Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072517.t1 | XP_003626243.1 | 94.4 | 319 | 18 | 0 | 1 | 319 | 1 | 319 | 1.20E-181 | 645.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072517.t1 | I6YGS0 | 37.2 | 320 | 181 | 7 | 7 | 316 | 7 | 316 | 1.5e-55 | 218.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072517.t1 | A2Q320 | 94.4 | 319 | 18 | 0 | 1 | 319 | 1 | 319 | 8.8e-182 | 645.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene072517 | MS.gene066361 | PPI |
| MS.gene072517 | MS.gene22955 | PPI |
| MS.gene072517 | MS.gene071500 | PPI |
| MS.gene035367 | MS.gene072517 | PPI |
| MS.gene072517 | MS.gene041604 | PPI |
| MS.gene072517 | MS.gene77823 | PPI |
| MS.gene072517 | MS.gene025707 | PPI |
| MS.gene072517 | MS.gene035369 | PPI |
| MS.gene072517 | MS.gene76453 | PPI |
| MS.gene072517 | MS.gene035373 | PPI |
| MS.gene072517 | MS.gene07001 | PPI |
| MS.gene066360 | MS.gene072517 | PPI |
| MS.gene072517 | MS.gene012063 | PPI |
| MS.gene89620 | MS.gene072517 | PPI |
| MS.gene072517 | MS.gene035371 | PPI |
| MS.gene072517 | MS.gene071502 | PPI |
| MS.gene072517 | MS.gene071504 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072517.t1 | MTR_7g113020 | 94.357 | 319 | 18 | 0 | 1 | 319 | 1 | 319 | 0.0 | 629 |
| MS.gene072517.t1 | MTR_7g112615 | 91.850 | 319 | 26 | 0 | 1 | 319 | 1 | 319 | 0.0 | 617 |
| MS.gene072517.t1 | MTR_7g113050 | 89.969 | 319 | 32 | 0 | 1 | 319 | 1 | 319 | 0.0 | 610 |
| MS.gene072517.t1 | MTR_7g113030 | 89.655 | 319 | 33 | 0 | 1 | 319 | 1 | 319 | 0.0 | 606 |
| MS.gene072517.t1 | MTR_7g112620 | 89.342 | 319 | 34 | 0 | 1 | 319 | 1 | 319 | 0.0 | 605 |
| MS.gene072517.t1 | MTR_7g112960 | 77.882 | 321 | 67 | 2 | 1 | 319 | 1 | 319 | 0.0 | 526 |
| MS.gene072517.t1 | MTR_7g112963 | 78.505 | 321 | 65 | 2 | 1 | 319 | 1 | 319 | 0.0 | 525 |
| MS.gene072517.t1 | MTR_7g112970 | 76.176 | 319 | 73 | 2 | 1 | 319 | 1 | 316 | 0.0 | 520 |
| MS.gene072517.t1 | MTR_4g005160 | 73.375 | 323 | 81 | 3 | 1 | 319 | 1 | 322 | 0.0 | 510 |
| MS.gene072517.t1 | MTR_7g112615 | 91.176 | 238 | 21 | 0 | 1 | 238 | 1 | 238 | 2.95e-166 | 462 |
| MS.gene072517.t1 | MTR_7g113050 | 89.496 | 238 | 25 | 0 | 1 | 238 | 1 | 238 | 8.26e-165 | 458 |
| MS.gene072517.t1 | MTR_7g113010 | 72.085 | 283 | 75 | 2 | 1 | 281 | 1 | 281 | 2.95e-152 | 439 |
| MS.gene072517.t1 | MTR_4g120240 | 62.617 | 321 | 116 | 3 | 1 | 319 | 37 | 355 | 5.83e-148 | 420 |
| MS.gene072517.t1 | MTR_7g108825 | 61.129 | 319 | 122 | 2 | 1 | 319 | 1 | 317 | 2.22e-143 | 407 |
| MS.gene072517.t1 | MTR_7g112615 | 93.082 | 159 | 11 | 0 | 1 | 159 | 1 | 159 | 5.59e-108 | 312 |
| MS.gene072517.t1 | MTR_8g076680 | 47.335 | 319 | 164 | 3 | 1 | 319 | 3 | 317 | 1.13e-105 | 311 |
| MS.gene072517.t1 | MTR_7g108825 | 59.244 | 238 | 95 | 2 | 1 | 238 | 1 | 236 | 9.02e-100 | 293 |
