Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072847.t1 | XP_003603329.1 | 94.3 | 383 | 10 | 2 | 1 | 383 | 1 | 371 | 1.10E-197 | 699.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072847.t1 | O04136 | 69.1 | 433 | 78 | 11 | 1 | 383 | 1 | 427 | 2.4e-148 | 526.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072847.t1 | G7JAE2 | 94.3 | 383 | 10 | 2 | 1 | 383 | 1 | 371 | 8.1e-198 | 699.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene072847.t1 | TF | HB-KNOX |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050502 | MS.gene072847 | 0.803977 | 2.69E-49 | -1.69E-46 |
MS.gene050747 | MS.gene072847 | 0.801255 | 9.81E-49 | -1.69E-46 |
MS.gene051387 | MS.gene072847 | 0.807761 | 4.32E-50 | -1.69E-46 |
MS.gene051588 | MS.gene072847 | 0.805444 | 1.33E-49 | -1.69E-46 |
MS.gene051941 | MS.gene072847 | 0.803455 | 3.46E-49 | -1.69E-46 |
MS.gene052346 | MS.gene072847 | 0.816495 | 5.37E-52 | -1.69E-46 |
MS.gene052414 | MS.gene072847 | 0.810206 | 1.29E-50 | -1.69E-46 |
MS.gene053169 | MS.gene072847 | 0.81388 | 2.05E-51 | -1.69E-46 |
MS.gene053436 | MS.gene072847 | 0.800001 | 1.77E-48 | -1.69E-46 |
MS.gene05383 | MS.gene072847 | 0.805274 | 1.44E-49 | -1.69E-46 |
MS.gene053873 | MS.gene072847 | 0.814994 | 1.16E-51 | -1.69E-46 |
MS.gene054486 | MS.gene072847 | 0.825227 | 5.26E-54 | -1.69E-46 |
MS.gene055369 | MS.gene072847 | 0.8064 | 8.38E-50 | -1.69E-46 |
MS.gene055741 | MS.gene072847 | 0.819398 | 1.19E-52 | -1.69E-46 |
MS.gene055744 | MS.gene072847 | 0.820383 | 7.06E-53 | -1.69E-46 |
MS.gene055909 | MS.gene072847 | 0.849162 | 3.86E-60 | -1.69E-46 |
MS.gene055911 | MS.gene072847 | 0.850987 | 1.19E-60 | -1.69E-46 |
MS.gene056040 | MS.gene072847 | 0.814424 | 1.55E-51 | -1.69E-46 |
MS.gene056166 | MS.gene072847 | 0.828176 | 1.04E-54 | -1.69E-46 |
MS.gene056346 | MS.gene072847 | 0.814468 | 1.52E-51 | -1.69E-46 |
MS.gene056514 | MS.gene072847 | 0.848682 | 5.25E-60 | -1.69E-46 |
MS.gene057019 | MS.gene072847 | 0.823782 | 1.15E-53 | -1.69E-46 |
MS.gene057086 | MS.gene072847 | 0.80121 | 1.00E-48 | -1.69E-46 |
MS.gene057321 | MS.gene072847 | -0.810622 | 1.05E-50 | -1.69E-46 |
MS.gene057605 | MS.gene072847 | -0.814346 | 1.61E-51 | -1.69E-46 |
MS.gene057734 | MS.gene072847 | 0.806034 | 1.00E-49 | -1.69E-46 |
MS.gene05787 | MS.gene072847 | 0.810938 | 8.98E-51 | -1.69E-46 |
MS.gene058120 | MS.gene072847 | 0.801336 | 9.45E-49 | -1.69E-46 |
MS.gene058420 | MS.gene072847 | 0.8053 | 1.43E-49 | -1.69E-46 |
MS.gene058700 | MS.gene072847 | 0.824864 | 6.41E-54 | -1.69E-46 |
MS.gene059684 | MS.gene072847 | 0.802222 | 6.21E-49 | -1.69E-46 |
MS.gene059868 | MS.gene072847 | 0.807407 | 5.13E-50 | -1.69E-46 |
MS.gene059870 | MS.gene072847 | 0.802363 | 5.81E-49 | -1.69E-46 |
MS.gene05995 | MS.gene072847 | 0.807263 | 5.51E-50 | -1.69E-46 |
MS.gene060372 | MS.gene072847 | 0.829718 | 4.40E-55 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene76034 | MS.gene072847 | PPI |
MS.gene074258 | MS.gene072847 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072847.t1 | MTR_3g106400 | 96.084 | 383 | 3 | 2 | 1 | 383 | 1 | 371 | 0.0 | 758 |
MS.gene072847.t1 | MTR_3g106400 | 96.084 | 383 | 3 | 2 | 1 | 383 | 1 | 371 | 0.0 | 758 |
MS.gene072847.t1 | MTR_3g106400 | 96.084 | 383 | 3 | 2 | 1 | 383 | 1 | 371 | 0.0 | 757 |
MS.gene072847.t1 | MTR_1g012960 | 66.970 | 439 | 86 | 8 | 1 | 383 | 1 | 436 | 0.0 | 557 |
MS.gene072847.t1 | MTR_2g461240 | 66.006 | 353 | 79 | 6 | 31 | 382 | 42 | 354 | 1.73e-159 | 452 |
MS.gene072847.t1 | MTR_4g116545 | 79.026 | 267 | 48 | 3 | 119 | 383 | 71 | 331 | 2.54e-152 | 433 |
MS.gene072847.t1 | MTR_4g116545 | 80.709 | 254 | 41 | 3 | 119 | 370 | 71 | 318 | 3.76e-149 | 425 |
MS.gene072847.t1 | MTR_5g011070 | 67.528 | 271 | 76 | 3 | 119 | 383 | 28 | 292 | 1.45e-128 | 372 |
MS.gene072847.t1 | MTR_1g084060 | 35.249 | 261 | 122 | 8 | 119 | 367 | 20 | 245 | 6.90e-31 | 119 |
MS.gene072847.t1 | MTR_1g084060 | 35.249 | 261 | 122 | 8 | 119 | 367 | 20 | 245 | 1.44e-30 | 119 |
MS.gene072847.t1 | MTR_2g024390 | 30.400 | 250 | 143 | 4 | 119 | 367 | 118 | 337 | 3.73e-28 | 114 |
MS.gene072847.t1 | MTR_1g017080 | 32.669 | 251 | 139 | 7 | 119 | 367 | 120 | 342 | 1.34e-25 | 107 |
MS.gene072847.t1 | MTR_5g033720 | 32.669 | 251 | 138 | 6 | 119 | 367 | 73 | 294 | 2.50e-25 | 105 |
MS.gene072847.t1 | MTR_5g085860 | 30.588 | 255 | 133 | 6 | 119 | 367 | 47 | 263 | 2.27e-24 | 102 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072847.t1 | AT5G25220 | 64.989 | 437 | 81 | 12 | 1 | 383 | 1 | 419 | 2.18e-180 | 508 |
MS.gene072847.t1 | AT5G25220 | 64.908 | 436 | 81 | 12 | 1 | 382 | 1 | 418 | 1.04e-179 | 506 |
MS.gene072847.t1 | AT5G11060 | 67.233 | 412 | 75 | 12 | 1 | 382 | 1 | 382 | 1.07e-173 | 489 |
MS.gene072847.t1 | AT4G32040 | 62.895 | 380 | 126 | 8 | 6 | 383 | 13 | 379 | 3.35e-156 | 445 |
MS.gene072847.t1 | AT4G32040 | 62.895 | 380 | 126 | 8 | 6 | 383 | 13 | 379 | 3.41e-156 | 445 |
MS.gene072847.t1 | AT1G62990 | 62.759 | 290 | 99 | 4 | 96 | 382 | 7 | 290 | 4.04e-127 | 367 |
MS.gene072847.t1 | AT1G70510 | 33.077 | 260 | 137 | 8 | 112 | 367 | 63 | 289 | 9.38e-30 | 117 |
MS.gene072847.t1 | AT1G23380 | 34.630 | 257 | 123 | 9 | 119 | 367 | 86 | 305 | 1.25e-28 | 114 |
MS.gene072847.t1 | AT1G70510 | 31.923 | 260 | 144 | 7 | 112 | 367 | 63 | 293 | 3.06e-28 | 113 |
MS.gene072847.t1 | AT1G23380 | 34.363 | 259 | 123 | 10 | 119 | 367 | 86 | 307 | 8.78e-27 | 109 |
MS.gene072847.t1 | AT4G08150 | 33.205 | 259 | 130 | 8 | 119 | 367 | 135 | 360 | 8.32e-26 | 107 |
MS.gene072847.t1 | AT1G62360 | 34.400 | 250 | 135 | 6 | 119 | 367 | 122 | 343 | 2.08e-25 | 106 |
Find 119 sgRNAs with CRISPR-Local
Find 327 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GATAATAGTATGGGAGGATT+TGG | 0.320582 | 3.2:-87615997 | MS.gene072847:CDS |
