTAGCTGGTCC+GGG | 0.491784 | 6.1:+78327398 | MS.gene063321:CDS |
| TATCTCAGAGTGGGGATACC+AGG | 0.495254 | 6.1:+78330112 | MS.gene063321:intron |
| TGTAAACAGGTTCAATTCCA+AGG | 0.496202 | 6.1:-78334289 | None:intergenic |
| GGCACAACATCTTCCTCATC+AGG | 0.500105 | 6.1:-78326726 | None:intergenic |
| TCCAGCTTCTCAATAACCCC+GGG | 0.501106 | 6.1:-78330843 | None:intergenic |
| GGCGTGCAGGTTGGCTTCCA+CGG | 0.501890 | 6.1:+78331626 | MS.gene063321:CDS |
| GCTGGATAAATTAGGATTGG+TGG | 0.502134 | 6.1:+78330860 | MS.gene063321:CDS |
| GACAAGGTCTATCAACGTCT+TGG | 0.504370 | 6.1:+78330183 | MS.gene063321:CDS |
| TTCTATAATCCATATATCCC+CGG | 0.508489 | 6.1:+78330825 | MS.gene063321:CDS |
| ATGTTGTCTTGTCAAAGCAT+TGG | 0.509068 | 6.1:+78327429 | MS.gene063321:CDS |
| TGTGCCCTCAGCTTAAATTC+GGG | 0.511525 | 6.1:-78329993 | None:intergenic |
| TCGAAATCATGTTGGTGACT+GGG | 0.512556 | 6.1:+78327793 | MS.gene063321:CDS |
| AAACATTGAAGAAGTAAAGA+AGG | 0.512805 | 6.1:+78333152 | MS.gene063321:CDS |
| GAAGCTGGATAAATTAGGAT+TGG | 0.513016 | 6.1:+78330857 | MS.gene063321:CDS |
| ACAAATTTGTGATATTAGTA+GGG | 0.515922 | 6.1:+78330152 | MS.gene063321:CDS |
| TTCCTCTCCTAATATAGCAA+AGG | 0.518979 | 6.1:+78327682 | MS.gene063321:CDS |
| ACTTCCAATCAGGAGGGCTA+TGG | 0.520747 | 6.1:+78327652 | MS.gene063321:CDS |
| TCTATAATCCATATATCCCC+GGG | 0.521268 | 6.1:+78330826 | MS.gene063321:CDS |
| GTCAAAGCATTGGATAGCTC+AGG | 0.522519 | 6.1:+78327439 | MS.gene063321:CDS |
| ATGAAGACTTACAATAGATA+AGG | 0.525752 | 6.1:-78324268 | None:intergenic |
| GTATATGGTCGAAGCTTAAA+GGG | 0.528730 | 6.1:+78326965 | MS.gene063321:CDS |
| AGGCCTCTAGGCGTGCAGGT+TGG | 0.530226 | 6.1:+78331617 | MS.gene063321:intron |
| GATTGGAAGTCGAGGTGCCC+AGG | 0.533086 | 6.1:-78327639 | None:intergenic |
| GGTCTTGTTCTTGGGAATGA+CGG | 0.535827 | 6.1:+78331688 | MS.gene063321:CDS |
| ATTTGCTCTACGCACATGCT+AGG | 0.540556 | 6.1:+78333100 | MS.gene063321:CDS |
| CATGAATCTATCATTTCAGA+TGG | 0.541436 | 6.1:-78327380 | None:intergenic |
| GTACATTACCACGTTCAAGA+AGG | 0.544032 | 6.1:-78331792 | None:intergenic |
| GGGAAGGAAACTGGATTCAA+AGG | 0.546490 | 6.1:+78326985 | MS.gene063321:CDS |
| TTCCTTTGCTATATTAGGAG+AGG | 0.546637 | 6.1:-78327684 | None:intergenic |
| TTGCTGCAGTAATAATGCAA+TGG | 0.547635 | 6.1:+78326942 | MS.gene063321:intron |
| ATCCAGCTTCTCAATAACCC+CGG | 0.548776 | 6.1:-78330844 | None:intergenic |
| GCTGAGGGCACAACAGGCAG+TGG | 0.549833 | 6.1:+78330004 | MS.gene063321:CDS |
| TACATTACCACGTTCAAGAA+GGG | 0.554480 | 6.1:-78331791 | None:intergenic |
| AAGACAACATTAACAAATCC+CGG | 0.559872 | 6.1:-78327416 | None:intergenic |
| TGGAGGAAGATTGTTAATGA+TGG | 0.561457 | 6.1:-78327360 | None:intergenic |
| TAAATGATGGTATTGATACC+TGG | 0.561596 | 6.1:+78327621 | MS.gene063321:CDS |
