AlfalfaGEDB | MS.gene065791

M. sativa cultivar XinJiangDaYe / MS.gene065791

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005667 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051726 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065791.t1	XP_013456629.1	97.1	342	7	1	1	339	1	342	1.90E-169	605.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065791.t1	Q9FNY2	67.4	291	61	5	82	339	96	385	2.7e-95	350.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065791.t1	A0A072UXQ9	97.1	342	7	1	1	339	1	342	1.4e-169	605.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049230	MS.gene065791	0.814862	1.24E-51	-1.69E-46
MS.gene049378	MS.gene065791	0.80853	2.96E-50	-1.69E-46
MS.gene050105	MS.gene065791	0.826196	3.10E-54	-1.69E-46
MS.gene050826	MS.gene065791	0.815469	9.10E-52	-1.69E-46
MS.gene050941	MS.gene065791	0.824662	7.15E-54	-1.69E-46
MS.gene051122	MS.gene065791	0.831578	1.54E-55	-1.69E-46
MS.gene052012	MS.gene065791	0.808403	3.15E-50	-1.69E-46
MS.gene052674	MS.gene065791	0.802591	5.22E-49	-1.69E-46
MS.gene052677	MS.gene065791	0.80534	1.40E-49	-1.69E-46
MS.gene053008	MS.gene065791	0.80555	1.26E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 87 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATACACCTCCACTGGG+AGG	0.724160	4.4:+32786105	None:intergenic
AACATGTTTGAAACTGACTG+AGG	0.695881	4.4:+32785070	None:intergenic
AACCTTTCATACTAAATTGC+CGG	0.339281	4.4:+32787820	None:intergenic
AAGATAAGAAAACCTGATCA+GGG	0.563158	4.4:+32786750	None:intergenic
AAGGAAAGCAGCCTATCTGC+AGG	0.574961	4.4:-32786355	MS.gene065791:CDS
AATATTGCGGATGGAGGGGA+AGG	0.575401	4.4:-32785127	MS.gene065791:CDS
AATGAACAATTATATAGCTC+AGG	0.501710	4.4:-32786132	MS.gene065791:CDS
ACACAATATTGCGGATGGAG+GGG	0.585147	4.4:-32785131	MS.gene065791:CDS
ACACACAATATTGCGGATGG+AGG	0.602906	4.4:-32785133	MS.gene065791:CDS
ACTACGCTTTCCGGCCAATC+AGG	0.405110	4.4:-32788808	MS.gene065791:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACATAGTGAACAAACGTTA+TGG	-	chr4.4:32785534-32785553	MS.gene065791:CDS	30.0%
AACCTTTCATACTAAATTGC+CGG	+	chr4.4:32786058-32786077	None:intergenic	30.0%
AAGATAAGAAAACCTGATCA+GGG	+	chr4.4:32787128-32787147	None:intergenic	30.0%
AATCAAATATCAGCACCAAT+AGG	+	chr4.4:32788270-32788289	None:intergenic	30.0%