TGCCAGCTGAGCGTCGATCC+TGG | 0.345057 | 3.2:+87618995 | None:intergenic |
TGTACCTGTTAGACTTTGTA+AGG | 0.355039 | 3.2:+87617795 | None:intergenic |
GTACTCTGCGTTAGGACAAC+AGG | 0.363398 | 3.2:-87618949 | MS.gene072847:CDS |
GGATGGTTCAGATAATAGTA+TGG | 0.368115 | 3.2:-87616007 | MS.gene072847:CDS |
CTTTCCAAACTGCACCTAAC+TGG | 0.380352 | 3.2:-87619358 | MS.gene072847:CDS |
AATTGAAACAGATCAATAAC+TGG | 0.381851 | 3.2:-87615011 | MS.gene072847:CDS |
GTTGTTGTTGTTCTGTGAAA+TGG | 0.389827 | 3.2:+87619408 | None:intergenic |
TGCCTTTCAGGAAGAGGATA+AGG | 0.392331 | 3.2:-87615061 | MS.gene072847:intron |
CAGTCCTTACAAAGTCTAAC+AGG | 0.396414 | 3.2:-87617799 | MS.gene072847:intron |
GAGCGTCGATCCTGGGCAAC+TGG | 0.397329 | 3.2:+87619003 | None:intergenic |
TAAACAACTCGACCACTTCA+TGG | 0.399427 | 3.2:-87618904 | MS.gene072847:intron |
GAGCCATTGACCGGAGGATT+GGG | 0.403988 | 3.2:+87619235 | None:intergenic |
GCAAGGTTGGTGCAAGAAAC+CGG | 0.410624 | 3.2:-87615039 | MS.gene072847:CDS |
TGGTGTCGAGGTTGCGAAGA+AGG | 0.418558 | 3.2:+87619324 | None:intergenic |
AGACGAGCTGGAAAACTTCC+TGG | 0.420513 | 3.2:-87615618 | MS.gene072847:CDS |
AGTGATGTTAATCTGTTTGA+TGG | 0.421723 | 3.2:-87616036 | MS.gene072847:CDS |
AGGGCGTTGTTGAGCCAGTT+AGG | 0.423606 | 3.2:+87619344 | None:intergenic |
GAAGTCATCGACGACGTTAC+CGG | 0.424039 | 3.2:-87619182 | MS.gene072847:CDS |
TGAGCCAGTTAGGTGCAGTT+TGG | 0.424789 | 3.2:+87619354 | None:intergenic |
GGAAGCAGTAATGGCTTGTT+GGG | 0.426655 | 3.2:-87617830 | MS.gene072847:CDS |
GTTCCCAATCCTCCGGTCAA+TGG | 0.427348 | 3.2:-87619238 | MS.gene072847:CDS |
AATGGTGGAGTGGGTTGTCT+TGG | 0.431285 | 3.2:+87619426 | None:intergenic |
TGGAAGCAGTAATGGCTTGT+TGG | 0.435199 | 3.2:-87617831 | MS.gene072847:CDS |
GAAACGCAAAGGTGAAATAA+TGG | 0.435340 | 3.2:-87619093 | MS.gene072847:CDS |
ATCCTGGGCAACTGGTCAAC+CGG | 0.438877 | 3.2:+87619011 | None:intergenic |
TCAATCAAAGGAAGAGGAAC+TGG | 0.439251 | 3.2:-87614984 | MS.gene072847:CDS |
GAAGTTGGTACTGTTGTTGT+TGG | 0.439599 | 3.2:+87619280 | None:intergenic |
GCCCAGGATCGACGCTCAGC+TGG | 0.442737 | 3.2:-87618997 | MS.gene072847:CDS |
TAATCTGTTTGATGGAGGTT+TGG | 0.446200 | 3.2:-87616028 | MS.gene072847:CDS |
AGAGCCATTGACCGGAGGAT+TGG | 0.446472 | 3.2:+87619234 | None:intergenic |
GCCAGCTGAGCGTCGATCCT+GGG | 0.452139 | 3.2:+87618996 | None:intergenic |
GGTACTGTTGTTGTTGGTTG+TGG | 0.453246 | 3.2:+87619286 | None:intergenic |
ATTAAAGCATGAGTTGAAAC+AGG | 0.455099 | 3.2:-87615920 | MS.gene072847:intron |
ATAGAAGCTGTTCATACAAC+GGG | 0.456842 | 3.2:+87619066 | None:intergenic |
TTGTCCTAACGCAGAGTACT+TGG | 0.459203 | 3.2:+87618953 | None:intergenic |
AACCGGCGGTGTCGAGGTTG+AGG | 0.460908 | 3.2:+87619258 | None:intergenic |
CAGCGGAGGGAGTGATGAAC+TGG | 0.464161 | 3.2:-87619124 | MS.gene072847:CDS |
CGCCGGTTGACCAGTTGCCC+AGG | 0.465203 | 3.2:-87619013 | MS.gene072847:CDS |
CAACCTCAGTACTTAAAGAT+TGG | 0.466078 | 3.2:-87615590 | MS.gene072847:CDS |
TTCAACGCATTAGAAGTTGA+AGG | 0.469895 | 3.2:+87614952 | None:intergenic |
GTTGTTGTTGGTTGTGGCGG+TGG | 0.469972 | 3.2:+87619292 | None:intergenic |
CCATGCAATGGAAGCAGTAA+TGG | 0.471444 | 3.2:-87617839 | MS.gene072847:CDS |
GTTGCTCCTGTACCTTCCCC+TGG | 0.471752 | 3.2:+87616090 | None:intergenic |
CTGTTTGATGGAGGTTTGGA+TGG | 0.472583 | 3.2:-87616024 | MS.gene072847:CDS |
CATGGACTCGGACATGTTGT+TGG | 0.486135 | 3.2:+87617857 | None:intergenic |
AGAGTTCTTACAGTAGGATA+AGG | 0.489180 | 3.2:+87615546 | None:intergenic |
CGTTACCGGCGCTGGTATGA+AGG | 0.491895 | 3.2:-87619168 | MS.gene072847:CDS |
GTTGCCAAGTACTCTGCGTT+AGG | 0.491986 | 3.2:-87618957 | MS.gene072847:CDS |
GTTTCACCAGGGGAAGGTAC+AGG | 0.498577 | 3.2:-87616096 | MS.gene072847:CDS |
AGTACTGAGGTTGTGTCACC+AGG | 0.501554 | 3.2:+87615600 | None:intergenic |
CCATTACTGCTTCCATTGCA+TGG | 0.504180 | 3.2:+87617839 | None:intergenic |
AGGACGGGAGAGCCATTGAC+CGG | 0.509843 | 3.2:+87619226 | None:intergenic |
CTGTGGTTTCGATGGAGGAC+AGG | 0.510607 | 3.2:+87619206 | None:intergenic |
GTTCTGTGAAATGGTGGAGT+GGG | 0.511127 | 3.2:+87619417 | None:intergenic |
AAGCGGTGAGGCAACAGCGG+AGG | 0.511964 | 3.2:-87619138 | MS.gene072847:CDS |
CTGCTTCCATTGCATGGACT+CGG | 0.514678 | 3.2:+87617845 | None:intergenic |
TTGACCGGAGGATTGGGAAC+CGG | 0.515320 | 3.2:+87619241 | None:intergenic |
TGTTGCCTCACCGCTTTCCT+CGG | 0.515416 | 3.2:+87619145 | None:intergenic |
TGACTTCGCTGTGGTTTCGA+TGG | 0.516848 | 3.2:+87619198 | None:intergenic |
TCATTCTCTGTTAGAACAAG+AGG | 0.524064 | 3.2:+87615973 | None:intergenic |
GGTGTCGAGGTTGCGAAGAA+GGG | 0.525959 | 3.2:+87619325 | None:intergenic |
GAAAATTGTGGACATAAGAG+AGG | 0.527462 | 3.2:-87615655 | MS.gene072847:CDS |
GGTGTCGAGGTTGAGGAAGT+TGG | 0.532035 | 3.2:+87619265 | None:intergenic |
ATTGGGAACCGGCGGTGTCG+AGG | 0.533014 | 3.2:+87619252 | None:intergenic |
GATGGTTCAGATAATAGTAT+GGG | 0.538925 | 3.2:-87616006 | MS.gene072847:CDS |
CGTTGAAGAGCAAGCGCAAG+AGG | 0.539470 | 3.2:-87614936 | MS.gene072847:intron |
GGAAGAGGATAAGGCAAGGT+TGG | 0.540633 | 3.2:-87615052 | MS.gene072847:CDS |
GTTGTTGTTCTGTGAAATGG+TGG | 0.541053 | 3.2:+87619411 | None:intergenic |
GAGTGGTGAGGATCGGAGGT+TGG | 0.542790 | 3.2:+87619380 | None:intergenic |
CTTCGCTGTGGTTTCGATGG+AGG | 0.543312 | 3.2:+87619201 | None:intergenic |
CTCGGCCTTCATACCAGCGC+CGG | 0.547542 | 3.2:+87619163 | None:intergenic |
CCTCAGTACTTAAAGATTGG+TGG | 0.548243 | 3.2:-87615587 | MS.gene072847:CDS |
GTTTCGATGGAGGACAGGAC+GGG | 0.549706 | 3.2:+87619211 | None:intergenic |
GAAAGAGTGGTGAGGATCGG+AGG | 0.551627 | 3.2:+87619376 | None:intergenic |
ATCGACGACGTTACCGGCGC+TGG | 0.558499 | 3.2:-87619176 | MS.gene072847:CDS |
AGCGGTGAGGCAACAGCGGA+GGG | 0.559972 | 3.2:-87619137 | MS.gene072847:CDS |
