Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071677.t1 | XP_003590938.1 | 95.9 | 319 | 12 | 1 | 37 | 354 | 131 | 449 | 8.50E-168 | 599.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071677.t1 | Q9SR19 | 57.0 | 328 | 123 | 7 | 37 | 354 | 130 | 449 | 1.0e-89 | 331.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071677.t1 | G7I682 | 95.9 | 319 | 12 | 1 | 37 | 354 | 131 | 449 | 6.2e-168 | 599.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050060 | MS.gene071677 | 0.800754 | 1.24E-48 | -1.69E-46 |
| MS.gene050404 | MS.gene071677 | 0.850391 | 1.75E-60 | -1.69E-46 |
| MS.gene050406 | MS.gene071677 | 0.851086 | 1.12E-60 | -1.69E-46 |
| MS.gene050529 | MS.gene071677 | 0.804206 | 2.41E-49 | -1.69E-46 |
| MS.gene050812 | MS.gene071677 | 0.839683 | 1.37E-57 | -1.69E-46 |
| MS.gene05101 | MS.gene071677 | 0.802976 | 4.35E-49 | -1.69E-46 |
| MS.gene051171 | MS.gene071677 | 0.910348 | 2.07E-82 | -1.69E-46 |
| MS.gene051242 | MS.gene071677 | 0.860651 | 1.78E-63 | -1.69E-46 |
| MS.gene051244 | MS.gene071677 | 0.867587 | 1.23E-65 | -1.69E-46 |
| MS.gene051471 | MS.gene071677 | 0.808676 | 2.75E-50 | -1.69E-46 |
| MS.gene051582 | MS.gene071677 | 0.81319 | 2.90E-51 | -1.69E-46 |
| MS.gene052078 | MS.gene071677 | 0.842574 | 2.38E-58 | -1.69E-46 |
| MS.gene052310 | MS.gene071677 | 0.812389 | 4.35E-51 | -1.69E-46 |
| MS.gene052340 | MS.gene071677 | 0.827218 | 1.77E-54 | -1.69E-46 |
| MS.gene053330 | MS.gene071677 | 0.832002 | 1.21E-55 | -1.69E-46 |
| MS.gene053971 | MS.gene071677 | 0.827736 | 1.33E-54 | -1.69E-46 |
| MS.gene054327 | MS.gene071677 | 0.801375 | 9.27E-49 | -1.69E-46 |
| MS.gene055370 | MS.gene071677 | 0.852071 | 5.87E-61 | -1.69E-46 |
| MS.gene055428 | MS.gene071677 | 0.826124 | 3.22E-54 | -1.69E-46 |
| MS.gene056633 | MS.gene071677 | 0.84461 | 6.80E-59 | -1.69E-46 |
| MS.gene056664 | MS.gene071677 | 0.877058 | 8.52E-69 | -1.69E-46 |
| MS.gene056719 | MS.gene071677 | 0.801246 | 9.86E-49 | -1.69E-46 |
| MS.gene056796 | MS.gene071677 | 0.811703 | 6.13E-51 | -1.69E-46 |
| MS.gene05702 | MS.gene071677 | 0.802032 | 6.80E-49 | -1.69E-46 |
| MS.gene057032 | MS.gene071677 | 0.831619 | 1.51E-55 | -1.69E-46 |
| MS.gene057196 | MS.gene071677 | 0.817413 | 3.34E-52 | -1.69E-46 |
| MS.gene057295 | MS.gene071677 | 0.80376 | 2.99E-49 | -1.69E-46 |
| MS.gene058002 | MS.gene071677 | 0.809709 | 1.65E-50 | -1.69E-46 |
| MS.gene058142 | MS.gene071677 | 0.81665 | 4.96E-52 | -1.69E-46 |
| MS.gene058233 | MS.gene071677 | 0.813537 | 2.43E-51 | -1.69E-46 |
| MS.gene058276 | MS.gene071677 | 0.888162 | 7.54E-73 | -1.69E-46 |
| MS.gene058293 | MS.gene071677 | 0.801312 | 9.56E-49 | -1.69E-46 |
| MS.gene058743 | MS.gene071677 | 0.806903 | 6.56E-50 | -1.69E-46 |
| MS.gene058746 | MS.gene071677 | 0.873913 | 1.02E-67 | -1.69E-46 |
| MS.gene059597 | MS.gene071677 | 0.805138 | 1.54E-49 | -1.69E-46 |
| MS.gene059692 | MS.gene071677 | 0.805503 | 1.29E-49 | -1.69E-46 |
| MS.gene059695 | MS.gene071677 | 0.805315 | 1.42E-49 | -1.69E-46 |
| MS.gene059894 | MS.gene071677 | 0.839389 | 1.63E-57 | -1.69E-46 |
| MS.gene060407 | MS.gene071677 | 0.870586 | 1.31E-66 | -1.69E-46 |
| MS.gene061049 | MS.gene071677 | 0.810227 | 1.28E-50 | -1.69E-46 |