ACCTTGAATAAATGTACCAT+TGG	+	chr4.4:32785473-32785492	None:intergenic	30.0%
AGCTAAACCAAACATGAAAT+TGG	+	chr4.4:32785310-32785329	None:intergenic	30.0%
AGGAAGTCTAAACATTAAGA+CGG	+	chr4.4:32788454-32788473	None:intergenic	30.0%
AGTTACTGCTATATACTAGA+TGG	-	chr4.4:32788082-32788101	MS.gene065791:intron	30.0%
ATCAACAGTAAATTAGAGAG+GGG	+	chr4.4:32786535-32786554	None:intergenic	30.0%
CAAACAAATGCCCAAAAAAA+GGG	+	chr4.4:32788046-32788065	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	32785003	32788894	32785003	ID=MS.gene065791
chr4.4	mRNA	32785003	32788894	32785003	ID=MS.gene065791.t1;Parent=MS.gene065791
chr4.4	exon	32788679	32788894	32788679	ID=MS.gene065791.t1.exon1;Parent=MS.gene065791.t1
chr4.4	CDS	32788679	32788894	32788679	ID=cds.MS.gene065791.t1;Parent=MS.gene065791.t1
chr4.4	exon	32787823	32787896	32787823	ID=MS.gene065791.t1.exon2;Parent=MS.gene065791.t1
chr4.4	CDS	32787823	32787896	32787823	ID=cds.MS.gene065791.t1;Parent=MS.gene065791.t1
chr4.4	exon	32787290	32787333	32787290	ID=MS.gene065791.t1.exon3;Parent=MS.gene065791.t1
chr4.4	CDS	32787290	32787333	32787290	ID=cds.MS.gene065791.t1;Parent=MS.gene065791.t1
chr4.4	exon	32786763	32786825	32786763	ID=MS.gene065791.t1.exon4;Parent=MS.gene065791.t1
chr4.4	CDS	32786763	32786825	32786763	ID=cds.MS.gene065791.t1;Parent=MS.gene065791.t1
chr4.4	exon	32786510	32786656	32786510	ID=MS.gene065791.t1.exon5;Parent=MS.gene065791.t1
chr4.4	CDS	32786510	32786656	32786510	ID=cds.MS.gene065791.t1;Parent=MS.gene065791.t1
chr4.4	exon	32786341	32786409	32786341	ID=MS.gene065791.t1.exon6;Parent=MS.gene065791.t1
chr4.4	CDS	32786341	32786409	32786341	ID=cds.MS.gene065791.t1;Parent=MS.gene065791.t1
chr4.4	exon	32786086	32786184	32786086	ID=MS.gene065791.t1.exon7;Parent=MS.gene065791.t1
chr4.4	CDS	32786086	32786184	32786086	ID=cds.MS.gene065791.t1;Parent=MS.gene065791.t1
chr4.4	exon	32785513	32785583	32785513	ID=MS.gene065791.t1.exon8;Parent=MS.gene065791.t1
chr4.4	CDS	32785513	32785583	32785513	ID=cds.MS.gene065791.t1;Parent=MS.gene065791.t1
chr4.4	exon	32785003	32785240	32785003	ID=MS.gene065791.t1.exon9;Parent=MS.gene065791.t1
chr4.4	CDS	32785003	32785240	32785003	ID=cds.MS.gene065791.t1;Parent=MS.gene065791.t1

