Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069289.t1 | XP_013458949.1 | 86.8 | 524 | 69 | 0 | 177 | 700 | 140 | 663 | 1.10E-203 | 719.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069289.t1 | P37707 | 33.8 | 136 | 81 | 3 | 347 | 475 | 74 | 207 | 1.7e-11 | 72.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069289.t1 | A0A072UUG0 | 86.8 | 524 | 69 | 0 | 177 | 700 | 140 | 663 | 8.1e-204 | 719.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04918 | MS.gene069289 | 0.814857 | 1.24E-51 | -1.69E-46 |
| MS.gene04920 | MS.gene069289 | 0.809444 | 1.89E-50 | -1.69E-46 |
| MS.gene049254 | MS.gene069289 | 0.809653 | 1.70E-50 | -1.69E-46 |
| MS.gene049711 | MS.gene069289 | 0.805103 | 1.57E-49 | -1.69E-46 |
| MS.gene049983 | MS.gene069289 | 0.814988 | 1.16E-51 | -1.69E-46 |
| MS.gene051019 | MS.gene069289 | 0.828973 | 6.67E-55 | -1.69E-46 |
| MS.gene051699 | MS.gene069289 | 0.806748 | 7.08E-50 | -1.69E-46 |
| MS.gene051744 | MS.gene069289 | 0.807336 | 5.31E-50 | -1.69E-46 |
| MS.gene053272 | MS.gene069289 | -0.873561 | 1.34E-67 | -1.69E-46 |
| MS.gene053418 | MS.gene069289 | 0.800662 | 1.30E-48 | -1.69E-46 |
| MS.gene054142 | MS.gene069289 | 0.811685 | 6.19E-51 | -1.69E-46 |
| MS.gene055801 | MS.gene069289 | 0.805863 | 1.09E-49 | -1.69E-46 |
| MS.gene056363 | MS.gene069289 | 0.818027 | 2.43E-52 | -1.69E-46 |
| MS.gene056699 | MS.gene069289 | 0.820539 | 6.50E-53 | -1.69E-46 |
| MS.gene05686 | MS.gene069289 | 0.843683 | 1.21E-58 | -1.69E-46 |
| MS.gene057102 | MS.gene069289 | 0.836113 | 1.13E-56 | -1.69E-46 |
| MS.gene057208 | MS.gene069289 | 0.815295 | 9.95E-52 | -1.69E-46 |
| MS.gene058159 | MS.gene069289 | 0.803896 | 2.80E-49 | -1.69E-46 |
| MS.gene058355 | MS.gene069289 | 0.804317 | 2.29E-49 | -1.69E-46 |
| MS.gene058781 | MS.gene069289 | 0.828287 | 9.78E-55 | -1.69E-46 |
| MS.gene058783 | MS.gene069289 | 0.828181 | 1.04E-54 | -1.69E-46 |
| MS.gene05952 | MS.gene069289 | 0.81593 | 7.18E-52 | -1.69E-46 |
| MS.gene05985 | MS.gene069289 | -0.84635 | 2.30E-59 | -1.69E-46 |
| MS.gene060522 | MS.gene069289 | 0.847549 | 1.08E-59 | -1.69E-46 |
| MS.gene060777 | MS.gene069289 | 0.811964 | 5.38E-51 | -1.69E-46 |
| MS.gene060935 | MS.gene069289 | 0.84436 | 7.93E-59 | -1.69E-46 |
| MS.gene060937 | MS.gene069289 | 0.84404 | 9.67E-59 | -1.69E-46 |
| MS.gene061100 | MS.gene069289 | 0.828912 | 6.91E-55 | -1.69E-46 |
| MS.gene061160 | MS.gene069289 | 0.813816 | 2.11E-51 | -1.69E-46 |
| MS.gene061188 | MS.gene069289 | 0.815695 | 8.10E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069289.t1 | MTR_3g012500 | 88.444 | 675 | 65 | 3 | 27 | 700 | 1 | 663 | 0.0 | 1187 |
| MS.gene069289.t1 | MTR_3g012490 | 47.248 | 654 | 229 | 20 | 142 | 700 | 1 | 633 | 3.03e-154 | 461 |
| MS.gene069289.t1 | MTR_3g098590 | 56.589 | 129 | 56 | 0 | 345 | 473 | 16 | 144 | 1.27e-46 | 173 |
| MS.gene069289.t1 | MTR_4g084080 | 44.000 | 125 | 67 | 1 | 349 | 470 | 19 | 143 | 1.82e-26 | 116 |
| MS.gene069289.t1 | MTR_2g067150 | 39.200 | 125 | 73 | 1 | 349 | 470 | 161 | 285 | 1.15e-19 | 94.0 |
| MS.gene069289.t1 | MTR_2g066940 | 39.200 | 125 | 73 | 1 | 349 | 470 | 123 | 247 | 1.41e-19 | 93.6 |
| MS.gene069289.t1 | MTR_7g070320 | 31.429 | 175 | 111 | 2 | 314 | 482 | 3 | 174 | 1.26e-18 | 90.9 |
| MS.gene069289.t1 | MTR_1g018690 | 30.899 | 178 | 113 | 3 | 313 | 483 | 4 | 178 | 2.71e-17 | 83.6 |
| MS.gene069289.t1 | MTR_4g013760 | 33.333 | 132 | 81 | 1 | 346 | 470 | 36 | 167 | 3.03e-16 | 80.5 |
| MS.gene069289.t1 | MTR_8g099685 | 34.074 | 135 | 80 | 3 | 343 | 470 | 175 | 307 | 3.29e-15 | 77.8 |
| MS.gene069289.t1 | MTR_8g099685 | 35.156 | 128 | 74 | 3 | 343 | 463 | 175 | 300 | 1.19e-14 | 75.9 |
| MS.gene069289.t1 | MTR_3g081090 | 33.333 | 135 | 81 | 3 | 343 | 470 | 184 | 316 | 2.05e-14 | 75.5 |
| MS.gene069289.t1 | MTR_7g029130 | 33.571 | 140 | 84 | 3 | 343 | 475 | 163 | 300 | 2.25e-14 | 75.1 |
| MS.gene069289.t1 | MTR_3g081090 | 34.375 | 128 | 75 | 3 | 343 | 463 | 184 | 309 | 4.13e-14 | 74.3 |
| MS.gene069289.t1 | MTR_7g070350 | 30.827 | 133 | 86 | 1 | 345 | 471 | 25 | 157 | 7.93e-14 | 73.9 |
| MS.gene069289.t1 | MTR_3g081090 | 35.955 | 89 | 50 | 1 | 343 | 424 | 184 | 272 | 3.22e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069289.t1 | AT2G32910 | 53.097 | 226 | 99 | 3 | 328 | 547 | 300 | 524 | 5.04e-60 | 214 |
| MS.gene069289.t1 | AT5G61910 | 56.693 | 127 | 54 | 1 | 345 | 471 | 59 | 184 | 9.24e-40 | 157 |
| MS.gene069289.t1 | AT5G61910 | 56.693 | 127 | 54 | 1 | 345 | 471 | 59 | 184 | 9.24e-40 | 157 |