| MS.gene061231 | MS.gene071677 | 0.803313 | 3.70E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071677.t1 | MTR_1g079870 | 95.925 | 319 | 12 | 1 | 37 | 354 | 131 | 449 | 0.0 | 593 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071677.t1 | AT3G04550 | 55.000 | 360 | 139 | 8 | 10 | 354 | 98 | 449 | 1.44e-116 | 345 |
| MS.gene071677.t1 | AT5G28500 | 56.347 | 323 | 128 | 7 | 37 | 354 | 120 | 434 | 1.11e-109 | 327 |
| MS.gene071677.t1 | AT5G28500 | 56.338 | 142 | 61 | 1 | 37 | 177 | 120 | 261 | 2.84e-50 | 169 |
Find 84 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGGGACCGGTGGTTAATTT+AGG | 0.114204 | 1.4:+65015124 | MS.gene071677:CDS |
| TGGTAATGATGTTGGTTTAA+AGG | 0.259795 | 1.4:+65015297 | MS.gene071677:CDS |
| GGAAGGAGAAAGGGTGATTA+TGG | 0.275153 | 1.4:+65015015 | MS.gene071677:CDS |
| TGTTCAAGAAAAGCAGTTCT+TGG | 0.278998 | 1.4:-65014809 | None:intergenic |
| CGGAGAAAGGGTGGGAGAAA+TGG | 0.285910 | 1.4:+65015086 | MS.gene071677:CDS |
| ATGGGTGGTGTTACCGGCTT+GGG | 0.286269 | 1.4:+65015105 | MS.gene071677:CDS |
| ATGGGTGTTAATGAGTGTTT+AGG | 0.291608 | 1.4:+65015346 | MS.gene071677:CDS |
| CTATCAGCAACCACTAAAAT+AGG | 0.314068 | 1.4:-65015223 | None:intergenic |
| TAAAGCTAGAAAAGTGGTTT+TGG | 0.317665 | 1.4:+65014856 | MS.gene071677:CDS |
| GGAGAAATGGGTGGTGTTAC+CGG | 0.322308 | 1.4:+65015099 | MS.gene071677:CDS |
| GGGGACCGGTGGTTAATTTA+GGG | 0.336098 | 1.4:+65015125 | MS.gene071677:CDS |
| GGTATTGTGGTGGCGGAGAA+AGG | 0.343947 | 1.4:+65015073 | MS.gene071677:CDS |
| ATATGTTGAGTGAAGAAGTT+TGG | 0.346774 | 1.4:+65015413 | MS.gene071677:CDS |
| TTCAATCTCACCACATTAAC+AGG | 0.351102 | 1.4:-65014935 | None:intergenic |
| GGAGAAAGGGTGGGAGAAAT+GGG | 0.357471 | 1.4:+65015087 | MS.gene071677:CDS |
| TGCCATGGAAGGCTAATAAT+AGG | 0.364102 | 1.4:+65015185 | MS.gene071677:CDS |
| AGCACCTTCTGAGATTAAAA+AGG | 0.372534 | 1.4:+65015039 | MS.gene071677:CDS |
| AGATCTAGCCCGTTCGATAA+AGG | 0.374992 | 1.4:+65014670 | MS.gene071677:CDS |
| TTTGTATTACAGACAAAGTA+AGG | 0.394057 | 1.4:+65014766 | MS.gene071677:CDS |
| GGTGTTACCGGCTTGGGGAC+CGG | 0.395571 | 1.4:+65015111 | MS.gene071677:CDS |
| GGAATGTAGTTATTGTTGTT+AGG | 0.400847 | 1.4:+65015368 | MS.gene071677:CDS |
| TGGGTGTTAATGAGTGTTTA+GGG | 0.409763 | 1.4:+65015347 | MS.gene071677:CDS |
| TGGTTGCTGATAGGAGTAAG+AGG | 0.410027 | 1.4:+65015233 | MS.gene071677:CDS |
| TGTTGGTTTAAAGGTTCAAA+GGG | 0.456616 | 1.4:+65015306 | MS.gene071677:CDS |
| AGGGAGGTGGAGAATGATGA+TGG | 0.457400 | 1.4:+65015253 | MS.gene071677:CDS |
| GTATTGTGGTGGCGGAGAAA+GGG | 0.458441 | 1.4:+65015074 | MS.gene071677:CDS |
| TTGTGGTGGCGGAGAAAGGG+TGG | 0.459053 | 1.4:+65015077 | MS.gene071677:CDS |
| TGGGAAGGCTGAAGAGGAGG+AGG | 0.459630 | 1.4:+65014889 | MS.gene071677:CDS |
| AATGGGTGGTGTTACCGGCT+TGG | 0.460749 | 1.4:+65015104 | MS.gene071677:CDS |
| CGGGAAATCCTTTATCGAAC+GGG | 0.464450 | 1.4:-65014678 | None:intergenic |
| GTTGAGTGGGAAGGCTGAAG+AGG | 0.478627 | 1.4:+65014883 | MS.gene071677:CDS |
| TTTAAAGGTTCAAAGGGGTT+CGG | 0.488260 | 1.4:+65015312 | MS.gene071677:CDS |
| GAGTGGGAAGGCTGAAGAGG+AGG | 0.488401 | 1.4:+65014886 | MS.gene071677:CDS |
| TTTGGAGGAGTTGAGTGGGA+AGG | 0.491934 | 1.4:+65014874 | MS.gene071677:CDS |
| ACAACTCAAAATATCTTATG+TGG | 0.492816 | 1.4:-65013899 | None:intergenic |
