Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072283.t1 | XP_013444168.1 | 88.6 | 307 | 33 | 1 | 1 | 305 | 1 | 307 | 9.50E-99 | 370.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072283.t1 | Q9BZV1 | 42.9 | 56 | 32 | 0 | 211 | 266 | 170 | 225 | 8.6e-08 | 59.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072283.t1 | A0A072TXC9 | 88.6 | 307 | 33 | 1 | 1 | 305 | 1 | 307 | 6.8e-99 | 370.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene072283 | 0.853985 | 1.66E-61 | -1.69E-46 |
| MS.gene049159 | MS.gene072283 | 0.801864 | 7.36E-49 | -1.69E-46 |
| MS.gene049350 | MS.gene072283 | 0.80178 | 7.66E-49 | -1.69E-46 |
| MS.gene049711 | MS.gene072283 | 0.800337 | 1.51E-48 | -1.69E-46 |
| MS.gene049821 | MS.gene072283 | 0.804098 | 2.54E-49 | -1.69E-46 |
| MS.gene049850 | MS.gene072283 | 0.808041 | 3.76E-50 | -1.69E-46 |
| MS.gene050807 | MS.gene072283 | 0.812986 | 3.22E-51 | -1.69E-46 |
| MS.gene050815 | MS.gene072283 | 0.812203 | 4.77E-51 | -1.69E-46 |
| MS.gene050901 | MS.gene072283 | 0.816261 | 6.06E-52 | -1.69E-46 |
| MS.gene051247 | MS.gene072283 | 0.825399 | 4.79E-54 | -1.69E-46 |
| MS.gene051328 | MS.gene072283 | 0.830267 | 3.23E-55 | -1.69E-46 |
| MS.gene051719 | MS.gene072283 | 0.84259 | 2.36E-58 | -1.69E-46 |
| MS.gene051720 | MS.gene072283 | 0.847251 | 1.30E-59 | -1.69E-46 |
| MS.gene052020 | MS.gene072283 | 0.807102 | 5.95E-50 | -1.69E-46 |
| MS.gene052516 | MS.gene072283 | 0.832593 | 8.65E-56 | -1.69E-46 |
| MS.gene052519 | MS.gene072283 | 0.810595 | 1.07E-50 | -1.69E-46 |
| MS.gene052611 | MS.gene072283 | 0.813838 | 2.09E-51 | -1.69E-46 |
| MS.gene052863 | MS.gene072283 | 0.836774 | 7.68E-57 | -1.69E-46 |
| MS.gene052896 | MS.gene072283 | 0.820126 | 8.09E-53 | -1.69E-46 |
| MS.gene053008 | MS.gene072283 | 0.813236 | 2.84E-51 | -1.69E-46 |
| MS.gene053226 | MS.gene072283 | 0.819279 | 1.26E-52 | -1.69E-46 |
| MS.gene053581 | MS.gene072283 | 0.80429 | 2.32E-49 | -1.69E-46 |
| MS.gene05458 | MS.gene072283 | 0.824069 | 9.85E-54 | -1.69E-46 |
| MS.gene054651 | MS.gene072283 | 0.806131 | 9.55E-50 | -1.69E-46 |
| MS.gene054775 | MS.gene072283 | 0.836546 | 8.78E-57 | -1.69E-46 |
| MS.gene054801 | MS.gene072283 | 0.801551 | 8.54E-49 | -1.69E-46 |
| MS.gene055144 | MS.gene072283 | 0.835139 | 2.00E-56 | -1.69E-46 |
| MS.gene055465 | MS.gene072283 | 0.822745 | 2.01E-53 | -1.69E-46 |
| MS.gene055466 | MS.gene072283 | 0.842305 | 2.80E-58 | -1.69E-46 |
| MS.gene055468 | MS.gene072283 | 0.831357 | 1.75E-55 | -1.69E-46 |
| MS.gene055580 | MS.gene072283 | -0.803576 | 3.26E-49 | -1.69E-46 |
| MS.gene055608 | MS.gene072283 | 0.800602 | 1.33E-48 | -1.69E-46 |
| MS.gene055818 | MS.gene072283 | 0.82737 | 1.62E-54 | -1.69E-46 |
| MS.gene056308 | MS.gene072283 | 0.820616 | 6.24E-53 | -1.69E-46 |
| MS.gene056595 | MS.gene072283 | 0.814147 | 1.79E-51 | -1.69E-46 |
| MS.gene058339 | MS.gene072283 | 0.844198 | 8.77E-59 | -1.69E-46 |
| MS.gene05847 | MS.gene072283 | 0.816664 | 4.92E-52 | -1.69E-46 |
| MS.gene05894 | MS.gene072283 | 0.803495 | 3.39E-49 | -1.69E-46 |
| MS.gene059842 | MS.gene072283 | 0.818929 | 1.52E-52 | -1.69E-46 |
| MS.gene059937 | MS.gene072283 | 0.818805 | 1.62E-52 | -1.69E-46 |
| MS.gene060429 | MS.gene072283 | 0.824244 | 8.97E-54 | -1.69E-46 |