Gene Sequence

>MS.gene065791

GATGGGAACGCAGCCGCATCAATCGTCCGTGGACGAAGAGGACGAGGAATTGATGGGTTGTGGAACTACGCTTTCCGGCCAATCAGGCTCAACCAGCAGGAGTGCCGGGTTACCGTCTAGCCGGAGTGAGCAGACCACGGGGACAGCCGCCGGTGATAACGCTGCTCTCAAATTGAATCATCTTGATATACATGATGACGATGCTGCTTCCAGGCAGTAGTTGCGTGAGTCTTCTCCAATCTCTGCACTTTCTAGATTAATCGCATTTTATTGTTCATGTGATGCAAATTGCTATTTTATAAATCCAATTTCATGTTTGGTTTAGCTTGGGATGAGATTCTGGTGATTTTCTGTGTTAATGTTCTGTACATGCGTTCAATTTTGATTTAGGGCTTAATTTTGTTAAGATTTTCAATTAGTGAAAAGGAAAATGATATACTGGACTTGAACCTGGCTATACATTACTTCCAATGGTACATTTATTCAAGGTCTAAAAAATGGTCCGTTATAGGTAGTGTCTGATACGGTTTTAACATAGTGAACAAACGTTATGGAAGCGGCCATGGTAATTGGTATAGAACAAATTTATTGTTTAAGCTGTTTTTTTTTTATGCTCTTGTCTCTTCTAAAAACATTAAAACCTGAATTAATTAGTGGTTAATTTGGTTTTTAGAAGAAACAAATTCATTGCAAAATTATGAAAAATTTGTTGACAATTCTCCAGTCTATGAAAAATTCATTGCAAAATTAATTAGTGGTTAATTTGTTTTTAATATGATTTTTGCAATGTTGTGATTAATTCACACCGCAACGACCACAATCCATAACGCAACATCCGTAACAGCCAAAGTCATGAAATTCTTAGCGCGACCACGATTCAAAACCTTTTTATTTATATCTATACTTTGTGGTTTTACAACTCCTGTCAATTCTCTGTTTTTATTATTATTTATCACCATTATTTTCGATTGATTCTTACCCACTCAATGTTTATGCAGTACCAAGAAGAAAAAGCGACGGGCTGTTGGGGGTGATAAGAATGGAAGAGGGCTCCGGCAATTTAGTATGAAAGGTTTTTCATCTGTCTTGTTTGACCACTTTGATCTTTAACTTTTTACTAGTAATTTACTTTATCCTTGCAAAGTTGCACTTATCCTTGTTTGAAACAACTTATTTGAACTTATGACATAAACATTTGTGTAAAGGTTTGGAAAGTTTATGCAAATAGCTTATTATATGTCACAAGCTCCTCACAATAGCTTATCGAAGCAATTTATACAGAGCTTATGCAGCGTTTGTATTAATTTTTGACTGTTGAAAGAGTTTATGCATAAGCTCTTGGATGATAAAACACTTATTGAAATAGCACTTAATTAACTTATTTACTGAAATGACCCCTTAGTATGCTGAATGCTGAGTATTTAGACGATAATTGTGAAACTTGCAGCAGTGGTTCTTTTGTTTCACAGACAGAGATTTATTTTATTCAGGCCATTTTTGACAATTTTCTCTACTTTTTGGTGGTTTTTCCCCTCTCTAATTTACTGTTGATTTTCTGCAGTGTGTGAGAAGGTAGAAAGTAAAGGAAGAACAACTTACAATGAGGTTAGGCCTTTACTTTAAACCAGTTTTTTACCACGTTAAAAGCACAGTTCTCAATCATGGATAGCAAATCGGAGCAACCAACTCAATAAATGCTATAGCGAGATTACCACGTTCTAAAATATAAAGTCTTTTATACAGATTTAATAAATGATTCTATAAATACATACATGTTGGAAATGTAAACTAATTACTAAAAGTTCATGTATATCATAGAATAGAATCGTTACCTTCAATTAGTTTTTTAATAGGTTTTGTCAATGATTAAGCACGGTGGTTTTTTGGGATCAAGTTGTCCGTGGTAATTATTAGCCTCAGAAACTGGTAGTGGACTTGAAGCCTGCCTGCCTACCCATTTCATGTTGTGATTTATCATTCATCCGTATTACTTATATTTTTTTTTCTTCTAGTTATTAATCCTTATTTCCTAAAAAAAAAAATTTTTTTTTTTTTTTTTTTAAATATAGGTGGCAGATGAACTTGTGGCTGAATTTTCTGATCCAAGCAATGGTGGTTTGTCCCCTGATCAGGTTTTCTTATCTTCACTAACAATTTCAATATTATTTGCTATTTACACATTAAGGTGTAAGATAAATCTTATGAACTTATTTTTTTGGGGAAAATGAAACTTTTCAGCAACAATATGATGAGAAAAACATCCGTCGAAGGGTCTATGATGCTCTGAATGTTCTTATGGCTATGAATATTATTTCCAAGGATAAAAAAGAAATACAATGGAAGGGTCTTCCTCGTACCAGTCTGAGTGATATTGAAGAACTAAAGGTTTGGTCTTCTTTAGCTGTATCTTTTCTCTCTGCGTGGCTTATTCTTTACCTTCAGTGATGTTCTGATCTAATCCAAAAATATAAATTTGATTAAATAGACACAGCGTCTTGGGCTTAGGAGTAGAATTGAAAGGAAAGCAGCCTATCTGCAGGAGCTTGAGCAGCAAGTAAGTCCAGCCCACTCTAATTGATTTAATACCGGAATGCTAACCTGGATTGCTATTTTTTAAATTTGCACTTGATTATAAGAAGATTCTATCAAACTACGCTGTTTTTGTGTTGTTCAGTTTCTGTTTGCTAACTGCTTTTATTATTGCTACAAGTTTGTAGGTCTTCAGAACCTTATTCAACGAAATGAACAATTATATAGCTCAGGAAATCCTCCCAGTGGAGGTGTATCTTTACCTTTTATTCTGGTTCAGGTATACCATCATCTCAGTATCTGCCTTTTTTGGTCATTTTGTCCAGTAGAAATTGTTGTTCAATTATGCCTTGGATGATAATATATTACATTGATATGAACTCACTACTGAGCATATTACATGAACTTAAGTAGTTGGCTTGGATTTTGACTTATGAACATTTTAATTATAAAGTATTTTATGAAAATAGATCTTATCCAGCTGGTTAGTGAATTAACTAGAAATAATTTTCCCTTTTTTTGGGCATTTGTTTGGATTTTATCGACCGAAAGTTACTGCTATATACTAGATGGATTTTATCAGCTCATATTGTTTAGTTCAGCTTACTCTGGTTGCCTATTTTATGGGTCTATGTTATGGGTTTATACGGAGAATTCCTGGTCATGGATCTTAGAAAGTTGCTAATTTATTTTAATGAATAATATGCTCATCCTGTTGGCTGCTGTGATGTGGCTCCTATTGGTGCTGATATTTGATTAATCTCATGCTTCTAAATCTGTAGACACGTCCTCATGCAACTGTGGAAGTGGAAATATCAGAAGACATGCAGCTTGTTCATTTTGATTTCAATAGGTGAAGCTTCACTTGCCTTGCTTGTCATTATCTGAGTTATGATGTGATTAGCTTTAGGTTTGTACGCCGTCTTAATGTTTAGACTTCCTAATTTTGTGGTATCATAAAGCCCGGAAAGTGGAAACTAGTGTATCCTATTGTGGTCAAACACTCGGACTACTAAAAGAATTTTCAAGTAGATAAGTCTTGGGAGCTAGTTAGGGTGGTGTGGTGCTTTTGTCCCTGTGTTGGAAAATTTATCTGCCACTTATTTATGTTTACTCTCTCTGCAGTTCTCCTTTCGAGCTGCATGACGACAATTATGTTCTCAAGGCAATGGATTTTGGTGGGGGTGAGAGACCACAGAGTGACAATGTTACACACAATATTGCGGATGGAGGGGAAGGTTCTAGCATGTCAGGCATGTATCAATCACAGGTTCCTCAGTCAGTTTCAAACATGTTAGTTAGGCCTCCGACATCACCTCCACTCCCTGGAATATTAAAGGCAAGAGTTAAGCAAGAGAATTGA

Protein sequence

>MS.gene065791.t1

DGNAAASIVRGRRGRGIDGLWNYAFRPIRLNQQECRVTVUPEUADHGDSRRUURCSQIESSUYTUURCCFQAYQEEKATGCWGUUEWKRAPAIUYESVUEGRKURKNNLQUGGRUTCGUIFUSKQWWFVPUSATIUUEKHPSKGLUCSECSYGYEYYFQGUKRNTMEGSSSYQSEUYURTKDTASWAUEUNUKESSLSAGAUAAICRSSEPYSTKUTIIULRKSSQWRCIFTFYSGSDTSSCNCGSGNIRRHAACSFUFQUFSFRAAURQLCSQGNGFWWGUETTEUQCYTQYCGWRGRFUHVRHVSITGSSVSFKHVSUASDITSTPWNIKGKSUAREL