| ATTGTGGAGAAGAGATATGA+TGG | 0.494977 | 1.4:+65014635 | MS.gene071677:CDS |
| TAAAGCTGAGGAAGGAGAAA+GGG | 0.501190 | 1.4:+65015006 | MS.gene071677:CDS |
| AAAGATGATGGTAATGATGT+TGG | 0.508132 | 1.4:+65015289 | MS.gene071677:CDS |
| CTCTCTTACTTTGATAGCGG+TGG | 0.514436 | 1.4:+65014548 | MS.gene071677:CDS |
| TATGTTGAGTGAAGAAGTTT+GGG | 0.515005 | 1.4:+65015414 | MS.gene071677:CDS |
| GTAAAGCTGAGGAAGGAGAA+AGG | 0.520531 | 1.4:+65015005 | MS.gene071677:CDS |
| ATGTTGGTTTAAAGGTTCAA+AGG | 0.522076 | 1.4:+65015305 | MS.gene071677:CDS |
| AAAGCAGTTCTTGGATCAGA+AGG | 0.525966 | 1.4:-65014800 | None:intergenic |
| GGAAGGTGAGTTTGGTATTG+TGG | 0.527760 | 1.4:+65015060 | MS.gene071677:CDS |
| TGCAGCAGCACGTTGCGAAG+TGG | 0.531493 | 1.4:-65014603 | None:intergenic |
| TTATATTTAGTAAAAGATGA+TGG | 0.535345 | 1.4:+65015277 | MS.gene071677:CDS |
| TGATAGGAGTAAGAGGGAGG+TGG | 0.538668 | 1.4:+65015240 | MS.gene071677:CDS |
| GGTTGCTGATAGGAGTAAGA+GGG | 0.547205 | 1.4:+65015234 | MS.gene071677:CDS |
| CACCTATTATTAGCCTTCCA+TGG | 0.547326 | 1.4:-65015187 | None:intergenic |
| TGAGTTTGGTATTGTGGTGG+CGG | 0.548046 | 1.4:+65015066 | MS.gene071677:CDS |
| GTCTGATAAAGCTAGAAAAG+TGG | 0.552366 | 1.4:+65014850 | MS.gene071677:CDS |
| GGCTAATAATAGGTGGCGTA+AGG | 0.557273 | 1.4:+65015195 | MS.gene071677:CDS |
| GAGAAGAGATATGATGGAAA+AGG | 0.557379 | 1.4:+65014641 | MS.gene071677:CDS |
| GTTACCGGCTTGGGGACCGG+TGG | 0.557447 | 1.4:+65015114 | MS.gene071677:CDS |
| CCGGTGGTTAATTTAGGGAA+AGG | 0.564815 | 1.4:+65015130 | MS.gene071677:CDS |
| TGCTGATAGGAGTAAGAGGG+AGG | 0.570809 | 1.4:+65015237 | MS.gene071677:CDS |
| AAATAAGCAAGACAATCTCC+CGG | 0.574397 | 1.4:-65014746 | None:intergenic |
| AGGTGAGTTTGGTATTGTGG+TGG | 0.575600 | 1.4:+65015063 | MS.gene071677:CDS |
| TGTGGTGGCGGAGAAAGGGT+GGG | 0.576608 | 1.4:+65015078 | MS.gene071677:CDS |
| GGGAGGTGGAGAATGATGAT+GGG | 0.577445 | 1.4:+65015254 | MS.gene071677:CDS |
| GAGAATCTCTTCATCCGTGT+TGG | 0.578676 | 1.4:-65014528 | None:intergenic |
| AATAAGCAAGACAATCTCCC+GGG | 0.581163 | 1.4:-65014745 | None:intergenic |
| AATGTGGTGAGATTGAAGAT+TGG | 0.584496 | 1.4:+65014941 | MS.gene071677:CDS |
| TGAAGTAGCTGAGGCGACCT+CGG | 0.591494 | 1.4:+65014964 | MS.gene071677:CDS |
| CCTTTCCCTAAATTAACCAC+CGG | 0.591698 | 1.4:-65015130 | None:intergenic |
| TCGGGAAATCCTTTATCGAA+CGG | 0.594692 | 1.4:-65014679 | None:intergenic |
| CAGCACGTTGCGAAGTGGAG+AGG | 0.601970 | 1.4:-65014598 | None:intergenic |
| TTAACCACCGGTCCCCAAGC+CGG | 0.602016 | 1.4:-65015118 | None:intergenic |
| GTTAAAAGTGCCTGTTAATG+TGG | 0.605844 | 1.4:+65014925 | MS.gene071677:CDS |
| ATTCTCTCTTACTTTGATAG+CGG | 0.609195 | 1.4:+65014545 | MS.gene071677:CDS |
| GAAAGGGTGGGAGAAATGGG+TGG | 0.611751 | 1.4:+65015090 | MS.gene071677:CDS |
| CCTTCCTCAGCTTTACACAC+CGG | 0.615461 | 1.4:-65014998 | None:intergenic |
| TGGGTGGTGTTACCGGCTTG+GGG | 0.620926 | 1.4:+65015106 | MS.gene071677:CDS |
| AAGGATTTCCCGAGTAGACG+CGG | 0.620983 | 1.4:+65014689 | MS.gene071677:CDS |
| CCGGTGTGTAAAGCTGAGGA+AGG | 0.623619 | 1.4:+65014998 | MS.gene071677:CDS |
| GAAGATTGGTGAAGTAGCTG+AGG | 0.639205 | 1.4:+65014955 | MS.gene071677:CDS |
| TGCTGCAGCGCGTTTCATTG+TGG | 0.640579 | 1.4:+65014619 | MS.gene071677:CDS |