| AAAAGTCTACTAGTTTCCTC+AGG | 0.570208 | 6.1:-78334221 | None:intergenic |
| ATTATACCTGTCCAATAGCA+GGG | 0.574659 | 6.1:-78327011 | None:intergenic |
| GTCACCAACATGATTTCGAC+GGG | 0.578960 | 6.1:-78327789 | None:intergenic |
| GTACAAAGGATGCTAAATGA+TGG | 0.581813 | 6.1:+78327608 | MS.gene063321:CDS |
| GCTCGTGTGATATATGTTGA+GGG | 0.584942 | 6.1:+78330897 | MS.gene063321:CDS |
| CACCTCGACTTCCAATCAGG+AGG | 0.587835 | 6.1:+78327645 | MS.gene063321:CDS |
| AAAGACAATTGTGCCTGATG+AGG | 0.597552 | 6.1:+78326713 | MS.gene063321:CDS |
| AACTAATGATTGGTCTGAGG+AGG | 0.598206 | 6.1:+78331936 | MS.gene063321:CDS |
| ACGGAAAACGATTTAGGAGT+CGG | 0.602408 | 6.1:+78331707 | MS.gene063321:CDS |
| CGAAATCATGTTGGTGACTG+GGG | 0.602786 | 6.1:+78327794 | MS.gene063321:CDS |
| AGTCACCAACATGATTTCGA+CGG | 0.606648 | 6.1:-78327790 | None:intergenic |
| ATGGTCGAAGCTTAAAGGGA+AGG | 0.607490 | 6.1:+78326969 | MS.gene063321:CDS |
| TCCTACTGCAGAGCGTACAA+AGG | 0.608375 | 6.1:+78327594 | MS.gene063321:intron |
| CTTACAATAGATAAGGTAGG+AGG | 0.611439 | 6.1:-78324261 | None:intergenic |
| AAGCCAACCTGCACGCCTAG+AGG | 0.613067 | 6.1:-78331620 | None:intergenic |
| ATTATTGCTGTGAAAAGAGA+TGG | 0.613326 | 6.1:+78330933 | MS.gene063321:CDS |
| TGTTGGTGACTGGGGAACAC+AGG | 0.615523 | 6.1:+78327802 | MS.gene063321:CDS |
| TCTATAAGGCATCTAAAGTG+AGG | 0.617569 | 6.1:+78329958 | MS.gene063321:CDS |
| TGCTCGTGTGATATATGTTG+AGG | 0.619716 | 6.1:+78330896 | MS.gene063321:CDS |
| AAATGATGGTATTGATACCT+GGG | 0.620700 | 6.1:+78327622 | MS.gene063321:CDS |
| GCCCTCCTGATTGGAAGTCG+AGG | 0.625087 | 6.1:-78327647 | None:intergenic |
| ATCTAAAGTGAGGTTTGATG+AGG | 0.626315 | 6.1:+78329968 | MS.gene063321:CDS |
| TGGGGATACCAGGTATCGCA+AGG | 0.626622 | 6.1:+78330122 | MS.gene063321:CDS |
| GGATCCCGAATTTAAGCTGA+GGG | 0.627827 | 6.1:+78329989 | MS.gene063321:CDS |
| AGACTTACAATAGATAAGGT+AGG | 0.630403 | 6.1:-78324264 | None:intergenic |
| GTTACCCGTCGAAATCATGT+TGG | 0.631464 | 6.1:+78327785 | MS.gene063321:CDS |
| ATACCAGGTATCGCAAGGCA+TGG | 0.632918 | 6.1:+78330127 | MS.gene063321:CDS |
| TCTCACCTGAAGATCTCCGA+TGG | 0.633055 | 6.1:-78328421 | None:intergenic |
| ATGAATCTGAGCGTTTATTG+GGG | 0.635831 | 6.1:+78333525 | MS.gene063321:CDS |
| ACCTCGACTTCCAATCAGGA+GGG | 0.641855 | 6.1:+78327646 | MS.gene063321:CDS |
| GTGTGATTACCTATATAGCT+TGG | 0.642012 | 6.1:+78333813 | MS.gene063321:CDS |
| GGATACGCGTTCTCATTCCG+TGG | 0.646781 | 6.1:-78331643 | None:intergenic |
| CACGTGAAAATTCAAGCACG+CGG | 0.647535 | 6.1:-78327754 | None:intergenic |
| GCGGTGCAAACATCAACTAA+GGG | 0.648232 | 6.1:-78326747 | None:intergenic |
| ATAGCAAAGGAAATGCATGT+TGG | 0.648481 | 6.1:+78327695 | MS.gene063321:CDS |