| MS.gene072517.t1 | MTR_7g112910 | 59.438 | 249 | 46 | 5 | 72 | 319 | 1 | 195 | 5.88e-92 | 272 |
| MS.gene072517.t1 | MTR_1g083480 | 75.472 | 159 | 35 | 2 | 1 | 156 | 1 | 158 | 4.86e-87 | 259 |
| MS.gene072517.t1 | MTR_8g076680 | 47.899 | 238 | 122 | 2 | 1 | 238 | 3 | 238 | 3.54e-81 | 246 |
| MS.gene072517.t1 | MTR_2g090240 | 36.449 | 321 | 190 | 7 | 1 | 318 | 1 | 310 | 1.50e-66 | 211 |
| MS.gene072517.t1 | MTR_4g089060 | 36.137 | 321 | 190 | 6 | 1 | 318 | 1 | 309 | 1.87e-64 | 206 |
| MS.gene072517.t1 | MTR_2g090245 | 35.202 | 321 | 194 | 7 | 1 | 318 | 1 | 310 | 5.40e-64 | 205 |
| MS.gene072517.t1 | MTR_4g089040 | 35.514 | 321 | 192 | 6 | 1 | 318 | 1 | 309 | 3.91e-62 | 200 |
| MS.gene072517.t1 | MTR_3g024250 | 81.132 | 106 | 20 | 0 | 47 | 152 | 2 | 107 | 2.88e-59 | 186 |
| MS.gene072517.t1 | MTR_4g089060 | 33.621 | 348 | 189 | 7 | 1 | 318 | 1 | 336 | 2.96e-59 | 193 |
| MS.gene072517.t1 | MTR_4g089060 | 38.627 | 233 | 134 | 3 | 1 | 231 | 1 | 226 | 1.99e-53 | 175 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072517.t1 | AT3G05600 | 63.889 | 324 | 112 | 4 | 1 | 319 | 1 | 324 | 3.21e-157 | 442 |
| MS.gene072517.t1 | AT4G02340 | 59.190 | 321 | 124 | 4 | 1 | 319 | 1 | 316 | 6.83e-143 | 406 |
| MS.gene072517.t1 | AT2G26740 | 63.043 | 322 | 112 | 4 | 4 | 319 | 1 | 321 | 1.32e-134 | 385 |
| MS.gene072517.t1 | AT4G15960 | 54.154 | 325 | 142 | 3 | 1 | 319 | 51 | 374 | 6.22e-129 | 373 |
| MS.gene072517.t1 | AT2G26750 | 61.059 | 321 | 119 | 4 | 4 | 319 | 1 | 320 | 1.70e-128 | 369 |
| MS.gene072517.t1 | AT3G05600 | 64.609 | 243 | 81 | 4 | 1 | 238 | 1 | 243 | 2.48e-115 | 333 |
| MS.gene072517.t1 | AT4G15955 | 50.000 | 326 | 125 | 4 | 5 | 319 | 6 | 304 | 8.23e-110 | 322 |
| MS.gene072517.t1 | AT3G51000 | 45.566 | 327 | 157 | 6 | 3 | 319 | 4 | 319 | 2.47e-101 | 300 |
| MS.gene072517.t1 | AT4G15955 | 58.621 | 174 | 62 | 2 | 5 | 168 | 6 | 179 | 4.52e-71 | 218 |
| MS.gene072517.t1 | AT4G15955 | 58.182 | 165 | 59 | 2 | 5 | 159 | 6 | 170 | 1.72e-66 | 206 |
Find 86 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATAGGCTTTGATTCTTTC+AGG | 0.119767 | 7.4:+4046880 | None:intergenic |
| CAAGGAAGATGTGCCGAATT+TGG | 0.238850 | 7.4:-4045835 | MS.gene072517:CDS |
| TTATTATATATGCAGATTTC+AGG | 0.249339 | 7.4:-4046779 | MS.gene072517:intron |
| AGCCAAGTGGGCAAGGTGTC+AGG | 0.263626 | 7.4:+4046206 | None:intergenic |
| GTCTCCAAATTTGAGAAAAC+TGG | 0.263633 | 7.4:-4046158 | MS.gene072517:CDS |
| GAAATTCATTACAGGTGATT+TGG | 0.277422 | 7.4:-4045910 | MS.gene072517:CDS |
| TTAGGGTTTCTACGCGTAAA+TGG | 0.282040 | 7.4:+4046844 | None:intergenic |
| TGCAAAGATACCAACCAATT+AGG | 0.292935 | 7.4:+4046911 | None:intergenic |
| CATTACAGGTGATTTGGATA+TGG | 0.296487 | 7.4:-4045904 | MS.gene072517:CDS |
| ATACTTCCCAAGGGAGAGTT+TGG | 0.318913 | 7.4:-4046251 | MS.gene072517:CDS |
| CATGATTGGGGTGCCCTAAT+TGG | 0.343119 | 7.4:-4046925 | MS.gene072517:CDS |