| AGGCCACCTACTGAAAATGA+TGG | 0.653259 | 1.4:+65015388 | MS.gene071677:CDS |
| CATGGAAGGCTAATAATAGG+TGG | 0.655576 | 1.4:+65015188 | MS.gene071677:CDS |
| TGACACTCTTGTCGCCAACA+CGG | 0.658163 | 1.4:+65014514 | MS.gene071677:CDS |
| AGTAGCTGAGGCGACCTCGG+TGG | 0.686810 | 1.4:+65014967 | MS.gene071677:CDS |
| GTTGGTTTAAAGGTTCAAAG+GGG | 0.692675 | 1.4:+65015307 | MS.gene071677:CDS |
| TTTGCCGGTGTGTAAAGCTG+AGG | 0.704737 | 1.4:+65014994 | MS.gene071677:CDS |
| CACCGGCAAAACAACCACCG+AGG | 0.783907 | 1.4:-65014981 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATATTTAGTAAAAGATGA+TGG | + | chr1.4:65015277-65015296 | MS.gene071677:CDS | 15.0% |
| !!! | AAGATATTTTGAGTTGTTTT+CGG | + | chr1.4:65013905-65013924 | MS.gene071677:CDS | 20.0% |
| ! | ACAACTCAAAATATCTTATG+TGG | - | chr1.4:65013902-65013921 | None:intergenic | 25.0% |
| ! | ATCTATCTATCTATCAGATA+AGG | + | chr1.4:65014013-65014032 | MS.gene071677:intron | 25.0% |
| ! | TTTGTATTACAGACAAAGTA+AGG | + | chr1.4:65014766-65014785 | MS.gene071677:CDS | 25.0% |
| ATATGTTGAGTGAAGAAGTT+TGG | + | chr1.4:65015413-65015432 | MS.gene071677:CDS | 30.0% | |
| ATTAAAAAGGAAGGTGAGTT+TGG | + | chr1.4:65015052-65015071 | MS.gene071677:CDS | 30.0% | |
| ATTCTCTCTTACTTTGATAG+CGG | + | chr1.4:65014545-65014564 | MS.gene071677:CDS | 30.0% | |
| GGGAAACAAAAATCTAAAGA+AGG | + | chr1.4:65013939-65013958 | MS.gene071677:CDS | 30.0% | |
| TATGTTGAGTGAAGAAGTTT+GGG | + | chr1.4:65015414-65015433 | MS.gene071677:CDS | 30.0% | |
| TCTTGTGAAGTATGCAAATT+AGG | - | chr1.4:65014091-65014110 | None:intergenic | 30.0% | |
| TGAAGTGAAGATTGAAGAAT+GGG | - | chr1.4:65014065-65014084 | None:intergenic | 30.0% | |
| ! | AAAGATGATGGTAATGATGT+TGG | + | chr1.4:65015289-65015308 | MS.gene071677:CDS | 30.0% |
| ! | ATATCACCATCATTTTCAGT+AGG | - | chr1.4:65015397-65015416 | None:intergenic | 30.0% |
| ! | ATTTAAGGCGGTAATAAGAA+CGG | - | chr1.4:65014193-65014212 | None:intergenic | 30.0% |
| ! | GGAATGTAGTTATTGTTGTT+AGG | + | chr1.4:65015368-65015387 | MS.gene071677:CDS | 30.0% |
| ! | GTTAGATTTTACACTGAAAG+AGG | - | chr1.4:65013982-65014001 | None:intergenic | 30.0% |
| ! | TAAAGCTAGAAAAGTGGTTT+TGG | + | chr1.4:65014856-65014875 | MS.gene071677:CDS | 30.0% |
| !! | ATGTTGGTTTAAAGGTTCAA+AGG | + | chr1.4:65015305-65015324 | MS.gene071677:CDS | 30.0% |
| !! | TGGTAATGATGTTGGTTTAA+AGG | + | chr1.4:65015297-65015316 | MS.gene071677:CDS | 30.0% |
| !! | TGTTGGTTTAAAGGTTCAAA+GGG | + | chr1.4:65015306-65015325 | MS.gene071677:CDS | 30.0% |
| AAATAAGCAAGACAATCTCC+CGG | - | chr1.4:65014749-65014768 | None:intergenic | 35.0% | |
| AATGTGGTGAGATTGAAGAT+TGG | + | chr1.4:65014941-65014960 | MS.gene071677:CDS | 35.0% | |
| ATGGGTGTTAATGAGTGTTT+AGG | + | chr1.4:65015346-65015365 | MS.gene071677:CDS | 35.0% | |
| ATTGTGGAGAAGAGATATGA+TGG | + | chr1.4:65014635-65014654 | MS.gene071677:CDS | 35.0% | |
| CTATCAGCAACCACTAAAAT+AGG | - | chr1.4:65015226-65015245 | None:intergenic | 35.0% | |
| GTAATAAGAACGGTTGAGAT+TGG | - | chr1.4:65014183-65014202 | None:intergenic | 35.0% | |
| GTCTGATAAAGCTAGAAAAG+TGG | + | chr1.4:65014850-65014869 | MS.gene071677:CDS | 35.0% | |
| GTGAAGTGAAGATTGAAGAA+TGG | - | chr1.4:65014066-65014085 | None:intergenic | 35.0% | |
| GTGTTTACAGAACTGATACA+TGG | - | chr1.4:65014122-65014141 | None:intergenic | 35.0% | |