| MS.gene060519 | MS.gene072283 | 0.800175 | 1.63E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072283.t1 | MTR_8g013030 | 94.463 | 307 | 15 | 1 | 1 | 305 | 1 | 307 | 0.0 | 590 |
| MS.gene072283.t1 | MTR_8g085380 | 54.902 | 306 | 133 | 4 | 1 | 302 | 104 | 408 | 8.77e-93 | 281 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072283.t1 | AT1G04850 | 55.195 | 308 | 132 | 4 | 1 | 302 | 17 | 324 | 4.83e-95 | 284 |
| MS.gene072283.t1 | AT1G04850 | 55.195 | 308 | 132 | 4 | 1 | 302 | 106 | 413 | 3.32e-94 | 285 |
| MS.gene072283.t1 | AT5G48690 | 50.325 | 308 | 143 | 7 | 6 | 304 | 12 | 318 | 3.20e-87 | 264 |
| MS.gene072283.t1 | AT5G48690 | 53.922 | 204 | 87 | 5 | 107 | 304 | 66 | 268 | 1.82e-62 | 199 |
| MS.gene072283.t1 | AT5G48690 | 47.826 | 207 | 101 | 5 | 6 | 206 | 12 | 217 | 3.07e-47 | 159 |
Find 47 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATGAAAGCACAGTATTTA+AGG | 0.147947 | 8.3:+75294422 | MS.gene072283:CDS |
| GATAGAGTTGGAAGTTTAGA+TGG | 0.214147 | 8.3:+75297225 | MS.gene072283:CDS |
| ATTCTCATTTCTTCTGTGAT+AGG | 0.247492 | 8.3:-75294403 | None:intergenic |
| AAATGTCTTACTTGGAATAA+TGG | 0.248440 | 8.3:-75297009 | None:intergenic |
| TTCCTTTACAGTTAAATAGA+AGG | 0.370449 | 8.3:+75296146 | MS.gene072283:intron |
| ACAAGAGCACTGTACTATTC+TGG | 0.377911 | 8.3:+75293913 | MS.gene072283:CDS |
| AATAGGCAATAACAGCTTAG+AGG | 0.406935 | 8.3:+75294162 | MS.gene072283:intron |
| GCAATGACAAATCCTTACTT+TGG | 0.409516 | 8.3:+75297363 | MS.gene072283:CDS |
| CTGGTGATCTCACATTTGCT+TGG | 0.411365 | 8.3:-75296195 | None:intergenic |
| GCTTGAAGACCTTGAAGAAA+TGG | 0.417815 | 8.3:+75293870 | MS.gene072283:CDS |
| AGCACTTGAGAGAATGTTTG+AGG | 0.424843 | 8.3:+75296394 | MS.gene072283:CDS |
| CTTGTATCTTCCTAGTGAAA+AGG | 0.431080 | 8.3:+75297296 | MS.gene072283:CDS |
| TTCTCATTTCTTCTGTGATA+GGG | 0.431613 | 8.3:-75294402 | None:intergenic |
| GTGGAAATGCCATTTCTTCA+AGG | 0.434871 | 8.3:-75293879 | None:intergenic |
| ACATTTGCTTGGCTTTCTAA+AGG | 0.450784 | 8.3:-75296184 | None:intergenic |
| TCTTGCTTTATCACAATGGC+TGG | 0.454277 | 8.3:-75296214 | None:intergenic |
| TTAAATAGAAGGTCTGTACT+TGG | 0.465070 | 8.3:+75296157 | MS.gene072283:CDS |
| TATCCTGCTCTAGTTTCTTG+AGG | 0.473441 | 8.3:-75295783 | None:intergenic |
| GAAACACTTCTAGTGTATGT+TGG | 0.482560 | 8.3:+75296931 | MS.gene072283:CDS |
| CAAGAAACTAGAGCAGGATA+AGG | 0.505428 | 8.3:+75295786 | MS.gene072283:CDS |
| TTTCTTTAACAGGATAGAGT+TGG | 0.506570 | 8.3:+75297213 | MS.gene072283:intron |
| CGGAAGAAAATGAAAGAAAA+CGG | 0.506897 | 8.3:+75295611 | MS.gene072283:CDS |
| GTACTTAAAAGTCCAAAGTA+AGG | 0.507326 | 8.3:-75297375 | None:intergenic |
| GCTCTTGTTGCCCTTGCATG+TGG | 0.512999 | 8.3:-75293898 | None:intergenic |
| CATTGTGATAAAGCAAGAAA+AGG | 0.520403 | 8.3:+75296219 | MS.gene072283:CDS |
| AAGAAGAAGAACAAAGAGCT+AGG | 0.531028 | 8.3:+75295752 | MS.gene072283:CDS |
| TCTTCTGTGATAGGGAATGA+TGG | 0.531487 | 8.3:-75294394 | None:intergenic |
| ATGGAACTACTAAGTTCAGC+TGG | 0.537946 | 8.3:+75297324 | MS.gene072283:CDS |
| AGAGTTGGAAGTTTAGATGG+AGG | 0.539241 | 8.3:+75297228 | MS.gene072283:CDS |
| GCTTAGAGGATGCTATAACT+TGG | 0.541270 | 8.3:+75294176 | MS.gene072283:CDS |
| GTAGAGTTTCTTGAGCTATG+TGG | 0.542378 | 8.3:+75297252 | MS.gene072283:CDS |