| MS.gene069289.t1 | AT5G61910 | 56.693 | 127 | 54 | 1 | 345 | 471 | 63 | 188 | 9.45e-40 | 157 |
| MS.gene069289.t1 | AT5G61910 | 56.693 | 127 | 54 | 1 | 345 | 471 | 59 | 184 | 1.14e-39 | 156 |
| MS.gene069289.t1 | AT5G61910 | 56.693 | 127 | 54 | 1 | 345 | 471 | 59 | 184 | 8.26e-38 | 152 |
| MS.gene069289.t1 | AT2G35140 | 39.200 | 125 | 73 | 1 | 349 | 470 | 23 | 147 | 2.17e-20 | 97.1 |
| MS.gene069289.t1 | AT2G35140 | 39.200 | 125 | 73 | 1 | 349 | 470 | 23 | 147 | 2.17e-20 | 97.1 |
| MS.gene069289.t1 | AT2G35140 | 39.200 | 125 | 73 | 1 | 349 | 470 | 23 | 147 | 2.17e-20 | 97.1 |
| MS.gene069289.t1 | AT2G35140 | 39.200 | 125 | 73 | 1 | 349 | 470 | 23 | 147 | 2.17e-20 | 97.1 |
| MS.gene069289.t1 | AT2G35140 | 39.200 | 125 | 73 | 1 | 349 | 470 | 23 | 147 | 2.17e-20 | 97.1 |
| MS.gene069289.t1 | AT2G35140 | 39.200 | 125 | 73 | 1 | 349 | 470 | 49 | 173 | 2.57e-20 | 96.7 |
| MS.gene069289.t1 | AT3G11000 | 34.091 | 132 | 81 | 1 | 347 | 472 | 11 | 142 | 3.92e-18 | 88.6 |
| MS.gene069289.t1 | AT3G11000 | 34.532 | 139 | 84 | 2 | 340 | 472 | 124 | 261 | 5.38e-17 | 85.5 |
| MS.gene069289.t1 | AT5G01660 | 34.351 | 131 | 80 | 1 | 346 | 470 | 17 | 147 | 1.71e-16 | 83.6 |
| MS.gene069289.t1 | AT5G01660 | 34.351 | 131 | 80 | 1 | 346 | 470 | 17 | 147 | 3.73e-16 | 82.8 |
| MS.gene069289.t1 | AT5G01660 | 34.351 | 131 | 80 | 1 | 346 | 470 | 17 | 147 | 3.73e-16 | 82.8 |
| MS.gene069289.t1 | AT5G42050 | 36.296 | 135 | 77 | 3 | 343 | 470 | 212 | 344 | 5.55e-16 | 80.5 |
| MS.gene069289.t1 | AT3G27090 | 31.429 | 140 | 87 | 3 | 343 | 475 | 158 | 295 | 3.14e-12 | 68.6 |
| MS.gene069289.t1 | AT3G27090 | 31.429 | 140 | 87 | 3 | 343 | 475 | 158 | 295 | 3.14e-12 | 68.6 |
| MS.gene069289.t1 | AT3G27090 | 31.429 | 140 | 87 | 3 | 343 | 475 | 158 | 295 | 3.14e-12 | 68.6 |
Find 155 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCACGGTCATTCAAATAAA+TGG | 0.124768 | 3.3:+8248047 | None:intergenic |
| CTTTCTTGAATTATTGCTTT+TGG | 0.198180 | 3.3:+8248336 | None:intergenic |
| CTTCTCATGTTAATCCTATA+AGG | 0.213380 | 3.3:-8248161 | MS.gene069289:CDS |
| CTCTCATAAGGTTCCCTTAT+AGG | 0.216544 | 3.3:+8248147 | None:intergenic |
| GTTTACAAGGCTTCATCTTC+TGG | 0.233330 | 3.3:-8248762 | MS.gene069289:CDS |
| TCCCCGTGATTCATTTCTTT+TGG | 0.241748 | 3.3:-8248226 | MS.gene069289:CDS |
| CGTCCTTAGTTTCATTCTGC+TGG | 0.267103 | 3.3:+8249207 | None:intergenic |
| GGGTGTTTCATCTGCTAAAA+AGG | 0.271160 | 3.3:-8248856 | MS.gene069289:CDS |
| GAAGCACAAGGAGTCAAATA+AGG | 0.272385 | 3.3:-8249021 | MS.gene069289:CDS |
| AAGCTTGAACCCCGAGCTTT+TGG | 0.280064 | 3.3:-8248732 | MS.gene069289:CDS |
| CATCGCTCCCAGCTCGTATT+TGG | 0.301431 | 3.3:-8247917 | MS.gene069289:CDS |
| GGGAGGCTCCGGGTCGGGTC+AGG | 0.305230 | 3.3:-8248314 | MS.gene069289:CDS |
| CCCGATATGGCTGCACTTGA+TGG | 0.310834 | 3.3:+8247791 | None:intergenic |
| TGATCGATGTTATGAGGATT+AGG | 0.312915 | 3.3:+8249590 | None:intergenic |
| CTCCCAGCTCGTATTTGGTT+GGG | 0.320824 | 3.3:-8247912 | MS.gene069289:CDS |
| GCGATGGCCTCTCTACTTAA+AGG | 0.323048 | 3.3:+8247934 | None:intergenic |
| TTCTTCTTGGCCTTAAGTTT+AGG | 0.327881 | 3.3:+8249341 | None:intergenic |
| TTAGGATTAGAAGAAAATTC+AGG | 0.330730 | 3.3:+8249608 | None:intergenic |
| TTAGGATTAGAAGAAAATTC+AGG | 0.331140 | 3.3:+8249497 | None:intergenic |
| TTTGATCTGAAGCTGCTATA+TGG | 0.333261 | 3.3:-8248786 | MS.gene069289:CDS |
| GAGGCTCCGGGTCGGGTCAG+GGG | 0.355764 | 3.3:-8248312 | MS.gene069289:CDS |
| AGGAGTCAAATAAGGGTTCT+AGG | 0.356624 | 3.3:-8249013 | MS.gene069289:CDS |
| ATTGGAGACTGAGCATAATA+TGG | 0.358878 | 3.3:-8249900 | MS.gene069289:CDS |
| TCCAACTTGTCTCCCCGATA+TGG | 0.359947 | 3.3:+8247778 | None:intergenic |
| CCATCAAGTGCAGCCATATC+GGG | 0.373653 | 3.3:-8247791 | MS.gene069289:CDS |
| AGGCATAACGATCATCTATA+TGG | 0.375161 | 3.3:+8247995 | None:intergenic |
| TTCATCTAGGGATGCATACT+TGG | 0.377709 | 3.3:-8247959 | MS.gene069289:CDS |
| ACCATCAAGTGCAGCCATAT+CGG | 0.380439 | 3.3:-8247792 | MS.gene069289:CDS |
| TTGAAAATGCTTTCCGGTAG+CGG | 0.386260 | 3.3:+8248574 | None:intergenic |
| GATCGTTATGCCTATCGATA+TGG | 0.392738 | 3.3:-8247985 | MS.gene069289:CDS |
| TCTTCTTGATCGATGTTATG+AGG | 0.392953 | 3.3:+8249584 | None:intergenic |
| ATCTCTGGTTCCTAAACTTA+AGG | 0.404846 | 3.3:-8249351 | MS.gene069289:CDS |
| GGCTGCACTTGATGGTAATC+AGG | 0.406996 | 3.3:+8247799 | None:intergenic |
| TTCTGATTCTTTCCCGCTAC+CGG | 0.412679 | 3.3:-8248587 | MS.gene069289:CDS |
| TGATCAAGAAGAGAGCAAAT+TGG | 0.415472 | 3.3:-8249918 | MS.gene069289:CDS |
| AGAAAGGGAGGCTCCGGGTC+GGG | 0.416722 | 3.3:-8248319 | MS.gene069289:CDS |