| TAGACGCGGTGAAAAAAATT+GGG | + | chr1.4:65014703-65014722 | MS.gene071677:CDS | 35.0% | |
| TGGGTGTTAATGAGTGTTTA+GGG | + | chr1.4:65015347-65015366 | MS.gene071677:CDS | 35.0% | |
| TGTTCAAGAAAAGCAGTTCT+TGG | - | chr1.4:65014812-65014831 | None:intergenic | 35.0% | |
| TTCAATCTCACCACATTAAC+AGG | - | chr1.4:65014938-65014957 | None:intergenic | 35.0% | |
| TTTAAAGGTTCAAAGGGGTT+CGG | + | chr1.4:65015312-65015331 | MS.gene071677:CDS | 35.0% | |
| ! | CCTTCCTTTTTAATCTCAGA+AGG | - | chr1.4:65015046-65015065 | None:intergenic | 35.0% |
| ! | GAGAAGAGATATGATGGAAA+AGG | + | chr1.4:65014641-65014660 | MS.gene071677:CDS | 35.0% |
| ! | GTTGGTTTAAAGGTTCAAAG+GGG | + | chr1.4:65015307-65015326 | MS.gene071677:CDS | 35.0% |
| !! | AGCACCTTCTGAGATTAAAA+AGG | + | chr1.4:65015039-65015058 | MS.gene071677:CDS | 35.0% |
| !! | CCTTCTGAGATTAAAAAGGA+AGG | + | chr1.4:65015043-65015062 | MS.gene071677:CDS | 35.0% |
| !! | GAAGATTGAAGAATGGGTTA+TGG | - | chr1.4:65014059-65014078 | None:intergenic | 35.0% |
| !! | GTTAAAAGTGCCTGTTAATG+TGG | + | chr1.4:65014925-65014944 | MS.gene071677:CDS | 35.0% |
| !! | TAAGGAAGAGCCTATTTTAG+TGG | + | chr1.4:65015213-65015232 | MS.gene071677:CDS | 35.0% |
| !! | TCAAGGTTGTCGTATTTTGA+TGG | - | chr1.4:65014326-65014345 | None:intergenic | 35.0% |
| !!! | AGTTTTGATTATCATCTCCC+GGG | + | chr1.4:65014728-65014747 | MS.gene071677:CDS | 35.0% |
| !!! | CAAGGTTGTCGTATTTTGAT+GGG | - | chr1.4:65014325-65014344 | None:intergenic | 35.0% |
| !!! | CTATTTTAGTGGTTGCTGAT+AGG | + | chr1.4:65015224-65015243 | MS.gene071677:CDS | 35.0% |
| !!! | GAGTTTTGATTATCATCTCC+CGG | + | chr1.4:65014727-65014746 | MS.gene071677:CDS | 35.0% |
| !!! | GTTTTTTGCTGTGTGATGAA+GGG | - | chr1.4:65014238-65014257 | None:intergenic | 35.0% |
| !!! | TGTTTTTTGCTGTGTGATGA+AGG | - | chr1.4:65014239-65014258 | None:intergenic | 35.0% |
| AAAGCAGTTCTTGGATCAGA+AGG | - | chr1.4:65014803-65014822 | None:intergenic | 40.0% | |
| AATAAGCAAGACAATCTCCC+GGG | - | chr1.4:65014748-65014767 | None:intergenic | 40.0% | |
| ATAAGAACGGTTGAGATTGG+AGG | - | chr1.4:65014180-65014199 | None:intergenic | 40.0% | |
| CATGGAAGGCTAATAATAGG+TGG | + | chr1.4:65015188-65015207 | MS.gene071677:CDS | 40.0% | |
| CCTTTCCCTAAATTAACCAC+CGG | - | chr1.4:65015133-65015152 | None:intergenic | 40.0% | |
| GTAGACGCGGTGAAAAAAAT+TGG | + | chr1.4:65014702-65014721 | MS.gene071677:CDS | 40.0% | |
| TAAAGCTGAGGAAGGAGAAA+GGG | + | chr1.4:65015006-65015025 | MS.gene071677:CDS | 40.0% | |
| TCGGGAAATCCTTTATCGAA+CGG | - | chr1.4:65014682-65014701 | None:intergenic | 40.0% | |
| TGCCATGGAAGGCTAATAAT+AGG | + | chr1.4:65015185-65015204 | MS.gene071677:CDS | 40.0% | |
| ! | TCACCATCATTTTCAGTAGG+TGG | - | chr1.4:65015394-65015413 | None:intergenic | 40.0% |
| ! | TGTTTTCGGTTATCTCTGGA+GGG | + | chr1.4:65013919-65013938 | MS.gene071677:CDS | 40.0% |
| ! | TTGTTTTCGGTTATCTCTGG+AGG | + | chr1.4:65013918-65013937 | MS.gene071677:CDS | 40.0% |
| !! | CACCTATTATTAGCCTTCCA+TGG | - | chr1.4:65015190-65015209 | None:intergenic | 40.0% |
| !! | GAGTTGTTTTCGGTTATCTC+TGG | + | chr1.4:65013915-65013934 | MS.gene071677:CDS | 40.0% |
| !! | GGTTGGTATAGTTGTTTCTG+TGG | - | chr1.4:65014278-65014297 | None:intergenic | 40.0% |
