Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071517.t1 | XP_003607905.1 | 97.3 | 623 | 15 | 1 | 1 | 623 | 1 | 621 | 0.00E+00 | 1213.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071517.t1 | Q88BD4 | 28.3 | 434 | 277 | 13 | 93 | 521 | 17 | 421 | 7.3e-38 | 160.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071517.t1 | G7JJZ2 | 97.3 | 623 | 15 | 1 | 1 | 623 | 1 | 621 | 0.0e+00 | 1213.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050133 | MS.gene071517 | -0.821017 | 5.05E-53 | -1.69E-46 |
| MS.gene050426 | MS.gene071517 | -0.821042 | 4.98E-53 | -1.69E-46 |
| MS.gene050811 | MS.gene071517 | -0.828647 | 8.00E-55 | -1.69E-46 |
| MS.gene05081 | MS.gene071517 | 0.827176 | 1.81E-54 | -1.69E-46 |
| MS.gene051208 | MS.gene071517 | 0.810092 | 1.37E-50 | -1.69E-46 |
| MS.gene051244 | MS.gene071517 | 0.816094 | 6.60E-52 | -1.69E-46 |
| MS.gene051525 | MS.gene071517 | 0.839779 | 1.29E-57 | -1.69E-46 |
| MS.gene051552 | MS.gene071517 | -0.848079 | 7.70E-60 | -1.69E-46 |
| MS.gene052011 | MS.gene071517 | -0.812191 | 4.80E-51 | -1.69E-46 |
| MS.gene052134 | MS.gene071517 | 0.819784 | 9.68E-53 | -1.69E-46 |
| MS.gene052589 | MS.gene071517 | 0.841935 | 3.51E-58 | -1.69E-46 |
| MS.gene053330 | MS.gene071517 | 0.871786 | 5.24E-67 | -1.69E-46 |
| MS.gene054102 | MS.gene071517 | 0.806203 | 9.22E-50 | -1.69E-46 |
| MS.gene054107 | MS.gene071517 | 0.830104 | 3.54E-55 | -1.69E-46 |
| MS.gene054110 | MS.gene071517 | 0.822606 | 2.16E-53 | -1.69E-46 |
| MS.gene054343 | MS.gene071517 | 0.850507 | 1.62E-60 | -1.69E-46 |
| MS.gene054344 | MS.gene071517 | 0.829283 | 5.61E-55 | -1.69E-46 |
| MS.gene054719 | MS.gene071517 | 0.805906 | 1.06E-49 | -1.69E-46 |
| MS.gene054884 | MS.gene071517 | -0.820156 | 7.96E-53 | -1.69E-46 |
| MS.gene055370 | MS.gene071517 | 0.847052 | 1.48E-59 | -1.69E-46 |
| MS.gene055488 | MS.gene071517 | -0.801928 | 7.14E-49 | -1.69E-46 |
| MS.gene05556 | MS.gene071517 | 0.804217 | 2.40E-49 | -1.69E-46 |
| MS.gene056351 | MS.gene071517 | 0.88423 | 2.29E-71 | -1.69E-46 |
| MS.gene056633 | MS.gene071517 | 0.881964 | 1.55E-70 | -1.69E-46 |
| MS.gene056877 | MS.gene071517 | 0.844734 | 6.29E-59 | -1.69E-46 |
| MS.gene057196 | MS.gene071517 | 0.85371 | 2.00E-61 | -1.69E-46 |
| MS.gene057332 | MS.gene071517 | 0.847599 | 1.04E-59 | -1.69E-46 |
| MS.gene058418 | MS.gene071517 | -0.832249 | 1.05E-55 | -1.69E-46 |
| MS.gene058444 | MS.gene071517 | 0.833614 | 4.82E-56 | -1.69E-46 |
| MS.gene058746 | MS.gene071517 | 0.876225 | 1.65E-68 | -1.69E-46 |
| MS.gene059061 | MS.gene071517 | -0.811398 | 7.14E-51 | -1.69E-46 |
| MS.gene059303 | MS.gene071517 | 0.819894 | 9.14E-53 | -1.69E-46 |
| MS.gene059512 | MS.gene071517 | 0.96107 | 2.81E-119 | -1.69E-46 |
| MS.gene061231 | MS.gene071517 | 0.820213 | 7.73E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene071517 | MS.gene49437 | PPI |
| MS.gene34039 | MS.gene071517 | PPI |
| MS.gene071517 | MS.gene005970 | PPI |
| MS.gene071517 | MS.gene54796 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071517.t1 | MTR_4g084270 | 97.271 | 623 | 15 | 1 | 1 | 623 | 1 | 621 | 0.0 | 1255 |
| MS.gene071517.t1 | MTR_1g094980 | 42.908 | 557 | 273 | 12 | 73 | 617 | 18 | 541 | 1.81e-136 | 409 |
| MS.gene071517.t1 | MTR_1g094980 | 40.640 | 625 | 315 | 16 | 15 | 617 | 23 | 613 | 3.15e-135 | 409 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071517.t1 | AT1G70820 | 73.710 | 620 | 151 | 6 | 1 | 617 | 1 | 611 | 0.0 | 946 |
| MS.gene071517.t1 | AT1G70820 | 74.457 | 599 | 141 | 6 | 1 | 596 | 1 | 590 | 0.0 | 923 |
| MS.gene071517.t1 | AT5G17530 | 43.643 | 527 | 256 | 10 | 75 | 590 | 20 | 516 | 6.03e-134 | 403 |
| MS.gene071517.t1 | AT5G17530 | 43.633 | 534 | 258 | 11 | 70 | 590 | 52 | 555 | 2.10e-133 | 403 |
| MS.gene071517.t1 | AT5G17530 | 43.633 | 534 | 258 | 11 | 70 | 590 | 52 | 555 | 2.10e-133 | 403 |
| MS.gene071517.t1 | AT5G17530 | 43.633 | 534 | 258 | 11 | 70 | 590 | 52 | 555 | 2.10e-133 | 403 |
| MS.gene071517.t1 | AT5G17530 | 43.633 | 534 | 258 | 11 | 70 | 590 | 52 | 555 | 2.10e-133 | 403 |
| MS.gene071517.t1 | AT5G17530 | 43.633 | 534 | 258 | 11 | 70 | 590 | 85 | 588 | 6.18e-133 | 403 |
| MS.gene071517.t1 | AT5G17530 | 44.466 | 524 | 248 | 11 | 70 | 580 | 85 | 578 | 4.28e-132 | 402 |
Find 142 sgRNAs with CRISPR-Local
Find 245 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGATAAGTTTGTTGAAAA+TGG | 0.159254 | 4.4:-28145138 | MS.gene071517:CDS |
| AACTCCACTTAAGGGATTTC+AGG | 0.200454 | 4.4:-28147603 | MS.gene071517:intron |
| TCTCCTTGATGATTTCTCTT+AGG | 0.241263 | 4.4:+28147651 | None:intergenic |
| GTACAGGAAGGGAGGCTTAA+AGG | 0.243975 | 4.4:-28145762 | MS.gene071517:intron |
| ATGAGTTTGTCACCGTTTAT+TGG | 0.279165 | 4.4:+28146578 | None:intergenic |
| GATATCCTCTTGAGAATGTT+AGG | 0.280295 | 4.4:-28148122 | MS.gene071517:CDS |
| GAGGCAATATCAGAGAGTTT+TGG | 0.300966 | 4.4:-28148180 | MS.gene071517:CDS |
| CTCCTTTGTCAATGACATTT+CGG | 0.316509 | 4.4:+28146423 | None:intergenic |