| ATTATTCTCAGTGCCAATCT+TGG | 0.418563 | 3.3:+8249865 | None:intergenic |
| CGTAGACTTTCAACATGAAC+GGG | 0.420201 | 3.3:+8248078 | None:intergenic |
| CGGGTCGGGTCAGGGGATCA+TGG | 0.421777 | 3.3:-8248305 | MS.gene069289:CDS |
| TCTGGTTTACCAGATCCTTC+AGG | 0.429526 | 3.3:+8249428 | None:intergenic |
| TCCCAGCTCGTATTTGGTTG+GGG | 0.430175 | 3.3:-8247911 | MS.gene069289:CDS |
| ATCGATATGGTGCTTCATCT+AGG | 0.431246 | 3.3:-8247972 | MS.gene069289:CDS |
| TTCTCATGTTAATCCTATAA+GGG | 0.432079 | 3.3:-8248160 | MS.gene069289:CDS |
| CACTGAGAATAATGTGGATC+AGG | 0.437810 | 3.3:-8249855 | MS.gene069289:CDS |
| AATTCAAGAAAGGGAGGCTC+CGG | 0.439056 | 3.3:-8248325 | MS.gene069289:CDS |
| GGAGGCTCCGGGTCGGGTCA+GGG | 0.441116 | 3.3:-8248313 | MS.gene069289:CDS |
| GTCCTTAGTTTCATTCTGCT+GGG | 0.445967 | 3.3:+8249208 | None:intergenic |
| GCTCCCAGCTCGTATTTGGT+TGG | 0.447102 | 3.3:-8247913 | MS.gene069289:CDS |
| TCATCTCGTTACTCTTTCGC+TGG | 0.447405 | 3.3:-8247736 | MS.gene069289:CDS |
| GGAGAGAGATCGTTGAAGAT+AGG | 0.455533 | 3.3:-8247855 | MS.gene069289:CDS |
| TGAAAATGCTTTCCGGTAGC+GGG | 0.460509 | 3.3:+8248575 | None:intergenic |
| CAAAAGCAATAATTCAAGAA+AGG | 0.463144 | 3.3:-8248335 | MS.gene069289:CDS |
| TGTTCATAATCTCTCTCATA+AGG | 0.464732 | 3.3:+8248135 | None:intergenic |
| AAGTGAAGGTAAGTCAGAAT+AGG | 0.466413 | 3.3:-8249145 | MS.gene069289:CDS |
| GTATCTGCATAGTATGGATC+AGG | 0.468899 | 3.3:-8249972 | None:intergenic |
| AAACTTGCCACCAAAAGCTC+GGG | 0.468932 | 3.3:+8248722 | None:intergenic |
| TGGTGGCAAGTTTCCTGCCC+AGG | 0.469476 | 3.3:-8248712 | MS.gene069289:intron |
| GCCATATCGGGGAGACAAGT+TGG | 0.470207 | 3.3:-8247779 | MS.gene069289:CDS |
| TTGTTTCCGCTATCGTGTCA+TGG | 0.475889 | 3.3:-8248877 | MS.gene069289:CDS |
| ACACGATAGCGGAAACAATC+AGG | 0.480874 | 3.3:+8248882 | None:intergenic |
| GTTATGCTCAGTGGCCACTC+TGG | 0.482592 | 3.3:+8249787 | None:intergenic |
| CATGAACGGGAACATTGCTT+TGG | 0.482998 | 3.3:+8248091 | None:intergenic |
| AAAAGCAATAATTCAAGAAA+GGG | 0.484665 | 3.3:-8248334 | MS.gene069289:CDS |
| TTGTGAAGAAGAAAATAAAG+AGG | 0.484699 | 3.3:-8249301 | MS.gene069289:CDS |
| ACTCTTCCTCCTGAAGGATC+TGG | 0.486295 | 3.3:-8249437 | MS.gene069289:CDS |
| ATGTTATCAGTCCCGGCAAA+AGG | 0.487183 | 3.3:+8247883 | None:intergenic |
| TCACGGTCATTCAAATAAAT+GGG | 0.488961 | 3.3:+8248048 | None:intergenic |
| GATCAAGAAGAGGCCAAGAT+TGG | 0.492951 | 3.3:-8249878 | MS.gene069289:CDS |
| GAGTATAGCTCTGCTGTTCA+CGG | 0.493062 | 3.3:+8248031 | None:intergenic |
| AGAGAGAGAGTAACCTGGGC+AGG | 0.493996 | 3.3:+8248699 | None:intergenic |
| CTTTGGTAGCGAGGTTCCAC+AGG | 0.497366 | 3.3:+8248108 | None:intergenic |
| CTCCAAAAGAAATGAATCAC+GGG | 0.498615 | 3.3:+8248224 | None:intergenic |
| GATGTTCTACGGATCAAGCC+TGG | 0.501388 | 3.3:-8248831 | MS.gene069289:CDS |
| TTGCACATGGAAAGAGCTGT+TGG | 0.501730 | 3.3:-8248276 | MS.gene069289:CDS |
| ACTGCTGAATGAGCTCCAAC+TGG | 0.502972 | 3.3:+8248381 | None:intergenic |
| AAGCACAAGGAGTCAAATAA+GGG | 0.505342 | 3.3:-8249020 | MS.gene069289:CDS |
| CCTTCGCATGTTATCAGTCC+CGG | 0.507344 | 3.3:+8247876 | None:intergenic |
| CTTAAGGCCAAGAAGAAGAA+TGG | 0.510846 | 3.3:-8249335 | MS.gene069289:CDS |
| GAAACTTGCCACCAAAAGCT+CGG | 0.512639 | 3.3:+8248721 | None:intergenic |
| TAACGATCATCTATATGGTC+AGG | 0.513759 | 3.3:+8248000 | None:intergenic |
| TCCTATGGAGAAGAGTCATC+AGG | 0.514660 | 3.3:-8249105 | MS.gene069289:CDS |
| CAGTAATGACAAAAGTCCTA+TGG | 0.516763 | 3.3:-8249120 | MS.gene069289:CDS |
| GAAAGCTCTCACAATGCAGA+TGG | 0.517581 | 3.3:-8249251 | MS.gene069289:CDS |
| GATCAAGAAGAGAGCAAGAT+GGG | 0.525831 | 3.3:-8249533 | MS.gene069289:CDS |
| GATCAAGAAGAGAGCAAGAT+GGG | 0.525831 | 3.3:-8249644 | MS.gene069289:CDS |
| CATGATCCCCTGACCCGACC+CGG | 0.531496 | 3.3:+8248306 | None:intergenic |
| TACAAGGCTTCATCTTCTGG+TGG | 0.535343 | 3.3:-8248759 | MS.gene069289:CDS |
| AGATAAGGAGATCAATCTGT+TGG | 0.536087 | 3.3:-8249075 | MS.gene069289:CDS |
| GATCAGGAAGAGAGCAAGAT+GGG | 0.539414 | 3.3:-8249956 | MS.gene069289:CDS |
| ACTTGTGCAACAGTAAGTTC+TGG | 0.541360 | 3.3:+8248508 | None:intergenic |
| AACTAAGGACGAACCACCTA+AGG | 0.542788 | 3.3:-8249195 | MS.gene069289:CDS |
| ACTTGAATCAAGAAGAGAGC+AGG | 0.543234 | 3.3:-8249727 | MS.gene069289:CDS |
| TGTTTCCGCTATCGTGTCAT+GGG | 0.543621 | 3.3:-8248876 | MS.gene069289:CDS |
| TCGATATGGTGCTTCATCTA+GGG | 0.543884 | 3.3:-8247971 | MS.gene069289:CDS |
| GCTGCTATATGGAGTTTACA+AGG | 0.546827 | 3.3:-8248775 | MS.gene069289:CDS |
| TACCCAGCAGAATGAAACTA+AGG | 0.548279 | 3.3:-8249210 | MS.gene069289:CDS |
