Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067273.t1 | XP_003604651.1 | 74.4 | 363 | 26 | 4 | 1 | 297 | 72 | 433 | 6.30E-132 | 480.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067273.t1 | G7JN22 | 74.4 | 363 | 26 | 4 | 1 | 297 | 72 | 433 | 4.6e-132 | 480.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049435 | MS.gene067273 | 0.815438 | 9.24E-52 | -1.69E-46 |
| MS.gene049850 | MS.gene067273 | 0.815852 | 7.47E-52 | -1.69E-46 |
| MS.gene050156 | MS.gene067273 | 0.828026 | 1.13E-54 | -1.69E-46 |
| MS.gene050442 | MS.gene067273 | 0.808749 | 2.66E-50 | -1.69E-46 |
| MS.gene050826 | MS.gene067273 | 0.804161 | 2.47E-49 | -1.69E-46 |
| MS.gene051147 | MS.gene067273 | 0.801481 | 8.82E-49 | -1.69E-46 |
| MS.gene05125 | MS.gene067273 | 0.805066 | 1.60E-49 | -1.69E-46 |
| MS.gene051800 | MS.gene067273 | 0.815801 | 7.67E-52 | -1.69E-46 |
| MS.gene052190 | MS.gene067273 | 0.827748 | 1.32E-54 | -1.69E-46 |
| MS.gene052333 | MS.gene067273 | 0.809749 | 1.62E-50 | -1.69E-46 |
| MS.gene052773 | MS.gene067273 | 0.801866 | 7.36E-49 | -1.69E-46 |
| MS.gene052863 | MS.gene067273 | 0.805609 | 1.23E-49 | -1.69E-46 |
| MS.gene053147 | MS.gene067273 | 0.80953 | 1.81E-50 | -1.69E-46 |
| MS.gene053166 | MS.gene067273 | 0.829778 | 4.26E-55 | -1.69E-46 |
| MS.gene053966 | MS.gene067273 | 0.814801 | 1.28E-51 | -1.69E-46 |
| MS.gene05415 | MS.gene067273 | 0.804839 | 1.78E-49 | -1.69E-46 |
| MS.gene054291 | MS.gene067273 | -0.83003 | 3.69E-55 | -1.69E-46 |
| MS.gene054467 | MS.gene067273 | 0.844993 | 5.36E-59 | -1.69E-46 |
| MS.gene054468 | MS.gene067273 | 0.82745 | 1.55E-54 | -1.69E-46 |
| MS.gene054581 | MS.gene067273 | 0.814801 | 1.28E-51 | -1.69E-46 |
| MS.gene055701 | MS.gene067273 | 0.802569 | 5.27E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene067273 | 0.835739 | 1.41E-56 | -1.69E-46 |
| MS.gene055926 | MS.gene067273 | 0.815661 | 8.25E-52 | -1.69E-46 |
| MS.gene057026 | MS.gene067273 | 0.824699 | 7.01E-54 | -1.69E-46 |
| MS.gene058625 | MS.gene067273 | 0.808554 | 2.92E-50 | -1.69E-46 |
| MS.gene058829 | MS.gene067273 | 0.823986 | 1.03E-53 | -1.69E-46 |
| MS.gene060011 | MS.gene067273 | 0.805251 | 1.46E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067273.t1 | MTR_4g015550 | 76.033 | 363 | 20 | 4 | 1 | 297 | 72 | 433 | 0.0 | 510 |
| MS.gene067273.t1 | MTR_4g015550 | 75.000 | 48 | 10 | 1 | 252 | 297 | 448 | 495 | 1.85e-12 | 67.8 |
| MS.gene067273.t1 | MTR_4g015550 | 76.221 | 307 | 18 | 3 | 1 | 253 | 72 | 377 | 6.80e-155 | 437 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067273.t1 | AT5G01260 | 38.525 | 244 | 122 | 4 | 10 | 239 | 75 | 304 | 5.96e-47 | 160 |
| MS.gene067273.t1 | AT5G01260 | 38.367 | 245 | 123 | 4 | 10 | 240 | 75 | 305 | 1.67e-46 | 160 |
| MS.gene067273.t1 | AT5G01260 | 38.397 | 237 | 118 | 4 | 10 | 232 | 75 | 297 | 3.23e-46 | 157 |