| CCTAAAATCAGAACTGTTGA+TGG | 0.347446 | 7.4:-4046826 | MS.gene072517:CDS |
| CCCCTGACACCTTGCCCACT+TGG | 0.359209 | 7.4:-4046208 | MS.gene072517:CDS |
| TGTTTCTTGTAGCTCATGAT+TGG | 0.362025 | 7.4:-4046939 | MS.gene072517:CDS |
| GTCCTCACAACTCGCAAAAC+TGG | 0.362682 | 7.4:-4046281 | MS.gene072517:CDS |
| GATGGCATGCGTGCTGCTTA+TGG | 0.363820 | 7.4:-4046808 | MS.gene072517:CDS |
| CGCCAAGAGTACCAGAGTTC+AGG | 0.381681 | 7.4:+4047123 | None:intergenic |
| CGCCACCAGATTGCTGCTCT+CGG | 0.393921 | 7.4:-4047102 | MS.gene072517:CDS |
| CCCAAGGGAGAGTTTGGAAC+TGG | 0.394498 | 7.4:-4046245 | MS.gene072517:CDS |
| GTTTCTTGTAGCTCATGATT+GGG | 0.395980 | 7.4:-4046938 | MS.gene072517:CDS |
| GCAAAGATACCAACCAATTA+GGG | 0.397770 | 7.4:+4046912 | None:intergenic |
| ACAATCACTTCCTCCAAATT+CGG | 0.398594 | 7.4:+4045822 | None:intergenic |
| TCACCGTAGCCACGAAGATC+TGG | 0.407123 | 7.4:+4047054 | None:intergenic |
| GAGGAAGTGATTGTGCAAAA+AGG | 0.414023 | 7.4:-4045813 | MS.gene072517:CDS |
| GGCAAGGTGTCAGGGGTATC+CGG | 0.423975 | 7.4:+4046215 | None:intergenic |
| CCTGTTGTCCTGTTCCTTCA+CGG | 0.424309 | 7.4:-4047150 | MS.gene072517:CDS |
| GTGCCTGTGAAATTCATTAC+AGG | 0.432209 | 7.4:-4045918 | MS.gene072517:CDS |
| CATAGGCTTTGATTCTTTCA+GGG | 0.432762 | 7.4:+4046881 | None:intergenic |
| CTAATTGTATTGCAGAAATT+GGG | 0.433325 | 7.4:-4045976 | MS.gene072517:intron |
| AACTCTCCCTTGGGAAGTAT+TGG | 0.434048 | 7.4:+4046254 | None:intergenic |
| TTCCTGAACTCTGGTACTCT+TGG | 0.435109 | 7.4:-4047125 | MS.gene072517:CDS |
| GAGAGCCGAGAGCAGCAATC+TGG | 0.444182 | 7.4:+4047097 | None:intergenic |
| TCCAGTTCCAAACTCTCCCT+TGG | 0.447351 | 7.4:+4046244 | None:intergenic |
| TTTGAGAAAACTGGCTTCAC+CGG | 0.453864 | 7.4:-4046149 | MS.gene072517:CDS |
| CAGGAAAGCCGTGAAGGAAC+AGG | 0.460850 | 7.4:+4047142 | None:intergenic |
| GTTGCTCTCATCGACTTGCT+TGG | 0.464883 | 7.4:-4046973 | MS.gene072517:CDS |
| ATTGCTGCTCTCGGCTCTCT+CGG | 0.478105 | 7.4:-4047093 | MS.gene072517:CDS |
| CCGTGAAGGAACAGGACAAC+AGG | 0.481846 | 7.4:+4047150 | None:intergenic |
| AAAATGCATATTGCTGAGAA+AGG | 0.485302 | 7.4:-4047183 | MS.gene072517:CDS |
| TATCCATGGTGGAGGATTCA+AGG | 0.490724 | 7.4:-4045853 | MS.gene072517:CDS |
| CCAGTTCCAAACTCTCCCTT+GGG | 0.499868 | 7.4:+4046245 | None:intergenic |
| TTCACGGCTTTCCTGAACTC+TGG | 0.502205 | 7.4:-4047134 | MS.gene072517:CDS |
| GCTCCAGATCTTCGTGGCTA+CGG | 0.504735 | 7.4:-4047057 | MS.gene072517:CDS |
| TCTCCCTTGGGAAGTATTGG+AGG | 0.509088 | 7.4:+4046257 | None:intergenic |
| TTCTGTGAGCCAAGTGGGCA+AGG | 0.510522 | 7.4:+4046199 | None:intergenic |
| CACAGAACAGTGGAAGTGAA+TGG | 0.515742 | 7.4:-4047210 | MS.gene072517:CDS |
| GTTTGGAACTGGATTCAATC+CGG | 0.516376 | 7.4:-4046234 | MS.gene072517:CDS |
| GCTGTTGCTCCAGATCTTCG+TGG | 0.527210 | 7.4:-4047063 | MS.gene072517:CDS |
| TTCAACAATCAAGAAGCTGC+AGG | 0.535462 | 7.4:-4045780 | MS.gene072517:CDS |
