AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene06701


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06701.t1 MTR_6g051425 74.249 233 56 1 1 229 1 233 3.60e-126 374
MS.gene06701.t1 MTR_2g039370 85.135 74 11 0 49 122 98 171 3.01e-36 137
MS.gene06701.t1 MTR_3g465760 72.464 69 15 1 41 105 2 70 7.70e-27 103
MS.gene06701.t1 MTR_4g035820 27.333 300 196 10 18 304 76 366 2.00e-22 102
MS.gene06701.t1 MTR_1g083640 27.586 232 145 6 22 232 56 285 1.12e-21 95.9
MS.gene06701.t1 MTR_0558s0020 28.251 223 137 6 28 229 47 267 2.78e-21 95.1
MS.gene06701.t1 MTR_1g013060 28.019 207 139 4 19 218 26 229 2.87e-20 90.5
MS.gene06701.t1 MTR_1g070355 27.404 208 141 6 27 229 84 286 9.81e-18 87.0
MS.gene06701.t1 MTR_8g446020 28.191 188 119 4 56 229 42 227 1.74e-17 82.8
MS.gene06701.t1 MTR_6g090505 22.388 335 196 6 83 380 55 362 1.33e-16 82.0
MS.gene06701.t1 MTR_7g446520 27.632 228 145 4 2 229 77 284 2.56e-16 80.9
MS.gene06701.t1 MTR_0337s0040 29.167 144 101 1 83 225 81 224 8.60e-16 77.4
MS.gene06701.t1 MTR_0402s0040 29.167 168 109 5 29 191 38 200 6.39e-15 77.8
MS.gene06701.t1 MTR_7g446480 30.147 136 95 0 101 236 149 284 8.49e-14 73.2
MS.gene06701.t1 MTR_7g446510 28.824 170 120 1 67 236 131 299 1.26e-13 72.8
MS.gene06701.t1 MTR_2g014100 27.604 192 116 6 22 192 49 238 1.65e-13 71.2
MS.gene06701.t1 MTR_2g098880 32.727 110 64 3 18 121 62 167 4.82e-13 69.7
MS.gene06701.t1 MTR_2g098880 32.727 110 64 3 18 121 74 179 6.37e-13 69.7
MS.gene06701.t1 MTR_5g076070 25.604 207 142 5 29 229 65 265 7.64e-13 69.7
MS.gene06701.t1 MTR_5g039760 25.758 198 113 5 19 211 12 180 6.07e-12 65.1
MS.gene06701.t1 MTR_2g098920 29.907 107 74 1 18 124 81 186 6.63e-12 66.6
MS.gene06701.t1 MTR_3g450850 24.896 241 164 8 17 244 47 283 1.06e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06701.t1 AT4G38180 35.681 213 131 4 20 228 76 286 7.38e-29 122
MS.gene06701.t1 AT4G38180 25.381 197 118 4 231 400 420 614 2.66e-15 79.7
MS.gene06701.t1 AT4G15090 27.854 219 140 5 20 229 54 263 1.15e-17 87.4
MS.gene06701.t1 AT4G15090 27.854 219 140 5 20 229 54 263 1.15e-17 87.4
MS.gene06701.t1 AT4G15090 27.854 219 140 5 20 229 54 263 1.15e-17 87.4
MS.gene06701.t1 AT4G15090 27.854 219 140 5 20 229 54 263 1.15e-17 87.4
MS.gene06701.t1 AT4G15090 27.854 219 140 5 20 229 54 263 1.15e-17 87.4
MS.gene06701.t1 AT1G10240 28.837 215 146 4 18 226 49 262 2.74e-15 79.7
MS.gene06701.t1 AT1G10240 28.837 215 146 4 18 226 49 262 2.74e-15 79.7
MS.gene06701.t1 AT1G76320 28.293 205 134 5 27 229 7 200 6.94e-15 78.6
MS.gene06701.t1 AT1G76320 28.293 205 134 5 27 229 7 200 6.94e-15 78.6
MS.gene06701.t1 AT1G76320 28.293 205 134 5 27 229 7 200 7.17e-15 78.6
MS.gene06701.t1 AT1G76320 28.365 208 130 5 27 229 7 200 8.86e-15 78.2
MS.gene06701.t1 AT3G06250 27.230 213 112 6 18 228 191 362 5.32e-14 75.9
MS.gene06701.t1 AT3G06250 27.230 213 112 6 18 228 191 362 5.32e-14 75.9
MS.gene06701.t1 AT3G06250 27.230 213 112 6 18 228 191 362 5.32e-14 75.9
MS.gene06701.t1 AT2G27110 26.389 216 132 5 13 228 45 233 8.88e-14 75.1
MS.gene06701.t1 AT2G27110 26.389 216 132 5 13 228 45 233 8.88e-14 75.1
MS.gene06701.t1 AT5G28530 26.432 227 150 4 18 229 56 280 9.26e-14 74.7
MS.gene06701.t1 AT5G28530 26.432 227 150 4 18 229 56 280 9.26e-14 74.7
MS.gene06701.t1 AT5G28530 26.432 227 150 4 18 229 56 280 9.63e-14 74.7
MS.gene06701.t1 AT1G52520 27.488 211 141 4 19 229 87 285 1.35e-13 74.3