Find 61 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGATCCTAAACTTGGTTTA+TGG | 0.208760 | 4.2:-85647489 | MS.gene067273:CDS |
| GAAAAGAAGGTGATATTATT+TGG | 0.215755 | 4.2:-85646959 | MS.gene067273:CDS |
| TGTTCATAGTTTCCCATGTT+TGG | 0.263305 | 4.2:+85646913 | None:intergenic |
| CGCAAGGCATTACCATGAAT+TGG | 0.309591 | 4.2:+85645272 | None:intergenic |
| CTATACAAGTTGATACTAAA+AGG | 0.314326 | 4.2:-85646981 | MS.gene067273:CDS |
| CTACTAAAAGATTGCGACTT+TGG | 0.316881 | 4.2:-85647535 | MS.gene067273:CDS |
| GGAGAACAGTTTCTAATAGT+TGG | 0.352666 | 4.2:-85647514 | MS.gene067273:CDS |
| AATAATTGTTCTTGAGGATT+GGG | 0.356549 | 4.2:-85646889 | MS.gene067273:CDS |
| GGGTTCCATAAACCAAGTTT+AGG | 0.360824 | 4.2:+85647484 | None:intergenic |
| GCTATGTTTGCCGAAAATAT+AGG | 0.378453 | 4.2:-85646780 | MS.gene067273:CDS |
| AGAACCGGAGGTTCTTCATT+TGG | 0.386077 | 4.2:+85646819 | None:intergenic |
| AACATAGCCATTGGCTTCTC+TGG | 0.387237 | 4.2:+85646795 | None:intergenic |
| GCATGAAGAACAGTTTCATT+TGG | 0.387821 | 4.2:-85645327 | MS.gene067273:CDS |
| CATGGTCTGATGGTCATATA+TGG | 0.388044 | 4.2:-85647441 | MS.gene067273:CDS |
| AGGTGATATTATTTGGCAAC+CGG | 0.392152 | 4.2:-85646952 | MS.gene067273:CDS |
| GAATAATTGTTCTTGAGGAT+TGG | 0.398780 | 4.2:-85646890 | MS.gene067273:CDS |
| GTCAATGGTAATGCATCTAA+AGG | 0.413839 | 4.2:+85647463 | None:intergenic |
| GGAGGTCCTGTTCTTGTACC+TGG | 0.437575 | 4.2:-85646600 | MS.gene067273:CDS |
| GTTGGAGATGATCCTAAACT+TGG | 0.469158 | 4.2:-85647496 | MS.gene067273:CDS |
| TTCTGATCCTGAGTTTCAAA+AGG | 0.469360 | 4.2:+85646495 | None:intergenic |
| ATTAAGCCAGGTACAAGAAC+AGG | 0.470486 | 4.2:+85646594 | None:intergenic |
| ATTGGCTTCTCTGGTAGAAC+CGG | 0.470881 | 4.2:+85646804 | None:intergenic |
| TCTTCTTCAACAACTTCACT+TGG | 0.473052 | 4.2:+85646546 | None:intergenic |
| GAACAGAATAATTGTTCTTG+AGG | 0.486338 | 4.2:-85646895 | MS.gene067273:CDS |
| TCAAACTCAGAGCCAATTCA+TGG | 0.486763 | 4.2:-85645284 | None:intergenic |
| ATCATGTGTTCAGGATATGC+TGG | 0.508543 | 4.2:-85647018 | MS.gene067273:intron |
| TCAATGGTAATGCATCTAAA+GGG | 0.510357 | 4.2:+85647464 | None:intergenic |
| TGCCGAAAATATAGGTTCCT+CGG | 0.514374 | 4.2:-85646772 | MS.gene067273:CDS |
| TTGATACTAAAAGGAAAAGA+AGG | 0.516269 | 4.2:-85646972 | MS.gene067273:CDS |
| TTGGCATCAACAATGGAAGA+AGG | 0.534614 | 4.2:-85645308 | MS.gene067273:CDS |
| TCAACCAAATGAAGAACCTC+CGG | 0.536881 | 4.2:-85646823 | MS.gene067273:CDS |
| TATTATTTGGCAACCGGGGT+CGG | 0.540226 | 4.2:-85646946 | MS.gene067273:CDS |
| TCAGTCAACGGTATTAAGCC+AGG | 0.540479 | 4.2:+85646582 | None:intergenic |
| TGTTCGCTTTGTTGAACTTG+AGG | 0.544102 | 4.2:+85647687 | None:intergenic |
| CGGATCGAGTAATCCAAACA+TGG | 0.544820 | 4.2:-85646926 | MS.gene067273:CDS |
| AGAACTTCAGAAAATAATAG+AGG | 0.549395 | 4.2:-85646859 | MS.gene067273:CDS |
| GTTTCAAAAGGTTCAACTGA+TGG | 0.554167 | 4.2:+85646507 | None:intergenic |
| AAGAGTGAAGAATCTGAAGA+TGG | 0.555921 | 4.2:-85646696 | MS.gene067273:CDS |