| AGAGGATGCTATAACTTGGA+TGG | 0.549716 | 8.3:+75294180 | MS.gene072283:CDS |
| GTGAAAATGCAAGAATCAGA+AGG | 0.554564 | 8.3:+75296902 | MS.gene072283:CDS |
| GTCTCTCAAGCGTGAACACA+AGG | 0.558102 | 8.3:+75296416 | MS.gene072283:CDS |
| ATACACTAGAAGTGTTTCAA+AGG | 0.560419 | 8.3:-75296926 | None:intergenic |
| AAATGGCATTTCCACATGCA+AGG | 0.567048 | 8.3:+75293887 | MS.gene072283:CDS |
| TCCTAGTGAAAAGGTTGACA+TGG | 0.567134 | 8.3:+75297305 | MS.gene072283:CDS |
| GCAGGGAACAAGTGCGAGAG+AGG | 0.569066 | 8.3:+75294790 | MS.gene072283:intron |
| CATCCTCAAGAAACTAGAGC+AGG | 0.588545 | 8.3:+75295780 | MS.gene072283:CDS |
| AATGGCATTTCCACATGCAA+GGG | 0.602200 | 8.3:+75293888 | MS.gene072283:CDS |
| TCTTGAGGCAAAGCGGATTG+CGG | 0.602925 | 8.3:+75295591 | MS.gene072283:CDS |
| AGATATTGATGAGATTCCGT+TGG | 0.608755 | 8.3:+75294222 | MS.gene072283:CDS |
| AAATGTTGTCAAGAATCCTA+AGG | 0.615510 | 8.3:+75296954 | MS.gene072283:CDS |
| ATCAGGTAAGAAACTTCTTG+AGG | 0.616254 | 8.3:+75295576 | MS.gene072283:CDS |
| TGAAAATGCAAGAATCAGAA+GGG | 0.643372 | 8.3:+75296903 | MS.gene072283:CDS |
| TGTGATAGGGAATGATGGAG+AGG | 0.655551 | 8.3:-75294389 | None:intergenic |
| AGAAACTTCTTGAGGCAAAG+CGG | 0.679777 | 8.3:+75295584 | MS.gene072283:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTATATATTTTTTTCTTT+TGG | + | chr8.3:75294478-75294497 | MS.gene072283:intron | 10.0% |
| !! | ATAAAAAGAAGAAAAAATGA+GGG | - | chr8.3:75294258-75294277 | None:intergenic | 15.0% |
| !! | TATAAAAAGAAGAAAAAATG+AGG | - | chr8.3:75294259-75294278 | None:intergenic | 15.0% |
| !! | TGAAGAAGTTAATAAAATTA+AGG | - | chr8.3:75294855-75294874 | None:intergenic | 15.0% |
| !!! | TAATTTGTTAAAATCTTAAC+AGG | + | chr8.3:75294342-75294361 | MS.gene072283:intron | 15.0% |
| !!! | TTTAAAACCAATATCTTTTT+AGG | - | chr8.3:75297182-75297201 | None:intergenic | 15.0% |
| !! | AAAATAAACTCAACAACTTA+TGG | - | chr8.3:75296005-75296024 | None:intergenic | 20.0% |
| !! | AAACTCTTCAAGAAAATATT+TGG | - | chr8.3:75295827-75295846 | None:intergenic | 20.0% |
| !! | AAAGAAATATTAGAAGATGA+TGG | - | chr8.3:75295110-75295129 | None:intergenic | 20.0% |
| !! | AAAGAACGAAGAAAAAATAA+TGG | + | chr8.3:75294815-75294834 | MS.gene072283:CDS | 20.0% |
| !! | AAGATAATGAAAATCTATGT+TGG | - | chr8.3:75295526-75295545 | None:intergenic | 20.0% |
| !! | AATCAAAACATTTGTGTTTA+AGG | - | chr8.3:75294141-75294160 | None:intergenic | 20.0% |
| !! | ATAAACAAATGCAAATGAAA+TGG | + | chr8.3:75294979-75294998 | MS.gene072283:intron | 20.0% |
| !! | ATCACAATGTTATTAAATAG+TGG | - | chr8.3:75295364-75295383 | None:intergenic | 20.0% |
| !! | CAATATTCAAATTCTCTATA+GGG | + | chr8.3:75296880-75296899 | MS.gene072283:intron | 20.0% |
| !! | CATTTGAAAAAACAAATGTA+TGG | - | chr8.3:75296850-75296869 | None:intergenic | 20.0% |
| !! | CTAAATCTTATACATTTCAA+TGG | + | chr8.3:75296328-75296347 | MS.gene072283:intron | 20.0% |
| !! | TCAATATTCAAATTCTCTAT+AGG | + | chr8.3:75296879-75296898 | MS.gene072283:intron | 20.0% |
| !!! | AAAAATAATGGAAAGAGAAA+AGG | + | chr8.3:75294827-75294846 | MS.gene072283:CDS | 20.0% |
| !!! | CACAAATGTTTTGATTTAAT+AGG | + | chr8.3:75294145-75294164 | MS.gene072283:intron | 20.0% |
| !!! | CATCTATGTTCATTTTATAT+TGG | + | chr8.3:75296251-75296270 | MS.gene072283:intron | 20.0% |