AGAGAATGAGAGGTCCCTCA+TGG | 0.567340 | 3.2:-87615959 | MS.gene072847:CDS |
ATAACTGGTTTATCAATCAA+AGG | 0.567448 | 3.2:-87614996 | MS.gene072847:CDS |
TGTTCTGTGAAATGGTGGAG+TGG | 0.567991 | 3.2:+87619416 | None:intergenic |
CAAGGTTGGTGCAAGAAACC+GGG | 0.570646 | 3.2:-87615038 | MS.gene072847:CDS |
ACCGCCGGTTCCCAATCCTC+CGG | 0.570735 | 3.2:-87619245 | MS.gene072847:CDS |
TTCCTCAACCTCGACACCGC+CGG | 0.572536 | 3.2:-87619260 | MS.gene072847:CDS |
CGGCGCTGGTATGAAGGCCG+AGG | 0.574579 | 3.2:-87619162 | MS.gene072847:CDS |
GGTTTATCAATCAAAGGAAG+AGG | 0.579093 | 3.2:-87614990 | MS.gene072847:CDS |
TTGGAAAGAGTGGTGAGGAT+CGG | 0.583594 | 3.2:+87619373 | None:intergenic |
CCACCAATCTTTAAGTACTG+AGG | 0.588799 | 3.2:+87615587 | None:intergenic |
GGTTTCGATGGAGGACAGGA+CGG | 0.592132 | 3.2:+87619210 | None:intergenic |
AAAGGTAAAATACCATGAAG+TGG | 0.598924 | 3.2:+87618892 | None:intergenic |
TAGGTGCAGTTTGGAAAGAG+TGG | 0.600373 | 3.2:+87619363 | None:intergenic |
TGGCGTTGACGTTGGTGTCG+AGG | 0.601937 | 3.2:+87619312 | None:intergenic |
GGGTTATAAAGAGAAAATTG+TGG | 0.610746 | 3.2:-87615667 | MS.gene072847:CDS |
TTGTTCTAACAGAGAATGAG+AGG | 0.611125 | 3.2:-87615969 | MS.gene072847:CDS |
TGTGGCGGTGGCGTTGACGT+TGG | 0.611369 | 3.2:+87619304 | None:intergenic |
GGTTCAGATAATAGTATGGG+AGG | 0.618510 | 3.2:-87616003 | MS.gene072847:CDS |
GATGTTAATCTGTTTGATGG+AGG | 0.621633 | 3.2:-87616033 | MS.gene072847:CDS |
TGTGTAACAGGAGTTTCACC+AGG | 0.621894 | 3.2:-87616108 | MS.gene072847:intron |
TGGCAGAAAGCGAAACGCAA+AGG | 0.622833 | 3.2:-87619104 | MS.gene072847:CDS |
GATCTGTTTCAATTGCAACC+CGG | 0.623157 | 3.2:+87615020 | None:intergenic |
ACCGGAGGATTGGGAACCGG+CGG | 0.625286 | 3.2:+87619244 | None:intergenic |
GGAAAGCGGTGAGGCAACAG+CGG | 0.626255 | 3.2:-87619141 | MS.gene072847:CDS |
GGGCAACTGGTCAACCGGCG+TGG | 0.628223 | 3.2:+87619016 | None:intergenic |
ATGTCTTACACGTTCCATGA+GGG | 0.635061 | 3.2:+87615945 | None:intergenic |
ACAGGAGTTTCACCAGGGGA+AGG | 0.636992 | 3.2:-87616102 | MS.gene072847:intron |
ACATGTCCGAGTCCATGCAA+TGG | 0.642083 | 3.2:-87617851 | MS.gene072847:CDS |
ACTGTTGTTGTTGGTTGTGG+CGG | 0.642777 | 3.2:+87619289 | None:intergenic |
CATGTCTTACACGTTCCATG+AGG | 0.645094 | 3.2:+87615944 | None:intergenic |
GATAGAAGCTGTTCATACAA+CGG | 0.647941 | 3.2:+87619065 | None:intergenic |
TACTCTGCGTTAGGACAACA+GGG | 0.650241 | 3.2:-87618948 | MS.gene072847:CDS |
GGTATGAAGGCCGAGGAAAG+CGG | 0.652275 | 3.2:-87619155 | MS.gene072847:CDS |
ACGGGAGAGCCATTGACCGG+AGG | 0.652694 | 3.2:+87619229 | None:intergenic |
GTGTTTGAGAATCGCCACGC+CGG | 0.654940 | 3.2:-87619030 | MS.gene072847:CDS |
TTCAGGAAGAGGATAAGGCA+AGG | 0.655439 | 3.2:-87615056 | MS.gene072847:intron |
GGTGGCAATCACATTCAAAG+TGG | 0.680210 | 3.2:-87615569 | MS.gene072847:CDS |
CGTCGTCGATGACTTCGCTG+TGG | 0.682559 | 3.2:+87619189 | None:intergenic |
GCAGTTTGGAAAGAGTGGTG+AGG | 0.695329 | 3.2:+87619368 | None:intergenic |
GTGTAACAGGAGTTTCACCA+GGG | 0.706920 | 3.2:-87616107 | MS.gene072847:intron |
GAAGGCCGAGGAAAGCGGTG+AGG | 0.708487 | 3.2:-87619150 | MS.gene072847:CDS |
TGTAACAGGAGTTTCACCAG+GGG | 0.775474 | 3.2:-87616106 | MS.gene072847:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAAAAATAATAATGATTAGT+GGG | + | chr3.2:87619181-87619200 | None:intergenic | 10.0% |
!!! | AATTACAATATTTTTTTGTA+TGG | - | chr3.2:87616128-87616147 | MS.gene072847:intron | 10.0% |
!! | AATGATAATTAAGATCTTAA+TGG | - | chr3.2:87617261-87617280 | MS.gene072847:intron | 15.0% |
!! | AATTTATTAGTAAGATAGAA+TGG | - | chr3.2:87617906-87617925 | MS.gene072847:intron | 15.0% |
!! | ATTTAGTGTTATATTGTATT+GGG | - | chr3.2:87615783-87615802 | MS.gene072847:intron | 15.0% |
!! | CTAAAAATAATAATGATTAG+TGG | + | chr3.2:87619182-87619201 | None:intergenic | 15.0% |
!! | CTAATAAATTATTCATTATG+TGG | + | chr3.2:87617896-87617915 | None:intergenic | 15.0% |
!! | TATTTAGTGTTATATTGTAT+TGG | - | chr3.2:87615782-87615801 | MS.gene072847:intron | 15.0% |
!! | TTTGTAAATATTATTGAGAA+AGG | + | chr3.2:87615413-87615432 | None:intergenic | 15.0% |
!!! | AATTTTCTGCAATAATATTT+TGG | - | chr3.2:87616184-87616203 | MS.gene072847:intron | 15.0% |
!!! | AGAAAAGTGTATAAATAAAT+AGG | - | chr3.2:87615719-87615738 | MS.gene072847:intron | 15.0% |
!!! | ATAATTTATTTTCTGTTGTA+TGG | - | chr3.2:87616328-87616347 | MS.gene072847:intron | 15.0% |
!!! | ATTTATACTTTTCTCAATAT+AGG | - | chr3.2:87616719-87616738 | MS.gene072847:intron | 15.0% |
!!! | CATATTTAAATACTTTTCAT+TGG | - | chr3.2:87617066-87617085 | MS.gene072847:intron | 15.0% |
!!! | TATTTTTTATTTTTTTGTCG+TGG | - | chr3.2:87616262-87616281 | MS.gene072847:intron | 15.0% |
!!! | TTTAATAAAAGTACCAATTA+AGG | + | chr3.2:87617129-87617148 | None:intergenic | 15.0% |
!!! | TTTATTACTTTTTTAAACGT+GGG | + | chr3.2:87616928-87616947 | None:intergenic | 15.0% |
!!! | TTTTATTACTTTTTTAAACG+TGG | + | chr3.2:87616929-87616948 | None:intergenic | 15.0% |
!! | AAAATAATTAAGGTAGCTAA+TGG | - | chr3.2:87615957-87615976 | MS.gene072847:CDS | 20.0% |
!! | AAAGTGGAATATATTGTATT+GGG | - | chr3.2:87615742-87615761 | MS.gene072847:intron | 20.0% |
!! | AAATAACATGCTAAAAAGTA+AGG | + | chr3.2:87618019-87618038 | None:intergenic | 20.0% |
!! | AATTAGTACTCATATCTAAT+GGG | + | chr3.2:87618135-87618154 | None:intergenic | 20.0% |
!! | AGTTGTATTGAAAATTGAAA+TGG | - | chr3.2:87615815-87615834 | MS.gene072847:intron | 20.0% |
!! | ATTATTCATTATGTGGTTTA+AGG | + | chr3.2:87617889-87617908 | None:intergenic | 20.0% |
!! | GATTACATTAAATGTTGAAT+AGG | - | chr3.2:87618400-87618419 | MS.gene072847:intron | 20.0% |
!! | GTTTAATATGTAAAGATAGT+GGG | - | chr3.2:87617042-87617061 | MS.gene072847:intron | 20.0% |
!! | TAAATTATTCATGACGTATT+TGG | + | chr3.2:87617420-87617439 | None:intergenic | 20.0% |
!! | TAATTAGTACTCATATCTAA+TGG | + | chr3.2:87618136-87618155 | None:intergenic | 20.0% |