| TGGATTACTCGATCCGACCC+CGG | 0.556713 | 4.2:+85646933 | None:intergenic |
| TGACCATCAGACCATGTCAA+TGG | 0.564403 | 4.2:+85647448 | None:intergenic |
| GTTTCATTTGGCATCAACAA+TGG | 0.568666 | 4.2:-85645315 | MS.gene067273:CDS |
| GGCTTCTCTGGTAGAACCGG+AGG | 0.575456 | 4.2:+85646807 | None:intergenic |
| TCATATATGGACTGTTGAGC+TGG | 0.575955 | 4.2:-85647428 | MS.gene067273:intron |
| CCAGCTTCTTCTTCAGTCAA+CGG | 0.590556 | 4.2:+85646570 | None:intergenic |
| TGTGTTCAGGATATGCTGGC+TGG | 0.594337 | 4.2:-85647014 | MS.gene067273:intron |
| TGGCATCAACAATGGAAGAA+GGG | 0.602203 | 4.2:-85645307 | MS.gene067273:CDS |
| TAGATGCATTACCATTGACA+TGG | 0.613812 | 4.2:-85647459 | MS.gene067273:CDS |
| GGTGATATTATTTGGCAACC+GGG | 0.626598 | 4.2:-85646951 | MS.gene067273:CDS |
| TGAAAATGCTCAGTTAAGCA+AGG | 0.630052 | 4.2:-85645414 | MS.gene067273:intron |
| ACTTCAGAAAATAATAGAGG+AGG | 0.634094 | 4.2:-85646856 | MS.gene067273:CDS |
| TTACCATTGACATGGTCTGA+TGG | 0.637869 | 4.2:-85647451 | MS.gene067273:CDS |
| GGTTCTACCAGAGAAGCCAA+TGG | 0.652910 | 4.2:-85646802 | MS.gene067273:CDS |
| CCGTTGACTGAAGAAGAAGC+TGG | 0.654789 | 4.2:-85646570 | MS.gene067273:CDS |
| GTGATATTATTTGGCAACCG+GGG | 0.662994 | 4.2:-85646950 | MS.gene067273:CDS |
| TTCAACTGATGGCTCTACCA+CGG | 0.664103 | 4.2:+85646518 | None:intergenic |
| GGATCGAGTAATCCAAACAT+GGG | 0.665164 | 4.2:-85646925 | MS.gene067273:CDS |
| ACTTTCTGTGAGATCCTCCG+AGG | 0.674643 | 4.2:+85646755 | None:intergenic |
| CGAAAATATAGGTTCCTCGG+AGG | 0.707768 | 4.2:-85646769 | MS.gene067273:CDS |
| TCAGGATCAGAATATACCAG+AGG | 0.719056 | 4.2:-85646484 | MS.gene067273:intron |
| TGTTGAAGAAGAAAAGACCG+TGG | 0.738151 | 4.2:-85646535 | MS.gene067273:CDS |
| TTAGTAGCTGAAACTCAACA+CGG | 0.751100 | 4.2:+85647551 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATGAGAAAATTTGTA+TGG | + | chr4.2:85647323-85647342 | None:intergenic | 15.0% |
| !! | ATTAATGATAACAATCAATT+TGG | + | chr4.2:85646789-85646808 | None:intergenic | 15.0% |
| !! | TCTTAATTTCAAAGATTTAA+CGG | + | chr4.2:85645838-85645857 | None:intergenic | 15.0% |
| !! | TTGGAAACAAAATAAAAAAA+AGG | + | chr4.2:85645692-85645711 | None:intergenic | 15.0% |
| !!! | AACACACAAATTAAAATTTT+AGG | + | chr4.2:85645400-85645419 | None:intergenic | 15.0% |
| !!! | ACACACAAATTAAAATTTTA+GGG | + | chr4.2:85645399-85645418 | None:intergenic | 15.0% |
| !!! | TTGCACATTTTTTTAATATA+TGG | - | chr4.2:85647490-85647509 | MS.gene067273:CDS | 15.0% |
| !! | CAAATCATTAAGATATTGTT+TGG | - | chr4.2:85645603-85645622 | MS.gene067273:intron | 20.0% |
| !! | CAGCGTTAAAAAATAAAAAA+GGG | - | chr4.2:85646337-85646356 | MS.gene067273:intron | 20.0% |
| !!! | AAATAAATTGTGTGTTGTTA+TGG | + | chr4.2:85646925-85646944 | None:intergenic | 20.0% |
| !!! | ATATAATTTTAGTGCTTGTT+TGG | + | chr4.2:85647285-85647304 | None:intergenic | 20.0% |
| ! | AACAAACAAGTATGTTCTAA+TGG | - | chr4.2:85645325-85645344 | MS.gene067273:CDS | 25.0% |