| !!! | AGCTAGAAAAGTGGTTTTGG+AGG | + | chr1.4:65014859-65014878 | MS.gene071677:CDS | 40.0% |
| !!! | GGTTCGGTTTTGAAGGAAAT+GGG | + | chr1.4:65015328-65015347 | MS.gene071677:CDS | 40.0% |
| !!! | TATTTTGATGGGAGAGGTGT+TGG | - | chr1.4:65014314-65014333 | None:intergenic | 40.0% |
| !!! | TTGTCGTATTTTGATGGGAG+AGG | - | chr1.4:65014320-65014339 | None:intergenic | 40.0% |
| !!! | TTTTTTTCACCGCGTCTACT+CGG | - | chr1.4:65014701-65014720 | None:intergenic | 40.0% |
| AGATCTAGCCCGTTCGATAA+AGG | + | chr1.4:65014670-65014689 | MS.gene071677:CDS | 45.0% | |
| AGGCCACCTACTGAAAATGA+TGG | + | chr1.4:65015388-65015407 | MS.gene071677:CDS | 45.0% | |
| AGGTGAGTTTGGTATTGTGG+TGG | + | chr1.4:65015063-65015082 | MS.gene071677:CDS | 45.0% | |
| CCAGTGGTTTCTTCAATGGT+GGG | - | chr1.4:65014446-65014465 | None:intergenic | 45.0% | |
| CCGGTGGTTAATTTAGGGAA+AGG | + | chr1.4:65015130-65015149 | MS.gene071677:CDS | 45.0% | |
| CGGGAAATCCTTTATCGAAC+GGG | - | chr1.4:65014681-65014700 | None:intergenic | 45.0% | |
| GAAGATTGGTGAAGTAGCTG+AGG | + | chr1.4:65014955-65014974 | MS.gene071677:CDS | 45.0% | |
| GAGAATCTCTTCATCCGTGT+TGG | - | chr1.4:65014531-65014550 | None:intergenic | 45.0% | |
| GATACGATTCTGTTCAACGC+CGG | - | chr1.4:65014474-65014493 | None:intergenic | 45.0% | |
| GATGCCAGTGGTTTCTTCAA+TGG | - | chr1.4:65014450-65014469 | None:intergenic | 45.0% | |
| GGAAGGAGAAAGGGTGATTA+TGG | + | chr1.4:65015015-65015034 | MS.gene071677:CDS | 45.0% | |
| GGAAGGTGAGTTTGGTATTG+TGG | + | chr1.4:65015060-65015079 | MS.gene071677:CDS | 45.0% | |
| GGCTAATAATAGGTGGCGTA+AGG | + | chr1.4:65015195-65015214 | MS.gene071677:CDS | 45.0% | |
| GGTTGCTGATAGGAGTAAGA+GGG | + | chr1.4:65015234-65015253 | MS.gene071677:CDS | 45.0% | |
| GTAAAGCTGAGGAAGGAGAA+AGG | + | chr1.4:65015005-65015024 | MS.gene071677:CDS | 45.0% | |
| TGAGTTTGGTATTGTGGTGG+CGG | + | chr1.4:65015066-65015085 | MS.gene071677:CDS | 45.0% | |
| TGATGAAGGGTTGTTGAGGA+CGG | - | chr1.4:65014225-65014244 | None:intergenic | 45.0% | |
| TGGTTGCTGATAGGAGTAAG+AGG | + | chr1.4:65015233-65015252 | MS.gene071677:CDS | 45.0% | |
| TGTGTGATGAAGGGTTGTTG+AGG | - | chr1.4:65014229-65014248 | None:intergenic | 45.0% | |
| ! | CGGCTGAGATTGATTTAAGG+CGG | - | chr1.4:65014205-65014224 | None:intergenic | 45.0% |
| ! | GGACGGCTGAGATTGATTTA+AGG | - | chr1.4:65014208-65014227 | None:intergenic | 45.0% |
| !! | CTCTCTTACTTTGATAGCGG+TGG | + | chr1.4:65014548-65014567 | MS.gene071677:CDS | 45.0% |
| !! | TCAAAGGGGTTCGGTTTTGA+AGG | + | chr1.4:65015321-65015340 | MS.gene071677:CDS | 45.0% |
| !!! | AGGCGTTGTTGTGTCGTTTT+TGG | + | chr1.4:65015150-65015169 | MS.gene071677:CDS | 45.0% |
| !!! | GGGTTCGGTTTTGAAGGAAA+TGG | + | chr1.4:65015327-65015346 | MS.gene071677:CDS | 45.0% |
| !!! | TGGTTTTGGAGGAGTTGAGT+GGG | + | chr1.4:65014870-65014889 | MS.gene071677:CDS | 45.0% |
| !!! | TTTTTTCACCGCGTCTACTC+GGG | - | chr1.4:65014700-65014719 | None:intergenic | 45.0% |
| AAGGATTTCCCGAGTAGACG+CGG | + | chr1.4:65014689-65014708 | MS.gene071677:CDS | 50.0% | |
| ACGGTTGAGATTGGAGGAAG+AGG | - | chr1.4:65014174-65014193 | None:intergenic | 50.0% | |
| AGGGAGGTGGAGAATGATGA+TGG | + | chr1.4:65015253-65015272 | MS.gene071677:CDS | 50.0% | |