MS.gene06701.t1 AT5G28530 29.282 181 119 4 18 192 56 233 1.77e-12 70.5
MS.gene06701.t1 AT5G28530 29.282 181 119 4 18 192 56 233 1.88e-12 70.5
MS.gene06701.t1 AT3G59470 33.010 103 68 1 18 120 71 172 2.86e-12 67.4
MS.gene06701.t1 AT3G59470 33.010 103 68 1 18 120 71 172 2.86e-12 67.4
MS.gene06701.t1 AT3G59470 33.010 103 68 1 18 120 83 184 3.55e-12 67.4

Find 92 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAATATTTGGAATTATTT+AGG 0.090273 3.3:-76396357 MS.gene06701:CDS
TTGCAGGAATCTTGTAATTT+TGG 0.216335 3.3:-76394218 MS.gene06701:intron
GTATACGAGTTACAAATATT+TGG 0.221426 3.3:-76396368 MS.gene06701:CDS
TTGCGGATTTACAATATTAA+AGG 0.235308 3.3:-76395157 MS.gene06701:intron
CAAATATTTGGAATTATTTA+GGG 0.245589 3.3:-76396356 MS.gene06701:CDS
CTCGTTTGACTAATGTCTTT+TGG 0.253639 3.3:-76396155 MS.gene06701:CDS
TTGTCACAAGTTCGAATCTA+TGG 0.257274 3.3:-76395200 MS.gene06701:CDS
ATTATTCTTAAACCCTTCTT+TGG 0.257903 3.3:+76396611 None:intergenic
GTCTTTATACAATTTAGTTT+TGG 0.305862 3.3:-76394972 MS.gene06701:CDS
GAGAGTACAAATAGTGCTTT+AGG 0.346074 3.3:-76395568 MS.gene06701:CDS
ATGTCTGATGGCGATGATTC+CGG 0.349207 3.3:-76395022 MS.gene06701:CDS
ATGTTAGCAAGGAAGGAGTT+TGG 0.356508 3.3:-76396518 MS.gene06701:CDS
ATGTGGAAATTGCTTGATAT+TGG 0.358664 3.3:-76394917 MS.gene06701:CDS
GAAGGATAAACATTAGTATA+AGG 0.359805 3.3:+76394524 None:intergenic
GGGTTTAAGAATAATGAATA+TGG 0.371754 3.3:-76396603 MS.gene06701:CDS
TTCATTTGATGAATCTCAAC+AGG 0.380743 3.3:-76394504 MS.gene06701:intron
AGGAGACCTCATAAAGTCTA+TGG 0.381794 3.3:-76396400 MS.gene06701:CDS
CTACCTTGATAATTGCTACT+TGG 0.385532 3.3:+76394185 None:intergenic
GCAACAACATCCTTCAAGTT+GGG 0.389027 3.3:-76394399 MS.gene06701:CDS
AACAGTAAAACTCTTTAAAA+CGG 0.389800 3.3:+76396634 None:intergenic
CAAGCACATGCCTTCAAAAC+AGG 0.394361 3.3:-76396711 MS.gene06701:CDS
GAAAAGGTGGCGACAATTAG+AGG 0.395021 3.3:-76395485 MS.gene06701:CDS
ATGAATACATATCAACTTCA+TGG 0.400065 3.3:-76395691 MS.gene06701:CDS
TTTAGTGGCATTTGAGAAGA+TGG 0.409481 3.3:-76395509 MS.gene06701:CDS
ATCGCCATCAGACATTGAAT+TGG 0.423362 3.3:+76395030 None:intergenic
TTCTTTGCAGTCATGCTTTG+CGG 0.424200 3.3:-76395174 MS.gene06701:CDS
CAGGATTTAGTGTAAGAAAA+GGG 0.432600 3.3:-76396692 MS.gene06701:CDS
AAGTTGAAATTGATTGAAGC+TGG 0.434164 3.3:-76396264 MS.gene06701:CDS
TGTCAATCAGTTGAAATTGA+TGG 0.438803 3.3:-76396795 MS.gene06701:CDS
ACAGGATTTAGTGTAAGAAA+AGG 0.440176 3.3:-76396693 MS.gene06701:CDS
AGGTTTAATGTTAGCAAGGA+AGG 0.442161 3.3:-76396525 MS.gene06701:CDS
ATAAAGTCTATGGTGAATTC+TGG 0.445432 3.3:-76396390 MS.gene06701:CDS
CTTATGAAAGAGCTGATTCA+AGG 0.447290 3.3:-76396569 MS.gene06701:CDS
GACATTTGACATATTTCTCA+TGG 0.451386 3.3:+76396425 None:intergenic
ACAGTAAAACTCTTTAAAAC+GGG 0.452807 3.3:+76396635 None:intergenic
TCTTCAGTTGAATTTAAGTC+AGG 0.456298 3.3:+76394863 None:intergenic
AATTCACCATAGACTTTATG+AGG 0.457499 3.3:+76396394 None:intergenic
GCATTTAAACCCCAACTTGA+AGG 0.462159 3.3:+76394389 None:intergenic
AGTTGAAATTGATTGAAGCT+GGG 0.466350 3.3:-76396263 MS.gene06701:CDS
TGCTTGATATTGGAGTTAAG+AGG 0.468751 3.3:-76394907 MS.gene06701:CDS
TGTATGCAATTCGCAGCAAA+TGG 0.471481 3.3:-76395648 MS.gene06701:CDS
TCATTTAGTAACTTGCTACA+TGG 0.476165 3.3:-76394356 MS.gene06701:CDS
CTCGTTCAATTATTTCAGCC+AGG 0.476302 3.3:-76394327 MS.gene06701:intron
GTCGGTGGATATAACAATCT+TGG 0.477476 3.3:-76396327 MS.gene06701:CDS
