AlfalfaGEDB | MS.gene071662

M. sativa cultivar XinJiangDaYe / MS.gene071662

KEGG: K02692
GO: GO:0005575 GO:0008150 GO:0008152 GO:0009521 GO:0009522 GO:0009538 GO:0009987 GO:0015979 GO:0032991 GO:0044237 GO:0098796
PFAM: PF02531.19

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071662.t1	TKY51141.1	78.4	208	34	1	1	197	1	208	3.90E-85	324.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071662.t1	P32869	75.0	208	40	2	1	197	1	207	3.4e-82	305.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071662.t1	T2DMR3	78.8	208	32	2	1	197	1	207	4.7e-85	323.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049217	MS.gene071662	0.80188	7.31E-49	-1.69E-46
MS.gene049232	MS.gene071662	0.810407	1.17E-50	-1.69E-46
MS.gene049320	MS.gene071662	0.820891	5.40E-53	-1.69E-46
MS.gene050581	MS.gene071662	0.816617	5.04E-52	-1.69E-46
MS.gene050986	MS.gene071662	0.810455	1.14E-50	-1.69E-46
MS.gene051509	MS.gene071662	0.807699	4.45E-50	-1.69E-46
MS.gene051551	MS.gene071662	0.815557	8.70E-52	-1.69E-46
MS.gene051564	MS.gene071662	0.803497	3.39E-49	-1.69E-46
MS.gene052271	MS.gene071662	0.850047	2.19E-60	-1.69E-46
MS.gene053018	MS.gene071662	0.814568	1.44E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071662.t1	MTR_1g104630	79.899	199	32	3	1	197	1	193	1.65e-109	311
MS.gene071662.t1	MTR_5g006130	70.833	216	37	3	1	197	1	209	1.18e-102	295

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071662.t1	AT1G03130	75.145	173	30	2	38	197	32	204	2.77e-88	258
MS.gene071662.t1	AT4G02770	73.864	176	30	2	38	197	33	208	5.39e-87	255

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Find 74 sgRNAs with CRISPR-Local

Find 84 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCACCTCACAATGGCCA+CGG	0.601200	1.2:-77718496	None:intergenic
AAAGAACAATGTTTGGCTCT+TGG	0.389124	1.2:-77718090	MS.gene071662:CDS
AAAGTGAACCCGGGTCGCCA+AGG	0.500800	1.2:-77717964	MS.gene071662:CDS
AACCCGGGTCGCCAAGGGGT+TGG	0.516971	1.2:-77717958	MS.gene071662:CDS
AAGACTGAGAGGGTTTGGAT+TGG	0.585730	1.2:+77718377	None:intergenic
AAGGGGTTGGTCAGAACTTT+AGG	0.293589	1.2:-77717945	MS.gene071662:CDS
AAGTATTGAACTTCCCCATT+GGG	0.462594	1.2:+77718015	None:intergenic
AAGTGAACCCGGGTCGCCAA+GGG	0.549528	1.2:-77717963	MS.gene071662:CDS
AATGTGGGTGATTGTTTCCA+TGG	0.524862	1.2:+77718408	None:intergenic
AGAGAGAGGAGGGGTGAAGA+GGG	0.442080	1.2:+77718461	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAAGAATGTTAGTCCTATAG+AGG	-	chr1.2:77718448-77718467	MS.gene071662:CDS	30.0%
AGCAAGGAAAGAACAATGTT+TGG	-	chr1.2:77718265-77718284	MS.gene071662:intron	35.0%
AGTTCAATACTTGCATCCTA+AGG	-	chr1.2:77718358-77718377	MS.gene071662:CDS	35.0%
CAAAACAACAACTGTTACTG+AGG	-	chr1.2:77718031-77718050	MS.gene071662:CDS	35.0%
CTTGCTAACTTGAGAAGATT+GGG	+	chr1.2:77718251-77718270	None:intergenic	35.0%
TGGGAAACACTCTATAGAAT+TGG	+	chr1.2:77718331-77718350	None:intergenic	35.0%
AATGTGGGTGATTGTTTCCA+TGG	+	chr1.2:77717957-77717976	None:intergenic	40.0%
AGAGATACGGTCATTAGGTT+TGG	+	chr1.2:77717931-77717950	None:intergenic	40.0%
AGTACTGCCACTGAAAATTG+GGG	+	chr1.2:77718114-77718133	None:intergenic	40.0%
ATGTTTGTGTCTTACTCAGG+TGG	+	chr1.2:77718086-77718105	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	77717879	77718505	77717879	ID=MS.gene071662
chr1.2	mRNA	77717879	77718505	77717879	ID=MS.gene071662.t1;Parent=MS.gene071662
chr1.2	exon	77718294	77718505	77718294	ID=MS.gene071662.t1.exon1;Parent=MS.gene071662.t1
chr1.2	CDS	77718294	77718505	77718294	ID=cds.MS.gene071662.t1;Parent=MS.gene071662.t1
chr1.2	exon	77717879	77718260	77717879	ID=MS.gene071662.t1.exon2;Parent=MS.gene071662.t1
chr1.2	CDS	77717879	77718260	77717879	ID=cds.MS.gene071662.t1;Parent=MS.gene071662.t1

Gene Sequence

>MS.gene071662

ATGGCCACGGCAACTCAAACCTCCCTCTTCACCCCTCCTCTCTCTGGTCCCAAACCTAATGACCGTATCTCTGTACCATGGAAACAATCACCCACATTGTCCTTCACCAATCCAAACCCTCTCAGTCTTAGGCTCACAATTTCAAGAAACATCAAAACAACAACTGTTACTGAGGAAGCAACAGAGGCACCAATTGGCTTCACCCCACCTGAGTAAGACACAAACATTCCCTCCCCAATTTTCAGTGGCAGTACTGGAGGCCTTTTACGCAAAGCCCAAGTTGAGGAATTTTATGTAATCACATGGGATTCACCAAAAGAACAAATCTTTGAAATGCCTACTGGTGGTGCAGCCATCATGAGGGAAGGTCCCAATCTTCTCAAGTTAGCAAGGAAAGAACAATGTTTGGCTCTTGGAACTACATTGAGGTCAAAGTACAAGATCAAGTACCAATTCTATAGAGTGTTTCCCAATGGGGAAGTTCAATACTTGCATCCTAAGGATGGTGTGTACCCAGAGAAAGTGAACCCGGGTCGCCAAGGGGTTGGTCAGAACTTTAGGTCTATTGGTAAGAATGTTAGTCCTATAGAGGTTAAGTTCAGTGGCAAGCAAGTGCATGAATTGTGA

Protein sequence

>MS.gene071662.t1

MATATQTSLFTPPLSGPKPNDRISVPWKQSPTLSFTNPNPLSLRLTISRNIKTTTVTEEATEAPIGFTPPDGSTGGLLRKAQVEEFYVITWDSPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTTLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGQNFRSIGKNVSPIEVKFSGKQVHEL