| GTAACCTTCTCACTCAACTC+TGG | 0.553426 | 3.3:+8249410 | None:intergenic |
| CAAATACGAGCTGGGAGCGA+TGG | 0.559692 | 3.3:+8247918 | None:intergenic |
| TCGTAGACTTTCAACATGAA+CGG | 0.562675 | 3.3:+8248077 | None:intergenic |
| GTTATGCTCAGTGACCATCT+TGG | 0.566913 | 3.3:+8249826 | None:intergenic |
| GGTTACTCCACAATCATTGA+AGG | 0.568854 | 3.3:-8249393 | MS.gene069289:CDS |
| GGAACATTGCTTTGGTAGCG+AGG | 0.570176 | 3.3:+8248099 | None:intergenic |
| AAGGATACTCTTCCTCCTGA+AGG | 0.571124 | 3.3:-8249443 | MS.gene069289:CDS |
| TTGATCCATGTTATGCTCAG+TGG | 0.571369 | 3.3:+8249778 | None:intergenic |
| ATTCAAGAAAGGGAGGCTCC+GGG | 0.581550 | 3.3:-8248324 | MS.gene069289:CDS |
| CTTGGCTCCTTTAAGTAGAG+AGG | 0.581675 | 3.3:-8247941 | MS.gene069289:CDS |
| AGTCAGCGACGAGAATATGA+AGG | 0.582476 | 3.3:+8247712 | None:intergenic |
| AAGAAAGGGAGGCTCCGGGT+CGG | 0.582964 | 3.3:-8248320 | MS.gene069289:CDS |
| AAAGCTCTCACAATGCAGAT+GGG | 0.585921 | 3.3:-8249250 | MS.gene069289:CDS |
| TCCTGATGACTCTTCTCCAT+AGG | 0.586477 | 3.3:+8249104 | None:intergenic |
| ACATCGATCAAGAAGAGAGT+AGG | 0.587941 | 3.3:-8249577 | MS.gene069289:CDS |
| ACATCGATCAAGAAGAGAGT+AGG | 0.587941 | 3.3:-8249688 | MS.gene069289:CDS |
| AGAAAATGATGACAACAAGA+AGG | 0.588292 | 3.3:-8249462 | MS.gene069289:CDS |
| TCTCCAAAAGAAATGAATCA+CGG | 0.589282 | 3.3:+8248223 | None:intergenic |
| AGCAATAATTCAAGAAAGGG+AGG | 0.591340 | 3.3:-8248331 | MS.gene069289:CDS |
| AGATGAAGCACCATATCGAT+AGG | 0.598566 | 3.3:+8247975 | None:intergenic |
| TGATCAAGAAGAGAGCAAGA+TGG | 0.599172 | 3.3:-8249534 | MS.gene069289:CDS |
| TGATCAAGAAGAGAGCAAGA+TGG | 0.599172 | 3.3:-8249645 | MS.gene069289:CDS |
| AGTGGCCACTGAGCATAACA+TGG | 0.601846 | 3.3:-8249783 | MS.gene069289:CDS |
| CGATCAAGAAGAGAGTAGGA+TGG | 0.603442 | 3.3:-8249573 | MS.gene069289:CDS |
| ATTATCGAGCTTATGATCGA+AGG | 0.604784 | 3.3:-8248197 | MS.gene069289:CDS |
| CCCAGCTCGTATTTGGTTGG+GGG | 0.605181 | 3.3:-8247910 | MS.gene069289:CDS |
| TAAAGAAAGAGCTTAAGTCC+AGG | 0.606025 | 3.3:+8248813 | None:intergenic |
| GATCAAGAAGAGAACAAGAT+GGG | 0.607363 | 3.3:-8249761 | MS.gene069289:CDS |
| GATGGTCACTGAGCATAACA+TGG | 0.612089 | 3.3:-8249822 | MS.gene069289:CDS |
| AGCTTATGATCGAAGGAATG+TGG | 0.612129 | 3.3:-8248190 | MS.gene069289:CDS |
| GGCGGAAAACAATGAAGTGA+AGG | 0.613148 | 3.3:-8249159 | MS.gene069289:CDS |
| GGATCAAGAAGAGAACAAGA+TGG | 0.613905 | 3.3:-8249762 | MS.gene069289:CDS |
| CGATCAAGAAGAGAGTAGGA+TGG | 0.615486 | 3.3:-8249684 | MS.gene069289:CDS |
| TAACGAGATGAAACTCGTAA+AGG | 0.618460 | 3.3:+8247748 | None:intergenic |
| GGTAGCGAGGTTCCACAGGA+CGG | 0.619158 | 3.3:+8248112 | None:intergenic |
| GGATCAGGAAGAGAGCAAGA+TGG | 0.619647 | 3.3:-8249957 | MS.gene069289:CDS |
| CTGAATGAGCTCCAACTGGT+CGG | 0.623621 | 3.3:+8248385 | None:intergenic |
| TTTCTTCTTCACAATCTTGG+GGG | 0.624109 | 3.3:+8249310 | None:intergenic |
| TAAACCAGAGTTGAGTGAGA+AGG | 0.630738 | 3.3:-8249414 | MS.gene069289:CDS |
| TCATGTTGAAAGTCTACGAA+GGG | 0.632649 | 3.3:-8248073 | MS.gene069289:CDS |
| CATCAAGTGCAGCCATATCG+GGG | 0.640837 | 3.3:-8247790 | MS.gene069289:CDS |
| GATTGGCACTGAGAATAATG+TGG | 0.642695 | 3.3:-8249861 | MS.gene069289:CDS |
| GCATAATATGGATCAAGAAG+AGG | 0.649102 | 3.3:-8249888 | MS.gene069289:CDS |
| GTCAGCGACGAGAATATGAA+GGG | 0.650249 | 3.3:+8247713 | None:intergenic |
| ATCATGGCACAATTTGCACA+TGG | 0.656450 | 3.3:-8248289 | MS.gene069289:CDS |
| GAAGAGTGAAGAGAAGCACA+AGG | 0.656543 | 3.3:-8249033 | MS.gene069289:CDS |
| AGATGAAACTCGTAAAGGTG+AGG | 0.658810 | 3.3:+8247753 | None:intergenic |
| GAATCAAGAAGAGAGCAGGA+TGG | 0.659853 | 3.3:-8249723 | MS.gene069289:CDS |
| CCGGGACTGATAACATGCGA+AGG | 0.663098 | 3.3:-8247876 | MS.gene069289:CDS |
| AGATTATGAACACCGTCCTG+TGG | 0.665503 | 3.3:-8248124 | MS.gene069289:CDS |
| GGTTTACCAGATCCTTCAGG+AGG | 0.667297 | 3.3:+8249431 | None:intergenic |
| AACTTGCCACCAAAAGCTCG+GGG | 0.678427 | 3.3:+8248723 | None:intergenic |
| TTCATGTTGAAAGTCTACGA+AGG | 0.679592 | 3.3:-8248074 | MS.gene069289:CDS |
| AGTCAAATAAGGGTTCTAGG+AGG | 0.684219 | 3.3:-8249010 | MS.gene069289:CDS |
| AAACACCCATGACACGATAG+CGG | 0.684982 | 3.3:+8248871 | None:intergenic |
| TCCAAAAGAAATGAATCACG+GGG | 0.690485 | 3.3:+8248225 | None:intergenic |
| GGATCAGGAAGAGACCAAGA+TGG | 0.692400 | 3.3:-8249840 | MS.gene069289:CDS |
| ACATCAACTTGAGTGTCGAG+AGG | 0.711799 | 3.3:-8248253 | MS.gene069289:CDS |
| GGATCGAGAAGAGTCCAGAG+TGG | 0.771185 | 3.3:-8249801 | MS.gene069289:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTGTTAAGAAATCTC+TGG | - | chr3.3:8248307-8248326 | MS.gene069289:CDS | 20.0% |