CCTTGATAATTGCTACTTGG+AGG 0.481492 3.3:+76394188 None:intergenic
CGCAACAAATGTCTTTGCTC+AGG 0.482031 3.3:+76396450 None:intergenic
TTGGAATTATTTAGGGGAAG+AGG 0.485109 3.3:-76396349 MS.gene06701:CDS
GGAAGCACTTCCGTGGAGAT+TGG 0.486127 3.3:-76395325 MS.gene06701:CDS
GAACAATTTCTCACAAAATG+AGG 0.486915 3.3:-76394831 MS.gene06701:CDS
TTACAGTGTGCAGCTAGATC+AGG 0.487131 3.3:-76396181 MS.gene06701:CDS
ATCAACTTCATGGTCACAAA+TGG 0.496700 3.3:-76395681 MS.gene06701:CDS
AGCAACAACATCCTTCAAGT+TGG 0.497300 3.3:-76394400 MS.gene06701:CDS
AGTGCTTTAGGAGATATTGC+AGG 0.515773 3.3:-76395556 MS.gene06701:CDS
AAGAAGAATTTCAAACCACT+TGG 0.525111 3.3:-76395723 MS.gene06701:CDS
AAGGACAAATTGCAAAGCTA+TGG 0.528165 3.3:-76396550 MS.gene06701:CDS
CAACAACATCCTTCAAGTTG+GGG 0.535019 3.3:-76394398 MS.gene06701:CDS
GCCATCAGACATTGAATTGG+AGG 0.537233 3.3:+76395033 None:intergenic
GCTTGATATTGGAGTTAAGA+GGG 0.539861 3.3:-76394906 MS.gene06701:CDS
AGAAATATGTCAAATGTCAA+AGG 0.545496 3.3:-76396420 MS.gene06701:CDS
AGCATTGCGGTAAAGAAGAC+CGG 0.548778 3.3:+76395003 None:intergenic
TGTTGAGATTCATCAAATGA+AGG 0.555454 3.3:+76394506 None:intergenic
ATTTAGTGTAAGAAAAGGGA+GGG 0.556280 3.3:-76396688 MS.gene06701:CDS
CCTCCAAGTAGCAATTATCA+AGG 0.558670 3.3:-76394188 MS.gene06701:CDS
GATTTAGTGTAAGAAAAGGG+AGG 0.567737 3.3:-76396689 MS.gene06701:CDS
TGTCACAAGTTCGAATCTAT+GGG 0.570742 3.3:-76395199 MS.gene06701:CDS
ACCTCCAATTCAATGTCTGA+TGG 0.572299 3.3:-76395034 MS.gene06701:CDS
GGTGAGGTTTAATGTTAGCA+AGG 0.579640 3.3:-76396529 MS.gene06701:CDS
CTGGTATCAAATCTTCTCAA+AGG 0.583873 3.3:-76395594 MS.gene06701:CDS
TATTTAGGGGAAGAGGTCGG+TGG 0.586341 3.3:-76396342 MS.gene06701:CDS
GGCAGGTGGAAGCACTTCCG+TGG 0.590405 3.3:-76395332 MS.gene06701:intron
AATTATTTAGGGGAAGAGGT+CGG 0.592715 3.3:-76396345 MS.gene06701:CDS
GTTGAAATTGATTGAAGCTG+GGG 0.593382 3.3:-76396262 MS.gene06701:CDS
ACTGCAGCTAACCATAGAAG+TGG 0.597365 3.3:+76395222 None:intergenic
AGAAGAATTTCAAACCACTT+GGG 0.599091 3.3:-76395722 MS.gene06701:CDS
TAATTCTCAAGTGGGTGGAG+TGG 0.599522 3.3:-76394573 MS.gene06701:CDS
CATTTGAGAAGATGGTGAAA+AGG 0.603784 3.3:-76395501 MS.gene06701:CDS
TTTAAGAATAATGAATATGG+AGG 0.604513 3.3:-76396600 MS.gene06701:CDS
CTATGCAAGTAATTCTCAAG+TGG 0.611045 3.3:-76394582 MS.gene06701:CDS
CTGAGCAAAGACATTTGTTG+CGG 0.611498 3.3:-76396449 MS.gene06701:CDS
GCAAGTAATTCTCAAGTGGG+TGG 0.619861 3.3:-76394578 MS.gene06701:CDS
TTGAGAAGATGGTGAAAAGG+TGG 0.621585 3.3:-76395498 MS.gene06701:CDS
AATTCGCAGCAAATGGAGCA+CGG 0.624767 3.3:-76395641 MS.gene06701:CDS
TATGCAAGTAATTCTCAAGT+GGG 0.627225 3.3:-76394581 MS.gene06701:CDS
CAAATTGCAAAGCTATGGTG+AGG 0.629755 3.3:-76396545 MS.gene06701:CDS
AAATATTTGGAATTATTTAG+GGG 0.632966 3.3:-76396355 MS.gene06701:CDS
AACAAATGTCTTTGCTCAGG+AGG 0.641459 3.3:+76396453 None:intergenic
TGCACACTGTAATAGAACAT+AGG 0.647292 3.3:+76396192 None:intergenic
TCACTGCTGTTTATAACACG+AGG 0.656742 3.3:+76395427 None:intergenic
ATTCATCATCTCATCCCAAG+TGG 0.657667 3.3:+76395708 None:intergenic
ATCACATCGACCAATCTCCA+CGG 0.672242 3.3:+76395315 None:intergenic
CTGCTGTTTATAACACGAGG+AGG 0.675385 3.3:+76395430 None:intergenic
AAGACTTCAGAATAGCATTG+CGG 0.719271 3.3:+76394990 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAAGAAAAAAAAAAATAA+AGG - chr3.3:76396282-76396301 MS.gene06701:CDS 10.0%
!! TAAATTATAATCAAAATACC+TGG + chr3.3:76396682-76396701 None:intergenic 15.0%