!! | TATGTTAAAATAAGCTCAAA+AGG | + | chr3.2:87616024-87616043 | None:intergenic | 20.0% |
!! | TGTATAAATAAATAGGAAAG+TGG | - | chr3.2:87615726-87615745 | MS.gene072847:intron | 20.0% |
!! | TGTTTAATATGTAAAGATAG+TGG | - | chr3.2:87617041-87617060 | MS.gene072847:intron | 20.0% |
!! | TTCTCAATATAGGAATTATA+CGG | - | chr3.2:87616729-87616748 | MS.gene072847:intron | 20.0% |
!!! | ACTTATTTCTAATTCAAGAT+CGG | + | chr3.2:87619432-87619451 | None:intergenic | 20.0% |
!!! | CATATTGATTAATATCCAAT+TGG | + | chr3.2:87617689-87617708 | None:intergenic | 20.0% |
!!! | GACACTTTTTTTTAGAAAAT+GGG | - | chr3.2:87615852-87615871 | MS.gene072847:intron | 20.0% |
!!! | GCAAAACTTAAATTTTAACT+CGG | - | chr3.2:87615562-87615581 | MS.gene072847:CDS | 20.0% |
!!! | GCAAATTTAAGATTATGAAA+AGG | + | chr3.2:87619397-87619416 | None:intergenic | 20.0% |
!!! | TACAATATTTTTTTGTATGG+TGG | - | chr3.2:87616131-87616150 | MS.gene072847:intron | 20.0% |
!!! | TATTACTCATTTTTACAAGT+GGG | + | chr3.2:87617008-87617027 | None:intergenic | 20.0% |
! | AAAACATAATTACACTCCAT+TGG | + | chr3.2:87616243-87616262 | None:intergenic | 25.0% |
! | AAAGTCCAAACAATTCATAT+GGG | + | chr3.2:87617813-87617832 | None:intergenic | 25.0% |
! | AACATCATAGTTATACTGTA+TGG | - | chr3.2:87617959-87617978 | MS.gene072847:intron | 25.0% |
! | AACATTTAATGTAATCCATG+AGG | + | chr3.2:87618396-87618415 | None:intergenic | 25.0% |
! | AAGCTATCTTAGATATCTTA+CGG | - | chr3.2:87619026-87619045 | MS.gene072847:CDS | 25.0% |
! | AATTCTGTCAAAAAAAAGCA+AGG | + | chr3.2:87617994-87618013 | None:intergenic | 25.0% |
! | AATTGAAACAGATCAATAAC+TGG | - | chr3.2:87619273-87619292 | MS.gene072847:CDS | 25.0% |
! | ACAATTCTGTCAAAAAAACA+AGG | + | chr3.2:87617567-87617586 | None:intergenic | 25.0% |
! | AGGAATAAGCAACAAAAATT+TGG | + | chr3.2:87616603-87616622 | None:intergenic | 25.0% |
! | ATATGAATTGTTTGGACTTT+GGG | - | chr3.2:87617813-87617832 | MS.gene072847:CDS | 25.0% |
! | CATTAAATGTTGAATAGGAA+AGG | - | chr3.2:87618405-87618424 | MS.gene072847:intron | 25.0% |
! | CATTCGTGTAATTTATCTTT+AGG | + | chr3.2:87616623-87616642 | None:intergenic | 25.0% |
! | CCTGTACATATGAATTATTT+GGG | - | chr3.2:87617335-87617354 | MS.gene072847:intron | 25.0% |
! | GAAAGTGGAATATATTGTAT+TGG | - | chr3.2:87615741-87615760 | MS.gene072847:intron | 25.0% |
! | GAATTAGAAATAAGTAATGC+AGG | - | chr3.2:87619437-87619456 | MS.gene072847:CDS | 25.0% |
! | GTAATAAAATGTGTACTACT+TGG | - | chr3.2:87616940-87616959 | MS.gene072847:intron | 25.0% |
! | GTATCTATATTCAAAGTACA+TGG | + | chr3.2:87618052-87618071 | None:intergenic | 25.0% |
! | TAAATATTTGAGAACCTGAT+TGG | + | chr3.2:87619081-87619100 | None:intergenic | 25.0% |
! | TATTACTTCTTTATGCAAGT+GGG | + | chr3.2:87616967-87616986 | None:intergenic | 25.0% |
! | TCCTGTACATATGAATTATT+TGG | - | chr3.2:87617334-87617353 | MS.gene072847:intron | 25.0% |
! | TCTAAGAAAATTTGAAAAGG+AGG | + | chr3.2:87616767-87616786 | None:intergenic | 25.0% |
! | TCTCAATATAGGAATTATAC+GGG | - | chr3.2:87616730-87616749 | MS.gene072847:intron | 25.0% |
! | TTATTACTTCTTTATGCAAG+TGG | + | chr3.2:87616968-87616987 | None:intergenic | 25.0% |
! | TTTCAGATTCAAAACATACT+TGG | - | chr3.2:87618796-87618815 | MS.gene072847:intron | 25.0% |
!! | ACATATGAATTATTTGGGTT+AGG | - | chr3.2:87617340-87617359 | MS.gene072847:intron | 25.0% |
!! | ACTGAAAATAAGTCTAAAGT+AGG | - | chr3.2:87615914-87615933 | MS.gene072847:intron | 25.0% |
!! | ATAACTGGTTTATCAATCAA+AGG | - | chr3.2:87619288-87619307 | MS.gene072847:CDS | 25.0% |
!! | CATATGAATTATTTGGGTTA+GGG | - | chr3.2:87617341-87617360 | MS.gene072847:intron | 25.0% |
!! | TATTTTCTGTTGTATGGTTA+CGG | - | chr3.2:87616334-87616353 | MS.gene072847:intron | 25.0% |
!! | TTGAAATGGATCAGTTATTT+TGG | - | chr3.2:87615829-87615848 | MS.gene072847:intron | 25.0% |
!!! | AACATGTGAACTATTTTGAA+TGG | + | chr3.2:87619128-87619147 | None:intergenic | 25.0% |
!!! | CAATTTCACTTTTGCAAAAA+AGG | + | chr3.2:87615607-87615626 | None:intergenic | 25.0% |
!!! | CTATTACTCATTTTTACAAG+TGG | + | chr3.2:87617009-87617028 | None:intergenic | 25.0% |
!!! | GGACACTTTTTTTTAGAAAA+TGG | - | chr3.2:87615851-87615870 | MS.gene072847:intron | 25.0% |
!!! | GTATGTTTTGAATCTGAAAA+AGG | + | chr3.2:87618795-87618814 | None:intergenic | 25.0% |
!!! | TGAAATGGATCAGTTATTTT+GGG | - | chr3.2:87615830-87615849 | MS.gene072847:intron | 25.0% |
!!! | TGCTCTAAGAAAATTTGAAA+AGG | + | chr3.2:87616770-87616789 | None:intergenic | 25.0% |
!!! | TTTCTGCAATAATATTTTGG+CGG | - | chr3.2:87616187-87616206 | MS.gene072847:intron | 25.0% |
AAAAAAAAGCAAGGACAACT+GGG | + | chr3.2:87617985-87618004 | None:intergenic | 30.0% | |
AAAGGTAAAATACCATGAAG+TGG | + | chr3.2:87615395-87615414 | None:intergenic | 30.0% | |
AAATTTGTGTCTACAGTAAC+TGG | + | chr3.2:87616297-87616316 | None:intergenic | 30.0% | |
AACATGTTATAGATCCAATC+AGG | - | chr3.2:87619064-87619083 | MS.gene072847:CDS | 30.0% | |
AAGTGAAATTGAAACATGCA+CGG | - | chr3.2:87615616-87615635 | MS.gene072847:CDS | 30.0% | |
ACAAGTTAGCTAATCTTTCT+TGG | + | chr3.2:87617629-87617648 | None:intergenic | 30.0% | |
AGTAATAATCAAGCCCTTAA+TGG | - | chr3.2:87617735-87617754 | MS.gene072847:intron | 30.0% | |
AGTGATGTTAATCTGTTTGA+TGG | - | chr3.2:87618248-87618267 | MS.gene072847:intron | 30.0% | |
ATTCAAAGTACATGGTAGTT+TGG | + | chr3.2:87618044-87618063 | None:intergenic | 30.0% | |
ATTCATGACGTATTTGGTAT+AGG | + | chr3.2:87617414-87617433 | None:intergenic | 30.0% | |
CAAAGTAGATCAATTATACC+GGG | + | chr3.2:87615682-87615701 | None:intergenic | 30.0% | |
CAAAGTCCAAACAATTCATA+TGG | + | chr3.2:87617814-87617833 | None:intergenic | 30.0% | |
CAATATAGAGTTCTTACAGT+AGG | + | chr3.2:87618747-87618766 | None:intergenic | 30.0% | |