| !!! | CTATTTTTTCAAGCTATTAT+CGG | + | chr8.3:75294556-75294575 | MS.gene072283:intron | 20.0% |
| !!! | GATTTTCATTATCTTTTCAA+TGG | + | chr8.3:75295531-75295550 | MS.gene072283:intron | 20.0% |
| !!! | TATAATATTTAAGTGTTGCA+GGG | + | chr8.3:75294773-75294792 | MS.gene072283:intron | 20.0% |
| !!! | TCTGAATATAATTTTATGAG+TGG | - | chr8.3:75294680-75294699 | None:intergenic | 20.0% |
| !!! | TTTAAAACTTTGATTTGCAT+TGG | + | chr8.3:75294317-75294336 | MS.gene072283:intron | 20.0% |
| !!! | TTTGAACAAACCATTATTTT+CGG | - | chr8.3:75295194-75295213 | None:intergenic | 20.0% |
| !!! | TTTTCCAAAACAAAACATAT+TGG | + | chr8.3:75297029-75297048 | MS.gene072283:intron | 20.0% |
| ! | AAAACAAAACATATTGGATG+TGG | + | chr8.3:75297035-75297054 | MS.gene072283:intron | 25.0% |
| ! | AAATGTCTTACTTGGAATAA+TGG | - | chr8.3:75297012-75297031 | None:intergenic | 25.0% |
| ! | AATGTGATGAAGCAAATATA+AGG | - | chr8.3:75294921-75294940 | None:intergenic | 25.0% |
| ! | ACAATGTTATTAAATAGTGG+CGG | - | chr8.3:75295361-75295380 | None:intergenic | 25.0% |
| ! | ATTGTAAAATAGCAGGTATA+AGG | - | chr8.3:75295243-75295262 | None:intergenic | 25.0% |
| ! | CCAAAATATTGTAAAATAGC+AGG | - | chr8.3:75295250-75295269 | None:intergenic | 25.0% |
| ! | CTATACTTAAACATAACTCT+TGG | + | chr8.3:75296509-75296528 | MS.gene072283:intron | 25.0% |
| ! | CTATTTAACTGTAAAGGAAA+AGG | - | chr8.3:75296145-75296164 | None:intergenic | 25.0% |
| ! | TAAATATTATAGCGAAACAC+AGG | - | chr8.3:75294764-75294783 | None:intergenic | 25.0% |
| ! | TATGTTTCTTCTATGTTCTT+TGG | + | chr8.3:75294083-75294102 | MS.gene072283:intron | 25.0% |
| ! | TTAGATAACACAATCTCAAA+AGG | - | chr8.3:75296312-75296331 | None:intergenic | 25.0% |
| ! | TTCCTTTACAGTTAAATAGA+AGG | + | chr8.3:75296146-75296165 | MS.gene072283:intron | 25.0% |
| ! | TTCTAACTATATCAATCTCT+TGG | + | chr8.3:75296080-75296099 | MS.gene072283:intron | 25.0% |
| !! | ACTATGATTTTCACTAATTC+TGG | + | chr8.3:75295469-75295488 | MS.gene072283:intron | 25.0% |
| !! | CTATAATATTTAAGTGTTGC+AGG | + | chr8.3:75294772-75294791 | MS.gene072283:intron | 25.0% |
| !! | CTTGATGATTACTATTTACT+AGG | + | chr8.3:75295637-75295656 | MS.gene072283:intron | 25.0% |
| !! | CTTTTCAATGGTATGATTTT+AGG | + | chr8.3:75295543-75295562 | MS.gene072283:intron | 25.0% |
| !! | GAATATAATTTTATGAGTGG+AGG | - | chr8.3:75294677-75294696 | None:intergenic | 25.0% |
| !! | GACATGTTAGTTGTTATTAT+CGG | + | chr8.3:75296751-75296770 | MS.gene072283:intron | 25.0% |
| !! | GGAAAAGGTATACAAAAAAA+AGG | - | chr8.3:75296130-75296149 | None:intergenic | 25.0% |
| !!! | ACATCCAATATGTTTTGTTT+TGG | - | chr8.3:75297036-75297055 | None:intergenic | 25.0% |
| !!! | CCTGCTATTTTACAATATTT+TGG | + | chr8.3:75295247-75295266 | MS.gene072283:intron | 25.0% |
| AAATGTTGTCAAGAATCCTA+AGG | + | chr8.3:75296954-75296973 | MS.gene072283:CDS | 30.0% | |
| AGACATTAACTCATTCATTC+TGG | + | chr8.3:75294697-75294716 | MS.gene072283:intron | 30.0% | |
| ATCCTAAGGAAGAAAAATAC+AGG | + | chr8.3:75296968-75296987 | MS.gene072283:CDS | 30.0% | |
| ATTCTCATTTCTTCTGTGAT+AGG | - | chr8.3:75294406-75294425 | None:intergenic | 30.0% | |
| CAATTCTTAGGTATCTAATG+AGG | - | chr8.3:75294047-75294066 | None:intergenic | 30.0% | |