| CCCACCATTGAAGAAACCAC+TGG | + | chr1.4:65014443-65014462 | MS.gene071677:intron | 50.0% | |
| CCTTCCTCAGCTTTACACAC+CGG | - | chr1.4:65015001-65015020 | None:intergenic | 50.0% | |
| CGGTTGAGATTGGAGGAAGA+GGG | - | chr1.4:65014173-65014192 | None:intergenic | 50.0% | |
| GAAGAAACCACTGGCATCAC+CGG | + | chr1.4:65014452-65014471 | MS.gene071677:intron | 50.0% | |
| GCCAGTGGTTTCTTCAATGG+TGG | - | chr1.4:65014447-65014466 | None:intergenic | 50.0% | |
| GGAGAAAGGGTGGGAGAAAT+GGG | + | chr1.4:65015087-65015106 | MS.gene071677:CDS | 50.0% | |
| GGGAGGTGGAGAATGATGAT+GGG | + | chr1.4:65015254-65015273 | MS.gene071677:CDS | 50.0% | |
| GGGGACCGGTGGTTAATTTA+GGG | + | chr1.4:65015125-65015144 | MS.gene071677:CDS | 50.0% | |
| TACGACAACCTTGACATCCC+AGG | + | chr1.4:65014332-65014351 | MS.gene071677:intron | 50.0% | |
| TGAAAAGCCTTCTCGGAGGA+GGG | - | chr1.4:65014420-65014439 | None:intergenic | 50.0% | |
| TGACACTCTTGTCGCCAACA+CGG | + | chr1.4:65014514-65014533 | MS.gene071677:CDS | 50.0% | |
| TGATAGGAGTAAGAGGGAGG+TGG | + | chr1.4:65015240-65015259 | MS.gene071677:CDS | 50.0% | |
| TGCTGATAGGAGTAAGAGGG+AGG | + | chr1.4:65015237-65015256 | MS.gene071677:CDS | 50.0% | |
| TGGGAGGTGAAAAGCCTTCT+CGG | - | chr1.4:65014427-65014446 | None:intergenic | 50.0% | |
| TGGGGACCGGTGGTTAATTT+AGG | + | chr1.4:65015124-65015143 | MS.gene071677:CDS | 50.0% | |
| TTTGCCGGTGTGTAAAGCTG+AGG | + | chr1.4:65014994-65015013 | MS.gene071677:CDS | 50.0% | |
| TTTGGAGGAGTTGAGTGGGA+AGG | + | chr1.4:65014874-65014893 | MS.gene071677:CDS | 50.0% | |
| ! | GTGGTTTCTTCAATGGTGGG+AGG | - | chr1.4:65014443-65014462 | None:intergenic | 50.0% |
| ! | TGCGAGAGTTTTGCCATGGA+AGG | + | chr1.4:65015174-65015193 | MS.gene071677:CDS | 50.0% |
| ! | TGGATGCGAGAGTTTTGCCA+TGG | + | chr1.4:65015170-65015189 | MS.gene071677:CDS | 50.0% |
| !! | GGAGAAATGGGTGGTGTTAC+CGG | + | chr1.4:65015099-65015118 | MS.gene071677:CDS | 50.0% |
| !! | GTATTGTGGTGGCGGAGAAA+GGG | + | chr1.4:65015074-65015093 | MS.gene071677:CDS | 50.0% |
| !! | TTTGATGGGAGAGGTGTTGG+TGG | - | chr1.4:65014311-65014330 | None:intergenic | 50.0% |
| !!! | GTGGTTTTGGAGGAGTTGAG+TGG | + | chr1.4:65014869-65014888 | MS.gene071677:CDS | 50.0% |
| ATCACTTCCCTCCTCCGAGA+AGG | + | chr1.4:65014410-65014429 | MS.gene071677:intron | 55.0% | |
| ATTCGTGCCATGCACCGAGA+CGG | - | chr1.4:65014379-65014398 | None:intergenic | 55.0% | |
| CAAGGATGTCGATGCGTCCT+GGG | - | chr1.4:65014352-65014371 | None:intergenic | 55.0% | |
| CCGGTGTGTAAAGCTGAGGA+AGG | + | chr1.4:65014998-65015017 | MS.gene071677:CDS | 55.0% | |
| CGGAGAAAGGGTGGGAGAAA+TGG | + | chr1.4:65015086-65015105 | MS.gene071677:CDS | 55.0% | |
| GAAAGGGTGGGAGAAATGGG+TGG | + | chr1.4:65015090-65015109 | MS.gene071677:CDS | 55.0% | |
| GACATCCTTGCCAACCGTCT+CGG | + | chr1.4:65014362-65014381 | MS.gene071677:intron | 55.0% | |
| GAGGTGAAAAGCCTTCTCGG+AGG | - | chr1.4:65014424-65014443 | None:intergenic | 55.0% | |
| GTGAAAAGCCTTCTCGGAGG+AGG | - | chr1.4:65014421-65014440 | None:intergenic | 55.0% | |
| GTTGAGTGGGAAGGCTGAAG+AGG | + | chr1.4:65014883-65014902 | MS.gene071677:CDS | 55.0% | |
| TGAAGTAGCTGAGGCGACCT+CGG | + | chr1.4:65014964-65014983 | MS.gene071677:CDS | 55.0% | |
| TGCTGCAGCGCGTTTCATTG+TGG | + | chr1.4:65014619-65014638 | MS.gene071677:CDS | 55.0% | |