| TGCAAGTTCACAGCAATGTT+TGG | 0.318198 | 4.4:+28145359 | None:intergenic |
| TGGTTGTATGGTGTTTGATA+TGG | 0.318441 | 4.4:-28148025 | MS.gene071517:CDS |
| AATGGTTTAGAGAAGGAAAA+AGG | 0.330346 | 4.4:-28148144 | MS.gene071517:CDS |
| GCATTATGAAACTCCACTTA+AGG | 0.337071 | 4.4:-28147612 | MS.gene071517:CDS |
| TGCTTTAGCATTTCGAGGTT+CGG | 0.347623 | 4.4:+28146054 | None:intergenic |
| TTAGAAAATTCAGCTGATCT+TGG | 0.348367 | 4.4:-28146656 | MS.gene071517:CDS |
| CATTATGAAACTCCACTTAA+GGG | 0.365922 | 4.4:-28147611 | MS.gene071517:CDS |
| TGTCTATGATGCTTCAATAA+TGG | 0.374026 | 4.4:-28147953 | MS.gene071517:intron |
| CTTATTACAGATTTATTGAA+TGG | 0.379212 | 4.4:+28148354 | None:intergenic |
| TTCAAACCATTGCGTGTGTA+AGG | 0.384986 | 4.4:+28147827 | None:intergenic |
| GTGAATGCTGGAAACGGTTC+AGG | 0.385357 | 4.4:-28146821 | MS.gene071517:CDS |
| ATGAAGAATTGGACAAGATT+AGG | 0.394518 | 4.4:-28148287 | MS.gene071517:CDS |
| AGAAGATGAGAAACCAAGTT+TGG | 0.394739 | 4.4:+28148380 | None:intergenic |
| GTAATAAGTGTGAAATGTTA+TGG | 0.397911 | 4.4:-28148339 | MS.gene071517:CDS |
| GCAAGTTCACAGCAATGTTT+GGG | 0.402997 | 4.4:+28145360 | None:intergenic |
| GAAAACCATTTCCTTGATGA+TGG | 0.403160 | 4.4:-28146332 | MS.gene071517:intron |
| TGTACGAGCATCGGTTACTA+TGG | 0.406310 | 4.4:+28146511 | None:intergenic |
| TAGACTCATGTGGTGATTGT+TGG | 0.408525 | 4.4:-28145731 | MS.gene071517:CDS |
| TTTGGGGAGTGGGTTATCAA+TGG | 0.408829 | 4.4:-28148162 | MS.gene071517:CDS |
| GGTTGTATGGTGTTTGATAT+GGG | 0.413997 | 4.4:-28148024 | MS.gene071517:CDS |
| TACAGGAAGGGAGGCTTAAA+GGG | 0.417177 | 4.4:-28145761 | MS.gene071517:intron |
| CATGGCTGCCATTGTATTGA+AGG | 0.421469 | 4.4:-28146549 | MS.gene071517:CDS |
| TTGAGTGTTGCAGTGTTTGC+CGG | 0.424973 | 4.4:-28148060 | MS.gene071517:CDS |
| ATATCTTTGCAAACCAAACT+TGG | 0.425190 | 4.4:-28148393 | MS.gene071517:CDS |
| TCTTGCTCGTGCTGGTTGTA+TGG | 0.433556 | 4.4:-28148037 | MS.gene071517:CDS |
| TCGGGATTGGGAATGTGATT+AGG | 0.440559 | 4.4:+28146716 | None:intergenic |
| CAGAATGGTTCGGATGTTAG+AGG | 0.441225 | 4.4:-28148258 | MS.gene071517:CDS |
| AAGCTTGGTGCAGATACCTT+TGG | 0.445592 | 4.4:-28146770 | MS.gene071517:CDS |
| ACTAACCATCATCAAGGAAA+TGG | 0.455559 | 4.4:+28146327 | None:intergenic |
| CTAAGTTCTACTGATTCATA+AGG | 0.458468 | 4.4:+28146091 | None:intergenic |
| AGTAGTGGTGGATGAAGAAT+TGG | 0.460522 | 4.4:-28148298 | MS.gene071517:CDS |
| TCGGTTACTATGGTTGATCC+TGG | 0.462108 | 4.4:+28146521 | None:intergenic |
| TGTTACTATCATTCTTTGCT+AGG | 0.462385 | 4.4:-28148423 | MS.gene071517:CDS |
| CAAACCTGAAATCCCTTAAG+TGG | 0.467227 | 4.4:+28147599 | None:intergenic |
| TTTGCCGGTCTTGCTCGTGC+TGG | 0.468617 | 4.4:-28148045 | MS.gene071517:CDS |
| GGACGCGACCCTCGAGTCAC+AGG | 0.474920 | 4.4:-28148090 | MS.gene071517:CDS |
| GTTGCATTGGAAGGCGAGAA+AGG | 0.478585 | 4.4:-28148234 | MS.gene071517:CDS |
| AACAAAGGGAATCCAATAAA+CGG | 0.482733 | 4.4:-28146590 | MS.gene071517:CDS |
| TGATTAGGAAACATGCCATC+AGG | 0.483044 | 4.4:+28146731 | None:intergenic |
| AGACTCATGTGGTGATTGTT+GGG | 0.486205 | 4.4:-28145730 | MS.gene071517:CDS |
| CATCTTATGATTGAAACATC+TGG | 0.487363 | 4.4:-28146371 | MS.gene071517:CDS |
| CCTCGAAATGCTAAAGCAAA+AGG | 0.489207 | 4.4:-28146049 | MS.gene071517:CDS |
| CCTCCACGGCAGGAGGAGTA+AGG | 0.491033 | 4.4:+28148199 | None:intergenic |
| GGTGAAAATTATAATTGAAA+TGG | 0.492081 | 4.4:-28146176 | MS.gene071517:CDS |
| TCTGATATTGCCTCCACGGC+AGG | 0.494254 | 4.4:+28148189 | None:intergenic |
| ACTAAGTTTATAACTGATAG+AGG | 0.494389 | 4.4:-28146476 | MS.gene071517:CDS |
| CTTATGAATCAGTAGAACTT+AGG | 0.496088 | 4.4:-28146090 | MS.gene071517:CDS |
| TATCAATTTGAGCAATGTCT+AGG | 0.498567 | 4.4:+28145154 | None:intergenic |
| TAGGAGGCTTCAGAATGGTT+CGG | 0.500282 | 4.4:-28148268 | MS.gene071517:CDS |
| GTGATTGTTGGGTGAGTGAA+GGG | 0.507653 | 4.4:-28145719 | MS.gene071517:CDS |
| TCAAGGAGGTTGCTTGTCAA+TGG | 0.508461 | 4.4:-28145327 | MS.gene071517:CDS |
| TGAACATGGACAACATGGTT+GGG | 0.514106 | 4.4:-28145408 | MS.gene071517:CDS |
| ATGAACATGGACAACATGGT+TGG | 0.518204 | 4.4:-28145409 | MS.gene071517:CDS |
| GAGAATGTTAGGGTGTCTCT+TGG | 0.518716 | 4.4:-28148111 | MS.gene071517:CDS |
| AAGCTTGGTGGATCAGATGA+AGG | 0.519389 | 4.4:-28146145 | MS.gene071517:CDS |
| ATTGAAGCATCATAGACAAA+TGG | 0.520839 | 4.4:+28147958 | None:intergenic |
| CTACAGATAATAGTGAATGC+TGG | 0.522007 | 4.4:-28146833 | MS.gene071517:intron |
| TCGTAAATATGCAAATAGAT+TGG | 0.522642 | 4.4:-28147741 | MS.gene071517:CDS |
| ATATTGATGCTCAAATGTAC+AGG | 0.524473 | 4.4:-28145665 | MS.gene071517:intron |
| TGACAAACTCATTGCTCTCA+TGG | 0.524707 | 4.4:-28146567 | MS.gene071517:CDS |
| ATATAATGAAGGGGCCTACA+TGG | 0.525333 | 4.4:-28146200 | MS.gene071517:intron |
| TTTGAGCATCAATATGAGCC+GGG | 0.527926 | 4.4:+28145673 | None:intergenic |
| CATATTGTAAATCAGGCTGA+TGG | 0.528700 | 4.4:+28145114 | None:intergenic |
| GGTGATTGTTGGGTGAGTGA+AGG | 0.531696 | 4.4:-28145720 | MS.gene071517:CDS |
| ATTTGAGCATCAATATGAGC+CGG | 0.540769 | 4.4:+28145672 | None:intergenic |