| !! | AAAAGCAATAATTCAAGAAA+GGG | - | chr3.3:8249339-8249358 | MS.gene069289:CDS | 20.0% |
| !!! | GTTTTTTTATTGCTATATCA+TGG | - | chr3.3:8249217-8249236 | MS.gene069289:CDS | 20.0% |
| ! | CAAAAGCAATAATTCAAGAA+AGG | - | chr3.3:8249338-8249357 | MS.gene069289:CDS | 25.0% |
| ! | TAAAAAAACAGAAAACCAAG+AGG | + | chr3.3:8249206-8249225 | None:intergenic | 25.0% |
| ! | TTAGGATTAGAAGAAAATTC+AGG | + | chr3.3:8248068-8248087 | None:intergenic | 25.0% |
| ! | TTCTCATGTTAATCCTATAA+GGG | - | chr3.3:8249513-8249532 | MS.gene069289:CDS | 25.0% |
| ! | TTGTGAAGAAGAAAATAAAG+AGG | - | chr3.3:8248372-8248391 | MS.gene069289:CDS | 25.0% |
| !! | ATTTTCTTCTTCACAATCTT+GGG | + | chr3.3:8248368-8248387 | None:intergenic | 25.0% |
| !! | CTTTCTTGAATTATTGCTTT+TGG | + | chr3.3:8249340-8249359 | None:intergenic | 25.0% |
| !! | TATTTTCTTCTTCACAATCT+TGG | + | chr3.3:8248369-8248388 | None:intergenic | 25.0% |
| AAAACCAAAAACAAGCCAAA+TGG | - | chr3.3:8248689-8248708 | MS.gene069289:intron | 30.0% | |
| AAGAGGAAGAACAAAAAAGT+AGG | - | chr3.3:8248389-8248408 | MS.gene069289:CDS | 30.0% | |
| AGAAAATGATGACAACAAGA+AGG | - | chr3.3:8248211-8248230 | MS.gene069289:CDS | 30.0% | |
| CTAAAAAGGATGATGTTCTA+CGG | - | chr3.3:8248831-8248850 | MS.gene069289:CDS | 30.0% | |
| CTTCTCATGTTAATCCTATA+AGG | - | chr3.3:8249512-8249531 | MS.gene069289:CDS | 30.0% | |
| TCACGGTCATTCAAATAAAT+GGG | + | chr3.3:8249628-8249647 | None:intergenic | 30.0% | |
| TCATCAGGATGAAAAAGATA+AGG | - | chr3.3:8248583-8248602 | MS.gene069289:CDS | 30.0% | |
| TCTCCAAAAGAAATGAATCA+CGG | + | chr3.3:8249453-8249472 | None:intergenic | 30.0% | |
| TGTTCATAATCTCTCTCATA+AGG | + | chr3.3:8249541-8249560 | None:intergenic | 30.0% | |
| TTCACGGTCATTCAAATAAA+TGG | + | chr3.3:8249629-8249648 | None:intergenic | 30.0% | |
| ! | CATTTTCAAAAAGGCTATCA+AGG | - | chr3.3:8249113-8249132 | MS.gene069289:CDS | 30.0% |
| ! | TTTTCTTCTTCACAATCTTG+GGG | + | chr3.3:8248367-8248386 | None:intergenic | 30.0% |
| !! | ATTTTGCTGTCTGTTTATTC+TGG | - | chr3.3:8248998-8249017 | MS.gene069289:CDS | 30.0% |
| !! | TCACTCTTTTTGTCATTTGA+TGG | + | chr3.3:8248728-8248747 | None:intergenic | 30.0% |
| !! | TGGTTGGTCTTTATTAATGA+TGG | - | chr3.3:8249018-8249037 | MS.gene069289:CDS | 30.0% |
| !!! | TTTTTTGCCTTCAATGATTG+TGG | + | chr3.3:8248290-8248309 | None:intergenic | 30.0% |
| AAAAAGAGTGAAAAGCTTGG+TGG | - | chr3.3:8248737-8248756 | MS.gene069289:CDS | 35.0% | |
| AAATAAGAGAGAGAGTAACC+TGG | + | chr3.3:8248982-8249001 | None:intergenic | 35.0% | |
| AAGCACAAGGAGTCAAATAA+GGG | - | chr3.3:8248653-8248672 | MS.gene069289:intron | 35.0% | |
| AAGTGAAGGTAAGTCAGAAT+AGG | - | chr3.3:8248528-8248547 | MS.gene069289:CDS | 35.0% | |
| AATAAGAGAGAGAGTAACCT+GGG | + | chr3.3:8248981-8249000 | None:intergenic | 35.0% | |
| AGATAAGGAGATCAATCTGT+TGG | - | chr3.3:8248598-8248617 | MS.gene069289:CDS | 35.0% | |
| AGCAATAATTCAAGAAAGGG+AGG | - | chr3.3:8249342-8249361 | MS.gene069289:CDS | 35.0% | |
| AGGCATAACGATCATCTATA+TGG | + | chr3.3:8249681-8249700 | None:intergenic | 35.0% | |
| ATATTCAAATGTTCTGCTCC+AGG | - | chr3.3:8249243-8249262 | MS.gene069289:CDS | 35.0% | |
| ATTATCGAGCTTATGATCGA+AGG | - | chr3.3:8249476-8249495 | MS.gene069289:CDS | 35.0% | |
| ATTATTCTCAGTGCCAATCT+TGG | + | chr3.3:8247811-8247830 | None:intergenic | 35.0% | |
| ATTGGAGACTGAGCATAATA+TGG | - | chr3.3:8247773-8247792 | MS.gene069289:CDS | 35.0% | |
| CAGTAATGACAAAAGTCCTA+TGG | - | chr3.3:8248553-8248572 | MS.gene069289:CDS | 35.0% | |
| CTCCAAAAGAAATGAATCAC+GGG | + | chr3.3:8249452-8249471 | None:intergenic | 35.0% | |
| GACAAAAAGAGTGAAAAGCT+TGG | - | chr3.3:8248734-8248753 | MS.gene069289:CDS | 35.0% | |
| GAGAATCAAATGTTACCTCT+TGG | - | chr3.3:8249188-8249207 | MS.gene069289:CDS | 35.0% | |
| GATCAAGAAGAGAACAAGAT+GGG | - | chr3.3:8247912-8247931 | MS.gene069289:CDS | 35.0% | |
| GCATAATATGGATCAAGAAG+AGG | - | chr3.3:8247785-8247804 | MS.gene069289:CDS | 35.0% | |
| TAAAGAAAGAGCTTAAGTCC+AGG | + | chr3.3:8248863-8248882 | None:intergenic | 35.0% | |
| TAACGAGATGAAACTCGTAA+AGG | + | chr3.3:8249928-8249947 | None:intergenic | 35.0% | |
| TAACGATCATCTATATGGTC+AGG | + | chr3.3:8249676-8249695 | None:intergenic | 35.0% | |
| TCATGTTGAAAGTCTACGAA+GGG | - | chr3.3:8249600-8249619 | MS.gene069289:CDS | 35.0% | |
| TCCAAAAGAAATGAATCACG+GGG | + | chr3.3:8249451-8249470 | None:intergenic | 35.0% | |
| TCGTAGACTTTCAACATGAA+CGG | + | chr3.3:8249599-8249618 | None:intergenic | 35.0% | |