| CATTGTGATAAAGCAAGAAA+AGG | + | chr8.3:75296219-75296238 | MS.gene072283:CDS | 30.0% | |
| CCACATAACATAGTAGTAAT+AGG | + | chr8.3:75296700-75296719 | MS.gene072283:intron | 30.0% | |
| CCTATTACTACTATGTTATG+TGG | - | chr8.3:75296703-75296722 | None:intergenic | 30.0% | |
| CGGAAGAAAATGAAAGAAAA+CGG | + | chr8.3:75295611-75295630 | MS.gene072283:CDS | 30.0% | |
| GACATTAACTCATTCATTCT+GGG | + | chr8.3:75294698-75294717 | MS.gene072283:intron | 30.0% | |
| GACCTTCTATTTAACTGTAA+AGG | - | chr8.3:75296151-75296170 | None:intergenic | 30.0% | |
| GCATGTACCTAAAAAGATAT+TGG | + | chr8.3:75297172-75297191 | MS.gene072283:intron | 30.0% | |
| GTACTTAAAAGTCCAAAGTA+AGG | - | chr8.3:75297378-75297397 | None:intergenic | 30.0% | |
| TATGAAAACAAGCTATTCTG+AGG | - | chr8.3:75296041-75296060 | None:intergenic | 30.0% | |
| TCCAATGTTTATGTTCATGA+CGG | - | chr8.3:75296594-75296613 | None:intergenic | 30.0% | |
| TCTATCCTGTTAAAGAAATG+TGG | - | chr8.3:75297211-75297230 | None:intergenic | 30.0% | |
| TGAAAATGCAAGAATCAGAA+GGG | + | chr8.3:75296903-75296922 | MS.gene072283:CDS | 30.0% | |
| TTAAATAGAAGGTCTGTACT+TGG | + | chr8.3:75296157-75296176 | MS.gene072283:CDS | 30.0% | |
| TTCTCATTTCTTCTGTGATA+GGG | - | chr8.3:75294405-75294424 | None:intergenic | 30.0% | |
| TTCTTCCACATTTCTTTAAC+AGG | + | chr8.3:75297203-75297222 | MS.gene072283:intron | 30.0% | |
| TTTCTTTAACAGGATAGAGT+TGG | + | chr8.3:75297213-75297232 | MS.gene072283:intron | 30.0% | |
| ! | ACTTTTGTGGTTGTATAAAC+AGG | - | chr8.3:75296372-75296391 | None:intergenic | 30.0% |
| ! | AGCAACTTTTCATTCACTTT+TGG | - | chr8.3:75293853-75293872 | None:intergenic | 30.0% |
| ! | CTTTTCTTGCTTTATCACAA+TGG | - | chr8.3:75296221-75296240 | None:intergenic | 30.0% |
| ! | GAATGAAAGCACAGTATTTA+AGG | + | chr8.3:75294422-75294441 | MS.gene072283:CDS | 30.0% |
| ! | GTTAGTTGTTATTATCGGTA+CGG | + | chr8.3:75296756-75296775 | MS.gene072283:intron | 30.0% |
| ! | TAGCGCAACTTATAGATTTT+TGG | - | chr8.3:75295418-75295437 | None:intergenic | 30.0% |
| ! | TGTTATGTGGAGAAATTTTC+AGG | - | chr8.3:75296690-75296709 | None:intergenic | 30.0% |
| ! | TTCCTGTATTTTTCTTCCTT+AGG | - | chr8.3:75296973-75296992 | None:intergenic | 30.0% |
| !! | AATCTCTTGGTAGTTCTAAA+GGG | + | chr8.3:75296093-75296112 | MS.gene072283:intron | 30.0% |
| !! | ACTTTACAAGCCAGTTTTAT+AGG | - | chr8.3:75294646-75294665 | None:intergenic | 30.0% |
| !! | ATACACTAGAAGTGTTTCAA+AGG | - | chr8.3:75296929-75296948 | None:intergenic | 30.0% |
| !! | ATTCATTCTGGGATTCTTAA+CGG | + | chr8.3:75294709-75294728 | MS.gene072283:intron | 30.0% |
| !! | CTTTACAAGCCAGTTTTATA+GGG | - | chr8.3:75294645-75294664 | None:intergenic | 30.0% |
| !! | GTAGTTCTAAAGGGTTTAAA+TGG | + | chr8.3:75296102-75296121 | MS.gene072283:intron | 30.0% |
| !! | TTCTTTTTCTGCTTTTCTCA+AGG | - | chr8.3:75295737-75295756 | None:intergenic | 30.0% |
| !! | TTTACAAGCCAGTTTTATAG+GGG | - | chr8.3:75294644-75294663 | None:intergenic | 30.0% |
| !!! | GTTTTGGAAAATGTCTTACT+TGG | - | chr8.3:75297020-75297039 | None:intergenic | 30.0% |
| AAGAAGAAGAACAAAGAGCT+AGG | + | chr8.3:75295752-75295771 | MS.gene072283:CDS | 35.0% | |
| AAGGCTAAATTCCTGACAAT+AGG | - | chr8.3:75295718-75295737 | None:intergenic | 35.0% | |