CATATGAATTGTTTGGACTT+TGG | - | chr3.2:87617812-87617831 | MS.gene072847:CDS | 30.0% | |
CCAAAGTAGATCAATTATAC+CGG | + | chr3.2:87615683-87615702 | None:intergenic | 30.0% | |
CCCAAATAATTCATATGTAC+AGG | + | chr3.2:87617338-87617357 | None:intergenic | 30.0% | |
CTCAATATAGGAATTATACG+GGG | - | chr3.2:87616731-87616750 | MS.gene072847:intron | 30.0% | |
CTTTGACTATCAACCATTAA+GGG | + | chr3.2:87617277-87617296 | None:intergenic | 30.0% | |
GATGGTTCAGATAATAGTAT+GGG | - | chr3.2:87618278-87618297 | MS.gene072847:intron | 30.0% | |
GGGTTATAAAGAGAAAATTG+TGG | - | chr3.2:87618617-87618636 | MS.gene072847:intron | 30.0% | |
TAATTCATATGTACAGGACA+AGG | + | chr3.2:87617332-87617351 | None:intergenic | 30.0% | |
TATACATAAATCCTTGCCAA+TGG | - | chr3.2:87616224-87616243 | MS.gene072847:intron | 30.0% | |
TATTTAAGGAGTCCTTGTTA+GGG | - | chr3.2:87617182-87617201 | MS.gene072847:intron | 30.0% | |
TCAAAAAAACAAGGACAACT+GGG | + | chr3.2:87617558-87617577 | None:intergenic | 30.0% | |
TGTGTTGAAACTTGAAATGA+TGG | + | chr3.2:87618472-87618491 | None:intergenic | 30.0% | |
! | ATTAAAGCATGAGTTGAAAC+AGG | - | chr3.2:87618364-87618383 | MS.gene072847:intron | 30.0% |
! | GTTACTGTAGACACAAATTT+TGG | - | chr3.2:87616297-87616316 | MS.gene072847:intron | 30.0% |
! | TGTCAATTAATGGATGGAAA+TGG | - | chr3.2:87615478-87615497 | MS.gene072847:intron | 30.0% |
! | TTAATGGATGGAAATGGATT+TGG | - | chr3.2:87615484-87615503 | MS.gene072847:intron | 30.0% |
! | TTTCTTGGTGGATAATAGTT+TGG | + | chr3.2:87617614-87617633 | None:intergenic | 30.0% |
!! | TTAATGGTTGATAGTCAAAG+AGG | - | chr3.2:87617277-87617296 | MS.gene072847:intron | 30.0% |
!!! | CATACATCACTTTTTCCAAT+TGG | - | chr3.2:87617671-87617690 | MS.gene072847:intron | 30.0% |
!!! | CCTTTTGAGCTTATTTTAAC+CGG | - | chr3.2:87616021-87616040 | MS.gene072847:CDS | 30.0% |
AAATAAGTGATGTGTCACGT+GGG | - | chr3.2:87617156-87617175 | MS.gene072847:intron | 35.0% | |
AAGCTTTGCGTGTCAATTAA+TGG | - | chr3.2:87615468-87615487 | MS.gene072847:intron | 35.0% | |
AGAAAATGGGTCAGTTATTC+CGG | - | chr3.2:87615865-87615884 | MS.gene072847:intron | 35.0% | |
AGAGTTCTTACAGTAGGATA+AGG | + | chr3.2:87618741-87618760 | None:intergenic | 35.0% | |
AGTTAGCTAATCTTTCTTGG+TGG | + | chr3.2:87617626-87617645 | None:intergenic | 35.0% | |
ATAATAACATGCTACGAGCA+AGG | + | chr3.2:87617590-87617609 | None:intergenic | 35.0% | |
ATAATTACACTCCATTGGCA+AGG | + | chr3.2:87616238-87616257 | None:intergenic | 35.0% | |
ATAGAAGCTGTTCATACAAC+GGG | + | chr3.2:87615221-87615240 | None:intergenic | 35.0% | |
ATTGAGTTCCTGTTAAGGAA+CGG | - | chr3.2:87616859-87616878 | MS.gene072847:intron | 35.0% | |
CAAAAAAAAGCAAGGACAAC+TGG | + | chr3.2:87617986-87618005 | None:intergenic | 35.0% | |
CAAACAATTCATATGGGACA+AGG | + | chr3.2:87617807-87617826 | None:intergenic | 35.0% | |
CAACCTCAGTACTTAAAGAT+TGG | - | chr3.2:87618694-87618713 | MS.gene072847:intron | 35.0% | |
CATGTTAAGATAGGCTCAAA+AGG | + | chr3.2:87615994-87616013 | None:intergenic | 35.0% | |
CCATTCTCTAATACACGTTT+CGG | + | chr3.2:87618579-87618598 | None:intergenic | 35.0% | |
CCGGTATAATTGATCTACTT+TGG | - | chr3.2:87615680-87615699 | MS.gene072847:intron | 35.0% | |
CCGGTTAAAATAAGCTCAAA+AGG | + | chr3.2:87616054-87616073 | None:intergenic | 35.0% | |
CCTTTGACTATCAACCATTA+AGG | + | chr3.2:87617752-87617771 | None:intergenic | 35.0% | |
CGAAACGTGTATTAGAGAAT+GGG | - | chr3.2:87618577-87618596 | MS.gene072847:intron | 35.0% | |
CTATTTAAGGAGTCCTTGTT+AGG | - | chr3.2:87617181-87617200 | MS.gene072847:intron | 35.0% | |
CTTGTCCCATATGAATTGTT+TGG | - | chr3.2:87617805-87617824 | MS.gene072847:CDS | 35.0% | |
GAAAATTGTGGACATAAGAG+AGG | - | chr3.2:87618629-87618648 | MS.gene072847:intron | 35.0% | |
GAAACGCAAAGGTGAAATAA+TGG | - | chr3.2:87615191-87615210 | MS.gene072847:intron | 35.0% | |
GAAAGATTGAGTTCCTGTTA+AGG | - | chr3.2:87616854-87616873 | MS.gene072847:intron | 35.0% | |
GATAATAGTATGGGAGGATT+TGG | - | chr3.2:87618287-87618306 | MS.gene072847:intron | 35.0% | |
GATAGAAGCTGTTCATACAA+CGG | + | chr3.2:87615222-87615241 | None:intergenic | 35.0% | |
GATGTTAATCTGTTTGATGG+AGG | - | chr3.2:87618251-87618270 | MS.gene072847:intron | 35.0% | |
GCTGTTATAGCTATACTGTA+TGG | - | chr3.2:87617532-87617551 | MS.gene072847:intron | 35.0% | |
GGATGGTTCAGATAATAGTA+TGG | - | chr3.2:87618277-87618296 | MS.gene072847:intron | 35.0% | |
GGTCAAGTTCATGTTAAGAT+AGG | + | chr3.2:87616003-87616022 | None:intergenic | 35.0% | |
GGTTTATCAATCAAAGGAAG+AGG | - | chr3.2:87619294-87619313 | MS.gene072847:CDS | 35.0% | |
GTCAAAAAAACAAGGACAAC+TGG | + | chr3.2:87617559-87617578 | None:intergenic | 35.0% | |
TAAATAAGTGATGTGTCACG+TGG | - | chr3.2:87617155-87617174 | MS.gene072847:intron | 35.0% | |
TAATCTGTTTGATGGAGGTT+TGG | - | chr3.2:87618256-87618275 | MS.gene072847:intron | 35.0% | |
TCATTCTCTGTTAGAACAAG+AGG | + | chr3.2:87618314-87618333 | None:intergenic | 35.0% | |
TCTTATGAGTGTATTGCCAT+TGG | - | chr3.2:87617092-87617111 | MS.gene072847:intron | 35.0% | |
TGTACCTGTTAGACTTTGTA+AGG | + | chr3.2:87616492-87616511 | None:intergenic | 35.0% | |
TTAACCGGCATGTTTATGTA+GGG | - | chr3.2:87616066-87616085 | MS.gene072847:CDS | 35.0% | |
TTCAACGCATTAGAAGTTGA+AGG | + | chr3.2:87619335-87619354 | None:intergenic | 35.0% | |
TTGTTCTAACAGAGAATGAG+AGG | - | chr3.2:87618315-87618334 | MS.gene072847:intron | 35.0% | |
TTTAACCGGCATGTTTATGT+AGG | - | chr3.2:87616065-87616084 | MS.gene072847:CDS | 35.0% | |
TTTATCTCCACATGTGTAAC+AGG | - | chr3.2:87618164-87618183 | MS.gene072847:intron | 35.0% | |
TTTATGTATAGAAGCTCGCA+TGG | + | chr3.2:87616214-87616233 | None:intergenic | 35.0% | |
TTTGCGTGTCAATTAATGGA+TGG | - | chr3.2:87615472-87615491 | MS.gene072847:intron | 35.0% | |
