AlfalfaGEDB | MS.gene071677

M. sativa cultivar XinJiangDaYe / MS.gene071677

KEGG: -
GO: -
PFAM: PF18087.4 PF18578.4

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071677.t1	XP_003590938.1	95.9	319	12	1	37	354	131	449	8.50E-168	599.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071677.t1	Q9SR19	57.0	328	123	7	37	354	130	449	1.0e-89	331.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071677.t1	G7I682	95.9	319	12	1	37	354	131	449	6.2e-168	599.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050060	MS.gene071677	0.800754	1.24E-48	-1.69E-46
MS.gene050404	MS.gene071677	0.850391	1.75E-60	-1.69E-46
MS.gene050406	MS.gene071677	0.851086	1.12E-60	-1.69E-46
MS.gene050529	MS.gene071677	0.804206	2.41E-49	-1.69E-46
MS.gene050812	MS.gene071677	0.839683	1.37E-57	-1.69E-46
MS.gene05101	MS.gene071677	0.802976	4.35E-49	-1.69E-46
MS.gene051171	MS.gene071677	0.910348	2.07E-82	-1.69E-46
MS.gene051242	MS.gene071677	0.860651	1.78E-63	-1.69E-46
MS.gene051244	MS.gene071677	0.867587	1.23E-65	-1.69E-46
MS.gene051471	MS.gene071677	0.808676	2.75E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071677.t1	MTR_1g079870	95.925	319	12	1	37	354	131	449	0.0	593

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071677.t1	AT3G04550	55.000	360	139	8	10	354	98	449	1.44e-116	345
MS.gene071677.t1	AT5G28500	56.347	323	128	7	37	354	120	434	1.11e-109	327
MS.gene071677.t1	AT5G28500	56.338	142	61	1	37	177	120	261	2.84e-50	169

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Find 84 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATGATGGTAATGATGT+TGG	0.508132	1.4:+65015289	MS.gene071677:CDS
AAAGCAGTTCTTGGATCAGA+AGG	0.525966	1.4:-65014800	None:intergenic
AAATAAGCAAGACAATCTCC+CGG	0.574397	1.4:-65014746	None:intergenic
AAGGATTTCCCGAGTAGACG+CGG	0.620983	1.4:+65014689	MS.gene071677:CDS
AATAAGCAAGACAATCTCCC+GGG	0.581163	1.4:-65014745	None:intergenic
AATGGGTGGTGTTACCGGCT+TGG	0.460749	1.4:+65015104	MS.gene071677:CDS
AATGTGGTGAGATTGAAGAT+TGG	0.584496	1.4:+65014941	MS.gene071677:CDS
ACAACTCAAAATATCTTATG+TGG	0.492816	1.4:-65013899	None:intergenic
AGATCTAGCCCGTTCGATAA+AGG	0.374992	1.4:+65014670	MS.gene071677:CDS
AGCACCTTCTGAGATTAAAA+AGG	0.372534	1.4:+65015039	MS.gene071677:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATATGTTGAGTGAAGAAGTT+TGG	+	chr1.4:65015413-65015432	MS.gene071677:CDS	30.0%
ATTAAAAAGGAAGGTGAGTT+TGG	+	chr1.4:65015052-65015071	MS.gene071677:CDS	30.0%
ATTCTCTCTTACTTTGATAG+CGG	+	chr1.4:65014545-65014564	MS.gene071677:CDS	30.0%
GGGAAACAAAAATCTAAAGA+AGG	+	chr1.4:65013939-65013958	MS.gene071677:CDS	30.0%
TATGTTGAGTGAAGAAGTTT+GGG	+	chr1.4:65015414-65015433	MS.gene071677:CDS	30.0%
TCTTGTGAAGTATGCAAATT+AGG	-	chr1.4:65014091-65014110	None:intergenic	30.0%
TGAAGTGAAGATTGAAGAAT+GGG	-	chr1.4:65014065-65014084	None:intergenic	30.0%
AAATAAGCAAGACAATCTCC+CGG	-	chr1.4:65014749-65014768	None:intergenic	35.0%
AATGTGGTGAGATTGAAGAT+TGG	+	chr1.4:65014941-65014960	MS.gene071677:CDS	35.0%
ATGGGTGTTAATGAGTGTTT+AGG	+	chr1.4:65015346-65015365	MS.gene071677:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	65013882	65015441	65013882	ID=MS.gene071677
chr1.4	mRNA	65013882	65015441	65013882	ID=MS.gene071677.t1;Parent=MS.gene071677
chr1.4	exon	65013882	65013989	65013882	ID=MS.gene071677.t1.exon1;Parent=MS.gene071677.t1
chr1.4	CDS	65013882	65013989	65013882	ID=cds.MS.gene071677.t1;Parent=MS.gene071677.t1
chr1.4	exon	65014485	65015441	65014485	ID=MS.gene071677.t1.exon2;Parent=MS.gene071677.t1
chr1.4	CDS	65014485	65015441	65014485	ID=cds.MS.gene071677.t1;Parent=MS.gene071677.t1