| ! | AATAATTGTTCTTGAGGATT+GGG | - | chr4.2:85646104-85646123 | MS.gene067273:intron | 25.0% |
| ! | AGAACTTCAGAAAATAATAG+AGG | - | chr4.2:85646134-85646153 | MS.gene067273:intron | 25.0% |
| ! | ATGATGATACAAACAAAACA+AGG | + | chr4.2:85646651-85646670 | None:intergenic | 25.0% |
| ! | GAAAAGAAGGTGATATTATT+TGG | - | chr4.2:85646034-85646053 | MS.gene067273:intron | 25.0% |
| ! | GATTATATATGTACGAAACA+AGG | + | chr4.2:85646727-85646746 | None:intergenic | 25.0% |
| ! | GCAGCGTTAAAAAATAAAAA+AGG | - | chr4.2:85646336-85646355 | MS.gene067273:intron | 25.0% |
| ! | TATAAACAACCACTACATAA+CGG | + | chr4.2:85645949-85645968 | None:intergenic | 25.0% |
| ! | TATATAATCAATGCATCTTG+AGG | - | chr4.2:85646738-85646757 | MS.gene067273:CDS | 25.0% |
| ! | TTGATACTAAAAGGAAAAGA+AGG | - | chr4.2:85646021-85646040 | MS.gene067273:intron | 25.0% |
| !! | ATATTTTTCATCATGTGTTC+AGG | - | chr4.2:85645966-85645985 | MS.gene067273:intron | 25.0% |
| !! | CTTTTAGTATCAACTTGTAT+AGG | + | chr4.2:85646014-85646033 | None:intergenic | 25.0% |
| !! | TTTGGTCGAAAACATTTTTA+AGG | - | chr4.2:85645621-85645640 | MS.gene067273:intron | 25.0% |
| !!! | ACATTGGTTTAAATGATTAC+TGG | + | chr4.2:85647464-85647483 | None:intergenic | 25.0% |
| !!! | CTATACAAGTTGATACTAAA+AGG | - | chr4.2:85646012-85646031 | MS.gene067273:intron | 25.0% |
| !!! | GGTTTTAATAAAAAGGTTTG+CGG | + | chr4.2:85647100-85647119 | None:intergenic | 25.0% |
| !!! | GTTTGTTAAGTTTTTGTAAC+AGG | + | chr4.2:85647130-85647149 | None:intergenic | 25.0% |
| !!! | TATTTTAATCTGAAACAAGC+TGG | - | chr4.2:85646940-85646959 | MS.gene067273:CDS | 25.0% |
| !!! | TTTTTATTTTTTAACGCTGC+AGG | + | chr4.2:85646336-85646355 | None:intergenic | 25.0% |
| AAATAAAAAAGGGACGATTG+TGG | - | chr4.2:85646347-85646366 | MS.gene067273:intron | 30.0% | |
| AAATGTGCAAGTTTACACAT+TGG | + | chr4.2:85647480-85647499 | None:intergenic | 30.0% | |
| ACTTCAGAAAATAATAGAGG+AGG | - | chr4.2:85646137-85646156 | MS.gene067273:intron | 30.0% | |
| ATGATCCTAAACTTGGTTTA+TGG | - | chr4.2:85645504-85645523 | MS.gene067273:intron | 30.0% | |
| CACTTAGAGAAGAACTAATT+AGG | - | chr4.2:85646610-85646629 | MS.gene067273:CDS | 30.0% | |
| CGGAATCAAACAATTTGAAA+AGG | + | chr4.2:85646559-85646578 | None:intergenic | 30.0% | |
| CTTCTGATGAAAAAACAACA+GGG | - | chr4.2:85647400-85647419 | MS.gene067273:intron | 30.0% | |
| GAACAGAATAATTGTTCTTG+AGG | - | chr4.2:85646098-85646117 | MS.gene067273:intron | 30.0% | |
| GAATAATTGTTCTTGAGGAT+TGG | - | chr4.2:85646103-85646122 | MS.gene067273:intron | 30.0% | |
| TCAAACAATTTGAAAAGGAG+CGG | + | chr4.2:85646554-85646573 | None:intergenic | 30.0% | |
| ! | CGTTTCTTTAAAAGCTCATT+CGG | - | chr4.2:85646577-85646596 | MS.gene067273:CDS | 30.0% |
| ! | CTAATTAGTTCTTCTCTAAG+TGG | + | chr4.2:85646612-85646631 | None:intergenic | 30.0% |
| ! | GTTTCTTTAAAAGCTCATTC+GGG | - | chr4.2:85646578-85646597 | MS.gene067273:CDS | 30.0% |