! | AATTGTTTGGACTTTGGGTT+AGG | - | chr3.2:87617818-87617837 | MS.gene072847:CDS | 35.0% |
! | ATTGTTTGGACTTTGGGTTA+GGG | - | chr3.2:87617819-87617838 | MS.gene072847:CDS | 35.0% |
! | GTATGTTTTCGGTTCAGTAT+AGG | - | chr3.2:87616670-87616689 | MS.gene072847:intron | 35.0% |
! | GTTGTTGTTGTTCTGTGAAA+TGG | + | chr3.2:87614879-87614898 | None:intergenic | 35.0% |
! | TGGAAAATTTTCTCTCTCTC+TGG | - | chr3.2:87615504-87615523 | MS.gene072847:intron | 35.0% |
! | TTTCTTAGAGCATCTCCAAT+GGG | - | chr3.2:87616778-87616797 | MS.gene072847:intron | 35.0% |
!! | CCTTAATGGTTGATAGTCAA+AGG | - | chr3.2:87617749-87617768 | MS.gene072847:intron | 35.0% |
!! | TAATGGTTGATAGTCAAAGG+AGG | - | chr3.2:87617752-87617771 | MS.gene072847:intron | 35.0% |
!! | TTTTCTTAGAGCATCTCCAA+TGG | - | chr3.2:87616777-87616796 | MS.gene072847:intron | 35.0% |
!!! | GGGTTGCTCTTATTTTTGTA+GGG | - | chr3.2:87618597-87618616 | MS.gene072847:intron | 35.0% |
!!! | TGGGTTGCTCTTATTTTTGT+AGG | - | chr3.2:87618596-87618615 | MS.gene072847:intron | 35.0% |
AACTCCCTACATAAACATGC+CGG | + | chr3.2:87616073-87616092 | None:intergenic | 40.0% | |
AATCTTTCTTCCTCCAATGG+AGG | + | chr3.2:87616842-87616861 | None:intergenic | 40.0% | |
ACAATGGTAGTTCCCTAACA+AGG | + | chr3.2:87617197-87617216 | None:intergenic | 40.0% | |
ACTGAACCGAAAACATACTG+CGG | + | chr3.2:87616668-87616687 | None:intergenic | 40.0% | |
ATAGTTGTCCGTTCCTTAAC+AGG | + | chr3.2:87616870-87616889 | None:intergenic | 40.0% | |
ATCTTTCTTCCTCCAATGGA+GGG | + | chr3.2:87616841-87616860 | None:intergenic | 40.0% | |
ATGTCTTACACGTTCCATGA+GGG | + | chr3.2:87618342-87618361 | None:intergenic | 40.0% | |
CAATTCATATGGGACAAGGA+AGG | + | chr3.2:87617803-87617822 | None:intergenic | 40.0% | |
CAGTCCTTACAAAGTCTAAC+AGG | - | chr3.2:87616485-87616504 | MS.gene072847:intron | 40.0% | |
CCGAAACGTGTATTAGAGAA+TGG | - | chr3.2:87618576-87618595 | MS.gene072847:intron | 40.0% | |
CCTCAGTACTTAAAGATTGG+TGG | - | chr3.2:87618697-87618716 | MS.gene072847:intron | 40.0% | |
CTCAATCTTTCTTCCTCCAA+TGG | + | chr3.2:87616845-87616864 | None:intergenic | 40.0% | |
GAAAATGGGTCAGTTATTCC+GGG | - | chr3.2:87615866-87615885 | MS.gene072847:intron | 40.0% | |
GATATGTGTTTGTGCCTTTC+AGG | - | chr3.2:87619211-87619230 | MS.gene072847:CDS | 40.0% | |
GATCTGTTTCAATTGCAACC+CGG | + | chr3.2:87619267-87619286 | None:intergenic | 40.0% | |
GCTTGATCATAGACAAGCAA+GGG | + | chr3.2:87618895-87618914 | None:intergenic | 40.0% | |
GGAGTCATTGAGTCCTTAAT+TGG | - | chr3.2:87617113-87617132 | MS.gene072847:intron | 40.0% | |
GGTTCAGATAATAGTATGGG+AGG | - | chr3.2:87618281-87618300 | MS.gene072847:intron | 40.0% | |
GTAGATCAATTATACCGGGA+CGG | + | chr3.2:87615678-87615697 | None:intergenic | 40.0% | |
TAAACAACTCGACCACTTCA+TGG | - | chr3.2:87615380-87615399 | MS.gene072847:intron | 40.0% | |
TAAGGACTCAATGACTCCAA+TGG | + | chr3.2:87617111-87617130 | None:intergenic | 40.0% | |
TATCCCAATATGAGACCCTA+TGG | + | chr3.2:87616696-87616715 | None:intergenic | 40.0% | |
TCAAAGAGGAACATGACTAC+AGG | - | chr3.2:87617291-87617310 | MS.gene072847:intron | 40.0% | |
TCAATCAAAGGAAGAGGAAC+TGG | - | chr3.2:87619300-87619319 | MS.gene072847:CDS | 40.0% | |
TCTCTCTCCAGAGTAACTAA+CGG | - | chr3.2:87616900-87616919 | MS.gene072847:intron | 40.0% | |
TGAAACTCCTGTTACACATG+TGG | + | chr3.2:87618174-87618193 | None:intergenic | 40.0% | |
TGATAGTCAAAGGAGGAACA+TGG | - | chr3.2:87617759-87617778 | MS.gene072847:intron | 40.0% | |
TGCTTGATCATAGACAAGCA+AGG | + | chr3.2:87618896-87618915 | None:intergenic | 40.0% | |
TGTCACGTGGGATCTATTTA+AGG | - | chr3.2:87617168-87617187 | MS.gene072847:intron | 40.0% | |
TTGTTAGGGAACTACCATTG+TGG | - | chr3.2:87617196-87617215 | MS.gene072847:intron | 40.0% | |
! | AGCATGAGTTGAAACAGGTA+CGG | - | chr3.2:87618369-87618388 | MS.gene072847:intron | 40.0% |
! | CCACCAATCTTTAAGTACTG+AGG | + | chr3.2:87618700-87618719 | None:intergenic | 40.0% |
! | GTTGTTGTTCTGTGAAATGG+TGG | + | chr3.2:87614876-87614895 | None:intergenic | 40.0% |
! | TTAGTTACTCTGGAGAGAGA+GGG | + | chr3.2:87616900-87616919 | None:intergenic | 40.0% |
! | TTCTTAGAGCATCTCCAATG+GGG | - | chr3.2:87616779-87616798 | MS.gene072847:intron | 40.0% |
!! | GAAGTTGGTACTGTTGTTGT+TGG | + | chr3.2:87615007-87615026 | None:intergenic | 40.0% |
ACGGAGGTAGTAATAGGGAA+AGG | + | chr3.2:87615659-87615678 | None:intergenic | 45.0% | |
AGGCCATAGGGTCTCATATT+GGG | - | chr3.2:87616690-87616709 | MS.gene072847:intron | 45.0% | |
CATGTCTTACACGTTCCATG+AGG | + | chr3.2:87618343-87618362 | None:intergenic | 45.0% | |
CCATGCAATGGAAGCAGTAA+TGG | - | chr3.2:87616445-87616464 | MS.gene072847:intron | 45.0% | |
CCATTACTGCTTCCATTGCA+TGG | + | chr3.2:87616448-87616467 | None:intergenic | 45.0% | |
CTCTCTCCAGAGTAACTAAC+GGG | - | chr3.2:87616901-87616920 | MS.gene072847:intron | 45.0% | |
CTGTTTGATGGAGGTTTGGA+TGG | - | chr3.2:87618260-87618279 | MS.gene072847:intron | 45.0% | |
CTTTCCAAACTGCACCTAAC+TGG | - | chr3.2:87614926-87614945 | MS.gene072847:intron | 45.0% | |
GGAGTGGTCCTTGTTAAGTA+AGG | + | chr3.2:87616808-87616827 | None:intergenic | 45.0% | |
GGTGGCAATCACATTCAAAG+TGG | - | chr3.2:87618715-87618734 | MS.gene072847:intron | 45.0% | |
GTGTAACAGGAGTTTCACCA+GGG | - | chr3.2:87618177-87618196 | MS.gene072847:intron | 45.0% | |
TACTCTGCGTTAGGACAACA+GGG | - | chr3.2:87615336-87615355 | MS.gene072847:intron | 45.0% | |
TAGGCCATAGGGTCTCATAT+TGG | - | chr3.2:87616689-87616708 | MS.gene072847:intron | 45.0% | |
TAGGTGCAGTTTGGAAAGAG+TGG | + | chr3.2:87614924-87614943 | None:intergenic | 45.0% | |
TCGGTTCAGTATAGGCCATA+GGG | - | chr3.2:87616678-87616697 | MS.gene072847:intron | 45.0% | |
TGCCTTATCCTCTTCCTGAA+AGG | + | chr3.2:87619228-87619247 | None:intergenic | 45.0% | |