!!! AAACTTCAATTTCTTTTAAT+TGG - chr3.3:76395016-76395035 MS.gene06701:CDS 15.0%
!!! AAATATTTGGAATTATTTAG+GGG - chr3.3:76394633-76394652 MS.gene06701:intron 15.0%
!!! ACAAATATTTGGAATTATTT+AGG - chr3.3:76394631-76394650 MS.gene06701:intron 15.0%
!!! CAAATATTTGGAATTATTTA+GGG - chr3.3:76394632-76394651 MS.gene06701:intron 15.0%
!!! TTTTAAATGAGTATCTTAAT+GGG - chr3.3:76395634-76395653 MS.gene06701:CDS 15.0%
!!! TTTTTAAATGAGTATCTTAA+TGG - chr3.3:76395633-76395652 MS.gene06701:CDS 15.0%
!! TTATTTAATAAATGCATGAC+AGG - chr3.3:76395231-76395250 MS.gene06701:CDS 20.0%
!! TTTAAATGAGTATCTTAATG+GGG - chr3.3:76395635-76395654 MS.gene06701:CDS 20.0%
!! TTTAAGAATAATGAATATGG+AGG - chr3.3:76394388-76394407 MS.gene06701:CDS 20.0%
!!! AACAGTAAAACTCTTTAAAA+CGG + chr3.3:76394357-76394376 None:intergenic 20.0%
!!! CTGAAGTATTGATATTTTAT+CGG - chr3.3:76396729-76396748 MS.gene06701:CDS 20.0%
!!! GTCTTTATACAATTTAGTTT+TGG - chr3.3:76396016-76396035 MS.gene06701:intron 20.0%
!!! TGATCTGTAAATATTGTTTT+TGG + chr3.3:76395081-76395100 None:intergenic 20.0%
! AAAGTAGATTATGATTGCTT+TGG - chr3.3:76394871-76394890 MS.gene06701:CDS 25.0%
! AAGTAGATTATGATTGCTTT+GGG - chr3.3:76394872-76394891 MS.gene06701:CDS 25.0%
! ACAAATCATGTCATACTTAT+TGG + chr3.3:76394929-76394948 None:intergenic 25.0%
! AGAAATATGTCAAATGTCAA+AGG - chr3.3:76394568-76394587 MS.gene06701:CDS 25.0%
! ATGAATACATATCAACTTCA+TGG - chr3.3:76395297-76395316 MS.gene06701:CDS 25.0%
! ATTATTCTTAAACCCTTCTT+TGG + chr3.3:76394380-76394399 None:intergenic 25.0%
! GAAGGATAAACATTAGTATA+AGG + chr3.3:76396467-76396486 None:intergenic 25.0%
! GGGTTTAAGAATAATGAATA+TGG - chr3.3:76394385-76394404 MS.gene06701:CDS 25.0%
! GTATACGAGTTACAAATATT+TGG - chr3.3:76394620-76394639 MS.gene06701:intron 25.0%
! TTGCGGATTTACAATATTAA+AGG - chr3.3:76395831-76395850 MS.gene06701:intron 25.0%
! TTTATAATGATGGTAGAATG+TGG + chr3.3:76396514-76396533 None:intergenic 25.0%
!! AAAAAGCACAAAAAATCATG+TGG - chr3.3:76396054-76396073 MS.gene06701:intron 25.0%
!! TCATTGAATTTTATTGTTGC+AGG - chr3.3:76396754-76396773 MS.gene06701:CDS 25.0%
!! TTTTCTCAAAATGTCCTTTT+TGG + chr3.3:76396247-76396266 None:intergenic 25.0%
!!! AAAGCATTTTTAGAGAGTAT+GGG - chr3.3:76395045-76395064 MS.gene06701:CDS 25.0%
!!! ACAGTAAAACTCTTTAAAAC+GGG + chr3.3:76394356-76394375 None:intergenic 25.0%
!!! GTCACGATATACTTTTTATT+CGG + chr3.3:76395735-76395754 None:intergenic 25.0%
!!! TAAAGCATTTTTAGAGAGTA+TGG - chr3.3:76395044-76395063 MS.gene06701:CDS 25.0%
!!! TCACGATATACTTTTTATTC+GGG + chr3.3:76395734-76395753 None:intergenic 25.0%
AAAAAATGCTCCTTCACATT+TGG - chr3.3:76395176-76395195 MS.gene06701:CDS 30.0%
AAAAATGCTCCTTCACATTT+GGG - chr3.3:76395177-76395196 MS.gene06701:CDS 30.0%
AAGAAGAATTTCAAACCACT+TGG - chr3.3:76395265-76395284 MS.gene06701:CDS 30.0%
AAGTTGAAATTGATTGAAGC+TGG - chr3.3:76394724-76394743 MS.gene06701:intron 30.0%
AATTCACCATAGACTTTATG+AGG + chr3.3:76394597-76394616 None:intergenic 30.0%
ACAGGATTTAGTGTAAGAAA+AGG - chr3.3:76394295-76394314 MS.gene06701:intron 30.0%
ACCAATACATCTTAACAAGA+TGG - chr3.3:76395871-76395890 MS.gene06701:intron 30.0%
ACCATCTTGTTAAGATGTAT+TGG + chr3.3:76395875-76395894 None:intergenic 30.0%
AGAAGAATTTCAAACCACTT+GGG - chr3.3:76395266-76395285 MS.gene06701:CDS 30.0%
AGTAGATTATGATTGCTTTG+GGG - chr3.3:76394873-76394892 MS.gene06701:CDS 30.0%