| ! | TCAATGGTAATGCATCTAAA+GGG | + | chr4.2:85645532-85645551 | None:intergenic | 30.0% |
| !! | ATTTTAGTGCTTGTTTGGAT+TGG | + | chr4.2:85647280-85647299 | None:intergenic | 30.0% |
| !! | CGAATGAGCTTTTAAAGAAA+CGG | + | chr4.2:85646579-85646598 | None:intergenic | 30.0% |
| !! | TCTGCAGGGTTTTAATAAAA+AGG | + | chr4.2:85647107-85647126 | None:intergenic | 30.0% |
| AAAGGTGAAAACAACGTAAC+TGG | + | chr4.2:85645674-85645693 | None:intergenic | 35.0% | |
| AAGAGTGAAGAATCTGAAGA+TGG | - | chr4.2:85646297-85646316 | MS.gene067273:intron | 35.0% | |
| AGACACTTAGTAATGCTAGA+TGG | + | chr4.2:85647156-85647175 | None:intergenic | 35.0% | |
| AGCATTACTAAGTGTCTGTT+TGG | - | chr4.2:85647159-85647178 | MS.gene067273:intron | 35.0% | |
| AGGTGATATTATTTGGCAAC+CGG | - | chr4.2:85646041-85646060 | MS.gene067273:intron | 35.0% | |
| ATTCAACAGCCAAAAGTTCA+TGG | + | chr4.2:85646894-85646913 | None:intergenic | 35.0% | |
| CTACTAAAAGATTGCGACTT+TGG | - | chr4.2:85645458-85645477 | MS.gene067273:intron | 35.0% | |
| GCATGAAGAACAGTTTCATT+TGG | - | chr4.2:85647666-85647685 | MS.gene067273:intron | 35.0% | |
| GCTATGTTTGCCGAAAATAT+AGG | - | chr4.2:85646213-85646232 | MS.gene067273:intron | 35.0% | |
| GCTTCTGATGAAAAAACAAC+AGG | - | chr4.2:85647399-85647418 | MS.gene067273:intron | 35.0% | |
| GGAGAACAGTTTCTAATAGT+TGG | - | chr4.2:85645479-85645498 | MS.gene067273:intron | 35.0% | |
| GTTTCAAAAGGTTCAACTGA+TGG | + | chr4.2:85646489-85646508 | None:intergenic | 35.0% | |
| GTTTCATTTGGCATCAACAA+TGG | - | chr4.2:85647678-85647697 | MS.gene067273:intron | 35.0% | |
| TAGATGCATTACCATTGACA+TGG | - | chr4.2:85645534-85645553 | MS.gene067273:intron | 35.0% | |
| TCTTCTTCAACAACTTCACT+TGG | + | chr4.2:85646450-85646469 | None:intergenic | 35.0% | |
| TGAAAATGCTCAGTTAAGCA+AGG | - | chr4.2:85647579-85647598 | MS.gene067273:intron | 35.0% | |
| TGTTCATAGTTTCCCATGTT+TGG | + | chr4.2:85646083-85646102 | None:intergenic | 35.0% | |
| TTAGTAGCTGAAACTCAACA+CGG | + | chr4.2:85645445-85645464 | None:intergenic | 35.0% | |
| TTCTGATCCTGAGTTTCAAA+AGG | + | chr4.2:85646501-85646520 | None:intergenic | 35.0% | |
| TTTAGGGATTTGAGTCCTAA+AGG | + | chr4.2:85645383-85645402 | None:intergenic | 35.0% | |
| ! | CTTAAAACTCTGGTTTCCAT+CGG | + | chr4.2:85645794-85645813 | None:intergenic | 35.0% |
| ! | GAGATGTTACCATGAACTTT+TGG | - | chr4.2:85646882-85646901 | MS.gene067273:CDS | 35.0% |
| ! | GTCAATGGTAATGCATCTAA+AGG | + | chr4.2:85645533-85645552 | None:intergenic | 35.0% |
| ! | TTCACTTGTAGGCTTTAGTT+AGG | - | chr4.2:85647424-85647443 | MS.gene067273:intron | 35.0% |
| !! | AGCTTAATCGATTTTGAAGG+AGG | - | chr4.2:85646375-85646394 | MS.gene067273:intron | 35.0% |
| !! | GGAAGCTTAATCGATTTTGA+AGG | - | chr4.2:85646372-85646391 | MS.gene067273:intron | 35.0% |
| !!! | AGTTGAACCTTTTGAAACTC+AGG | - | chr4.2:85646491-85646510 | MS.gene067273:CDS | 35.0% |
| !!! | CTCTTTTGGTCTTAAAACTC+TGG | + | chr4.2:85645804-85645823 | None:intergenic | 35.0% |