| TCTATAGTAATTCAATCCTC+CGG | 0.539260 | 7.4:+4046130 | None:intergenic |
| TTATCTATATTACAGGAACC+TGG | 0.544877 | 7.4:-4046356 | MS.gene072517:intron |
| ATTGCTGAGAAAGGAAAAGA+AGG | 0.548522 | 7.4:-4047174 | MS.gene072517:CDS |
| CTACGGTGACACCGATGCTC+CGG | 0.550138 | 7.4:-4047040 | MS.gene072517:CDS |
| GCCAAGTGGGCAAGGTGTCA+GGG | 0.551540 | 7.4:+4046207 | None:intergenic |
| AATAGAAGCTGAGATAGCTC+AGG | 0.557396 | 7.4:-4046330 | MS.gene072517:CDS |
| GCGTAGCTGCTAATCGAAGC+CGG | 0.557719 | 7.4:+4047021 | None:intergenic |
| TCATCTTCTGTGAGCCAAGT+GGG | 0.568184 | 7.4:+4046194 | None:intergenic |
| AGCCGAGAGCAGCAATCTGG+TGG | 0.568882 | 7.4:+4047100 | None:intergenic |
| TCACCTGTAATGAATTTCAC+AGG | 0.570947 | 7.4:+4045915 | None:intergenic |
| TGGTCCTCCAATACTTCCCA+AGG | 0.570977 | 7.4:-4046261 | MS.gene072517:CDS |
| ATTGGGGTGCCCTAATTGGT+TGG | 0.573060 | 7.4:-4046921 | MS.gene072517:CDS |
| GGAAGATGTGCCGAATTTGG+AGG | 0.573365 | 7.4:-4045832 | MS.gene072517:CDS |
| GCTAATCGAAGCCGGAGCAT+CGG | 0.580714 | 7.4:+4047029 | None:intergenic |
| AAGGAGTATATCCATGGTGG+AGG | 0.581533 | 7.4:-4045861 | MS.gene072517:CDS |
| TGGAACACTGAGACAAACAT+AGG | 0.583516 | 7.4:+4046864 | None:intergenic |
| TCAACAATCAAGAAGCTGCA+GGG | 0.590827 | 7.4:-4045779 | MS.gene072517:CDS |
| TTTCTTGTAGCTCATGATTG+GGG | 0.597857 | 7.4:-4046937 | MS.gene072517:CDS |
| ATGGAGTGGAGTGAAAATCA+AGG | 0.603056 | 7.4:-4045940 | MS.gene072517:CDS |
| GAGAAAACTGGCTTCACCGG+AGG | 0.603917 | 7.4:-4046146 | MS.gene072517:CDS |
| CAACAATCAAGAAGCTGCAG+GGG | 0.604727 | 7.4:-4045778 | MS.gene072517:CDS |
| TCTCATCGACTTGCTTGGTG+TGG | 0.620782 | 7.4:-4046968 | MS.gene072517:CDS |
| CATGTGAAGGAGTATATCCA+TGG | 0.624062 | 7.4:-4045867 | MS.gene072517:CDS |
| GTACACCTCGCCACATGTGA+AGG | 0.626457 | 7.4:-4045880 | MS.gene072517:CDS |
| CCAAGTGGGCAAGGTGTCAG+GGG | 0.627753 | 7.4:+4046208 | None:intergenic |
| AGAGTTCAGGAAAGCCGTGA+AGG | 0.628117 | 7.4:+4047136 | None:intergenic |
| GAGCTCACAGCACCATGGAG+TGG | 0.632984 | 7.4:-4045954 | MS.gene072517:CDS |
| TGGATATACTCCTTCACATG+TGG | 0.645588 | 7.4:+4045870 | None:intergenic |
| GAAGCTGAGATAGCTCAGGT+TGG | 0.661961 | 7.4:-4046326 | MS.gene072517:CDS |
| ATCATCTTCTGTGAGCCAAG+TGG | 0.662860 | 7.4:+4046193 | None:intergenic |
| ATACTCCTTCACATGTGGCG+AGG | 0.664549 | 7.4:+4045875 | None:intergenic |
| ATTGGGAGCTCACAGCACCA+TGG | 0.668315 | 7.4:-4045959 | MS.gene072517:CDS |
| AGGAATAGAACACAGAACAG+TGG | 0.676997 | 7.4:-4047220 | MS.gene072517:CDS |
| GAAGATCTGGAGCAACAGCA+CGG | 0.677123 | 7.4:+4047067 | None:intergenic |
| CTTCCTTGAATCCTCCACCA+TGG | 0.680547 | 7.4:+4045850 | None:intergenic |
| GGTCCTCCAATACTTCCCAA+GGG | 0.690564 | 7.4:-4046260 | MS.gene072517:CDS |
| GTGAAGGAGTATATCCATGG+TGG | 0.691244 | 7.4:-4045864 | MS.gene072517:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCAATCAATTATGTTAAT+CGG | + | chr7.4:4046260-4046279 | None:intergenic | 15.0% |