| TACAACTAATGATTGGTCTG+AGG | 0.651844 | 6.1:+78331933 | MS.gene063321:CDS |
| GCAGGTTGTAGGATCGCCTG+AGG | 0.653494 | 6.1:+78334205 | MS.gene063321:intron |
| GAATCTATCATTTCAGATGG+AGG | 0.659548 | 6.1:-78327377 | None:intergenic |
| GGAGATTGAGAAAACATCAG+AGG | 0.660043 | 6.1:+78331957 | MS.gene063321:CDS |
| GATGTTAGTGAAACAGCCAT+CGG | 0.662294 | 6.1:+78328405 | MS.gene063321:CDS |
| TAGTAGGGCTGAATTTGACA+AGG | 0.663148 | 6.1:+78330167 | MS.gene063321:CDS |
| ATCAGAGGCAATTGGTTACG+GGG | 0.665874 | 6.1:+78331972 | MS.gene063321:CDS |
| AGGATCCCGAATTTAAGCTG+AGG | 0.666184 | 6.1:+78329988 | MS.gene063321:CDS |
| TCATATACTACAATTTCCTG+AGG | 0.673818 | 6.1:+78333550 | MS.gene063321:CDS |
| AAAACTGCCCTTCTTGAACG+TGG | 0.679246 | 6.1:+78331784 | MS.gene063321:CDS |
| TTATACCTGTCCAATAGCAG+GGG | 0.687064 | 6.1:-78327010 | None:intergenic |
| GGATTGGTGGAAGATAGTGA+TGG | 0.696144 | 6.1:+78330873 | MS.gene063321:CDS |
| ACGTCTTGGAGTTCAACTGG+AGG | 0.701002 | 6.1:+78330197 | MS.gene063321:CDS |
| ATTGCTGTGAAAAGAGATGG+TGG | 0.705312 | 6.1:+78330936 | MS.gene063321:CDS |
| ACGTGAAAATTCAAGCACGC+GGG | 0.709660 | 6.1:-78327753 | None:intergenic |
| TATACCTGTCCAATAGCAGG+GGG | 0.719296 | 6.1:-78327009 | None:intergenic |
| TGAGTCTTAGAACTGAGTGA+AGG | 0.723510 | 6.1:-78324231 | None:intergenic |
| ATTTAGGAGTCGGAGCAGTG+AGG | 0.728341 | 6.1:+78331717 | MS.gene063321:CDS |
| CTATAATCCATATATCCCCG+GGG | 0.746058 | 6.1:+78330827 | MS.gene063321:CDS |
| CCAGCTTCTCAATAACCCCG+GGG | 0.768970 | 6.1:-78330842 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 78322585 | 78334319 | 78322585 | ID=MS.gene063321 |
| chr6.1 | mRNA | 78322585 | 78334319 | 78322585 | ID=MS.gene063321.t1;Parent=MS.gene063321 |
| chr6.1 | exon | 78322585 | 78322641 | 78322585 | ID=MS.gene063321.t1.exon1;Parent=MS.gene063321.t1 |
| chr6.1 | CDS | 78322585 | 78322641 | 78322585 | ID=cds.MS.gene063321.t1;Parent=MS.gene063321.t1 |
| chr6.1 | exon | 78324156 | 78324278 | 78324156 | ID=MS.gene063321.t1.exon2;Parent=MS.gene063321.t1 |
| chr6.1 | CDS | 78324156 | 78324278 | 78324156 | ID=cds.MS.gene063321.t1;Parent=MS.gene063321.t1 |
| chr6.1 | exon | 78326654 | 78326805 | 78326654 | ID=MS.gene063321.t1.exon3;Parent=MS.gene063321.t1 |
| chr6.1 | CDS | 78326654 | 78326805 | 78326654 | ID=cds.MS.gene063321.t1;Parent=MS.gene063321.t1 |
| chr6.1 | exon | 78326951 | 78327026 | 78326951 | ID=MS.gene063321.t1.exon4;Parent=MS.gene063321.t1 |
| chr6.1 | CDS | 78326951 | 78327026 | 78326951 | ID=cds.MS.gene063321.t1;Parent=MS.gene063321.t1 |
| chr6.1 | exon | 78327359 | 78327460 | 78327359 | ID=MS.gene063321.t1.exon5;Parent=MS.gene063321.t1 |
| chr6.1 | CDS | 78327359 | 78327460 | 78327359 | ID=cds.MS.gene063321.t1;Parent=MS.gene063321.t1 |