| AATAGGCAATAACAGCTTAG+AGG | + | chr8.3:75294162-75294181 | MS.gene072283:intron | 35.0% | |
| ACATGTCTATCAGAAACCTA+CGG | - | chr8.3:75296738-75296757 | None:intergenic | 35.0% | |
| ACCGTCATGAACATAAACAT+TGG | + | chr8.3:75296590-75296609 | MS.gene072283:intron | 35.0% | |
| AGATATTGATGAGATTCCGT+TGG | + | chr8.3:75294222-75294241 | MS.gene072283:CDS | 35.0% | |
| AGGCTAAATTCCTGACAATA+GGG | - | chr8.3:75295717-75295736 | None:intergenic | 35.0% | |
| AGGTATTCAGCATAGGTATA+TGG | + | chr8.3:75295021-75295040 | MS.gene072283:intron | 35.0% | |
| ATCAGGTAAGAAACTTCTTG+AGG | + | chr8.3:75295576-75295595 | MS.gene072283:CDS | 35.0% | |
| ATTCAGCATAGGTATATGGT+AGG | + | chr8.3:75295025-75295044 | MS.gene072283:intron | 35.0% | |
| CTTAAACATAACTCTTGGCA+TGG | + | chr8.3:75296514-75296533 | MS.gene072283:intron | 35.0% | |
| CTTGTATCTTCCTAGTGAAA+AGG | + | chr8.3:75297296-75297315 | MS.gene072283:CDS | 35.0% | |
| GAAACACTTCTAGTGTATGT+TGG | + | chr8.3:75296931-75296950 | MS.gene072283:CDS | 35.0% | |
| GAAGAATTTACCAAAGTCTC+AGG | + | chr8.3:75295001-75295020 | MS.gene072283:intron | 35.0% | |
| GATAGAGTTGGAAGTTTAGA+TGG | + | chr8.3:75297225-75297244 | MS.gene072283:CDS | 35.0% | |
| GCAATGACAAATCCTTACTT+TGG | + | chr8.3:75297363-75297382 | MS.gene072283:CDS | 35.0% | |
| GTATAAGCCAATCAAAGAAC+TGG | - | chr8.3:75295914-75295933 | None:intergenic | 35.0% | |
| GTGAAAATGCAAGAATCAGA+AGG | + | chr8.3:75296902-75296921 | MS.gene072283:CDS | 35.0% | |
| GTGATGAAGCAAATATAAGG+AGG | - | chr8.3:75294918-75294937 | None:intergenic | 35.0% | |
| TAACTCAACCCCTATAAAAC+TGG | + | chr8.3:75294633-75294652 | MS.gene072283:intron | 35.0% | |
| TCTCTATGATAGTTGAGAGA+AGG | - | chr8.3:75294457-75294476 | None:intergenic | 35.0% | |
| TTAACGGTCTGTGTCTATAT+TGG | + | chr8.3:75294725-75294744 | MS.gene072283:intron | 35.0% | |
| TTGGACTAAATAGCACATGA+TGG | + | chr8.3:75295266-75295285 | MS.gene072283:intron | 35.0% | |
| ! | ACATTTGCTTGGCTTTCTAA+AGG | - | chr8.3:75296187-75296206 | None:intergenic | 35.0% |
| ! | GTTTATGTTCATGACGGTTT+TGG | - | chr8.3:75296588-75296607 | None:intergenic | 35.0% |
| ! | TCGATCAGTGTTGTTAACTA+CGG | + | chr8.3:75295164-75295183 | MS.gene072283:intron | 35.0% |
| !! | AGTTTTATAGGGGTTGAGTT+AGG | - | chr8.3:75294634-75294653 | None:intergenic | 35.0% |
| !! | CAATCTCTTGGTAGTTCTAA+AGG | + | chr8.3:75296092-75296111 | MS.gene072283:intron | 35.0% |
| !! | CAATGGTATGATTTTAGGAG+AGG | + | chr8.3:75295548-75295567 | MS.gene072283:intron | 35.0% |
| !! | TTTTAGGAGAGGATTCAATC+AGG | + | chr8.3:75295559-75295578 | MS.gene072283:intron | 35.0% |
| AAATGGCATTTCCACATGCA+AGG | + | chr8.3:75293887-75293906 | MS.gene072283:CDS | 40.0% | |
| AACAAGTGCTAGTGTAGTGT+CGG | - | chr8.3:75294518-75294537 | None:intergenic | 40.0% | |
| AAGTCTCAGGTATTCAGCAT+AGG | + | chr8.3:75295014-75295033 | MS.gene072283:intron | 40.0% | |
| AATGGCATTTCCACATGCAA+GGG | + | chr8.3:75293888-75293907 | MS.gene072283:CDS | 40.0% | |
| AGAAACTTCTTGAGGCAAAG+CGG | + | chr8.3:75295584-75295603 | MS.gene072283:CDS | 40.0% | |
| AGACTACTTGAGAGAGCTTA+TGG | + | chr8.3:75295963-75295982 | MS.gene072283:intron | 40.0% | |
| AGAGGATGCTATAACTTGGA+TGG | + | chr8.3:75294180-75294199 | MS.gene072283:CDS | 40.0% | |