| TCTTCTTGATCGATGTTATG+AGG | + | chr3.3:8247981-8248000 | None:intergenic | 35.0% | |
| TGATCAAGAAGAGAGCAAAT+TGG | - | chr3.3:8247755-8247774 | MS.gene069289:CDS | 35.0% | |
| TGATCGATGTTATGAGGATT+AGG | + | chr3.3:8248086-8248105 | None:intergenic | 35.0% | |
| TTCATGTTGAAAGTCTACGA+AGG | - | chr3.3:8249599-8249618 | MS.gene069289:CDS | 35.0% | |
| TTTCTTCTTCACAATCTTGG+GGG | + | chr3.3:8248366-8248385 | None:intergenic | 35.0% | |
| ! | ATCTCTGGTTCCTAAACTTA+AGG | - | chr3.3:8248322-8248341 | MS.gene069289:CDS | 35.0% |
| ! | CATCATTTTCTGATGACTGA+GGG | + | chr3.3:8248202-8248221 | None:intergenic | 35.0% |
| ! | GCTTTTGGATGAGAAAAAAC+AGG | + | chr3.3:8249325-8249344 | None:intergenic | 35.0% |
| ! | TCATCATTTTCTGATGACTG+AGG | + | chr3.3:8248203-8248222 | None:intergenic | 35.0% |
| ! | TTTGATCTGAAGCTGCTATA+TGG | - | chr3.3:8248887-8248906 | MS.gene069289:CDS | 35.0% |
| !! | GCCTTTTTGAAAATGCTTTC+CGG | + | chr3.3:8249108-8249127 | None:intergenic | 35.0% |
| !! | TTCTTCTTGGCCTTAAGTTT+AGG | + | chr3.3:8248335-8248354 | None:intergenic | 35.0% |
| !!! | ACCGGAAAGCATTTTCAAAA+AGG | - | chr3.3:8249104-8249123 | MS.gene069289:CDS | 35.0% |
| AAAGCTCTCACAATGCAGAT+GGG | - | chr3.3:8248423-8248442 | MS.gene069289:intron | 40.0% | |
| ACATCGATCAAGAAGAGAGT+AGG | - | chr3.3:8247985-8248004 | MS.gene069289:CDS | 40.0% | |
| ACCACCTAAGGAGAAAAATC+AGG | - | chr3.3:8248490-8248509 | MS.gene069289:intron | 40.0% | |
| ACCTAAGGAGAAAAATCAGG+AGG | - | chr3.3:8248493-8248512 | MS.gene069289:intron | 40.0% | |
| ACTTGAATCAAGAAGAGAGC+AGG | - | chr3.3:8247946-8247965 | MS.gene069289:CDS | 40.0% | |
| ACTTGTGCAACAGTAAGTTC+TGG | + | chr3.3:8249168-8249187 | None:intergenic | 40.0% | |
| AGATGAAACTCGTAAAGGTG+AGG | + | chr3.3:8249923-8249942 | None:intergenic | 40.0% | |
| AGCTTATGATCGAAGGAATG+TGG | - | chr3.3:8249483-8249502 | MS.gene069289:CDS | 40.0% | |
| AGGAGTCAAATAAGGGTTCT+AGG | - | chr3.3:8248660-8248679 | MS.gene069289:intron | 40.0% | |
| ATCATGGCACAATTTGCACA+TGG | - | chr3.3:8249384-8249403 | MS.gene069289:CDS | 40.0% | |
| ATCGATATGGTGCTTCATCT+AGG | - | chr3.3:8249701-8249720 | MS.gene069289:CDS | 40.0% | |
| CAAAAACAAGCCAAATGGCA+CGG | - | chr3.3:8248694-8248713 | MS.gene069289:intron | 40.0% | |
| CACTGAGAATAATGTGGATC+AGG | - | chr3.3:8247818-8247837 | MS.gene069289:CDS | 40.0% | |
| CGTAGACTTTCAACATGAAC+GGG | + | chr3.3:8249598-8249617 | None:intergenic | 40.0% | |
| CTCTCATAAGGTTCCCTTAT+AGG | + | chr3.3:8249529-8249548 | None:intergenic | 40.0% | |
| CTTAAGGCCAAGAAGAAGAA+TGG | - | chr3.3:8248338-8248357 | MS.gene069289:CDS | 40.0% | |
| GAAGCACAAGGAGTCAAATA+AGG | - | chr3.3:8248652-8248671 | MS.gene069289:intron | 40.0% | |
| GATCAAGAAGAGAGCAAGAT+GGG | - | chr3.3:8248029-8248048 | MS.gene069289:CDS | 40.0% | |
| GATCGTTATGCCTATCGATA+TGG | - | chr3.3:8249688-8249707 | MS.gene069289:CDS | 40.0% | |
| GCTGCTATATGGAGTTTACA+AGG | - | chr3.3:8248898-8248917 | MS.gene069289:CDS | 40.0% | |
| GGATCAAGAAGAGAACAAGA+TGG | - | chr3.3:8247911-8247930 | MS.gene069289:CDS | 40.0% | |
| GGGTGTTTCATCTGCTAAAA+AGG | - | chr3.3:8248817-8248836 | MS.gene069289:CDS | 40.0% | |
| GGTTACTCCACAATCATTGA+AGG | - | chr3.3:8248280-8248299 | MS.gene069289:CDS | 40.0% | |
| GTCCTTAGTTTCATTCTGCT+GGG | + | chr3.3:8248468-8248487 | None:intergenic | 40.0% | |
| GTTTACAAGGCTTCATCTTC+TGG | - | chr3.3:8248911-8248930 | MS.gene069289:CDS | 40.0% | |
| TAAACCAGAGTTGAGTGAGA+AGG | - | chr3.3:8248259-8248278 | MS.gene069289:CDS | 40.0% | |
| TAAGGAGAAAAATCAGGAGG+CGG | - | chr3.3:8248496-8248515 | MS.gene069289:intron | 40.0% | |
| TACCCAGCAGAATGAAACTA+AGG | - | chr3.3:8248463-8248482 | MS.gene069289:intron | 40.0% | |
| TCGATATGGTGCTTCATCTA+GGG | - | chr3.3:8249702-8249721 | MS.gene069289:CDS | 40.0% | |
| TGATCAAGAAGAGAGCAAGA+TGG | - | chr3.3:8248028-8248047 | MS.gene069289:CDS | 40.0% | |
| TGCTGTCTGTTTATTCTGGT+TGG | - | chr3.3:8249002-8249021 | MS.gene069289:CDS | 40.0% | |
| TTCATCTAGGGATGCATACT+TGG | - | chr3.3:8249714-8249733 | MS.gene069289:CDS | 40.0% | |
| TTGAAAATGCTTTCCGGTAG+CGG | + | chr3.3:8249102-8249121 | None:intergenic | 40.0% | |
| TTGATCCATGTTATGCTCAG+TGG | + | chr3.3:8247898-8247917 | None:intergenic | 40.0% | |
| ! | AGATGAAGCACCATATCGAT+AGG | + | chr3.3:8249701-8249720 | None:intergenic | 40.0% |
| ! | GATTGGCACTGAGAATAATG+TGG | - | chr3.3:8247812-8247831 | MS.gene069289:CDS | 40.0% |
| ! | TCCCCGTGATTCATTTCTTT+TGG | - | chr3.3:8249447-8249466 | MS.gene069289:CDS | 40.0% |
| ! | TCCTGATTTTTCTCCTTAGG+TGG | + | chr3.3:8248494-8248513 | None:intergenic | 40.0% |