| ATATCCTCTTGAGAATGTTA+GGG | 0.543188 | 4.4:-28148121 | MS.gene071517:CDS |
| ACAACCAGCACGAGCAAGAC+CGG | 0.545469 | 4.4:+28148041 | None:intergenic |
| ATAATAGTGAATGCTGGAAA+CGG | 0.546802 | 4.4:-28146827 | MS.gene071517:CDS |
| TTTGAGATGCAGAGAGCCAA+AGG | 0.548288 | 4.4:+28146754 | None:intergenic |
| ATTGTATTGAAGGAAAATCC+AGG | 0.558299 | 4.4:-28146539 | MS.gene071517:CDS |
| CACCATTGTTTATACCGCGT+TGG | 0.558868 | 4.4:-28146449 | MS.gene071517:CDS |
| AACAATGAACATGGACAACA+TGG | 0.562336 | 4.4:-28145413 | MS.gene071517:CDS |
| TAACTAACTAACCATCATCA+AGG | 0.564044 | 4.4:+28146321 | None:intergenic |
| GGTGGATCAGATGAAGGGAT+TGG | 0.566186 | 4.4:-28146139 | MS.gene071517:CDS |
| CGACCTTACTCCTCCTGCCG+TGG | 0.566388 | 4.4:-28148202 | MS.gene071517:CDS |
| GGTTATCAATGGTTTAGAGA+AGG | 0.568136 | 4.4:-28148151 | MS.gene071517:CDS |
| TACGATGTCTTAGACAAGCT+TGG | 0.568721 | 4.4:-28146785 | MS.gene071517:CDS |
| CATTTGCCTTACACACGCAA+TGG | 0.572460 | 4.4:-28147833 | MS.gene071517:CDS |
| GGATGTTAGAGGAGTTGCAT+TGG | 0.576031 | 4.4:-28148247 | MS.gene071517:CDS |
| GCGGCGTGGTTGATAACAAA+GGG | 0.576808 | 4.4:-28146604 | MS.gene071517:CDS |
| ATTTAGACCCTGTGACTCGA+GGG | 0.578792 | 4.4:+28148082 | None:intergenic |
| CAAAGGAGTTCAGCTTAACA+AGG | 0.582640 | 4.4:-28146408 | MS.gene071517:CDS |
| CCTTACTCCTCCTGCCGTGG+AGG | 0.582653 | 4.4:-28148199 | MS.gene071517:CDS |
| AACTTGCAATCATCTGCTCA+AGG | 0.583771 | 4.4:-28145344 | MS.gene071517:CDS |
| GTTAGAGGAGTTGCATTGGA+AGG | 0.585950 | 4.4:-28148243 | MS.gene071517:CDS |
| TCTCTGCATCTCAAACCTGA+TGG | 0.591260 | 4.4:-28146746 | MS.gene071517:CDS |
| AGTGGAGTTTCATAATGCAA+AGG | 0.592830 | 4.4:+28147617 | None:intergenic |
| ATATTGTAAATCAGGCTGAT+GGG | 0.593285 | 4.4:+28145115 | None:intergenic |
| ATGTTGCTGTACAGGAAGGG+AGG | 0.593434 | 4.4:-28145770 | MS.gene071517:intron |
| AAGAATTGGACAAGATTAGG+AGG | 0.597154 | 4.4:-28148284 | MS.gene071517:CDS |
| GATATTGCCTCCACGGCAGG+AGG | 0.597822 | 4.4:+28148192 | None:intergenic |
| AAGATTAGGAGGCTTCAGAA+TGG | 0.602089 | 4.4:-28148273 | MS.gene071517:CDS |
| ATGGTAAGAATGAAGCTTGG+TGG | 0.602153 | 4.4:-28146157 | MS.gene071517:CDS |
| GAAATGGTAAGAATGAAGCT+TGG | 0.602393 | 4.4:-28146160 | MS.gene071517:CDS |
| ACTCTCTGATATTGCCTCCA+CGG | 0.605057 | 4.4:+28148185 | None:intergenic |
| TCCCGAGGACAAAATTGCCA+TGG | 0.605099 | 4.4:-28146699 | MS.gene071517:CDS |
| GGAAGGGAGGCTTAAAGGGT+GGG | 0.606977 | 4.4:-28145757 | MS.gene071517:CDS |
| GACGCGACCCTCGAGTCACA+GGG | 0.611240 | 4.4:-28148089 | MS.gene071517:CDS |
| GATACCGATGTTGACAGAAG+CGG | 0.611913 | 4.4:-28146623 | MS.gene071517:CDS |
| AATTTAGACCCTGTGACTCG+AGG | 0.613432 | 4.4:+28148081 | None:intergenic |
| AATGTGCTCATGAAACAAGC+GGG | 0.613902 | 4.4:+28147988 | None:intergenic |
| AAATGCTAAAGCAAAAGGAT+CGG | 0.620165 | 4.4:-28146044 | MS.gene071517:CDS |
| GAAGCATCATAGACAAATGG+AGG | 0.622415 | 4.4:+28147961 | None:intergenic |
| TGCTAAAGCAAAAGGATCGG+AGG | 0.622933 | 4.4:-28146041 | MS.gene071517:CDS |
| GGAGTTCAGCTTAACAAGGA+GGG | 0.622995 | 4.4:-28146404 | MS.gene071517:CDS |
| CAATGTGCTCATGAAACAAG+CGG | 0.623267 | 4.4:+28147987 | None:intergenic |
| GACACCCTAACATTCTCAAG+AGG | 0.625174 | 4.4:+28148117 | None:intergenic |
| CGACATGCTTGTACGAGCAT+CGG | 0.627032 | 4.4:+28146502 | None:intergenic |
| AGGAAGGGAGGCTTAAAGGG+TGG | 0.627499 | 4.4:-28145758 | MS.gene071517:CDS |
| AGCGGCGTGGTTGATAACAA+AGG | 0.627508 | 4.4:-28146605 | MS.gene071517:CDS |
| AGCTTGGTGGATCAGATGAA+GGG | 0.629122 | 4.4:-28146144 | MS.gene071517:CDS |
| AATGCTGGAAACGGTTCAGG+AGG | 0.629528 | 4.4:-28146818 | MS.gene071517:CDS |
| TACCGAAATGTCATTGACAA+AGG | 0.633169 | 4.4:-28146425 | MS.gene071517:CDS |
| ATGATTGAAACATCTGGTCA+CGG | 0.638606 | 4.4:-28146365 | MS.gene071517:CDS |
| TGCAAAGTATGATGAAGTAG+TGG | 0.641435 | 4.4:-28148313 | MS.gene071517:CDS |
| AACATGGTTGGGTACACATG+AGG | 0.643450 | 4.4:-28145397 | MS.gene071517:CDS |
| AAAGTATCAAACAATGAACA+TGG | 0.643511 | 4.4:-28145422 | MS.gene071517:CDS |
| GCACCTAAGAGAAATCATCA+AGG | 0.645515 | 4.4:-28147654 | MS.gene071517:CDS |
| AACCAACGCGGTATAAACAA+TGG | 0.648208 | 4.4:+28146447 | None:intergenic |
| TTTAAGCAGAGTAGACACTC+TGG | 0.648407 | 4.4:+28147718 | None:intergenic |
| GGGTGGGAGTTAGACTCATG+TGG | 0.663424 | 4.4:-28145741 | MS.gene071517:CDS |
| GGGTGTCATTTGTATCAACA+AGG | 0.663565 | 4.4:+28145694 | None:intergenic |
| AGGAGTTCAGCTTAACAAGG+AGG | 0.668823 | 4.4:-28146405 | MS.gene071517:CDS |
| CGATGTTGACAGAAGCGGCG+TGG | 0.670101 | 4.4:-28146618 | MS.gene071517:CDS |
| TTGAGCATCAATATGAGCCG+GGG | 0.674597 | 4.4:+28145674 | None:intergenic |
| TAATGAAGGGGCCTACATGG+TGG | 0.680927 | 4.4:-28146197 | MS.gene071517:intron |
| TGTTGATACAAATGACACCC+CGG | 0.681662 | 4.4:-28145691 | MS.gene071517:CDS |
| AAAGTATGATGAAGTAGTGG+TGG | 0.692926 | 4.4:-28148310 | MS.gene071517:CDS |
| TAATCACATTCCCAATCCCG+AGG | 0.693986 | 4.4:-28146714 | MS.gene071517:CDS |