| AAAAAAGGGACGATTGTGGA+GGG | - | chr4.2:85646351-85646370 | MS.gene067273:intron | 40.0% | |
| AGTCACGATCCTTGATATTG+CGG | - | chr4.2:85646985-85647004 | MS.gene067273:CDS | 40.0% | |
| ATCATGTGTTCAGGATATGC+TGG | - | chr4.2:85645975-85645994 | MS.gene067273:intron | 40.0% | |
| ATCTTGAGGCCAAAAGAAAG+GGG | - | chr4.2:85646752-85646771 | MS.gene067273:CDS | 40.0% | |
| ATTAAGCCAGGTACAAGAAC+AGG | + | chr4.2:85646402-85646421 | None:intergenic | 40.0% | |
| CATCTTGAGGCCAAAAGAAA+GGG | - | chr4.2:85646751-85646770 | MS.gene067273:CDS | 40.0% | |
| CATGGTCTGATGGTCATATA+TGG | - | chr4.2:85645552-85645571 | MS.gene067273:intron | 40.0% | |
| CGGTGAATTTGACACAATCA+TGG | + | chr4.2:85647257-85647276 | None:intergenic | 40.0% | |
| GGATCGAGTAATCCAAACAT+GGG | - | chr4.2:85646068-85646087 | MS.gene067273:intron | 40.0% | |
| GGGTTCCATAAACCAAGTTT+AGG | + | chr4.2:85645512-85645531 | None:intergenic | 40.0% | |
| GGTGATATTATTTGGCAACC+GGG | - | chr4.2:85646042-85646061 | MS.gene067273:intron | 40.0% | |
| GTGATATTATTTGGCAACCG+GGG | - | chr4.2:85646043-85646062 | MS.gene067273:intron | 40.0% | |
| GTTGGAGATGATCCTAAACT+TGG | - | chr4.2:85645497-85645516 | MS.gene067273:intron | 40.0% | |
| TAAAAAAGGGACGATTGTGG+AGG | - | chr4.2:85646350-85646369 | MS.gene067273:intron | 40.0% | |
| TCAAACTCAGAGCCAATTCA+TGG | - | chr4.2:85647709-85647728 | MS.gene067273:CDS | 40.0% | |
| TCAACCAAATGAAGAACCTC+CGG | - | chr4.2:85646170-85646189 | MS.gene067273:intron | 40.0% | |
| TCAGGATCAGAATATACCAG+AGG | - | chr4.2:85646509-85646528 | MS.gene067273:CDS | 40.0% | |
| TCCAAAATGTTCTCGAAACC+TGG | - | chr4.2:85645707-85645726 | MS.gene067273:intron | 40.0% | |
| TCTTCTGCATGTCTTCCTTT+AGG | - | chr4.2:85645365-85645384 | MS.gene067273:CDS | 40.0% | |
| TGCCGAAAATATAGGTTCCT+CGG | - | chr4.2:85646221-85646240 | MS.gene067273:intron | 40.0% | |
| TGGCATCAACAATGGAAGAA+GGG | - | chr4.2:85647686-85647705 | MS.gene067273:CDS | 40.0% | |
| TGTTGAAGAAGAAAAGACCG+TGG | - | chr4.2:85646458-85646477 | MS.gene067273:intron | 40.0% | |
| TTACCATTGACATGGTCTGA+TGG | - | chr4.2:85645542-85645561 | MS.gene067273:intron | 40.0% | |
| TTGGCATCAACAATGGAAGA+AGG | - | chr4.2:85647685-85647704 | MS.gene067273:CDS | 40.0% | |
| ! | AGTTTTTGTAACAGGTCTGC+AGG | + | chr4.2:85647122-85647141 | None:intergenic | 40.0% |
| ! | CGGTGAAAACAACACTCTTT+TGG | + | chr4.2:85645818-85645837 | None:intergenic | 40.0% |
| ! | CTCCGAGGAACCTATATTTT+CGG | + | chr4.2:85646226-85646245 | None:intergenic | 40.0% |
| ! | GCAATGTTTCCCCTTTCTTT+TGG | + | chr4.2:85646764-85646783 | None:intergenic | 40.0% |
| ! | GTTTTTGTAACAGGTCTGCA+GGG | + | chr4.2:85647121-85647140 | None:intergenic | 40.0% |
| ! | TCATATATGGACTGTTGAGC+TGG | - | chr4.2:85645565-85645584 | MS.gene067273:intron | 40.0% |
| ! | TGCGATTTTCCGCAATATCA+AGG | + | chr4.2:85646997-85647016 | None:intergenic | 40.0% |
| ! | TGTTCGCTTTGTTGAACTTG+AGG | + | chr4.2:85645309-85645328 | None:intergenic | 40.0% |