TGCCTTTCAGGAAGAGGATA+AGG | - | chr3.2:87619223-87619242 | MS.gene072847:CDS | 45.0% | |
TGTAACAGGAGTTTCACCAG+GGG | - | chr3.2:87618178-87618197 | MS.gene072847:intron | 45.0% | |
TGTGTAACAGGAGTTTCACC+AGG | - | chr3.2:87618176-87618195 | MS.gene072847:intron | 45.0% | |
TGTTTGTGCCTTTCAGGAAG+AGG | - | chr3.2:87619217-87619236 | MS.gene072847:CDS | 45.0% | |
TTCAGGAAGAGGATAAGGCA+AGG | - | chr3.2:87619228-87619247 | MS.gene072847:CDS | 45.0% | |
TTCGGTTCAGTATAGGCCAT+AGG | - | chr3.2:87616677-87616696 | MS.gene072847:intron | 45.0% | |
TTGGAAAGAGTGGTGAGGAT+CGG | + | chr3.2:87614914-87614933 | None:intergenic | 45.0% | |
TTTCTCTCTCTCTGGACTCT+GGG | - | chr3.2:87615512-87615531 | MS.gene072847:intron | 45.0% | |
! | ACTGTTGTTGTTGGTTGTGG+CGG | + | chr3.2:87614998-87615017 | None:intergenic | 45.0% |
! | ATTTTACGCAAGAGACGAGC+TGG | - | chr3.2:87618654-87618673 | MS.gene072847:intron | 45.0% |
! | GGTACTGTTGTTGTTGGTTG+TGG | + | chr3.2:87615001-87615020 | None:intergenic | 45.0% |
! | GTTAGTTACTCTGGAGAGAG+AGG | + | chr3.2:87616901-87616920 | None:intergenic | 45.0% |
! | GTTCTGTGAAATGGTGGAGT+GGG | + | chr3.2:87614870-87614889 | None:intergenic | 45.0% |
! | TCTTAGAGCATCTCCAATGG+GGG | - | chr3.2:87616780-87616799 | MS.gene072847:intron | 45.0% |
! | TGGAAGCAGTAATGGCTTGT+TGG | - | chr3.2:87616453-87616472 | MS.gene072847:intron | 45.0% |
! | TGTTCTGTGAAATGGTGGAG+TGG | + | chr3.2:87614871-87614890 | None:intergenic | 45.0% |
! | TTGTCCTAACGCAGAGTACT+TGG | + | chr3.2:87615334-87615353 | None:intergenic | 45.0% |
! | TTTTCTCTCTCTCTGGACTC+TGG | - | chr3.2:87615511-87615530 | MS.gene072847:intron | 45.0% |
!! | GCTTGTAAGAGCATCCACAA+TGG | + | chr3.2:87617213-87617232 | None:intergenic | 45.0% |
!! | GGAAGCAGTAATGGCTTGTT+GGG | - | chr3.2:87616454-87616473 | MS.gene072847:intron | 45.0% |
!! | AATAATTTATAATGATATAA+TGG | - | chr3.2:87617431-87617450 | MS.gene072847:intron | 5.0% |
!! | CTTATTAATTAAAATAATTA+AGG | - | chr3.2:87615947-87615966 | MS.gene072847:CDS | 5.0% |
ACATGTCCGAGTCCATGCAA+TGG | - | chr3.2:87616433-87616452 | MS.gene072847:intron | 50.0% | |
AGACGAGCTGGAAAACTTCC+TGG | - | chr3.2:87618666-87618685 | MS.gene072847:intron | 50.0% | |
AGAGAATGAGAGGTCCCTCA+TGG | - | chr3.2:87618325-87618344 | MS.gene072847:intron | 50.0% | |
ATGGGTCAGTTATTCCGGGA+CGG | - | chr3.2:87615870-87615889 | MS.gene072847:intron | 50.0% | |
CAAAGGAGGAACATGGCTAC+AGG | - | chr3.2:87617766-87617785 | MS.gene072847:intron | 50.0% | |
CATGGACTCGGACATGTTGT+TGG | + | chr3.2:87616430-87616449 | None:intergenic | 50.0% | |
CTCCAATGGAGGGTCCTTAA+CGG | + | chr3.2:87616831-87616850 | None:intergenic | 50.0% | |
CTGCTTCCATTGCATGGACT+CGG | + | chr3.2:87616442-87616461 | None:intergenic | 50.0% | |
GAAGTCATCGACGACGTTAC+CGG | - | chr3.2:87615102-87615121 | MS.gene072847:intron | 50.0% | |
GATCAATTATACCGGGACGG+AGG | + | chr3.2:87615675-87615694 | None:intergenic | 50.0% | |
GCAGTTTGGAAAGAGTGGTG+AGG | + | chr3.2:87614919-87614938 | None:intergenic | 50.0% | |
GGAAGAGGATAAGGCAAGGT+TGG | - | chr3.2:87619232-87619251 | MS.gene072847:CDS | 50.0% | |
GTACTCTGCGTTAGGACAAC+AGG | - | chr3.2:87615335-87615354 | MS.gene072847:intron | 50.0% | |
GTTAAGTAAGGACCCCCCAT+TGG | + | chr3.2:87616796-87616815 | None:intergenic | 50.0% | |
GTTGCCAAGTACTCTGCGTT+AGG | - | chr3.2:87615327-87615346 | MS.gene072847:intron | 50.0% | |
TCCAATGGAGGGTCCTTAAC+GGG | + | chr3.2:87616830-87616849 | None:intergenic | 50.0% | |
TGAAACAGGTACGGTCCTCA+TGG | - | chr3.2:87618378-87618397 | MS.gene072847:intron | 50.0% | |
TGACTTCGCTGTGGTTTCGA+TGG | + | chr3.2:87615089-87615108 | None:intergenic | 50.0% | |
TGAGCCAGTTAGGTGCAGTT+TGG | + | chr3.2:87614933-87614952 | None:intergenic | 50.0% | |
TGGCAGAAAGCGAAACGCAA+AGG | - | chr3.2:87615180-87615199 | MS.gene072847:intron | 50.0% | |
TGGGGGGTCCTTACTTAACA+AGG | - | chr3.2:87616797-87616816 | MS.gene072847:intron | 50.0% | |
! | AGTACTGAGGTTGTGTCACC+AGG | + | chr3.2:87618687-87618706 | None:intergenic | 50.0% |
! | CTGCTGCCGCAGTATGTTTT+CGG | - | chr3.2:87616659-87616678 | MS.gene072847:intron | 50.0% |
! | CTTAGAGCATCTCCAATGGG+GGG | - | chr3.2:87616781-87616800 | MS.gene072847:intron | 50.0% |
!! | AATGGTGGAGTGGGTTGTCT+TGG | + | chr3.2:87614861-87614880 | None:intergenic | 50.0% |
!! | CAAGGTTGGTGCAAGAAACC+GGG | - | chr3.2:87619246-87619265 | MS.gene072847:CDS | 50.0% |
!! | GCAAGGTTGGTGCAAGAAAC+CGG | - | chr3.2:87619245-87619264 | MS.gene072847:CDS | 50.0% |
ACAAGGACCACTCCCCGTTA+AGG | - | chr3.2:87616814-87616833 | MS.gene072847:intron | 55.0% | |
ACAGGAGTTTCACCAGGGGA+AGG | - | chr3.2:87618182-87618201 | MS.gene072847:intron | 55.0% | |
ACCGGGACGGAGGTAGTAAT+AGG | + | chr3.2:87615665-87615684 | None:intergenic | 55.0% | |
AGAGCCATTGACCGGAGGAT+TGG | + | chr3.2:87615053-87615072 | None:intergenic | 55.0% | |
ATCCTGGGCAACTGGTCAAC+CGG | + | chr3.2:87615276-87615295 | None:intergenic | 55.0% | |
ATGCGACTGCGACATCAACG+AGG | + | chr3.2:87616372-87616391 | None:intergenic | 55.0% | |
CCAATGGAGGGTCCTTAACG+GGG | + | chr3.2:87616829-87616848 | None:intergenic | 55.0% | |
CCCTATTACTACCTCCGTCC+CGG | - | chr3.2:87615661-87615680 | MS.gene072847:CDS | 55.0% | |
CCGGGACGGAGGTAGTAATA+GGG | + | chr3.2:87615664-87615683 | None:intergenic | 55.0% | |
CGTTAAGGACCCTCCATTGG+AGG | - | chr3.2:87616829-87616848 | MS.gene072847:intron | 55.0% | |
CGTTGAAGAGCAAGCGCAAG+AGG | - | chr3.2:87619348-87619367 | MS.gene072847:CDS | 55.0% | |
CTGTGGTTTCGATGGAGGAC+AGG | + | chr3.2:87615081-87615100 | None:intergenic | 55.0% | |
CTTCGCTGTGGTTTCGATGG+AGG | + | chr3.2:87615086-87615105 | None:intergenic | 55.0% | |
GAAAGAGTGGTGAGGATCGG+AGG | + | chr3.2:87614911-87614930 | None:intergenic | 55.0% | |
GAGCCATTGACCGGAGGATT+GGG | + | chr3.2:87615052-87615071 | None:intergenic | 55.0% | |