| AAGTTTATAACTGATAGAGG+AGG | 0.701127 | 4.4:-28146473 | MS.gene071517:CDS |
| TTGCAATCATCTGCTCAAGG+AGG | 0.704569 | 4.4:-28145341 | MS.gene071517:CDS |
| TGACATTTCGGTAACCAACG+CGG | 0.705467 | 4.4:+28146435 | None:intergenic |
| CACGCCGCTTCTGTCAACAT+CGG | 0.714678 | 4.4:+28146619 | None:intergenic |
| AACATTTCGAAACTACATCG+AGG | 0.755001 | 4.4:-28146011 | MS.gene071517:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACATTTATTTTTTACAAAAA+AGG | - | chr4.4:28148073-28148092 | MS.gene071517:CDS | 10.0% |
| !! | AAGATCTTAATATATTGAAT+AGG | + | chr4.4:28146118-28146137 | None:intergenic | 15.0% |
| !! | AGATCTTAATATATTGAATA+GGG | + | chr4.4:28146117-28146136 | None:intergenic | 15.0% |
| !! | ATTCAATATATTAAGATCTT+AGG | - | chr4.4:28146118-28146137 | MS.gene071517:CDS | 15.0% |
| !! | TGAAAAAATCCTTATATTTA+AGG | + | chr4.4:28148042-28148061 | None:intergenic | 15.0% |
| !! | TGCAATAATAATTGAATAAA+AGG | + | chr4.4:28148406-28148425 | None:intergenic | 15.0% |
| !! | TTCTGTATATATATAATGAA+GGG | - | chr4.4:28147401-28147420 | MS.gene071517:intron | 15.0% |
| !! | TTTCTGTATATATATAATGA+AGG | - | chr4.4:28147400-28147419 | MS.gene071517:intron | 15.0% |
| !!! | AAATTTTCAAAGAAAATAGA+GGG | + | chr4.4:28146725-28146744 | None:intergenic | 15.0% |
| !!! | TAAATTTTCAAAGAAAATAG+AGG | + | chr4.4:28146726-28146745 | None:intergenic | 15.0% |
| !!! | TTATTTTTTACAAAAAAGGA+CGG | - | chr4.4:28148077-28148096 | MS.gene071517:CDS | 15.0% |
| !! | CTTATTACAGATTTATTGAA+TGG | + | chr4.4:28145260-28145279 | None:intergenic | 20.0% |
| !! | GAAATTTCTCCTTAAATATA+AGG | - | chr4.4:28148030-28148049 | MS.gene071517:CDS | 20.0% |
| !! | GGTGAAAATTATAATTGAAA+TGG | - | chr4.4:28147435-28147454 | MS.gene071517:intron | 20.0% |
| !! | TACACGTATATAAAAAATTG+TGG | + | chr4.4:28147712-28147731 | None:intergenic | 20.0% |
| !! | TCTGTATATATATAATGAAG+GGG | - | chr4.4:28147402-28147421 | MS.gene071517:intron | 20.0% |
| !!! | ATTATGTATAGTACTTTTGA+AGG | + | chr4.4:28145704-28145723 | None:intergenic | 20.0% |
| !!! | ATTGATAAGTTTGTTGAAAA+TGG | - | chr4.4:28148473-28148492 | MS.gene071517:CDS | 20.0% |
| !!! | TTTAGAATAATAAATCTGAG+TGG | + | chr4.4:28148345-28148364 | None:intergenic | 20.0% |
| ! | AATATATTGAATAGGGCATA+AGG | + | chr4.4:28146110-28146129 | None:intergenic | 25.0% |
| ! | AATTGCATTTAGACTTAGTT+TGG | + | chr4.4:28146646-28146665 | None:intergenic | 25.0% |
| ! | ACATTGTGGTTATTTAAAAG+TGG | - | chr4.4:28147809-28147828 | MS.gene071517:CDS | 25.0% |
| ! | ACTAAGTTTATAACTGATAG+AGG | - | chr4.4:28147135-28147154 | MS.gene071517:intron | 25.0% |
| ! | ACTAGTTAAACTGTTCAATT+CGG | + | chr4.4:28146176-28146195 | None:intergenic | 25.0% |
| ! | ATTTAGAAGATACCAAATAC+AGG | + | chr4.4:28146079-28146098 | None:intergenic | 25.0% |
| ! | CAAAATGTGCTTATAAATAG+AGG | + | chr4.4:28148005-28148024 | None:intergenic | 25.0% |
| ! | GTAATAAGTGTGAAATGTTA+TGG | - | chr4.4:28145272-28145291 | MS.gene071517:intron | 25.0% |
| ! | GTTATTTATTCAACAGATGA+CGG | - | chr4.4:28145750-28145769 | MS.gene071517:CDS | 25.0% |
| ! | TAAATCAGATAACCAAATCA+TGG | + | chr4.4:28148382-28148401 | None:intergenic | 25.0% |
| ! | TATTAAGATCTTAGGAACTA+CGG | - | chr4.4:28146126-28146145 | MS.gene071517:CDS | 25.0% |
| ! | TATTTATTAGAGCCATGATT+TGG | - | chr4.4:28148367-28148386 | MS.gene071517:CDS | 25.0% |
| ! | TCGTAAATATGCAAATAGAT+TGG | - | chr4.4:28145870-28145889 | MS.gene071517:intron | 25.0% |
| ! | TTAATTTAAACATGACCTAG+AGG | - | chr4.4:28146382-28146401 | MS.gene071517:CDS | 25.0% |
| ! | TTAGTTAAAACTCATGTTCA+TGG | - | chr4.4:28147314-28147333 | MS.gene071517:intron | 25.0% |
| !! | AAAGTATCAAACAATGAACA+TGG | - | chr4.4:28148189-28148208 | MS.gene071517:CDS | 25.0% |
| !! | ATTGATTTCATCGATATTTG+AGG | - | chr4.4:28147745-28147764 | MS.gene071517:CDS | 25.0% |
| !! | ATTTAGACTTAGTTTGGATT+AGG | + | chr4.4:28146640-28146659 | None:intergenic | 25.0% |
| !! | CATAAAAACTGACTTTATTG+AGG | - | chr4.4:28148153-28148172 | MS.gene071517:CDS | 25.0% |
| !! | CTCTATTTATAAGCACATTT+TGG | - | chr4.4:28148003-28148022 | MS.gene071517:CDS | 25.0% |
| !!! | TGAAATTTTTTACGAAGAGA+GGG | - | chr4.4:28145803-28145822 | MS.gene071517:intron | 25.0% |
| !!! | TTGAAATTTTTTACGAAGAG+AGG | - | chr4.4:28145802-28145821 | MS.gene071517:intron | 25.0% |
| AAAGCTAGTTGAAGTTTAGT+TGG | + | chr4.4:28147638-28147657 | None:intergenic | 30.0% | |
| AAATAACTGAACCGTAAACA+GGG | + | chr4.4:28146329-28146348 | None:intergenic | 30.0% | |
| AAATGCTAAAGCAAAAGGAT+CGG | - | chr4.4:28147567-28147586 | MS.gene071517:intron | 30.0% | |
| AACAAAGGGAATCCAATAAA+CGG | - | chr4.4:28147021-28147040 | MS.gene071517:intron | 30.0% | |
| AAGTTTATAACTGATAGAGG+AGG | - | chr4.4:28147138-28147157 | MS.gene071517:intron | 30.0% | |
| AATGGTTTAGAGAAGGAAAA+AGG | - | chr4.4:28145467-28145486 | MS.gene071517:intron | 30.0% | |
| AATGTGCTTATAAATAGAGG+CGG | + | chr4.4:28148002-28148021 | None:intergenic | 30.0% | |
| ACTTTATTGAGGCAAATCAA+GGG | - | chr4.4:28148164-28148183 | MS.gene071517:CDS | 30.0% | |