| ! | TTAGTGCTTGTTTGGATTGG+CGG | + | chr4.2:85647277-85647296 | None:intergenic | 40.0% |
| ! | TTTTCGGCAAACATAGCCAT+TGG | + | chr4.2:85646210-85646229 | None:intergenic | 40.0% |
| AAATGTTCTCGAAACCTGGC+TGG | - | chr4.2:85645711-85645730 | MS.gene067273:intron | 45.0% | |
| AACAACAGGGCTTCACTTGT+AGG | - | chr4.2:85647413-85647432 | MS.gene067273:intron | 45.0% | |
| AGAACCGGAGGTTCTTCATT+TGG | + | chr4.2:85646177-85646196 | None:intergenic | 45.0% | |
| AGTCTTTGCAACCACAACTG+AGG | + | chr4.2:85647044-85647063 | None:intergenic | 45.0% | |
| CCAGCTTCTTCTTCAGTCAA+CGG | + | chr4.2:85646426-85646445 | None:intergenic | 45.0% | |
| CGAAAATATAGGTTCCTCGG+AGG | - | chr4.2:85646224-85646243 | MS.gene067273:intron | 45.0% | |
| CGGATCGAGTAATCCAAACA+TGG | - | chr4.2:85646067-85646086 | MS.gene067273:intron | 45.0% | |
| GAAAGCAGACCGTTATGTAG+TGG | - | chr4.2:85645937-85645956 | MS.gene067273:intron | 45.0% | |
| GCATCTTGAGGCCAAAAGAA+AGG | - | chr4.2:85646750-85646769 | MS.gene067273:CDS | 45.0% | |
| TATTATTTGGCAACCGGGGT+CGG | - | chr4.2:85646047-85646066 | MS.gene067273:intron | 45.0% | |
| TCAGTCAACGGTATTAAGCC+AGG | + | chr4.2:85646414-85646433 | None:intergenic | 45.0% | |
| TGACCATCAGACCATGTCAA+TGG | + | chr4.2:85645548-85645567 | None:intergenic | 45.0% | |
| TGATGTTGCAACCCAGATCA+CGG | - | chr4.2:85647074-85647093 | MS.gene067273:intron | 45.0% | |
| ! | AACAAGGTGATGATGAGCGT+TGG | + | chr4.2:85646711-85646730 | None:intergenic | 45.0% |
| ! | AACTCTGGTTTCCATCGGAA+AGG | + | chr4.2:85645789-85645808 | None:intergenic | 45.0% |
| ! | ACTCTGGTTTCCATCGGAAA+GGG | + | chr4.2:85645788-85645807 | None:intergenic | 45.0% |
| ! | ATGGCGACTCATGGTGATTT+TGG | + | chr4.2:85647238-85647257 | None:intergenic | 45.0% |
| ! | ATTGGCTTCTCTGGTAGAAC+CGG | + | chr4.2:85646192-85646211 | None:intergenic | 45.0% |
| ! | GCCAGGTTTCGAGAACATTT+TGG | + | chr4.2:85645711-85645730 | None:intergenic | 45.0% |
| ! | GCTGGCAATGTTCTAAGTCA+TGG | - | chr4.2:85646958-85646977 | MS.gene067273:CDS | 45.0% |
| ! | TGTCTGTTTGGAACCAATCG+CGG | - | chr4.2:85647171-85647190 | MS.gene067273:intron | 45.0% |
| ! | TTCAACTGATGGCTCTACCA+CGG | + | chr4.2:85646478-85646497 | None:intergenic | 45.0% |
| !! | AACATAGCCATTGGCTTCTC+TGG | + | chr4.2:85646201-85646220 | None:intergenic | 45.0% |
| ACTCATCAAGCGGTTACCTC+TGG | + | chr4.2:85646528-85646547 | None:intergenic | 50.0% | |
| ACTTTCTGTGAGATCCTCCG+AGG | + | chr4.2:85646241-85646260 | None:intergenic | 50.0% | |
| ATTACCAGAGCCCTTTCCGA+TGG | - | chr4.2:85645775-85645794 | MS.gene067273:intron | 50.0% | |
| CGGAAAATCGCAGTCAAGTG+TGG | - | chr4.2:85647005-85647024 | MS.gene067273:CDS | 50.0% | |
| CTGGTAATCCAGAGTTCGGT+CGG | + | chr4.2:85645763-85645782 | None:intergenic | 50.0% | |
| GACACAATCATGGCGACTCA+TGG | + | chr4.2:85647247-85647266 | None:intergenic | 50.0% | |