Gene Sequence

>MS.gene071677

ATGAGGTTGAATATCGTCCACATAAGATATTTTGAGTTGTTTTCGGTTATCTCTGGAGGGAAACAAAAATCTAAAGAAGGTGAAACAAGTGAACACTCCTCTTTCAGTGTAAAATCTAACAAACTGATAACATCTATCTATCTATCAGATAAGGCACTCAACACAAGTACTACTCCATAACCCATTCTTCAATCTTCACTTCACTTCCTAATTTGCATACTTCACAAGATGCTTTCACCATGTATCAGTTCTGTAAACACTCTAAATCTAAAATTTCTCAATATCTCACCCTCTTCCTCCAATCTCAACCGTTCTTATTACCGCCTTAAATCAATCTCAGCCGTCCTCAACAACCCTTCATCACACAGCAAAAAACAACGACAAGTACAACAACCACAGAAACAACTATACCAACCCTTCCGACCACCACCAACACCTCTCCCATCAAAATACGACAACCTTGACATCCCAGGACGCATCGACATCCTTGCCAACCGTCTCGGTGCATGGCACGAATACGCTCCTCTCATCACTTCCCTCCTCCGAGAAGGCTTTTCACCTCCCACCATTGAAGAAACCACTGGCATCACCGGCGTTGAACAGAATCGTATCATAGTCGCAACTCAAGTTCGTGACACTCTTGTCGCCAACACGGATGAAGAGATTCTCTCTTACTTTGATAGCGGTGGTGCTGAAGTTTTATACGAAATTCGTCTCCTCTCCACTTCGCAACGTGCTGCTGCAGCGCGTTTCATTGTGGAGAAGAGATATGATGGAAAAGGTGCTCAAGATCTAGCCCGTTCGATAAAGGATTTCCCGAGTAGACGCGGTGAAAAAAATTGGGAGAGTTTTGATTATCATCTCCCGGGAGATTGTCTTGCTTATTTGTATTACAGACAAAGTAAGGAACATAAGAATCCTTCTGATCCAAGAACTGCTTTTCTTGAACAAGCGTTGAGTGCTGTAGAGTCTGATAAAGCTAGAAAAGTGGTTTTGGAGGAGTTGAGTGGGAAGGCTGAAGAGGAGGAGGTTGAAGATGTTGTGTTAAAAGTGCCTGTTAATGTGGTGAGATTGAAGATTGGTGAAGTAGCTGAGGCGACCTCGGTGGTTGTTTTGCCGGTGTGTAAAGCTGAGGAAGGAGAAAGGGTGATTATGGAAGCACCTTCTGAGATTAAAAAGGAAGGTGAGTTTGGTATTGTGGTGGCGGAGAAAGGGTGGGAGAAATGGGTGGTGTTACCGGCTTGGGGACCGGTGGTTAATTTAGGGAAAGGCGTTGTTGTGTCGTTTTTGGATGCGAGAGTTTTGCCATGGAAGGCTAATAATAGGTGGCGTAAGGAAGAGCCTATTTTAGTGGTTGCTGATAGGAGTAAGAGGGAGGTGGAGAATGATGATGGGTTATATTTAGTAAAAGATGATGGTAATGATGTTGGTTTAAAGGTTCAAAGGGGTTCGGTTTTGAAGGAAATGGGTGTTAATGAGTGTTTAGGGAATGTAGTTATTGTTGTTAGGCCACCTACTGAAAATGATGGTGATATGTTGAGTGAAGAAGTTTGGGACTGA

Protein sequence

>MS.gene071677.t1

MRLNIVHIRYFELFSVISGGKQKSKEGETSEHSSFSNRIIVATQVRDTLVANTDEEILSYFDSGGAEVLYEIRLLSTSQRAAAARFIVEKRYDGKGAQDLARSIKDFPSRRGEKNWESFDYHLPGDCLAYLYYRQSKEHKNPSDPRTAFLEQALSAVESDKARKVVLEELSGKAEEEEVEDVVLKVPVNVVRLKIGEVAEATSVVVLPVCKAEEGERVIMEAPSEIKKEGEFGIVVAEKGWEKWVVLPAWGPVVNLGKGVVVSFLDARVLPWKANNRWRKEEPILVVADRSKREVENDDGLYLVKDDGNDVGLKVQRGSVLKEMGVNECLGNVVIVVRPPTENDGDMLSEEVWD