AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene072847


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072847.t1 MTR_3g106400 96.084 383 3 2 1 383 1 371 0.0 758
MS.gene072847.t1 MTR_3g106400 96.084 383 3 2 1 383 1 371 0.0 758
MS.gene072847.t1 MTR_3g106400 96.084 383 3 2 1 383 1 371 0.0 757
MS.gene072847.t1 MTR_1g012960 66.970 439 86 8 1 383 1 436 0.0 557
MS.gene072847.t1 MTR_2g461240 66.006 353 79 6 31 382 42 354 1.73e-159 452
MS.gene072847.t1 MTR_4g116545 79.026 267 48 3 119 383 71 331 2.54e-152 433
MS.gene072847.t1 MTR_4g116545 80.709 254 41 3 119 370 71 318 3.76e-149 425
MS.gene072847.t1 MTR_5g011070 67.528 271 76 3 119 383 28 292 1.45e-128 372
MS.gene072847.t1 MTR_1g084060 35.249 261 122 8 119 367 20 245 6.90e-31 119
MS.gene072847.t1 MTR_1g084060 35.249 261 122 8 119 367 20 245 1.44e-30 119
MS.gene072847.t1 MTR_2g024390 30.400 250 143 4 119 367 118 337 3.73e-28 114
MS.gene072847.t1 MTR_1g017080 32.669 251 139 7 119 367 120 342 1.34e-25 107
MS.gene072847.t1 MTR_5g033720 32.669 251 138 6 119 367 73 294 2.50e-25 105
MS.gene072847.t1 MTR_5g085860 30.588 255 133 6 119 367 47 263 2.27e-24 102
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072847.t1 AT5G25220 64.989 437 81 12 1 383 1 419 2.18e-180 508
MS.gene072847.t1 AT5G25220 64.908 436 81 12 1 382 1 418 1.04e-179 506
MS.gene072847.t1 AT5G11060 67.233 412 75 12 1 382 1 382 1.07e-173 489
MS.gene072847.t1 AT4G32040 62.895 380 126 8 6 383 13 379 3.35e-156 445
MS.gene072847.t1 AT4G32040 62.895 380 126 8 6 383 13 379 3.41e-156 445
MS.gene072847.t1 AT1G62990 62.759 290 99 4 96 382 7 290 4.04e-127 367
MS.gene072847.t1 AT1G70510 33.077 260 137 8 112 367 63 289 9.38e-30 117
MS.gene072847.t1 AT1G23380 34.630 257 123 9 119 367 86 305 1.25e-28 114
MS.gene072847.t1 AT1G70510 31.923 260 144 7 112 367 63 293 3.06e-28 113
MS.gene072847.t1 AT1G23380 34.363 259 123 10 119 367 86 307 8.78e-27 109
MS.gene072847.t1 AT4G08150 33.205 259 130 8 119 367 135 360 8.32e-26 107
MS.gene072847.t1 AT1G62360 34.400 250 135 6 119 367 122 343 2.08e-25 106