GGTATGAAGGCCGAGGAAAG+CGG | - | chr3.2:87615129-87615148 | MS.gene072847:intron | 55.0% | |
GGTTTCGATGGAGGACAGGA+CGG | + | chr3.2:87615077-87615096 | None:intergenic | 55.0% | |
GTCAGTTATTCCGGGACGGA+GGG | - | chr3.2:87615874-87615893 | MS.gene072847:intron | 55.0% | |
GTGGGACCCGTTAGTTACTC+TGG | + | chr3.2:87616910-87616929 | None:intergenic | 55.0% | |
GTGTTTGAGAATCGCCACGC+CGG | - | chr3.2:87615254-87615273 | MS.gene072847:intron | 55.0% | |
GTTCCCAATCCTCCGGTCAA+TGG | - | chr3.2:87615046-87615065 | MS.gene072847:CDS | 55.0% | |
GTTTCGATGGAGGACAGGAC+GGG | + | chr3.2:87615076-87615095 | None:intergenic | 55.0% | |
TGTTGCCTCACCGCTTTCCT+CGG | + | chr3.2:87615142-87615161 | None:intergenic | 55.0% | |
TTGACCGGAGGATTGGGAAC+CGG | + | chr3.2:87615046-87615065 | None:intergenic | 55.0% | |
! | GGTGTCGAGGTTGAGGAAGT+TGG | + | chr3.2:87615022-87615041 | None:intergenic | 55.0% |
! | GGTGTCGAGGTTGCGAAGAA+GGG | + | chr3.2:87614962-87614981 | None:intergenic | 55.0% |
! | GTTGTTGTTGGTTGTGGCGG+TGG | + | chr3.2:87614995-87615014 | None:intergenic | 55.0% |
! | GTTTCACCAGGGGAAGGTAC+AGG | - | chr3.2:87618188-87618207 | MS.gene072847:intron | 55.0% |
! | TGGTGTCGAGGTTGCGAAGA+AGG | + | chr3.2:87614963-87614982 | None:intergenic | 55.0% |
!! | AGGGCGTTGTTGAGCCAGTT+AGG | + | chr3.2:87614943-87614962 | None:intergenic | 55.0% |
AGGACGGGAGAGCCATTGAC+CGG | + | chr3.2:87615061-87615080 | None:intergenic | 60.0% | |
CAGCGGAGGGAGTGATGAAC+TGG | - | chr3.2:87615160-87615179 | MS.gene072847:intron | 60.0% | |
CCCCGTTAAGGACCCTCCAT+TGG | - | chr3.2:87616826-87616845 | MS.gene072847:intron | 60.0% | |
CGTCGTCGATGACTTCGCTG+TGG | + | chr3.2:87615098-87615117 | None:intergenic | 60.0% | |
CTCTCTCTCTGGACTCTGGG+TGG | - | chr3.2:87615515-87615534 | MS.gene072847:intron | 60.0% | |
GAGTGGTGAGGATCGGAGGT+TGG | + | chr3.2:87614907-87614926 | None:intergenic | 60.0% | |
GCATAGTACTCCCTCCGTCC+CGG | + | chr3.2:87615887-87615906 | None:intergenic | 60.0% | |
GGAAAGCGGTGAGGCAACAG+CGG | - | chr3.2:87615143-87615162 | MS.gene072847:intron | 60.0% | |
GGTCAGTTATTCCGGGACGG+AGG | - | chr3.2:87615873-87615892 | MS.gene072847:intron | 60.0% | |
GTTGCTCCTGTACCTTCCCC+TGG | + | chr3.2:87618197-87618216 | None:intergenic | 60.0% | |
TTCCTCAACCTCGACACCGC+CGG | - | chr3.2:87615024-87615043 | MS.gene072847:CDS | 60.0% | |
!! | CGTTACCGGCGCTGGTATGA+AGG | - | chr3.2:87615116-87615135 | MS.gene072847:intron | 60.0% |
!! | TGGCGTTGACGTTGGTGTCG+AGG | + | chr3.2:87614975-87614994 | None:intergenic | 60.0% |
AAGCGGTGAGGCAACAGCGG+AGG | - | chr3.2:87615146-87615165 | MS.gene072847:intron | 65.0% | |
ACCGGAGGATTGGGAACCGG+CGG | + | chr3.2:87615043-87615062 | None:intergenic | 65.0% | |
ACGGGAGAGCCATTGACCGG+AGG | + | chr3.2:87615058-87615077 | None:intergenic | 65.0% | |
AGCGGTGAGGCAACAGCGGA+GGG | - | chr3.2:87615147-87615166 | MS.gene072847:intron | 65.0% | |
ATCGACGACGTTACCGGCGC+TGG | - | chr3.2:87615108-87615127 | MS.gene072847:intron | 65.0% | |
CTCGGCCTTCATACCAGCGC+CGG | + | chr3.2:87615124-87615143 | None:intergenic | 65.0% | |
GAAGGCCGAGGAAAGCGGTG+AGG | - | chr3.2:87615134-87615153 | MS.gene072847:intron | 65.0% | |
GGAGGGTCCTTAACGGGGAG+TGG | + | chr3.2:87616824-87616843 | None:intergenic | 65.0% | |
! | AACCGGCGGTGTCGAGGTTG+AGG | + | chr3.2:87615029-87615048 | None:intergenic | 65.0% |
! | ATTGGGAACCGGCGGTGTCG+AGG | + | chr3.2:87615035-87615054 | None:intergenic | 65.0% |
!! | ACCGCCGGTTCCCAATCCTC+CGG | - | chr3.2:87615039-87615058 | MS.gene072847:CDS | 65.0% |
!! | GAGCGTCGATCCTGGGCAAC+TGG | + | chr3.2:87615284-87615303 | None:intergenic | 65.0% |
!! | GCCAGCTGAGCGTCGATCCT+GGG | + | chr3.2:87615291-87615310 | None:intergenic | 65.0% |
!! | TGCCAGCTGAGCGTCGATCC+TGG | + | chr3.2:87615292-87615311 | None:intergenic | 65.0% |
!! | TGTGGCGGTGGCGTTGACGT+TGG | + | chr3.2:87614983-87615002 | None:intergenic | 65.0% |
GCCCAGGATCGACGCTCAGC+TGG | - | chr3.2:87615287-87615306 | MS.gene072847:intron | 70.0% | |
GGGCAACTGGTCAACCGGCG+TGG | + | chr3.2:87615271-87615290 | None:intergenic | 70.0% | |
! | CGCCGGTTGACCAGTTGCCC+AGG | - | chr3.2:87615271-87615290 | MS.gene072847:intron | 70.0% |
!! | CGGCGCTGGTATGAAGGCCG+AGG | - | chr3.2:87615122-87615141 | MS.gene072847:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.2 | gene | 87614844 | 87619462 | 87614844 | ID=MS.gene072847 |
chr3.2 | mRNA | 87614844 | 87619462 | 87614844 | ID=MS.gene072847.t1;Parent=MS.gene072847 |
chr3.2 | exon | 87618905 | 87619462 | 87618905 | ID=MS.gene072847.t1.exon1;Parent=MS.gene072847.t1 |
chr3.2 | CDS | 87618905 | 87619462 | 87618905 | ID=cds.MS.gene072847.t1;Parent=MS.gene072847.t1 |
chr3.2 | exon | 87617800 | 87617920 | 87617800 | ID=MS.gene072847.t1.exon2;Parent=MS.gene072847.t1 |
chr3.2 | CDS | 87617800 | 87617920 | 87617800 | ID=cds.MS.gene072847.t1;Parent=MS.gene072847.t1 |
chr3.2 | exon | 87615921 | 87616120 | 87615921 | ID=MS.gene072847.t1.exon3;Parent=MS.gene072847.t1 |
chr3.2 | CDS | 87615921 | 87616120 | 87615921 | ID=cds.MS.gene072847.t1;Parent=MS.gene072847.t1 |
chr3.2 | exon | 87615557 | 87615688 | 87615557 | ID=MS.gene072847.t1.exon4;Parent=MS.gene072847.t1 |
chr3.2 | CDS | 87615557 | 87615688 | 87615557 | ID=cds.MS.gene072847.t1;Parent=MS.gene072847.t1 |
chr3.2 | exon | 87614937 | 87615073 | 87614937 | ID=MS.gene072847.t1.exon5;Parent=MS.gene072847.t1 |
chr3.2 | CDS | 87614937 | 87615073 | 87614937 | ID=cds.MS.gene072847.t1;Parent=MS.gene072847.t1 |
chr3.2 | exon | 87614844 | 87614847 | 87614844 | ID=MS.gene072847.t1.exon6;Parent=MS.gene072847.t1 |
chr3.2 | CDS | 87614844 | 87614847 | 87614844 | ID=cds.MS.gene072847.t1;Parent=MS.gene072847.t1 |
Gene Sequence |
Protein sequence |