| !! | ATCAATTATTAAGAATTACT+AGG | + | chr7.4:4046233-4046252 | None:intergenic | 15.0% |
| !!! | GAATAATTTAACAAAGTATT+AGG | - | chr7.4:4046402-4046421 | MS.gene072517:intron | 15.0% |
| !!! | TTGTTTTTTATCTATATTAC+AGG | - | chr7.4:4046599-4046618 | MS.gene072517:intron | 15.0% |
| !! | AATGATTCCAAATATTATAC+TGG | + | chr7.4:4046519-4046538 | None:intergenic | 20.0% |
| !! | AGTTTAAATTATTCACAAAC+AGG | + | chr7.4:4046353-4046372 | None:intergenic | 20.0% |
| !! | ATATTTGTCGAAAACAATTA+TGG | + | chr7.4:4046893-4046912 | None:intergenic | 20.0% |
| !! | ATTACTAGGAATATTAGTTA+TGG | + | chr7.4:4046219-4046238 | None:intergenic | 20.0% |
| !! | GTTTGTGAATAATTTAAACT+AGG | - | chr7.4:4046353-4046372 | MS.gene072517:intron | 20.0% |
| !! | TTATTATATATGCAGATTTC+AGG | - | chr7.4:4046183-4046202 | MS.gene072517:CDS | 20.0% |
| !!! | ATAAATCAACTATCCTTTTT+GGG | - | chr7.4:4046911-4046930 | MS.gene072517:CDS | 20.0% |
| !!! | TATAAATCAACTATCCTTTT+TGG | - | chr7.4:4046910-4046929 | MS.gene072517:CDS | 20.0% |
| ! | ACTAATTGTATTGCAGAAAT+TGG | - | chr7.4:4046985-4047004 | MS.gene072517:CDS | 25.0% |
| ! | CTAATTGTATTGCAGAAATT+GGG | - | chr7.4:4046986-4047005 | MS.gene072517:CDS | 25.0% |
| ! | GTTTAACTGTCATTAGAATT+CGG | + | chr7.4:4046967-4046986 | None:intergenic | 25.0% |
| ! | TGATACATGAGAATTAAACA+AGG | - | chr7.4:4046431-4046450 | MS.gene072517:intron | 25.0% |
| !! | TAAATCAACTATCCTTTTTG+GGG | - | chr7.4:4046912-4046931 | MS.gene072517:CDS | 25.0% |
| AAAATGCATATTGCTGAGAA+AGG | - | chr7.4:4045779-4045798 | MS.gene072517:CDS | 30.0% | |
| GAAATTCATTACAGGTGATT+TGG | - | chr7.4:4047052-4047071 | MS.gene072517:CDS | 30.0% | |
| GAATTGCTATAATGGTAGAT+AGG | - | chr7.4:4046566-4046585 | MS.gene072517:intron | 30.0% | |
| TAATTAATCTCACGCTTCTA+TGG | - | chr7.4:4046284-4046303 | MS.gene072517:CDS | 30.0% | |
| TCTATAGTAATTCAATCCTC+CGG | + | chr7.4:4046835-4046854 | None:intergenic | 30.0% | |
| TCTTGTCAATTTAGATTGAG+TGG | - | chr7.4:4046461-4046480 | MS.gene072517:intron | 30.0% | |
| TGAAGTGAGAATTGCTATAA+TGG | - | chr7.4:4046558-4046577 | MS.gene072517:intron | 30.0% | |
| TTATCTATATTACAGGAACC+TGG | - | chr7.4:4046606-4046625 | MS.gene072517:intron | 30.0% | |
| !! | CATCAACAGTTCTGATTTTA+GGG | + | chr7.4:4046138-4046157 | None:intergenic | 30.0% |
| ACAATCACTTCCTCCAAATT+CGG | + | chr7.4:4047143-4047162 | None:intergenic | 35.0% | |
| ATTGCTGAGAAAGGAAAAGA+AGG | - | chr7.4:4045788-4045807 | MS.gene072517:CDS | 35.0% | |
| CCTAAAATCAGAACTGTTGA+TGG | - | chr7.4:4046136-4046155 | MS.gene072517:CDS | 35.0% | |
| GCAAAGATACCAACCAATTA+GGG | + | chr7.4:4046053-4046072 | None:intergenic | 35.0% | |
| GCACAAATATTTCCCCAAAA+AGG | + | chr7.4:4046927-4046946 | None:intergenic | 35.0% | |
| GTCTCCAAATTTGAGAAAAC+TGG | - | chr7.4:4046804-4046823 | MS.gene072517:CDS | 35.0% | |