AGTTGAAATTGATTGAAGCT+GGG - chr3.3:76394725-76394744 MS.gene06701:intron 30.0%
ATAAAGTCTATGGTGAATTC+TGG - chr3.3:76394598-76394617 MS.gene06701:CDS 30.0%
ATGATTTATCCCAACAAATG+GGG + chr3.3:76394953-76394972 None:intergenic 30.0%
ATGTGGAAATTGCTTGATAT+TGG - chr3.3:76396071-76396090 MS.gene06701:intron 30.0%
ATTTAGTGTAAGAAAAGGGA+GGG - chr3.3:76394300-76394319 MS.gene06701:intron 30.0%
CAGGATTTAGTGTAAGAAAA+GGG - chr3.3:76394296-76394315 MS.gene06701:intron 30.0%
GAACAATTTCTCACAAAATG+AGG - chr3.3:76396157-76396176 MS.gene06701:CDS 30.0%
GACATTTGACATATTTCTCA+TGG + chr3.3:76394566-76394585 None:intergenic 30.0%
GATGATTTATCCCAACAAAT+GGG + chr3.3:76394954-76394973 None:intergenic 30.0%
TATGCAAGTAATTCTCAAGT+GGG - chr3.3:76396407-76396426 MS.gene06701:CDS 30.0%
TCTTCAGTTGAATTTAAGTC+AGG + chr3.3:76396128-76396147 None:intergenic 30.0%
TGATGATTTATCCCAACAAA+TGG + chr3.3:76394955-76394974 None:intergenic 30.0%
TGTCAATCAGTTGAAATTGA+TGG - chr3.3:76394193-76394212 MS.gene06701:CDS 30.0%
TGTTGAGATTCATCAAATGA+AGG + chr3.3:76396485-76396504 None:intergenic 30.0%
TTCATTTGATGAATCTCAAC+AGG - chr3.3:76396484-76396503 MS.gene06701:CDS 30.0%
TTGTTGGGATAAATCATCAT+TGG - chr3.3:76394956-76394975 MS.gene06701:CDS 30.0%
! AGTAATCATGTATTTTCTGC+TGG - chr3.3:76395375-76395394 MS.gene06701:intron 30.0%
! AGTTTTACTGTTCCAAAGAA+GGG - chr3.3:76394365-76394384 MS.gene06701:CDS 30.0%
! GATTTTGTGAGTATATACCA+AGG + chr3.3:76395604-76395623 None:intergenic 30.0%
! GGATGCAAAGATATTTTTCT+TGG - chr3.3:76394214-76394233 MS.gene06701:CDS 30.0%
! TTGCAGGAATCTTGTAATTT+TGG - chr3.3:76396770-76396789 MS.gene06701:CDS 30.0%
!! AGGAATCTTGTAATTTTGGT+CGG - chr3.3:76396774-76396793 MS.gene06701:CDS 30.0%
!! ATGTCTCTCACAATTTTTAG+TGG - chr3.3:76395464-76395483 MS.gene06701:CDS 30.0%
!! TACACTAAATCCTGTTTTGA+AGG + chr3.3:76394290-76394309 None:intergenic 30.0%
!! TCATTTAGTAACTTGCTACA+TGG - chr3.3:76396632-76396651 MS.gene06701:CDS 30.0%
AAGACTTCAGAATAGCATTG+CGG + chr3.3:76396001-76396020 None:intergenic 35.0%
AAGGACAAATTGCAAAGCTA+TGG - chr3.3:76394438-76394457 MS.gene06701:intron 35.0%
AATTATTTAGGGGAAGAGGT+CGG - chr3.3:76394643-76394662 MS.gene06701:intron 35.0%
ACAGATCAAGATCCATCTAT+GGG - chr3.3:76395093-76395112 MS.gene06701:intron 35.0%
AGGTTTAATGTTAGCAAGGA+AGG - chr3.3:76394463-76394482 MS.gene06701:intron 35.0%
ATCAACTTCATGGTCACAAA+TGG - chr3.3:76395307-76395326 MS.gene06701:CDS 35.0%
CAAGATGGTCAAAAAATGCA+AGG - chr3.3:76395886-76395905 MS.gene06701:intron 35.0%
CATTGGCAAAATGTCATGTT+TGG - chr3.3:76394973-76394992 MS.gene06701:CDS 35.0%
CATTTGAGAAGATGGTGAAA+AGG - chr3.3:76395487-76395506 MS.gene06701:CDS 35.0%
CTATGCAAGTAATTCTCAAG+TGG - chr3.3:76396406-76396425 MS.gene06701:CDS 35.0%
CTGGTATCAAATCTTCTCAA+AGG - chr3.3:76395394-76395413 MS.gene06701:intron 35.0%
GATTTAGTGTAAGAAAAGGG+AGG - chr3.3:76394299-76394318 MS.gene06701:intron 35.0%
GCTTGATATTGGAGTTAAGA+GGG - chr3.3:76396082-76396101 MS.gene06701:intron 35.0%
GTTGAAATTGATTGAAGCTG+GGG - chr3.3:76394726-76394745 MS.gene06701:intron 35.0%
TACAGATCAAGATCCATCTA+TGG - chr3.3:76395092-76395111 MS.gene06701:intron 35.0%
TGCACACTGTAATAGAACAT+AGG + chr3.3:76394799-76394818 None:intergenic 35.0%
TGCTTGATATTGGAGTTAAG+AGG - chr3.3:76396081-76396100 MS.gene06701:intron 35.0%
TGTCACAAGTTCGAATCTAT+GGG - chr3.3:76395789-76395808 MS.gene06701:intron 35.0%
TTGAGATATCCCAAATGTGA+AGG + chr3.3:76395189-76395208 None:intergenic 35.0%