| ATAATAGTGAATGCTGGAAA+CGG | - | chr4.4:28146784-28146803 | MS.gene071517:CDS | 30.0% | |
| ATATCCTCTTGAGAATGTTA+GGG | - | chr4.4:28145490-28145509 | MS.gene071517:intron | 30.0% | |
| ATATCTTTGCAAACCAAACT+TGG | - | chr4.4:28145218-28145237 | MS.gene071517:intron | 30.0% | |
| ATATTGATGCTCAAATGTAC+AGG | - | chr4.4:28147946-28147965 | MS.gene071517:intron | 30.0% | |
| ATGAAGAATTGGACAAGATT+AGG | - | chr4.4:28145324-28145343 | MS.gene071517:CDS | 30.0% | |
| ATTGTATTGAAGGAAAATCC+AGG | - | chr4.4:28147072-28147091 | MS.gene071517:intron | 30.0% | |
| CACAATGTGTCAAAATATGT+AGG | + | chr4.4:28147797-28147816 | None:intergenic | 30.0% | |
| CATCTATAAAACATTCAACG+TGG | + | chr4.4:28147365-28147384 | None:intergenic | 30.0% | |
| CATCTTATGATTGAAACATC+TGG | - | chr4.4:28147240-28147259 | MS.gene071517:intron | 30.0% | |
| CATTATGAAACTCCACTTAA+GGG | - | chr4.4:28146000-28146019 | MS.gene071517:intron | 30.0% | |
| CTTATGAATCAGTAGAACTT+AGG | - | chr4.4:28147521-28147540 | MS.gene071517:intron | 30.0% | |
| TAACTAACTAACCATCATCA+AGG | + | chr4.4:28147293-28147312 | None:intergenic | 30.0% | |
| TATCAATTTGAGCAATGTCT+AGG | + | chr4.4:28148460-28148479 | None:intergenic | 30.0% | |
| TATGATGCTTCAATAATGGT+CGG | - | chr4.4:28145662-28145681 | MS.gene071517:intron | 30.0% | |
| TGTCTATGATGCTTCAATAA+TGG | - | chr4.4:28145658-28145677 | MS.gene071517:intron | 30.0% | |
| TGTTACTATCATTCTTTGCT+AGG | - | chr4.4:28145188-28145207 | MS.gene071517:intron | 30.0% | |
| TTAGAAAATTCAGCTGATCT+TGG | - | chr4.4:28146955-28146974 | MS.gene071517:intron | 30.0% | |
| TTGTTACATATGCCTGTATT+TGG | - | chr4.4:28146064-28146083 | MS.gene071517:CDS | 30.0% | |
| ! | AACTAAACTTCAACTAGCTT+TGG | - | chr4.4:28147637-28147656 | MS.gene071517:CDS | 30.0% |
| ! | ATTGAAGCATCATAGACAAA+TGG | + | chr4.4:28145656-28145675 | None:intergenic | 30.0% |
| ! | CAAAGATGTTGAGAATTTTG+CGG | + | chr4.4:28145144-28145163 | None:intergenic | 30.0% |
| ! | CTCATGAAATCAACTTTTGT+TGG | + | chr4.4:28145925-28145944 | None:intergenic | 30.0% |
| ! | TATAATTTTCACCACCATGT+AGG | + | chr4.4:28147428-28147447 | None:intergenic | 30.0% |
| ! | TGGATTTTCCTTCAATACAA+TGG | + | chr4.4:28147073-28147092 | None:intergenic | 30.0% |
| ! | TTTTTACAAAAAAGGACGGA+GGG | - | chr4.4:28148081-28148100 | MS.gene071517:CDS | 30.0% |
| !! | CTAAATGCAATTTTGAAGAG+AGG | - | chr4.4:28146654-28146673 | MS.gene071517:CDS | 30.0% |
| !! | CTAAGTTCTACTGATTCATA+AGG | + | chr4.4:28147523-28147542 | None:intergenic | 30.0% |
| !! | TTTATAAGCACATTTTGGAG+AGG | - | chr4.4:28148008-28148027 | MS.gene071517:CDS | 30.0% |
| !!! | AAATTTTTTACGAAGAGAGG+GGG | - | chr4.4:28145805-28145824 | MS.gene071517:intron | 30.0% |
| !!! | CTACATATTTTGACACATTG+TGG | - | chr4.4:28147795-28147814 | MS.gene071517:CDS | 30.0% |
| !!! | GAAATTTTTTACGAAGAGAG+GGG | - | chr4.4:28145804-28145823 | MS.gene071517:intron | 30.0% |
| !!! | TTTTTTACAAAAAAGGACGG+AGG | - | chr4.4:28148080-28148099 | MS.gene071517:CDS | 30.0% |
| AAAGTATGATGAAGTAGTGG+TGG | - | chr4.4:28145301-28145320 | MS.gene071517:intron | 35.0% | |
| AACAATGAACATGGACAACA+TGG | - | chr4.4:28148198-28148217 | MS.gene071517:CDS | 35.0% | |
| AACATTTCGAAACTACATCG+AGG | - | chr4.4:28147600-28147619 | MS.gene071517:intron | 35.0% | |
| AAGAATTGGACAAGATTAGG+AGG | - | chr4.4:28145327-28145346 | MS.gene071517:CDS | 35.0% | |
| ACTAACCATCATCAAGGAAA+TGG | + | chr4.4:28147287-28147306 | None:intergenic | 35.0% | |
| AGAAGATGAGAAACCAAGTT+TGG | + | chr4.4:28145234-28145253 | None:intergenic | 35.0% | |
| AGTGGAGTTTCATAATGCAA+AGG | + | chr4.4:28145997-28146016 | None:intergenic | 35.0% | |
| ATGAGTTTGTCACCGTTTAT+TGG | + | chr4.4:28147036-28147055 | None:intergenic | 35.0% | |
| ATGATTGAAACATCTGGTCA+CGG | - | chr4.4:28147246-28147265 | MS.gene071517:intron | 35.0% | |
| ATGCCAGCTTATGAGTTAAA+AGG | + | chr4.4:28146601-28146620 | None:intergenic | 35.0% | |
| ATGGTCGGTTACATAAAACT+TGG | - | chr4.4:28145677-28145696 | MS.gene071517:CDS | 35.0% | |
| ATTTGAATACAGCGCATTAC+AGG | + | chr4.4:28146691-28146710 | None:intergenic | 35.0% | |
| ATTTGAGCATCAATATGAGC+CGG | + | chr4.4:28147942-28147961 | None:intergenic | 35.0% | |
| CAAATAACTGAACCGTAAAC+AGG | + | chr4.4:28146330-28146349 | None:intergenic | 35.0% | |
| CTACAGATAATAGTGAATGC+TGG | - | chr4.4:28146778-28146797 | MS.gene071517:CDS | 35.0% | |
| CTATGGTTATTTGAGTGGTT+CGG | - | chr4.4:28146222-28146241 | MS.gene071517:intron | 35.0% | |
| CTCCTTTGTCAATGACATTT+CGG | + | chr4.4:28147191-28147210 | None:intergenic | 35.0% | |
| GAAAACCATTTCCTTGATGA+TGG | - | chr4.4:28147279-28147298 | MS.gene071517:intron | 35.0% | |
| GAAATGGTAAGAATGAAGCT+TGG | - | chr4.4:28147451-28147470 | MS.gene071517:intron | 35.0% | |
| GACTTTATTGAGGCAAATCA+AGG | - | chr4.4:28148163-28148182 | MS.gene071517:CDS | 35.0% | |
| GATATCCTCTTGAGAATGTT+AGG | - | chr4.4:28145489-28145508 | MS.gene071517:intron | 35.0% | |