| AGAGTTGGAAGTTTAGATGG+AGG | + | chr8.3:75297228-75297247 | MS.gene072283:CDS | 40.0% | |
| AGCACTTGAGAGAATGTTTG+AGG | + | chr8.3:75296394-75296413 | MS.gene072283:CDS | 40.0% | |
| ATGCTGAATACCTGAGACTT+TGG | - | chr8.3:75295014-75295033 | None:intergenic | 40.0% | |
| ATGGAACTACTAAGTTCAGC+TGG | + | chr8.3:75297324-75297343 | MS.gene072283:CDS | 40.0% | |
| CAAGAAACTAGAGCAGGATA+AGG | + | chr8.3:75295786-75295805 | MS.gene072283:CDS | 40.0% | |
| CACTATAGACTATAGCGTAG+TGG | - | chr8.3:75295317-75295336 | None:intergenic | 40.0% | |
| CGCTATAGTCTATAGTGCTT+TGG | + | chr8.3:75295320-75295339 | MS.gene072283:intron | 40.0% | |
| GCTTAGAGGATGCTATAACT+TGG | + | chr8.3:75294176-75294195 | MS.gene072283:CDS | 40.0% | |
| GCTTGAAGACCTTGAAGAAA+TGG | + | chr8.3:75293870-75293889 | MS.gene072283:CDS | 40.0% | |
| GTAGAGTTTCTTGAGCTATG+TGG | + | chr8.3:75297252-75297271 | MS.gene072283:CDS | 40.0% | |
| GTTTGCACCAGTTCTTTGAT+TGG | + | chr8.3:75295904-75295923 | MS.gene072283:intron | 40.0% | |
| TCCTAGTGAAAAGGTTGACA+TGG | + | chr8.3:75297305-75297324 | MS.gene072283:CDS | 40.0% | |
| TCTATCAGAAACCTACGGAA+AGG | - | chr8.3:75296733-75296752 | None:intergenic | 40.0% | |
| TCTTCTGTGATAGGGAATGA+TGG | - | chr8.3:75294397-75294416 | None:intergenic | 40.0% | |
| TCTTGCTTTATCACAATGGC+TGG | - | chr8.3:75296217-75296236 | None:intergenic | 40.0% | |
| ! | CAATGCCCAATTCTAAGAAC+CGG | - | chr8.3:75294610-75294629 | None:intergenic | 40.0% |
| ! | CTACGGATTGCCGAAAATAA+TGG | + | chr8.3:75295181-75295200 | MS.gene072283:intron | 40.0% |
| ! | GCACAAGAAGCACAATTCTT+AGG | - | chr8.3:75294059-75294078 | None:intergenic | 40.0% |
| ! | GTGGAAATGCCATTTCTTCA+AGG | - | chr8.3:75293882-75293901 | None:intergenic | 40.0% |
| ! | TATCCTGCTCTAGTTTCTTG+AGG | - | chr8.3:75295786-75295805 | None:intergenic | 40.0% |
| ! | TCCATGTCAACCTTTTCACT+AGG | - | chr8.3:75297309-75297328 | None:intergenic | 40.0% |
| ! | TCTCAAGTGCTCAACTTTTG+TGG | - | chr8.3:75296385-75296404 | None:intergenic | 40.0% |
| !! | AAACAAGCTATTCTGAGGTG+AGG | - | chr8.3:75296036-75296055 | None:intergenic | 40.0% |
| !! | ACAAGAGCACTGTACTATTC+TGG | + | chr8.3:75293913-75293932 | MS.gene072283:CDS | 40.0% |
| !! | AGGATGTGTTGACTACTCAT+CGG | - | chr8.3:75296670-75296689 | None:intergenic | 40.0% |
| !!! | CTATGTGGTTTTGAGAGAAG+TGG | + | chr8.3:75297267-75297286 | MS.gene072283:CDS | 40.0% |
| CATATTGGATGTGGAGTCGT+AGG | + | chr8.3:75297044-75297063 | MS.gene072283:intron | 45.0% | |
| CATCCTCAAGAAACTAGAGC+AGG | + | chr8.3:75295780-75295799 | MS.gene072283:CDS | 45.0% | |
| CGGTTCTTAGAATTGGGCAT+TGG | + | chr8.3:75294608-75294627 | MS.gene072283:intron | 45.0% | |
| CGTGTCCGGTTCTTAGAATT+GGG | + | chr8.3:75294602-75294621 | MS.gene072283:intron | 45.0% | |
| CTCATGATTGCCCTATTGTC+AGG | + | chr8.3:75295704-75295723 | MS.gene072283:intron | 45.0% | |
| CTGGTGATCTCACATTTGCT+TGG | - | chr8.3:75296198-75296217 | None:intergenic | 45.0% | |
| GTCTGTGTTTATGTCGTGTC+CGG | + | chr8.3:75294588-75294607 | MS.gene072283:intron | 45.0% | |
| TCGTGTCCGGTTCTTAGAAT+TGG | + | chr8.3:75294601-75294620 | MS.gene072283:intron | 45.0% | |
| TGCTTTGGCGCTGCTATATA+TGG | + | chr8.3:75295335-75295354 | MS.gene072283:intron | 45.0% | |
| ! | GTTCCTATGAAGCACCAACA+CGG | - | chr8.3:75296648-75296667 | None:intergenic | 45.0% |