| GATGCATGCAACCTCAGTTG+TGG | - | chr4.2:85647030-85647049 | MS.gene067273:intron | 50.0% | |
| GGTTCTACCAGAGAAGCCAA+TGG | - | chr4.2:85646191-85646210 | MS.gene067273:intron | 50.0% | |
| TGGTAATCCAGAGTTCGGTC+GGG | + | chr4.2:85645762-85645781 | None:intergenic | 50.0% | |
| TGTGTTCAGGATATGCTGGC+TGG | - | chr4.2:85645979-85645998 | MS.gene067273:intron | 50.0% | |
| ! | CCGTTGACTGAAGAAGAAGC+TGG | - | chr4.2:85646423-85646442 | MS.gene067273:intron | 50.0% |
| ! | GGCTCTGGTAATCCAGAGTT+CGG | + | chr4.2:85645767-85645786 | None:intergenic | 50.0% |
| AAAGGTTTGCGGCCGTGATC+TGG | + | chr4.2:85647089-85647108 | None:intergenic | 55.0% | |
| AAGGTTTGCGGCCGTGATCT+GGG | + | chr4.2:85647088-85647107 | None:intergenic | 55.0% | |
| GGAGGTCCTGTTCTTGTACC+TGG | - | chr4.2:85646393-85646412 | MS.gene067273:intron | 55.0% | |
| GTTTCCATCGGAAAGGGCTC+TGG | + | chr4.2:85645782-85645801 | None:intergenic | 55.0% | |
| TAATCCAGAGTTCGGTCGGG+AGG | + | chr4.2:85645759-85645778 | None:intergenic | 55.0% | |
| TGGATTACTCGATCCGACCC+CGG | + | chr4.2:85646063-85646082 | None:intergenic | 55.0% | |
| ! | CTGTTTGGAACCAATCGCGG+TGG | - | chr4.2:85647174-85647193 | MS.gene067273:intron | 55.0% |
| AACCTGGCTGGAGCAGTCCT+TGG | - | chr4.2:85645723-85645742 | MS.gene067273:intron | 60.0% | |
| AATCACAGCGCCACCGCGAT+TGG | + | chr4.2:85647187-85647206 | None:intergenic | 60.0% | |
| GGAGCGGCACACTCATCAAG+CGG | + | chr4.2:85646538-85646557 | None:intergenic | 60.0% | |
| GGCTTCTCTGGTAGAACCGG+AGG | + | chr4.2:85646189-85646208 | None:intergenic | 60.0% | |
| TTCACCTCCCGACCGAACTC+TGG | - | chr4.2:85645752-85645771 | MS.gene067273:intron | 60.0% | |
| TTCGGTCGGGAGGTGAAGTC+TGG | + | chr4.2:85645749-85645768 | None:intergenic | 60.0% | |
| CGGGAGGTGAAGTCTGGCCA+AGG | + | chr4.2:85645743-85645762 | None:intergenic | 65.0% | |
| GGCCAAGGACTGCTCCAGCC+AGG | + | chr4.2:85645728-85645747 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 85645285 | 85647730 | 85645285 | ID=MS.gene067273 |
| chr4.2 | mRNA | 85645285 | 85647730 | 85645285 | ID=MS.gene067273.t1;Parent=MS.gene067273 |
| chr4.2 | exon | 85647682 | 85647730 | 85647682 | ID=MS.gene067273.t1.exon1;Parent=MS.gene067273.t1 |
| chr4.2 | CDS | 85647682 | 85647730 | 85647682 | ID=cds.MS.gene067273.t1;Parent=MS.gene067273.t1 |
| chr4.2 | exon | 85647429 | 85647589 | 85647429 | ID=MS.gene067273.t1.exon2;Parent=MS.gene067273.t1 |
| chr4.2 | CDS | 85647429 | 85647589 | 85647429 | ID=cds.MS.gene067273.t1;Parent=MS.gene067273.t1 |
| chr4.2 | exon | 85646485 | 85647027 | 85646485 | ID=MS.gene067273.t1.exon3;Parent=MS.gene067273.t1 |
| chr4.2 | CDS | 85646485 | 85647027 | 85646485 | ID=cds.MS.gene067273.t1;Parent=MS.gene067273.t1 |
| chr4.2 | exon | 85645285 | 85645423 | 85645285 | ID=MS.gene067273.t1.exon4;Parent=MS.gene067273.t1 |
| chr4.2 | CDS | 85645285 | 85645423 | 85645285 | ID=cds.MS.gene067273.t1;Parent=MS.gene067273.t1 |
| Gene Sequence |
| Protein sequence |