| GTTTCTTGTAGCTCATGATT+GGG | - | chr7.4:4046024-4046043 | MS.gene072517:intron | 35.0% | |
| TCACCTGTAATGAATTTCAC+AGG | + | chr7.4:4047050-4047069 | None:intergenic | 35.0% | |
| TGCAAAGATACCAACCAATT+AGG | + | chr7.4:4046054-4046073 | None:intergenic | 35.0% | |
| TGGAGCTCCAGTATAATATT+TGG | - | chr7.4:4046509-4046528 | MS.gene072517:intron | 35.0% | |
| TGTTTCTTGTAGCTCATGAT+TGG | - | chr7.4:4046023-4046042 | MS.gene072517:intron | 35.0% | |
| TTTCTTGTAGCTCATGATTG+GGG | - | chr7.4:4046025-4046044 | MS.gene072517:intron | 35.0% | |
| ! | ACATAGGCTTTGATTCTTTC+AGG | + | chr7.4:4046085-4046104 | None:intergenic | 35.0% |
| ! | CATAGGCTTTGATTCTTTCA+GGG | + | chr7.4:4046084-4046103 | None:intergenic | 35.0% |
| ! | CATTACAGGTGATTTGGATA+TGG | - | chr7.4:4047058-4047077 | MS.gene072517:CDS | 35.0% |
| ! | GAAGCCAGTTTTCTCAAATT+TGG | + | chr7.4:4046811-4046830 | None:intergenic | 35.0% |
| ! | GATGATGGTGTGTTATGTTA+TGG | - | chr7.4:4046489-4046508 | MS.gene072517:intron | 35.0% |
| ! | GATTGAGTGGTTTTTGATGA+TGG | - | chr7.4:4046474-4046493 | MS.gene072517:intron | 35.0% |
| ! | TACGCATGTTTTCACATAGT+AGG | - | chr7.4:4045959-4045978 | MS.gene072517:CDS | 35.0% |
| !! | CCATCAACAGTTCTGATTTT+AGG | + | chr7.4:4046139-4046158 | None:intergenic | 35.0% |
| AATAGAAGCTGAGATAGCTC+AGG | - | chr7.4:4046632-4046651 | MS.gene072517:intron | 40.0% | |
| AGGAATAGAACACAGAACAG+TGG | - | chr7.4:4045742-4045761 | MS.gene072517:CDS | 40.0% | |
| ATGGAGTGGAGTGAAAATCA+AGG | - | chr7.4:4047022-4047041 | MS.gene072517:CDS | 40.0% | |
| GAGGAAGTGATTGTGCAAAA+AGG | - | chr7.4:4047149-4047168 | MS.gene072517:CDS | 40.0% | |
| GGAAATATTTGTGCAAGCAG+AGG | - | chr7.4:4046933-4046952 | MS.gene072517:CDS | 40.0% | |
| GTGCCTGTGAAATTCATTAC+AGG | - | chr7.4:4047044-4047063 | MS.gene072517:CDS | 40.0% | |
| TCAACAATCAAGAAGCTGCA+GGG | - | chr7.4:4047183-4047202 | MS.gene072517:CDS | 40.0% | |
| TGGAACACTGAGACAAACAT+AGG | + | chr7.4:4046101-4046120 | None:intergenic | 40.0% | |
| TGGATATACTCCTTCACATG+TGG | + | chr7.4:4047095-4047114 | None:intergenic | 40.0% | |
| TTAGGGTTTCTACGCGTAAA+TGG | + | chr7.4:4046121-4046140 | None:intergenic | 40.0% | |
| TTCAACAATCAAGAAGCTGC+AGG | - | chr7.4:4047182-4047201 | MS.gene072517:CDS | 40.0% | |
| ! | ATCTCAGCTTCTATTTTGCC+AGG | + | chr7.4:4046627-4046646 | None:intergenic | 40.0% |
| ! | CATGTGAAGGAGTATATCCA+TGG | - | chr7.4:4047095-4047114 | MS.gene072517:CDS | 40.0% |
| ! | GTTTGGAACTGGATTCAATC+CGG | - | chr7.4:4046728-4046747 | MS.gene072517:intron | 40.0% |
| ! | TTGATTTTCACTCCACTCCA+TGG | + | chr7.4:4047023-4047042 | None:intergenic | 40.0% |
| ! | TTTGAGAAAACTGGCTTCAC+CGG | - | chr7.4:4046813-4046832 | MS.gene072517:CDS | 40.0% |
| ATACTTCCCAAGGGAGAGTT+TGG | - | chr7.4:4046711-4046730 | MS.gene072517:intron | 45.0% | |