| chr6.1 | exon | 78327605 | 78327823 | 78327605 | ID=MS.gene063321.t1.exon6;Parent=MS.gene063321.t1 |
| chr6.1 | CDS | 78327605 | 78327823 | 78327605 | ID=cds.MS.gene063321.t1;Parent=MS.gene063321.t1 |
| chr6.1 | exon | 78328357 | 78328437 | 78328357 | ID=MS.gene063321.t1.exon7;Parent=MS.gene063321.t1 |
| chr6.1 | CDS | 78328357 | 78328437 | 78328357 | ID=cds.MS.gene063321.t1;Parent=MS.gene063321.t1 |
| chr6.1 | exon | 78329954 | 78330037 | 78329954 | ID=MS.gene063321.t1.exon8;Parent=MS.gene063321.t1 |
| chr6.1 | CDS | 78329954 | 78330037 | 78329954 | ID=cds.MS.gene063321.t1;Parent=MS.gene063321.t1 |
| chr6.1 | exon | 78330120 | 78330224 | 78330120 | ID=MS.gene063321.t1.exon9;Parent=MS.gene063321.t1 |
| chr6.1 | CDS | 78330120 | 78330224 | 78330120 | ID=cds.MS.gene063321.t1;Parent=MS.gene063321.t1 |
| chr6.1 | exon | 78330816 | 78330994 | 78330816 | ID=MS.gene063321.t1.exon10;Parent=MS.gene063321.t1 |
| chr6.1 | CDS | 78330816 | 78330994 | 78330816 | ID=cds.MS.gene063321.t1;Parent=MS.gene063321.t1 |
| chr6.1 | exon | 78331239 | 78331323 | 78331239 | ID=MS.gene063321.t1.exon11;Parent=MS.gene063321.t1 |
| chr6.1 | CDS | 78331239 | 78331323 | 78331239 | ID=cds.MS.gene063321.t1;Parent=MS.gene063321.t1 |
| chr6.1 | exon | 78331619 | 78331805 | 78331619 | ID=MS.gene063321.t1.exon12;Parent=MS.gene063321.t1 |
| chr6.1 | CDS | 78331619 | 78331805 | 78331619 | ID=cds.MS.gene063321.t1;Parent=MS.gene063321.t1 |
| chr6.1 | exon | 78331932 | 78332001 | 78331932 | ID=MS.gene063321.t1.exon13;Parent=MS.gene063321.t1 |
| chr6.1 | CDS | 78331932 | 78332001 | 78331932 | ID=cds.MS.gene063321.t1;Parent=MS.gene063321.t1 |
| chr6.1 | exon | 78332158 | 78332227 | 78332158 | ID=MS.gene063321.t1.exon14;Parent=MS.gene063321.t1 |
| chr6.1 | CDS | 78332158 | 78332227 | 78332158 | ID=cds.MS.gene063321.t1;Parent=MS.gene063321.t1 |
| chr6.1 | exon | 78333084 | 78333173 | 78333084 | ID=MS.gene063321.t1.exon15;Parent=MS.gene063321.t1 |
| chr6.1 | CDS | 78333084 | 78333173 | 78333084 | ID=cds.MS.gene063321.t1;Parent=MS.gene063321.t1 |
| chr6.1 | exon | 78333503 | 78333571 | 78333503 | ID=MS.gene063321.t1.exon16;Parent=MS.gene063321.t1 |
| chr6.1 | CDS | 78333503 | 78333571 | 78333503 | ID=cds.MS.gene063321.t1;Parent=MS.gene063321.t1 |
| chr6.1 | exon | 78333772 | 78333873 | 78333772 | ID=MS.gene063321.t1.exon17;Parent=MS.gene063321.t1 |
| chr6.1 | CDS | 78333772 | 78333873 | 78333772 | ID=cds.MS.gene063321.t1;Parent=MS.gene063321.t1 |
| chr6.1 | exon | 78334209 | 78334319 | 78334209 | ID=MS.gene063321.t1.exon18;Parent=MS.gene063321.t1 |
| chr6.1 | CDS | 78334209 | 78334319 | 78334209 | ID=cds.MS.gene063321.t1;Parent=MS.gene063321.t1 |
| Gene Sequence |
| Protein sequence |