| ! | TTTTCTGATGACTGAGGGTT+AGG | + | chr3.3:8248197-8248216 | None:intergenic | 40.0% |
| !! | AGTCAAATAAGGGTTCTAGG+AGG | - | chr3.3:8248663-8248682 | MS.gene069289:intron | 40.0% |
| AAACACCCATGACACGATAG+CGG | + | chr3.3:8248805-8248824 | None:intergenic | 45.0% | |
| AAACTTGCCACCAAAAGCTC+GGG | + | chr3.3:8248954-8248973 | None:intergenic | 45.0% | |
| AACTAAGGACGAACCACCTA+AGG | - | chr3.3:8248478-8248497 | MS.gene069289:intron | 45.0% | |
| AAGGATACTCTTCCTCCTGA+AGG | - | chr3.3:8248230-8248249 | MS.gene069289:CDS | 45.0% | |
| AATTCAAGAAAGGGAGGCTC+CGG | - | chr3.3:8249348-8249367 | MS.gene069289:CDS | 45.0% | |
| ACCATCAAGTGCAGCCATAT+CGG | - | chr3.3:8249881-8249900 | MS.gene069289:CDS | 45.0% | |
| AGATTATGAACACCGTCCTG+TGG | - | chr3.3:8249549-8249568 | MS.gene069289:CDS | 45.0% | |
| ATAGCTGATGACTTCAGGTG+CGG | - | chr3.3:8249052-8249071 | MS.gene069289:CDS | 45.0% | |
| ATGTTATCAGTCCCGGCAAA+AGG | + | chr3.3:8249793-8249812 | None:intergenic | 45.0% | |
| CAAATGTTCTGCTCCAGGTT+AGG | - | chr3.3:8249248-8249267 | MS.gene069289:CDS | 45.0% | |
| CATGAACGGGAACATTGCTT+TGG | + | chr3.3:8249585-8249604 | None:intergenic | 45.0% | |
| CGATCAAGAAGAGAGTAGGA+TGG | - | chr3.3:8247989-8248008 | MS.gene069289:CDS | 45.0% | |
| CGTCCTTAGTTTCATTCTGC+TGG | + | chr3.3:8248469-8248488 | None:intergenic | 45.0% | |
| CTTGGCTCCTTTAAGTAGAG+AGG | - | chr3.3:8249732-8249751 | MS.gene069289:CDS | 45.0% | |
| GAAACTTGCCACCAAAAGCT+CGG | + | chr3.3:8248955-8248974 | None:intergenic | 45.0% | |
| GAAAGCTCTCACAATGCAGA+TGG | - | chr3.3:8248422-8248441 | MS.gene069289:intron | 45.0% | |
| GAATCAAGAAGAGAGCAGGA+TGG | - | chr3.3:8247950-8247969 | MS.gene069289:CDS | 45.0% | |
| GATCAAGAAGAGGCCAAGAT+TGG | - | chr3.3:8247795-8247814 | MS.gene069289:CDS | 45.0% | |
| GATCAGGAAGAGAGCAAGAT+GGG | - | chr3.3:8247717-8247736 | MS.gene069289:CDS | 45.0% | |
| GATGGTCACTGAGCATAACA+TGG | - | chr3.3:8247851-8247870 | MS.gene069289:CDS | 45.0% | |
| GGAGAGAGATCGTTGAAGAT+AGG | - | chr3.3:8249818-8249837 | MS.gene069289:CDS | 45.0% | |
| GGCGGAAAACAATGAAGTGA+AGG | - | chr3.3:8248514-8248533 | MS.gene069289:CDS | 45.0% | |
| GTAACCTTCTCACTCAACTC+TGG | + | chr3.3:8248266-8248285 | None:intergenic | 45.0% | |
| GTTATGCTCAGTGACCATCT+TGG | + | chr3.3:8247850-8247869 | None:intergenic | 45.0% | |
| TACAAGGCTTCATCTTCTGG+TGG | - | chr3.3:8248914-8248933 | MS.gene069289:CDS | 45.0% | |
| TCATCTCGTTACTCTTTCGC+TGG | - | chr3.3:8249937-8249956 | MS.gene069289:CDS | 45.0% | |
| TCCTATGGAGAAGAGTCATC+AGG | - | chr3.3:8248568-8248587 | MS.gene069289:CDS | 45.0% | |
| TCCTGATGACTCTTCTCCAT+AGG | + | chr3.3:8248572-8248591 | None:intergenic | 45.0% | |
| TGAAAATGCTTTCCGGTAGC+GGG | + | chr3.3:8249101-8249120 | None:intergenic | 45.0% | |
| TGCTGATAGCTGATGACTTC+AGG | - | chr3.3:8249047-8249066 | MS.gene069289:CDS | 45.0% | |
| TGTTTCCGCTATCGTGTCAT+GGG | - | chr3.3:8248797-8248816 | MS.gene069289:CDS | 45.0% | |
| TTCTGATTCTTTCCCGCTAC+CGG | - | chr3.3:8249086-8249105 | MS.gene069289:CDS | 45.0% | |
| TTGCACATGGAAAGAGCTGT+TGG | - | chr3.3:8249397-8249416 | MS.gene069289:CDS | 45.0% | |
| TTGTTTCCGCTATCGTGTCA+TGG | - | chr3.3:8248796-8248815 | MS.gene069289:CDS | 45.0% | |
| ! | ACTAGACTTTTCCGACCAGT+TGG | - | chr3.3:8249277-8249296 | MS.gene069289:CDS | 45.0% |
| ! | GAAGAGTGAAGAGAAGCACA+AGG | - | chr3.3:8248640-8248659 | MS.gene069289:intron | 45.0% |
| ! | GAGTATAGCTCTGCTGTTCA+CGG | + | chr3.3:8249645-8249664 | None:intergenic | 45.0% |
| ! | GCCTCCTGATTTTTCTCCTT+AGG | + | chr3.3:8248497-8248516 | None:intergenic | 45.0% |
| ! | TCTGGTTTACCAGATCCTTC+AGG | + | chr3.3:8248248-8248267 | None:intergenic | 45.0% |
| !! | ACACGATAGCGGAAACAATC+AGG | + | chr3.3:8248794-8248813 | None:intergenic | 45.0% |
| !! | ACATCAACTTGAGTGTCGAG+AGG | - | chr3.3:8249420-8249439 | MS.gene069289:CDS | 45.0% |
| !!! | CGTGCCATTTGGCTTGTTTT+TGG | + | chr3.3:8248696-8248715 | None:intergenic | 45.0% |
| AACTTGCCACCAAAAGCTCG+GGG | + | chr3.3:8248953-8248972 | None:intergenic | 50.0% | |
| ACTCTTCCTCCTGAAGGATC+TGG | - | chr3.3:8248236-8248255 | MS.gene069289:CDS | 50.0% | |
| ACTGCTGAATGAGCTCCAAC+TGG | + | chr3.3:8249295-8249314 | None:intergenic | 50.0% | |
| AGTGGCCACTGAGCATAACA+TGG | - | chr3.3:8247890-8247909 | MS.gene069289:CDS | 50.0% | |
| ATTCAAGAAAGGGAGGCTCC+GGG | - | chr3.3:8249349-8249368 | MS.gene069289:CDS | 50.0% | |
| CATCAAGTGCAGCCATATCG+GGG | - | chr3.3:8249883-8249902 | MS.gene069289:CDS | 50.0% | |