| ATCATCTTCTGTGAGCCAAG+TGG | + | chr7.4:4046772-4046791 | None:intergenic | 45.0% | |
| CAACAATCAAGAAGCTGCAG+GGG | - | chr7.4:4047184-4047203 | MS.gene072517:CDS | 45.0% | |
| CAAGGAAGATGTGCCGAATT+TGG | - | chr7.4:4047127-4047146 | MS.gene072517:CDS | 45.0% | |
| CACAGAACAGTGGAAGTGAA+TGG | - | chr7.4:4045752-4045771 | MS.gene072517:CDS | 45.0% | |
| TCATCTTCTGTGAGCCAAGT+GGG | + | chr7.4:4046771-4046790 | None:intergenic | 45.0% | |
| TTCCTGAACTCTGGTACTCT+TGG | - | chr7.4:4045837-4045856 | MS.gene072517:CDS | 45.0% | |
| ! | AACTCTCCCTTGGGAAGTAT+TGG | + | chr7.4:4046711-4046730 | None:intergenic | 45.0% |
| ! | AAGGAGTATATCCATGGTGG+AGG | - | chr7.4:4047101-4047120 | MS.gene072517:CDS | 45.0% |
| ! | GTGAAGGAGTATATCCATGG+TGG | - | chr7.4:4047098-4047117 | MS.gene072517:CDS | 45.0% |
| ! | TATCCATGGTGGAGGATTCA+AGG | - | chr7.4:4047109-4047128 | MS.gene072517:CDS | 45.0% |
| AGAGTTCAGGAAAGCCGTGA+AGG | + | chr7.4:4045829-4045848 | None:intergenic | 50.0% | |
| ATACTCCTTCACATGTGGCG+AGG | + | chr7.4:4047090-4047109 | None:intergenic | 50.0% | |
| CCAGTTCCAAACTCTCCCTT+GGG | + | chr7.4:4046720-4046739 | None:intergenic | 50.0% | |
| CCTGTTGTCCTGTTCCTTCA+CGG | - | chr7.4:4045812-4045831 | MS.gene072517:CDS | 50.0% | |
| CTCACGCTTCTATGGTGTGT+TGG | - | chr7.4:4046292-4046311 | MS.gene072517:CDS | 50.0% | |
| CTTCCTTGAATCCTCCACCA+TGG | + | chr7.4:4047115-4047134 | None:intergenic | 50.0% | |
| GAAGCTGAGATAGCTCAGGT+TGG | - | chr7.4:4046636-4046655 | MS.gene072517:intron | 50.0% | |
| GGAAGATGTGCCGAATTTGG+AGG | - | chr7.4:4047130-4047149 | MS.gene072517:CDS | 50.0% | |
| GGTCCTCCAATACTTCCCAA+GGG | - | chr7.4:4046702-4046721 | MS.gene072517:intron | 50.0% | |
| GTCCTCACAACTCGCAAAAC+TGG | - | chr7.4:4046681-4046700 | MS.gene072517:intron | 50.0% | |
| TCCAGTTCCAAACTCTCCCT+TGG | + | chr7.4:4046721-4046740 | None:intergenic | 50.0% | |
| TGGTCCTCCAATACTTCCCA+AGG | - | chr7.4:4046701-4046720 | MS.gene072517:intron | 50.0% | |
| TTCACGGCTTTCCTGAACTC+TGG | - | chr7.4:4045828-4045847 | MS.gene072517:CDS | 50.0% | |
| ! | ATTGGGGTGCCCTAATTGGT+TGG | - | chr7.4:4046041-4046060 | MS.gene072517:intron | 50.0% |
| ! | CATGATTGGGGTGCCCTAAT+TGG | - | chr7.4:4046037-4046056 | MS.gene072517:intron | 50.0% |
| ! | GAAGATCTGGAGCAACAGCA+CGG | + | chr7.4:4045898-4045917 | None:intergenic | 50.0% |
| ! | GACCAGTTTTGCGAGTTGTG+AGG | + | chr7.4:4046686-4046705 | None:intergenic | 50.0% |
| !! | GTTGCTCTCATCGACTTGCT+TGG | - | chr7.4:4045989-4046008 | MS.gene072517:intron | 50.0% |
| !! | TCTCATCGACTTGCTTGGTG+TGG | - | chr7.4:4045994-4046013 | MS.gene072517:intron | 50.0% |
| !! | TCTCCCTTGGGAAGTATTGG+AGG | + | chr7.4:4046708-4046727 | None:intergenic | 50.0% |
| ATTGCTGCTCTCGGCTCTCT+CGG | - | chr7.4:4045869-4045888 | MS.gene072517:CDS | 55.0% | |
| ATTGGGAGCTCACAGCACCA+TGG | - | chr7.4:4047003-4047022 | MS.gene072517:CDS | 55.0% | |