| GCATTATGAAACTCCACTTA+AGG | - | chr4.4:28145999-28146018 | MS.gene071517:intron | 35.0% | |
| GGTTATCAATGGTTTAGAGA+AGG | - | chr4.4:28145460-28145479 | MS.gene071517:intron | 35.0% | |
| GGTTGTATGGTGTTTGATAT+GGG | - | chr4.4:28145587-28145606 | MS.gene071517:intron | 35.0% | |
| TAAATGAGAGAGCTTCTCAA+AGG | + | chr4.4:28146574-28146593 | None:intergenic | 35.0% | |
| TACCGAAATGTCATTGACAA+AGG | - | chr4.4:28147186-28147205 | MS.gene071517:intron | 35.0% | |
| TGCAAAGTATGATGAAGTAG+TGG | - | chr4.4:28145298-28145317 | MS.gene071517:intron | 35.0% | |
| TGGTTGTATGGTGTTTGATA+TGG | - | chr4.4:28145586-28145605 | MS.gene071517:intron | 35.0% | |
| TTTATGTTGCTGTACAGGAA+GGG | - | chr4.4:28147838-28147857 | MS.gene071517:CDS | 35.0% | |
| ! | AGGCAATATCAGAGAGTTTT+GGG | - | chr4.4:28145432-28145451 | MS.gene071517:intron | 35.0% |
| ! | TCTCCTTGATGATTTCTCTT+AGG | + | chr4.4:28145963-28145982 | None:intergenic | 35.0% |
| ! | TTTTATGTTGCTGTACAGGA+AGG | - | chr4.4:28147837-28147856 | MS.gene071517:CDS | 35.0% |
| !! | CTTCCTTTTAACTCATAAGC+TGG | - | chr4.4:28146595-28146614 | MS.gene071517:CDS | 35.0% |
| !! | GTGTTTTTATGTTGCTGTAC+AGG | - | chr4.4:28147833-28147852 | MS.gene071517:CDS | 35.0% |
| !!! | AATTTTTTACGAAGAGAGGG+GGG | - | chr4.4:28145806-28145825 | MS.gene071517:intron | 35.0% |
| AACCAACGCGGTATAAACAA+TGG | + | chr4.4:28147167-28147186 | None:intergenic | 40.0% | |
| AACTCCACTTAAGGGATTTC+AGG | - | chr4.4:28146008-28146027 | MS.gene071517:intron | 40.0% | |
| AACTTGCAATCATCTGCTCA+AGG | - | chr4.4:28148267-28148286 | MS.gene071517:CDS | 40.0% | |
| AAGATTAGGAGGCTTCAGAA+TGG | - | chr4.4:28145338-28145357 | MS.gene071517:CDS | 40.0% | |
| AATGTGCTCATGAAACAAGC+GGG | + | chr4.4:28145626-28145645 | None:intergenic | 40.0% | |
| AATTAGCAATGCCTGCACTA+TGG | - | chr4.4:28146205-28146224 | MS.gene071517:intron | 40.0% | |
| AGACTCATGTGGTGATTGTT+GGG | - | chr4.4:28147881-28147900 | MS.gene071517:intron | 40.0% | |
| ATATAATGAAGGGGCCTACA+TGG | - | chr4.4:28147411-28147430 | MS.gene071517:intron | 40.0% | |
| ATGAACATGGACAACATGGT+TGG | - | chr4.4:28148202-28148221 | MS.gene071517:CDS | 40.0% | |
| ATGGTAAGAATGAAGCTTGG+TGG | - | chr4.4:28147454-28147473 | MS.gene071517:intron | 40.0% | |
| ATTGAATAGGGCATAAGGCA+AGG | + | chr4.4:28146105-28146124 | None:intergenic | 40.0% | |
| CAAACCTGAAATCCCTTAAG+TGG | + | chr4.4:28146015-28146034 | None:intergenic | 40.0% | |
| CAAAGGAGTTCAGCTTAACA+AGG | - | chr4.4:28147203-28147222 | MS.gene071517:intron | 40.0% | |
| CAATGTGCTCATGAAACAAG+CGG | + | chr4.4:28145627-28145646 | None:intergenic | 40.0% | |
| CACTCAAATAACCATAGTGC+AGG | + | chr4.4:28146219-28146238 | None:intergenic | 40.0% | |
| CAGTTTAACCATGACTCAGA+CGG | - | chr4.4:28146278-28146297 | MS.gene071517:intron | 40.0% | |
| CATAAGCTGGCATAAAGCAT+AGG | - | chr4.4:28146608-28146627 | MS.gene071517:CDS | 40.0% | |
| CCATGAATTGACCCTGTTTA+CGG | - | chr4.4:28146315-28146334 | MS.gene071517:intron | 40.0% | |
| CCTCGAAATGCTAAAGCAAA+AGG | - | chr4.4:28147562-28147581 | MS.gene071517:intron | 40.0% | |
| CTGCACTATGGTTATTTGAG+TGG | - | chr4.4:28146217-28146236 | MS.gene071517:intron | 40.0% | |
| GCAAGTTCACAGCAATGTTT+GGG | + | chr4.4:28148254-28148273 | None:intergenic | 40.0% | |
| GCACCTAAGAGAAATCATCA+AGG | - | chr4.4:28145957-28145976 | MS.gene071517:intron | 40.0% | |
| GGAACTACGGCATTTATGAT+AGG | - | chr4.4:28146139-28146158 | MS.gene071517:CDS | 40.0% | |
| TACGATGTCTTAGACAAGCT+TGG | - | chr4.4:28146826-28146845 | MS.gene071517:CDS | 40.0% | |
| TAGACTCATGTGGTGATTGT+TGG | - | chr4.4:28147880-28147899 | MS.gene071517:intron | 40.0% | |
| TGAACATGGACAACATGGTT+GGG | - | chr4.4:28148203-28148222 | MS.gene071517:CDS | 40.0% | |
| TGACAAACTCATTGCTCTCA+TGG | - | chr4.4:28147044-28147063 | MS.gene071517:intron | 40.0% | |
| TGATTAGGAAACATGCCATC+AGG | + | chr4.4:28146883-28146902 | None:intergenic | 40.0% | |
| TGCAAGTTCACAGCAATGTT+TGG | + | chr4.4:28148255-28148274 | None:intergenic | 40.0% | |
| TGCTTATAAATAGAGGCGGA+GGG | + | chr4.4:28147998-28148017 | None:intergenic | 40.0% | |
| TGCTTTAGCATTTCGAGGTT+CGG | + | chr4.4:28147560-28147579 | None:intergenic | 40.0% | |
| TGTTGATACAAATGACACCC+CGG | - | chr4.4:28147920-28147939 | MS.gene071517:intron | 40.0% | |
| TTCAAACCATTGCGTGTGTA+AGG | + | chr4.4:28145787-28145806 | None:intergenic | 40.0% | |
| TTGAATAGGGCATAAGGCAA+GGG | + | chr4.4:28146104-28146123 | None:intergenic | 40.0% | |
| TTTAAGCAGAGTAGACACTC+TGG | + | chr4.4:28145896-28145915 | None:intergenic | 40.0% | |
| TTTCCTTCTCTATGAGTCAG+TGG | + | chr4.4:28146470-28146489 | None:intergenic | 40.0% | |
| TTTGAGCATCAATATGAGCC+GGG | + | chr4.4:28147941-28147960 | None:intergenic | 40.0% | |
| ! | CCTTTTGCTTTAGCATTTCG+AGG | + | chr4.4:28147565-28147584 | None:intergenic | 40.0% |
| ! | CTGCTTTAAACCACTAGAAC+CGG | + | chr4.4:28146261-28146280 | None:intergenic | 40.0% |
| ! | GAAGCATCATAGACAAATGG+AGG | + | chr4.4:28145653-28145672 | None:intergenic | 40.0% |