TTGGAATTATTTAGGGGAAG+AGG - chr3.3:76394639-76394658 MS.gene06701:intron 35.0%
TTGTCACAAGTTCGAATCTA+TGG - chr3.3:76395788-76395807 MS.gene06701:intron 35.0%
TTTAGTGGCATTTGAGAAGA+TGG - chr3.3:76395479-76395498 MS.gene06701:CDS 35.0%
! CTACCTTGATAATTGCTACT+TGG + chr3.3:76396806-76396825 None:intergenic 35.0%
! CTCGTTTGACTAATGTCTTT+TGG - chr3.3:76394833-76394852 MS.gene06701:CDS 35.0%
! CTTATGAAAGAGCTGATTCA+AGG - chr3.3:76394419-76394438 MS.gene06701:intron 35.0%
! CTTGTTAAGATGTATTGGTC+AGG + chr3.3:76395870-76395889 None:intergenic 35.0%
! GAGAGTACAAATAGTGCTTT+AGG - chr3.3:76395420-76395439 MS.gene06701:intron 35.0%
! GAGTTTTACTGTTCCAAAGA+AGG - chr3.3:76394364-76394383 MS.gene06701:CDS 35.0%
!! ACTAATGTCTTTTGGAGAGA+TGG - chr3.3:76394841-76394860 MS.gene06701:CDS 35.0%
!!! TTGTGCTTTTTTGTCCTCTT+GGG + chr3.3:76396045-76396064 None:intergenic 35.0%
!!! TTTAGTTTTGGAATCCCAAG+AGG - chr3.3:76396028-76396047 MS.gene06701:intron 35.0%
!!! TTTGTGCTTTTTTGTCCTCT+TGG + chr3.3:76396046-76396065 None:intergenic 35.0%
AACAAATGTCTTTGCTCAGG+AGG + chr3.3:76394538-76394557 None:intergenic 40.0%
AATGAGTATCTTAATGGGGC+AGG - chr3.3:76395639-76395658 MS.gene06701:CDS 40.0%
ACCTCCAATTCAATGTCTGA+TGG - chr3.3:76395954-76395973 MS.gene06701:intron 40.0%
AGCAACAACATCCTTCAAGT+TGG - chr3.3:76396588-76396607 MS.gene06701:CDS 40.0%
AGGAGACCTCATAAAGTCTA+TGG - chr3.3:76394588-76394607 MS.gene06701:CDS 40.0%
ATCGCCATCAGACATTGAAT+TGG + chr3.3:76395961-76395980 None:intergenic 40.0%
ATGTTAGCAAGGAAGGAGTT+TGG - chr3.3:76394470-76394489 MS.gene06701:intron 40.0%
ATTCATCATCTCATCCCAAG+TGG + chr3.3:76395283-76395302 None:intergenic 40.0%
CAAATTGCAAAGCTATGGTG+AGG - chr3.3:76394443-76394462 MS.gene06701:intron 40.0%
CCTCCAAGTAGCAATTATCA+AGG - chr3.3:76396800-76396819 MS.gene06701:CDS 40.0%
CTCGTTCAATTATTTCAGCC+AGG - chr3.3:76396661-76396680 MS.gene06701:CDS 40.0%
GCATTTAAACCCCAACTTGA+AGG + chr3.3:76396602-76396621 None:intergenic 40.0%
GGTGAGGTTTAATGTTAGCA+AGG - chr3.3:76394459-76394478 MS.gene06701:intron 40.0%
GTCGGTGGATATAACAATCT+TGG - chr3.3:76394661-76394680 MS.gene06701:intron 40.0%
GTTTCACAAAGACGAAAGGA+AGG - chr3.3:76396210-76396229 MS.gene06701:CDS 40.0%
TGTATGCAATTCGCAGCAAA+TGG - chr3.3:76395340-76395359 MS.gene06701:intron 40.0%
TTCTTTGCAGTCATGCTTTG+CGG - chr3.3:76395814-76395833 MS.gene06701:intron 40.0%
TTGAGAAGATGGTGAAAAGG+TGG - chr3.3:76395490-76395509 MS.gene06701:CDS 40.0%
! ATGATTTGTGCCCCATTTGT+TGG - chr3.3:76394940-76394959 MS.gene06701:CDS 40.0%
! CCTTGATAATTGCTACTTGG+AGG + chr3.3:76396803-76396822 None:intergenic 40.0%
! CTGAGCAAAGACATTTGTTG+CGG - chr3.3:76394539-76394558 MS.gene06701:CDS 40.0%
! GAAGGATGTTGTTGCTGTTA+AGG + chr3.3:76396584-76396603 None:intergenic 40.0%
! GCAACAACATCCTTCAAGTT+GGG - chr3.3:76396589-76396608 MS.gene06701:CDS 40.0%
! GTTTGGTTGTGCTTTGTTGT+TGG - chr3.3:76394990-76395009 MS.gene06701:CDS 40.0%
! TCACTGCTGTTTATAACACG+AGG + chr3.3:76395564-76395583 None:intergenic 40.0%
! TGATTTGTGCCCCATTTGTT+GGG - chr3.3:76394941-76394960 MS.gene06701:CDS 40.0%
!! AGTGCTTTAGGAGATATTGC+AGG - chr3.3:76395432-76395451 MS.gene06701:CDS 40.0%
!! CAACAACATCCTTCAAGTTG+GGG - chr3.3:76396590-76396609 MS.gene06701:CDS 40.0%
!! TTTTGACTCAGCCACTTCTA+TGG - chr3.3:76395755-76395774 MS.gene06701:intron 40.0%
AACTCTACGACATGCATCCT+TGG - chr3.3:76395584-76395603 MS.gene06701:CDS 45.0%