| CCATCAAGTGCAGCCATATC+GGG | - | chr3.3:8249882-8249901 | MS.gene069289:CDS | 50.0% | |
| CCTTCGCATGTTATCAGTCC+CGG | + | chr3.3:8249800-8249819 | None:intergenic | 50.0% | |
| CTCCCAGCTCGTATTTGGTT+GGG | - | chr3.3:8249761-8249780 | MS.gene069289:CDS | 50.0% | |
| CTGAATGAGCTCCAACTGGT+CGG | + | chr3.3:8249291-8249310 | None:intergenic | 50.0% | |
| GATGTTCTACGGATCAAGCC+TGG | - | chr3.3:8248842-8248861 | MS.gene069289:CDS | 50.0% | |
| GCGATGGCCTCTCTACTTAA+AGG | + | chr3.3:8249742-8249761 | None:intergenic | 50.0% | |
| GGATCAGGAAGAGACCAAGA+TGG | - | chr3.3:8247833-8247852 | MS.gene069289:CDS | 50.0% | |
| GGATCAGGAAGAGAGCAAGA+TGG | - | chr3.3:8247716-8247735 | MS.gene069289:CDS | 50.0% | |
| GGGGGAACCATTCTTCTTCT+TGG | + | chr3.3:8248348-8248367 | None:intergenic | 50.0% | |
| GGTTTACCAGATCCTTCAGG+AGG | + | chr3.3:8248245-8248264 | None:intergenic | 50.0% | |
| GTCTAGTGAGCTTCCTAACC+TGG | + | chr3.3:8249264-8249283 | None:intergenic | 50.0% | |
| TCCAACTTGTCTCCCCGATA+TGG | + | chr3.3:8249898-8249917 | None:intergenic | 50.0% | |
| TCCCAGCTCGTATTTGGTTG+GGG | - | chr3.3:8249762-8249781 | MS.gene069289:CDS | 50.0% | |
| ! | AAGCTTGAACCCCGAGCTTT+TGG | - | chr3.3:8248941-8248960 | MS.gene069289:CDS | 50.0% |
| ! | GGCTGCACTTGATGGTAATC+AGG | + | chr3.3:8249877-8249896 | None:intergenic | 50.0% |
| !! | GGAACATTGCTTTGGTAGCG+AGG | + | chr3.3:8249577-8249596 | None:intergenic | 50.0% |
| !! | GGACTCTTTTCCGTGCCATT+TGG | + | chr3.3:8248707-8248726 | None:intergenic | 50.0% |
| AGAGAGAGAGTAACCTGGGC+AGG | + | chr3.3:8248977-8248996 | None:intergenic | 55.0% | |
| CAAATACGAGCTGGGAGCGA+TGG | + | chr3.3:8249758-8249777 | None:intergenic | 55.0% | |
| CATCGCTCCCAGCTCGTATT+TGG | - | chr3.3:8249756-8249775 | MS.gene069289:CDS | 55.0% | |
| CCCAGCTCGTATTTGGTTGG+GGG | - | chr3.3:8249763-8249782 | MS.gene069289:CDS | 55.0% | |
| CCCCCAACCAAATACGAGCT+GGG | + | chr3.3:8249766-8249785 | None:intergenic | 55.0% | |
| CCCGATATGGCTGCACTTGA+TGG | + | chr3.3:8249885-8249904 | None:intergenic | 55.0% | |
| CCGGGACTGATAACATGCGA+AGG | - | chr3.3:8249797-8249816 | MS.gene069289:CDS | 55.0% | |
| GCCATATCGGGGAGACAAGT+TGG | - | chr3.3:8249894-8249913 | MS.gene069289:CDS | 55.0% | |
| GCTCCCAGCTCGTATTTGGT+TGG | - | chr3.3:8249760-8249779 | MS.gene069289:CDS | 55.0% | |
| GGATCGAGAAGAGTCCAGAG+TGG | - | chr3.3:8247872-8247891 | MS.gene069289:CDS | 55.0% | |
| GTTATGCTCAGTGGCCACTC+TGG | + | chr3.3:8247889-8247908 | None:intergenic | 55.0% | |
| TCCCCCAACCAAATACGAGC+TGG | + | chr3.3:8249767-8249786 | None:intergenic | 55.0% | |
| ! | CTTGAACCCCGAGCTTTTGG+TGG | - | chr3.3:8248944-8248963 | MS.gene069289:CDS | 55.0% |
| ! | GTTGGGGGAAGACCTTTTGC+CGG | - | chr3.3:8249778-8249797 | MS.gene069289:CDS | 55.0% |
| ! | TTGGGGGAAGACCTTTTGCC+GGG | - | chr3.3:8249779-8249798 | MS.gene069289:CDS | 55.0% |
| !! | CTTTGGTAGCGAGGTTCCAC+AGG | + | chr3.3:8249568-8249587 | None:intergenic | 55.0% |
| AAGAAAGGGAGGCTCCGGGT+CGG | - | chr3.3:8249353-8249372 | MS.gene069289:CDS | 60.0% | |
| GGTAGCGAGGTTCCACAGGA+CGG | + | chr3.3:8249564-8249583 | None:intergenic | 60.0% | |
| TGGTGGCAAGTTTCCTGCCC+AGG | - | chr3.3:8248961-8248980 | MS.gene069289:CDS | 60.0% | |
| AGAAAGGGAGGCTCCGGGTC+GGG | - | chr3.3:8249354-8249373 | MS.gene069289:CDS | 65.0% | |
| CATGATCCCCTGACCCGACC+CGG | + | chr3.3:8249370-8249389 | None:intergenic | 65.0% | |
| CGGGTCGGGTCAGGGGATCA+TGG | - | chr3.3:8249368-8249387 | MS.gene069289:CDS | 70.0% | |
| GAGGCTCCGGGTCGGGTCAG+GGG | - | chr3.3:8249361-8249380 | MS.gene069289:CDS | 75.0% | |
| GGAGGCTCCGGGTCGGGTCA+GGG | - | chr3.3:8249360-8249379 | MS.gene069289:CDS | 75.0% | |
| ! | GGGAGGCTCCGGGTCGGGTC+AGG | - | chr3.3:8249359-8249378 | MS.gene069289:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 8247714 | 8249981 | 8247714 | ID=MS.gene069289 |
| chr3.3 | mRNA | 8247714 | 8249981 | 8247714 | ID=MS.gene069289.t1;Parent=MS.gene069289 |
| chr3.3 | exon | 8248713 | 8249981 | 8248713 | ID=MS.gene069289.t1.exon1;Parent=MS.gene069289.t1 |
| chr3.3 | CDS | 8248713 | 8249981 | 8248713 | ID=cds.MS.gene069289.t1;Parent=MS.gene069289.t1 |
| chr3.3 | exon | 8248510 | 8248626 | 8248510 | ID=MS.gene069289.t1.exon2;Parent=MS.gene069289.t1 |
| chr3.3 | CDS | 8248510 | 8248626 | 8248510 | ID=cds.MS.gene069289.t1;Parent=MS.gene069289.t1 |
| chr3.3 | exon | 8247714 | 8248430 | 8247714 | ID=MS.gene069289.t1.exon3;Parent=MS.gene069289.t1 |
| chr3.3 | CDS | 8247714 | 8248430 | 8247714 | ID=cds.MS.gene069289.t1;Parent=MS.gene069289.t1 |
| Gene Sequence |
| Protein sequence |