| CAGGAAAGCCGTGAAGGAAC+AGG | + | chr7.4:4045823-4045842 | None:intergenic | 55.0% | |
| CCGTGAAGGAACAGGACAAC+AGG | + | chr7.4:4045815-4045834 | None:intergenic | 55.0% | |
| GCGTAGCTGCTAATCGAAGC+CGG | + | chr7.4:4045944-4045963 | None:intergenic | 55.0% | |
| GCTAATCGAAGCCGGAGCAT+CGG | + | chr7.4:4045936-4045955 | None:intergenic | 55.0% | |
| GCTCCAGATCTTCGTGGCTA+CGG | - | chr7.4:4045905-4045924 | MS.gene072517:CDS | 55.0% | |
| GCTGTTGCTCCAGATCTTCG+TGG | - | chr7.4:4045899-4045918 | MS.gene072517:CDS | 55.0% | |
| GTACACCTCGCCACATGTGA+AGG | - | chr7.4:4047082-4047101 | MS.gene072517:CDS | 55.0% | |
| TCACCGTAGCCACGAAGATC+TGG | + | chr7.4:4045911-4045930 | None:intergenic | 55.0% | |
| TTCTGTGAGCCAAGTGGGCA+AGG | + | chr7.4:4046766-4046785 | None:intergenic | 55.0% | |
| ! | CCCAAGGGAGAGTTTGGAAC+TGG | - | chr7.4:4046717-4046736 | MS.gene072517:intron | 55.0% |
| ! | GAGAAAACTGGCTTCACCGG+AGG | - | chr7.4:4046816-4046835 | MS.gene072517:CDS | 55.0% |
| !! | CGCCAAGAGTACCAGAGTTC+AGG | + | chr7.4:4045842-4045861 | None:intergenic | 55.0% |
| !! | GATGGCATGCGTGCTGCTTA+TGG | - | chr7.4:4046154-4046173 | MS.gene072517:CDS | 55.0% |
| AGCCGAGAGCAGCAATCTGG+TGG | + | chr7.4:4045865-4045884 | None:intergenic | 60.0% | |
| CGCCACCAGATTGCTGCTCT+CGG | - | chr7.4:4045860-4045879 | MS.gene072517:CDS | 60.0% | |
| CTACGGTGACACCGATGCTC+CGG | - | chr7.4:4045922-4045941 | MS.gene072517:CDS | 60.0% | |
| GAGAGCCGAGAGCAGCAATC+TGG | + | chr7.4:4045868-4045887 | None:intergenic | 60.0% | |
| GAGCTCACAGCACCATGGAG+TGG | - | chr7.4:4047008-4047027 | MS.gene072517:CDS | 60.0% | |
| ! | AGCCAAGTGGGCAAGGTGTC+AGG | + | chr7.4:4046759-4046778 | None:intergenic | 60.0% |
| ! | CCAAGTGGGCAAGGTGTCAG+GGG | + | chr7.4:4046757-4046776 | None:intergenic | 60.0% |
| ! | GCCAAGTGGGCAAGGTGTCA+GGG | + | chr7.4:4046758-4046777 | None:intergenic | 60.0% |
| !! | GGCAAGGTGTCAGGGGTATC+CGG | + | chr7.4:4046750-4046769 | None:intergenic | 60.0% |
| CCCCTGACACCTTGCCCACT+TGG | - | chr7.4:4046754-4046773 | MS.gene072517:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 4045737 | 4047247 | 4045737 | ID=MS.gene072517 |
| chr7.4 | mRNA | 4045737 | 4047247 | 4045737 | ID=MS.gene072517.t1;Parent=MS.gene072517 |
| chr7.4 | exon | 4046780 | 4047247 | 4046780 | ID=MS.gene072517.t1.exon1;Parent=MS.gene072517.t1 |
| chr7.4 | CDS | 4046780 | 4047247 | 4046780 | ID=cds.MS.gene072517.t1;Parent=MS.gene072517.t1 |
| chr7.4 | exon | 4046119 | 4046363 | 4046119 | ID=MS.gene072517.t1.exon2;Parent=MS.gene072517.t1 |
| chr7.4 | CDS | 4046119 | 4046363 | 4046119 | ID=cds.MS.gene072517.t1;Parent=MS.gene072517.t1 |
| chr7.4 | exon | 4045737 | 4045983 | 4045737 | ID=MS.gene072517.t1.exon3;Parent=MS.gene072517.t1 |
| chr7.4 | CDS | 4045737 | 4045983 | 4045737 | ID=cds.MS.gene072517.t1;Parent=MS.gene072517.t1 |
| Gene Sequence |
| Protein sequence |