AATTCGCAGCAAATGGAGCA+CGG - chr3.3:76395347-76395366 MS.gene06701:intron 45.0%
ACTGCAGCTAACCATAGAAG+TGG + chr3.3:76395769-76395788 None:intergenic 45.0%
AGCATTGCGGTAAAGAAGAC+CGG + chr3.3:76395988-76396007 None:intergenic 45.0%
AGGTCTAGTGTTCGCCAAAA+AGG - chr3.3:76396230-76396249 MS.gene06701:CDS 45.0%
ATCACATCGACCAATCTCCA+CGG + chr3.3:76395676-76395695 None:intergenic 45.0%
CAAGCACATGCCTTCAAAAC+AGG - chr3.3:76394277-76394296 MS.gene06701:intron 45.0%
CACAGTCGATGACGTGTATT+TGG + chr3.3:76395141-76395160 None:intergenic 45.0%
CCAATTGCTTTGCCCATAGA+TGG + chr3.3:76395108-76395127 None:intergenic 45.0%
CCATCTATGGGCAAAGCAAT+TGG - chr3.3:76395105-76395124 MS.gene06701:intron 45.0%
CCTCGTTTCACAAAGACGAA+AGG - chr3.3:76396206-76396225 MS.gene06701:CDS 45.0%
CCTTTCGTCTTTGTGAAACG+AGG + chr3.3:76396209-76396228 None:intergenic 45.0%
CGCAACAAATGTCTTTGCTC+AGG + chr3.3:76394541-76394560 None:intergenic 45.0%
GAAAAGGTGGCGACAATTAG+AGG - chr3.3:76395503-76395522 MS.gene06701:CDS 45.0%
GCAAGTAATTCTCAAGTGGG+TGG - chr3.3:76396410-76396429 MS.gene06701:CDS 45.0%
GCCATCAGACATTGAATTGG+AGG + chr3.3:76395958-76395977 None:intergenic 45.0%
TAATTCTCAAGTGGGTGGAG+TGG - chr3.3:76396415-76396434 MS.gene06701:CDS 45.0%
TTACAGTGTGCAGCTAGATC+AGG - chr3.3:76394807-76394826 MS.gene06701:CDS 45.0%
! ATGTCTGATGGCGATGATTC+CGG - chr3.3:76395966-76395985 MS.gene06701:intron 45.0%
! CTGCTGTTTATAACACGAGG+AGG + chr3.3:76395561-76395580 None:intergenic 45.0%
!! AAATATTAAATTTATAATGA+TGG + chr3.3:76396524-76396543 None:intergenic 5.0%
GAGTATCTTAATGGGGCAGG+TGG - chr3.3:76395642-76395661 MS.gene06701:CDS 50.0%
TATTTAGGGGAAGAGGTCGG+TGG - chr3.3:76394646-76394665 MS.gene06701:intron 50.0%
! CACGTCATCGACTGTGTTTG+TGG - chr3.3:76395145-76395164 MS.gene06701:intron 50.0%
!! GGAAGCACTTCCGTGGAGAT+TGG - chr3.3:76395663-76395682 MS.gene06701:CDS 55.0%
!! GGCAGGTGGAAGCACTTCCG+TGG - chr3.3:76395656-76395675 MS.gene06701:CDS 65.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 76394178 76396832 76394178 ID=MS.gene06701
chr3.3 mRNA 76394178 76396832 76394178 ID=MS.gene06701.t1;Parent=MS.gene06701
chr3.3 exon 76396148 76396832 76396148 ID=MS.gene06701.t1.exon1;Parent=MS.gene06701.t1
chr3.3 CDS 76396148 76396832 76396148 ID=cds.MS.gene06701.t1;Parent=MS.gene06701.t1
chr3.3 exon 76395431 76395757 76395431 ID=MS.gene06701.t1.exon2;Parent=MS.gene06701.t1
chr3.3 CDS 76395431 76395757 76395431 ID=cds.MS.gene06701.t1;Parent=MS.gene06701.t1
chr3.3 exon 76395158 76395349 76395158 ID=MS.gene06701.t1.exon3;Parent=MS.gene06701.t1
chr3.3 CDS 76395158 76395349 76395158 ID=cds.MS.gene06701.t1;Parent=MS.gene06701.t1
chr3.3 exon 76394801 76395067 76394801 ID=MS.gene06701.t1.exon4;Parent=MS.gene06701.t1
chr3.3 CDS 76394801 76395067 76394801 ID=cds.MS.gene06701.t1;Parent=MS.gene06701.t1
chr3.3 exon 76394505 76394620 76394505 ID=MS.gene06701.t1.exon5;Parent=MS.gene06701.t1
chr3.3 CDS 76394505 76394620 76394505 ID=cds.MS.gene06701.t1;Parent=MS.gene06701.t1
chr3.3 exon 76394328 76394420 76394328 ID=MS.gene06701.t1.exon6;Parent=MS.gene06701.t1
chr3.3 CDS 76394328 76394420 76394328 ID=cds.MS.gene06701.t1;Parent=MS.gene06701.t1
chr3.3 exon 76394178 76394234 76394178 ID=MS.gene06701.t1.exon7;Parent=MS.gene06701.t1
chr3.3 CDS 76394178 76394234 76394178 ID=cds.MS.gene06701.t1;Parent=MS.gene06701.t1