| ! | GAGGCAATATCAGAGAGTTT+TGG | - | chr4.4:28145431-28145450 | MS.gene071517:intron | 40.0% |
| ! | GGCAATATCAGAGAGTTTTG+GGG | - | chr4.4:28145433-28145452 | MS.gene071517:intron | 40.0% |
| ! | TGAGAATTTTGCGGAAGTAG+AGG | + | chr4.4:28145135-28145154 | None:intergenic | 40.0% |
| ! | TGCAGTTTTCTCAAAGCAAG+TGG | - | chr4.4:28148422-28148441 | MS.gene071517:CDS | 40.0% |
| ! | TGCTTTTCTTGTCATTGCCA+TGG | + | chr4.4:28146932-28146951 | None:intergenic | 40.0% |
| !! | AGTAGTGGTGGATGAAGAAT+TGG | - | chr4.4:28145313-28145332 | MS.gene071517:CDS | 40.0% |
| !! | GGGTGTCATTTGTATCAACA+AGG | + | chr4.4:28147920-28147939 | None:intergenic | 40.0% |
| AACATGGTTGGGTACACATG+AGG | - | chr4.4:28148214-28148233 | MS.gene071517:CDS | 45.0% | |
| AATTTAGACCCTGTGACTCG+AGG | + | chr4.4:28145533-28145552 | None:intergenic | 45.0% | |
| ACATGACCTAGAGGTCTCAT+TGG | - | chr4.4:28146391-28146410 | MS.gene071517:CDS | 45.0% | |
| ACTCTCTGATATTGCCTCCA+CGG | + | chr4.4:28145429-28145448 | None:intergenic | 45.0% | |
| AGGAGTTCAGCTTAACAAGG+AGG | - | chr4.4:28147206-28147225 | MS.gene071517:intron | 45.0% | |
| ATCCAACCAATGAGACCTCT+AGG | + | chr4.4:28146400-28146419 | None:intergenic | 45.0% | |
| ATTTAGACCCTGTGACTCGA+GGG | + | chr4.4:28145532-28145551 | None:intergenic | 45.0% | |
| CACCATTGTTTATACCGCGT+TGG | - | chr4.4:28147162-28147181 | MS.gene071517:intron | 45.0% | |
| CATGACTCAGACGGTTCAAT+CGG | - | chr4.4:28146287-28146306 | MS.gene071517:intron | 45.0% | |
| CATGGCTGCCATTGTATTGA+AGG | - | chr4.4:28147062-28147081 | MS.gene071517:intron | 45.0% | |
| CATTTGCCTTACACACGCAA+TGG | - | chr4.4:28145778-28145797 | MS.gene071517:intron | 45.0% | |
| CCGTAAACAGGGTCAATTCA+TGG | + | chr4.4:28146318-28146337 | None:intergenic | 45.0% | |
| GACACCCTAACATTCTCAAG+AGG | + | chr4.4:28145497-28145516 | None:intergenic | 45.0% | |
| GATACCGATGTTGACAGAAG+CGG | - | chr4.4:28146988-28147007 | MS.gene071517:intron | 45.0% | |
| GGAGTTCAGCTTAACAAGGA+GGG | - | chr4.4:28147207-28147226 | MS.gene071517:intron | 45.0% | |
| GGATGTTAGAGGAGTTGCAT+TGG | - | chr4.4:28145364-28145383 | MS.gene071517:CDS | 45.0% | |
| GTGATTGTTGGGTGAGTGAA+GGG | - | chr4.4:28147892-28147911 | MS.gene071517:intron | 45.0% | |
| GTGCTTATAAATAGAGGCGG+AGG | + | chr4.4:28147999-28148018 | None:intergenic | 45.0% | |
| GTTAGAGGAGTTGCATTGGA+AGG | - | chr4.4:28145368-28145387 | MS.gene071517:CDS | 45.0% | |
| TAATCACATTCCCAATCCCG+AGG | - | chr4.4:28146897-28146916 | MS.gene071517:intron | 45.0% | |
| TACAGGAAGGGAGGCTTAAA+GGG | - | chr4.4:28147850-28147869 | MS.gene071517:intron | 45.0% | |
| TAGGAGGCTTCAGAATGGTT+CGG | - | chr4.4:28145343-28145362 | MS.gene071517:CDS | 45.0% | |
| TCAAGGAGGTTGCTTGTCAA+TGG | - | chr4.4:28148284-28148303 | MS.gene071517:CDS | 45.0% | |
| TCGGGATTGGGAATGTGATT+AGG | + | chr4.4:28146898-28146917 | None:intergenic | 45.0% | |
| TCGGTTACTATGGTTGATCC+TGG | + | chr4.4:28147093-28147112 | None:intergenic | 45.0% | |
| TCTCTGCATCTCAAACCTGA+TGG | - | chr4.4:28146865-28146884 | MS.gene071517:intron | 45.0% | |
| TGACATTTCGGTAACCAACG+CGG | + | chr4.4:28147179-28147198 | None:intergenic | 45.0% | |
| TGCTAAAGCAAAAGGATCGG+AGG | - | chr4.4:28147570-28147589 | MS.gene071517:intron | 45.0% | |
| TTGAGCATCAATATGAGCCG+GGG | + | chr4.4:28147940-28147959 | None:intergenic | 45.0% | |
| TTGCAATCATCTGCTCAAGG+AGG | - | chr4.4:28148270-28148289 | MS.gene071517:CDS | 45.0% | |
| ! | AAGCTTGGTGGATCAGATGA+AGG | - | chr4.4:28147466-28147485 | MS.gene071517:intron | 45.0% |
| ! | AGCTTGGTGGATCAGATGAA+GGG | - | chr4.4:28147467-28147486 | MS.gene071517:intron | 45.0% |
| ! | CAGAATGGTTCGGATGTTAG+AGG | - | chr4.4:28145353-28145372 | MS.gene071517:CDS | 45.0% |
| ! | GAGAATGTTAGGGTGTCTCT+TGG | - | chr4.4:28145500-28145519 | MS.gene071517:intron | 45.0% |
| ! | GAGCGATCACAGTTTCGTTT+TGG | - | chr4.4:28146349-28146368 | MS.gene071517:CDS | 45.0% |
| ! | GCAATTTTGTCCTCGGGATT+GGG | + | chr4.4:28146910-28146929 | None:intergenic | 45.0% |
| ! | GGTCTCATTGGTTGGATGTT+CGG | - | chr4.4:28146403-28146422 | MS.gene071517:CDS | 45.0% |
| ! | GTGCAGGCATTGCTAATTCA+TGG | + | chr4.4:28146203-28146222 | None:intergenic | 45.0% |
| ! | TGCCATGGCAATTTTGTCCT+CGG | + | chr4.4:28146917-28146936 | None:intergenic | 45.0% |
| ! | TTGAGTGTTGCAGTGTTTGC+CGG | - | chr4.4:28145551-28145570 | MS.gene071517:intron | 45.0% |
| ! | TTTGAGATGCAGAGAGCCAA+AGG | + | chr4.4:28146860-28146879 | None:intergenic | 45.0% |
| !! | AAGCTTGGTGCAGATACCTT+TGG | - | chr4.4:28146841-28146860 | MS.gene071517:intron | 45.0% |
| !! | TCTCCACTGACTCATAGAGA+AGG | - | chr4.4:28146464-28146483 | MS.gene071517:CDS | 45.0% |
| !! | TGTACGAGCATCGGTTACTA+TGG | + | chr4.4:28147103-28147122 | None:intergenic | 45.0% |
| !! | TTTGGGGAGTGGGTTATCAA+TGG | - | chr4.4:28145449-28145468 | MS.gene071517:intron | 45.0% |
| !!! | ATCAGAGAGTTTTGGGGAGT+GGG | - | chr4.4:28145439-28145458 | MS.gene071517:intron | 45.0% |
| !!! | TATCAGAGAGTTTTGGGGAG+TGG | - | chr4.4:28145438-28145457 | MS.gene071517:intron | 45.0% |