| !! | AATGGGTGGTGTTACCGGCT+TGG | + | chr1.4:65015104-65015123 | MS.gene071677:CDS | 55.0% |
| !! | ATGGGTGGTGTTACCGGCTT+GGG | + | chr1.4:65015105-65015124 | MS.gene071677:CDS | 55.0% |
| !! | GACCTCGGTGGTTGTTTTGC+CGG | + | chr1.4:65014979-65014998 | MS.gene071677:CDS | 55.0% |
| !! | GGTATTGTGGTGGCGGAGAA+AGG | + | chr1.4:65015073-65015092 | MS.gene071677:CDS | 55.0% |
| ATGCACCGAGACGGTTGGCA+AGG | - | chr1.4:65014370-65014389 | None:intergenic | 60.0% | |
| CACCGGCAAAACAACCACCG+AGG | - | chr1.4:65014984-65015003 | None:intergenic | 60.0% | |
| CAGCACGTTGCGAAGTGGAG+AGG | - | chr1.4:65014601-65014620 | None:intergenic | 60.0% | |
| CGATGCGTCCTGGGATGTCA+AGG | - | chr1.4:65014343-65014362 | None:intergenic | 60.0% | |
| CGGAGGAGGGAAGTGATGAG+AGG | - | chr1.4:65014407-65014426 | None:intergenic | 60.0% | |
| GAGTGGGAAGGCTGAAGAGG+AGG | + | chr1.4:65014886-65014905 | MS.gene071677:CDS | 60.0% | |
| GCAAGGATGTCGATGCGTCC+TGG | - | chr1.4:65014353-65014372 | None:intergenic | 60.0% | |
| TGCAGCAGCACGTTGCGAAG+TGG | - | chr1.4:65014606-65014625 | None:intergenic | 60.0% | |
| TGGGAAGGCTGAAGAGGAGG+AGG | + | chr1.4:65014889-65014908 | MS.gene071677:CDS | 60.0% | |
| TTAACCACCGGTCCCCAAGC+CGG | - | chr1.4:65015121-65015140 | None:intergenic | 60.0% | |
| TTCAACGCCGGTGATGCCAG+TGG | - | chr1.4:65014462-65014481 | None:intergenic | 60.0% | |
| ! | TTGCCAACCGTCTCGGTGCA+TGG | + | chr1.4:65014369-65014388 | MS.gene071677:intron | 60.0% |
| !! | AGGTGTTGGTGGTGGTCGGA+AGG | - | chr1.4:65014300-65014319 | None:intergenic | 60.0% |
| !! | GATGGGAGAGGTGTTGGTGG+TGG | - | chr1.4:65014308-65014327 | None:intergenic | 60.0% |
| !! | GGAGAGGTGTTGGTGGTGGT+CGG | - | chr1.4:65014304-65014323 | None:intergenic | 60.0% |
| !! | GGTGTTGGTGGTGGTCGGAA+GGG | - | chr1.4:65014299-65014318 | None:intergenic | 60.0% |
| !! | TGGGTGGTGTTACCGGCTTG+GGG | + | chr1.4:65015106-65015125 | MS.gene071677:CDS | 60.0% |
| !! | TGTGGTGGCGGAGAAAGGGT+GGG | + | chr1.4:65015078-65015097 | MS.gene071677:CDS | 60.0% |
| !! | TTGGTGGTGGTCGGAAGGGT+TGG | - | chr1.4:65014295-65014314 | None:intergenic | 60.0% |
| !! | TTGTGGTGGCGGAGAAAGGG+TGG | + | chr1.4:65015077-65015096 | MS.gene071677:CDS | 60.0% |
| AGTAGCTGAGGCGACCTCGG+TGG | + | chr1.4:65014967-65014986 | MS.gene071677:CDS | 65.0% | |
| GTGCCATGCACCGAGACGGT+TGG | - | chr1.4:65014375-65014394 | None:intergenic | 65.0% | |
| !! | GGTGTTACCGGCTTGGGGAC+CGG | + | chr1.4:65015111-65015130 | MS.gene071677:CDS | 65.0% |
| !! | GTTACCGGCTTGGGGACCGG+TGG | + | chr1.4:65015114-65015133 | MS.gene071677:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 65013882 | 65015441 | 65013882 | ID=MS.gene071677 |
| chr1.4 | mRNA | 65013882 | 65015441 | 65013882 | ID=MS.gene071677.t1;Parent=MS.gene071677 |
| chr1.4 | exon | 65013882 | 65013989 | 65013882 | ID=MS.gene071677.t1.exon1;Parent=MS.gene071677.t1 |
| chr1.4 | CDS | 65013882 | 65013989 | 65013882 | ID=cds.MS.gene071677.t1;Parent=MS.gene071677.t1 |
| chr1.4 | exon | 65014485 | 65015441 | 65014485 | ID=MS.gene071677.t1.exon2;Parent=MS.gene071677.t1 |
| chr1.4 | CDS | 65014485 | 65015441 | 65014485 | ID=cds.MS.gene071677.t1;Parent=MS.gene071677.t1 |
| Gene Sequence |
| Protein sequence |