| ! | TGTGATAGGGAATGATGGAG+AGG | - | chr8.3:75294392-75294411 | None:intergenic | 45.0% |
| !! | TGAGGGTGTGAAAGTACCAA+CGG | - | chr8.3:75294241-75294260 | None:intergenic | 45.0% |
| !!! | TTTTTTTTTTTTTTTTTGTA+AGG | + | chr8.3:75295675-75295694 | MS.gene072283:intron | 5.0% |
| GTCTCTCAAGCGTGAACACA+AGG | + | chr8.3:75296416-75296435 | MS.gene072283:CDS | 50.0% | |
| TAGGATGCATGCCTTTCCGT+AGG | + | chr8.3:75296719-75296738 | MS.gene072283:intron | 50.0% | |
| ! | ACACCGTGTTGGTGCTTCAT+AGG | + | chr8.3:75296642-75296661 | MS.gene072283:intron | 50.0% |
| !! | TCTTGAGGCAAAGCGGATTG+CGG | + | chr8.3:75295591-75295610 | MS.gene072283:CDS | 50.0% |
| GCTCTTGTTGCCCTTGCATG+TGG | - | chr8.3:75293901-75293920 | None:intergenic | 55.0% | |
| ACGACACGTCGACACCGTGT+TGG | + | chr8.3:75296631-75296650 | MS.gene072283:intron | 60.0% | |
| GCAGGGAACAAGTGCGAGAG+AGG | + | chr8.3:75294790-75294809 | MS.gene072283:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 75293841 | 75297404 | 75293841 | ID=MS.gene072283 |
| chr8.3 | mRNA | 75293841 | 75297404 | 75293841 | ID=MS.gene072283.t1;Parent=MS.gene072283 |
| chr8.3 | exon | 75293841 | 75293934 | 75293841 | ID=MS.gene072283.t1.exon1;Parent=MS.gene072283.t1 |
| chr8.3 | CDS | 75293841 | 75293934 | 75293841 | ID=cds.MS.gene072283.t1;Parent=MS.gene072283.t1 |
| chr8.3 | exon | 75294167 | 75294243 | 75294167 | ID=MS.gene072283.t1.exon2;Parent=MS.gene072283.t1 |
| chr8.3 | CDS | 75294167 | 75294243 | 75294167 | ID=cds.MS.gene072283.t1;Parent=MS.gene072283.t1 |
| chr8.3 | exon | 75294364 | 75294443 | 75294364 | ID=MS.gene072283.t1.exon3;Parent=MS.gene072283.t1 |
| chr8.3 | CDS | 75294364 | 75294443 | 75294364 | ID=cds.MS.gene072283.t1;Parent=MS.gene072283.t1 |
| chr8.3 | exon | 75294794 | 75294848 | 75294794 | ID=MS.gene072283.t1.exon4;Parent=MS.gene072283.t1 |
| chr8.3 | CDS | 75294794 | 75294848 | 75294794 | ID=cds.MS.gene072283.t1;Parent=MS.gene072283.t1 |
| chr8.3 | exon | 75295565 | 75295632 | 75295565 | ID=MS.gene072283.t1.exon5;Parent=MS.gene072283.t1 |
| chr8.3 | CDS | 75295565 | 75295632 | 75295565 | ID=cds.MS.gene072283.t1;Parent=MS.gene072283.t1 |
| chr8.3 | exon | 75295726 | 75295807 | 75295726 | ID=MS.gene072283.t1.exon6;Parent=MS.gene072283.t1 |
| chr8.3 | CDS | 75295726 | 75295807 | 75295726 | ID=cds.MS.gene072283.t1;Parent=MS.gene072283.t1 |
| chr8.3 | exon | 75296157 | 75296240 | 75296157 | ID=MS.gene072283.t1.exon7;Parent=MS.gene072283.t1 |
| chr8.3 | CDS | 75296157 | 75296240 | 75296157 | ID=cds.MS.gene072283.t1;Parent=MS.gene072283.t1 |
| chr8.3 | exon | 75296360 | 75296437 | 75296360 | ID=MS.gene072283.t1.exon8;Parent=MS.gene072283.t1 |
| chr8.3 | CDS | 75296360 | 75296437 | 75296360 | ID=cds.MS.gene072283.t1;Parent=MS.gene072283.t1 |
| chr8.3 | exon | 75296901 | 75297020 | 75296901 | ID=MS.gene072283.t1.exon9;Parent=MS.gene072283.t1 |
| chr8.3 | CDS | 75296901 | 75297020 | 75296901 | ID=cds.MS.gene072283.t1;Parent=MS.gene072283.t1 |
| chr8.3 | exon | 75297225 | 75297404 | 75297225 | ID=MS.gene072283.t1.exon10;Parent=MS.gene072283.t1 |
| chr8.3 | CDS | 75297225 | 75297404 | 75297225 | ID=cds.MS.gene072283.t1;Parent=MS.gene072283.t1 |
| Gene Sequence |
| Protein sequence |