| AATGCTGGAAACGGTTCAGG+AGG | - | chr4.4:28146793-28146812 | MS.gene071517:CDS | 50.0% | |
| ATGTTGCTGTACAGGAAGGG+AGG | - | chr4.4:28147841-28147860 | MS.gene071517:CDS | 50.0% | |
| CGACATGCTTGTACGAGCAT+CGG | + | chr4.4:28147112-28147131 | None:intergenic | 50.0% | |
| CGATTGAACCGTCTGAGTCA+TGG | + | chr4.4:28146289-28146308 | None:intergenic | 50.0% | |
| GACCTAGAGGTCTCATTGGT+TGG | - | chr4.4:28146395-28146414 | MS.gene071517:CDS | 50.0% | |
| GGTGATTGTTGGGTGAGTGA+AGG | - | chr4.4:28147891-28147910 | MS.gene071517:intron | 50.0% | |
| GGTGGATCAGATGAAGGGAT+TGG | - | chr4.4:28147472-28147491 | MS.gene071517:intron | 50.0% | |
| GTACAGGAAGGGAGGCTTAA+AGG | - | chr4.4:28147849-28147868 | MS.gene071517:intron | 50.0% | |
| GTGAATGCTGGAAACGGTTC+AGG | - | chr4.4:28146790-28146809 | MS.gene071517:CDS | 50.0% | |
| GTTGCATTGGAAGGCGAGAA+AGG | - | chr4.4:28145377-28145396 | MS.gene071517:CDS | 50.0% | |
| TAATGAAGGGGCCTACATGG+TGG | - | chr4.4:28147414-28147433 | MS.gene071517:intron | 50.0% | |
| TCCCGAGGACAAAATTGCCA+TGG | - | chr4.4:28146912-28146931 | MS.gene071517:intron | 50.0% | |
| ! | CACTTTCGTTCCGGTTCTAG+TGG | - | chr4.4:28146248-28146267 | MS.gene071517:intron | 50.0% |
| ! | GCCATGGCAATTTTGTCCTC+GGG | + | chr4.4:28146916-28146935 | None:intergenic | 50.0% |
| ! | GGCAATTTTGTCCTCGGGAT+TGG | + | chr4.4:28146911-28146930 | None:intergenic | 50.0% |
| !! | AGCGGCGTGGTTGATAACAA+AGG | - | chr4.4:28147006-28147025 | MS.gene071517:intron | 50.0% |
| !! | GCGGCGTGGTTGATAACAAA+GGG | - | chr4.4:28147007-28147026 | MS.gene071517:intron | 50.0% |
| !! | TCTTGCTCGTGCTGGTTGTA+TGG | - | chr4.4:28145574-28145593 | MS.gene071517:intron | 50.0% |
| ACAACCAGCACGAGCAAGAC+CGG | + | chr4.4:28145573-28145592 | None:intergenic | 55.0% | |
| AGGAAGGGAGGCTTAAAGGG+TGG | - | chr4.4:28147853-28147872 | MS.gene071517:intron | 55.0% | |
| CACGCCGCTTCTGTCAACAT+CGG | + | chr4.4:28146995-28147014 | None:intergenic | 55.0% | |
| GGAAGGGAGGCTTAAAGGGT+GGG | - | chr4.4:28147854-28147873 | MS.gene071517:intron | 55.0% | |
| GGGTGGGAGTTAGACTCATG+TGG | - | chr4.4:28147870-28147889 | MS.gene071517:intron | 55.0% | |
| GTTCGGTCGCACTTTCGTTC+CGG | - | chr4.4:28146239-28146258 | MS.gene071517:intron | 55.0% | |
| TCTGATATTGCCTCCACGGC+AGG | + | chr4.4:28145425-28145444 | None:intergenic | 55.0% | |
| CGATGTTGACAGAAGCGGCG+TGG | - | chr4.4:28146993-28147012 | MS.gene071517:intron | 60.0% | |
| GATATTGCCTCCACGGCAGG+AGG | + | chr4.4:28145422-28145441 | None:intergenic | 60.0% | |
| TTTGCCGGTCTTGCTCGTGC+TGG | - | chr4.4:28145566-28145585 | MS.gene071517:intron | 60.0% | |
| CCTCCACGGCAGGAGGAGTA+AGG | + | chr4.4:28145415-28145434 | None:intergenic | 65.0% | |
| CCTTACTCCTCCTGCCGTGG+AGG | - | chr4.4:28145412-28145431 | MS.gene071517:CDS | 65.0% | |
| CGACCTTACTCCTCCTGCCG+TGG | - | chr4.4:28145409-28145428 | MS.gene071517:CDS | 65.0% | |
| GACGCGACCCTCGAGTCACA+GGG | - | chr4.4:28145522-28145541 | MS.gene071517:intron | 65.0% | |
| ! | AGGGGGGCTGACTTCACTGG+AGG | - | chr4.4:28145822-28145841 | MS.gene071517:intron | 65.0% |
| ! | GAGAGGGGGGCTGACTTCAC+TGG | - | chr4.4:28145819-28145838 | MS.gene071517:intron | 65.0% |
| GGACGCGACCCTCGAGTCAC+AGG | - | chr4.4:28145521-28145540 | MS.gene071517:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 28145125 | 28148508 | 28145125 | ID=MS.gene071517 |
| chr4.4 | mRNA | 28145125 | 28148508 | 28145125 | ID=MS.gene071517.t1;Parent=MS.gene071517 |
| chr4.4 | exon | 28147954 | 28148508 | 28147954 | ID=MS.gene071517.t1.exon1;Parent=MS.gene071517.t1 |
| chr4.4 | CDS | 28147954 | 28148508 | 28147954 | ID=cds.MS.gene071517.t1;Parent=MS.gene071517.t1 |
| chr4.4 | exon | 28147604 | 28147867 | 28147604 | ID=MS.gene071517.t1.exon2;Parent=MS.gene071517.t1 |
| chr4.4 | CDS | 28147604 | 28147867 | 28147604 | ID=cds.MS.gene071517.t1;Parent=MS.gene071517.t1 |
| chr4.4 | exon | 28146333 | 28146849 | 28146333 | ID=MS.gene071517.t1.exon3;Parent=MS.gene071517.t1 |
| chr4.4 | CDS | 28146333 | 28146849 | 28146333 | ID=cds.MS.gene071517.t1;Parent=MS.gene071517.t1 |
| chr4.4 | exon | 28146012 | 28146211 | 28146012 | ID=MS.gene071517.t1.exon4;Parent=MS.gene071517.t1 |
| chr4.4 | CDS | 28146012 | 28146211 | 28146012 | ID=cds.MS.gene071517.t1;Parent=MS.gene071517.t1 |
| chr4.4 | exon | 28145666 | 28145778 | 28145666 | ID=MS.gene071517.t1.exon5;Parent=MS.gene071517.t1 |
| chr4.4 | CDS | 28145666 | 28145778 | 28145666 | ID=cds.MS.gene071517.t1;Parent=MS.gene071517.t1 |
| chr4.4 | exon | 28145308 | 28145448 | 28145308 | ID=MS.gene071517.t1.exon6;Parent=MS.gene071517.t1 |
| chr4.4 | CDS | 28145308 | 28145448 | 28145308 | ID=cds.MS.gene071517.t1;Parent=MS.gene071517.t1 |
| chr4.4 | exon | 28145125 | 28145206 | 28145125 | ID=MS.gene071517.t1.exon7;Parent=MS.gene071517.t1 |
| chr4.4 | CDS | 28145125 | 28145206 | 28145125 | ID=cds.MS.gene071517.t1;Parent=MS.gene071517.t1 |
| Gene Sequence |
| Protein sequence |