Gene Sequence

>MS.gene06701

ATGGAGATAAATGAATGTCAATCAGTTGAAATTGATGGATGCAAAGATATTTTTCTTGGTCAAGTTGTGAATAACAAAGATGAAGCTTATAACTTATATCAAGCACATGCCTTCAAAACAGGATTTAGTGTAAGAAAAGGGAGGGAGTTATATTATGATAATGAGAGAAAAATCACCCGTTTTAAAGAGTTTTACTGTTCCAAAGAAGGGTTTAAGAATAATGAATATGGAGGTGAAGTGTCTTATGAAAGAGCTGATTCAAGGACAAATTGCAAAGCTATGGTGAGGTTTAATGTTAGCAAGGAAGGAGTTTGGAAAGTTACAAAGTTTGTATTAGATCATAATCATCAACTTGTACCTCCTGAGCAAAGACATTTGTTGCGGTCCATGAGAAATATGTCAAATGTCAAAGGAGACCTCATAAAGTCTATGGTGAATTCTGGTATACGAGTTACAAATATTTGGAATTATTTAGGGGAAGAGGTCGGTGGATATAACAATCTTGGTATAACATTGAAAGATATGCATAATTATGTCTACACTGAAAAGTTGAAATTGATTGAAGCTGGGGATGCTCAATCTTTAGTAAATAACTTACAAAATAGACAAGCACAAGATCCTATGTTCTATTACAGTGTGCAGCTAGATCAGGAATCTCGTTTGACTAATGTCTTTTGGAGAGATGGTAAATCTAAAGTAGATTATGATTGCTTTGGGGATGTTGTGATATTTGACACTACTTATCGTACCAATAAGTATGACATGATTTGTGCCCCATTTGTTGGGATAAATCATCATTGGCAAAATGTCATGTTTGGTTGTGCTTTGTTGTTGGATGAAACTTCAATTTCTTTTAATTGGCTGTTTAAAGCATTTTTAGAGAGTATGGGAAACAAGCAACCAAAAACAATATTTACAGATCAAGATCCATCTATGGGCAAAGCAATTGGAGAAGTAATGCCAAATACACGTCATCGACTGTGTTTGTGGCATATATCAAAAAATGCTCCTTCACATTTGGGATATCTCAATTCTAATAACAAGTTTCAAAGCTTATTTAATAAATGCATGACAGGTTGTGACTCAGAAGAAGAATTTCAAACCACTTGGGATGAGATGATGAATACATATCAACTTCATGGTCACAAATGGTTAAGAAGCATGTATGCAATTCGCAGCAAATGGAGCACGGCATATAGTAATCATGTATTTTCTGCTGGTATCAAATCTTCTCAAAGGAGTGAGAGTACAAATAGTGCTTTAGGAGATATTGCAGGAAAAACAACATGTCTCTCACAATTTTTAGTGGCATTTGAGAAGATGGTGAAAAGGTGGCGACAATTAGAGGTTGAGAACGAATTCAAAAATAGTCAGAGTGCGCCTCCTCGTGTTATAAACAGCAGTGAAACTCTACGACATGCATCCTTGGTATATACTCACAAAATCTTTACACTTTTTTTAAATGAGTATCTTAATGGGGCAGGTGGAAGCACTTCCGTGGAGATTGGTCGATGTGATAATGTGTCATATCATGAAGTTGTGTTGAACATCATCCCGAATAAAAAGTATATCGTGACTTTTGACTCAGCCACTTCTATGGTTAGCTGCAGTTGTCACAAGTTCGAATCTATGGGCATTCTTTGCAGTCATGCTTTGCGGATTTACAATATTAAAGGTATTTTAAAAATACCTGACCAATACATCTTAACAAGATGGTCAAAAAATGCAAGGTCTGTGATTTATGAGCATGTAAATAAGAGTTCAGAAGAAGATTCTACCTCCAATTCAATGTCTGATGGCGATGATTCCGGTCTTCTTTACCGCAATGCTATTCTGAAGTCTTTATACAATTTAGTTTTGGAATCCCAAGAGGACAAAAAAGCACAAAAAATCATGTGGAAATTGCTTGATATTGGAGTTAAGAGGGTTCGAGAATGTGTCAGCAAACCTGACTTAAATTCAACTGAAGAAAACATTGAGAACAATTTCTCACAAAATGAGGATAATGAAAGTTGTACAGTTTTGAATCCTCGTTTCACAAAGACGAAAGGAAGGTCTAGTGTTCGCCAAAAAGGACATTTTGAGAAAAGAAAACGATCAACTACAAAAGAAAAAAAAAAATAAAGGTGAAAGATTAAACATATTTTTTTATAGAGTACATTATAGTTATATATTTAATGTAAGAACTATTCAATATCTGCTTTATTTTCAGAGAAACGTAATGAAGACTATGCAAGTAATTCTCAAGTGGGTGGAGTGGCAAATGTTCAAAATTGCACAAATGAACCTTATACTAATGTTTATCCTTCATTTGATGAATCTCAACAGGTTTACCACATTCTACCATCATTATAAATTTAATATTTCTTACAATTGTATTTTAGCTGACAATATTTTCGATATCCTTAACAGCAACAACATCCTTCAAGTTGGGGTTTAAATGCTACATCAACTTCATTTAGTAACTTGCTACATGGAATGAACTCGTTCAATTATTTCAGCCAGGTATTTTGATTATAATTTATTCTTGTTTTTTAAATGATATATTTGACTGAAGTATTGATATTTTATCGGTATCATTGAATTTTATTGTTGCAGGAATCTTGTAATTTTGGTCGGATACCTCCAAGTAGCAATTATCAAGGTAGACAATGA

Protein sequence

>MS.gene06701.t1

MEINECQSVEIDGCKDIFLGQVVNNKDEAYNLYQAHAFKTGFSVRKGRELYYDNERKITRFKEFYCSKEGFKNNEYGGEVSYERADSRTNCKAMVRFNVSKEGVWKVTKFVLDHNHQLVPPEQRHLLRSMRNMSNVKGDLIKSMVNSGIRVTNIWNYLGEEVGGYNNLGITLKDMHNYVYTEKLKLIEAGDAQSLVNNLQNRQAQDPMFYYSVQLDQESRLTNVFWRDGCDSEEEFQTTWDEMMNTYQLHGHKWLRSMYAIRSKWSTAYSNHVFSAGIKSSQRSESTNSALGDIAGKTTCLSQFLVAFEKMVKRWRQLEVENEFKNSQSAPPRVINSSGSTSVEIGRCDNVSYHEVVLNIIPNKKYIVTFDSATSMVSCSCHKFESMGILCSHALRIYNIKEEDSTSNSMSDGDDSGLLYRNAILKSLYNLVLESQEDKKAQKIMWKLLDIGVKRVRECVSKPDLNSTEENIENNFSQNEDNESCTVLNPQKRNEDYASNSQVGGVANVQNCTNEPYTNVYPSFDESQQQQHPSSWGLNATSTSFSNLLHGMNSFNYFSQESCNFGRIPPSSNYQGRQ