Find 119 sgRNAs with CRISPR-Local

Find 327 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATAATAGTATGGGAGGATT+TGG 0.320582 3.2:-87615997 MS.gene072847:CDS
TGCCAGCTGAGCGTCGATCC+TGG 0.345057 3.2:+87618995 None:intergenic
TGTACCTGTTAGACTTTGTA+AGG 0.355039 3.2:+87617795 None:intergenic
GTACTCTGCGTTAGGACAAC+AGG 0.363398 3.2:-87618949 MS.gene072847:CDS
GGATGGTTCAGATAATAGTA+TGG 0.368115 3.2:-87616007 MS.gene072847:CDS
CTTTCCAAACTGCACCTAAC+TGG 0.380352 3.2:-87619358 MS.gene072847:CDS
AATTGAAACAGATCAATAAC+TGG 0.381851 3.2:-87615011 MS.gene072847:CDS
GTTGTTGTTGTTCTGTGAAA+TGG 0.389827 3.2:+87619408 None:intergenic
TGCCTTTCAGGAAGAGGATA+AGG 0.392331 3.2:-87615061 MS.gene072847:intron
CAGTCCTTACAAAGTCTAAC+AGG 0.396414 3.2:-87617799 MS.gene072847:intron
GAGCGTCGATCCTGGGCAAC+TGG 0.397329 3.2:+87619003 None:intergenic
TAAACAACTCGACCACTTCA+TGG 0.399427 3.2:-87618904 MS.gene072847:intron
GAGCCATTGACCGGAGGATT+GGG 0.403988 3.2:+87619235 None:intergenic
GCAAGGTTGGTGCAAGAAAC+CGG 0.410624 3.2:-87615039 MS.gene072847:CDS
TGGTGTCGAGGTTGCGAAGA+AGG 0.418558 3.2:+87619324 None:intergenic
AGACGAGCTGGAAAACTTCC+TGG 0.420513 3.2:-87615618 MS.gene072847:CDS
AGTGATGTTAATCTGTTTGA+TGG 0.421723 3.2:-87616036 MS.gene072847:CDS
AGGGCGTTGTTGAGCCAGTT+AGG 0.423606 3.2:+87619344 None:intergenic
GAAGTCATCGACGACGTTAC+CGG 0.424039 3.2:-87619182 MS.gene072847:CDS
TGAGCCAGTTAGGTGCAGTT+TGG 0.424789 3.2:+87619354 None:intergenic
GGAAGCAGTAATGGCTTGTT+GGG 0.426655 3.2:-87617830 MS.gene072847:CDS
GTTCCCAATCCTCCGGTCAA+TGG 0.427348 3.2:-87619238 MS.gene072847:CDS
AATGGTGGAGTGGGTTGTCT+TGG 0.431285 3.2:+87619426 None:intergenic
TGGAAGCAGTAATGGCTTGT+TGG 0.435199 3.2:-87617831 MS.gene072847:CDS
GAAACGCAAAGGTGAAATAA+TGG 0.435340 3.2:-87619093 MS.gene072847:CDS
ATCCTGGGCAACTGGTCAAC+CGG 0.438877 3.2:+87619011 None:intergenic
TCAATCAAAGGAAGAGGAAC+TGG 0.439251 3.2:-87614984 MS.gene072847:CDS
GAAGTTGGTACTGTTGTTGT+TGG 0.439599 3.2:+87619280 None:intergenic
GCCCAGGATCGACGCTCAGC+TGG 0.442737 3.2:-87618997 MS.gene072847:CDS
TAATCTGTTTGATGGAGGTT+TGG 0.446200 3.2:-87616028 MS.gene072847:CDS
AGAGCCATTGACCGGAGGAT+TGG 0.446472 3.2:+87619234 None:intergenic
GCCAGCTGAGCGTCGATCCT+GGG 0.452139 3.2:+87618996 None:intergenic
GGTACTGTTGTTGTTGGTTG+TGG 0.453246 3.2:+87619286 None:intergenic
ATTAAAGCATGAGTTGAAAC+AGG 0.455099 3.2:-87615920 MS.gene072847:intron
ATAGAAGCTGTTCATACAAC+GGG 0.456842 3.2:+87619066 None:intergenic
TTGTCCTAACGCAGAGTACT+TGG 0.459203 3.2:+87618953 None:intergenic
AACCGGCGGTGTCGAGGTTG+AGG 0.460908 3.2:+87619258 None:intergenic
CAGCGGAGGGAGTGATGAAC+TGG 0.464161 3.2:-87619124 MS.gene072847:CDS
CGCCGGTTGACCAGTTGCCC+AGG 0.465203 3.2:-87619013 MS.gene072847:CDS
CAACCTCAGTACTTAAAGAT+TGG 0.466078 3.2:-87615590 MS.gene072847:CDS
TTCAACGCATTAGAAGTTGA+AGG 0.469895 3.2:+87614952 None:intergenic
GTTGTTGTTGGTTGTGGCGG+TGG 0.469972 3.2:+87619292 None:intergenic
CCATGCAATGGAAGCAGTAA+TGG 0.471444 3.2:-87617839 MS.gene072847:CDS
GTTGCTCCTGTACCTTCCCC+TGG 0.471752 3.2:+87616090 None:intergenic
CTGTTTGATGGAGGTTTGGA+TGG 0.472583 3.2:-87616024 MS.gene072847:CDS
CATGGACTCGGACATGTTGT+TGG 0.486135 3.2:+87617857 None:intergenic
AGAGTTCTTACAGTAGGATA+AGG 0.489180 3.2:+87615546 None:intergenic
CGTTACCGGCGCTGGTATGA+AGG 0.491895 3.2:-87619168 MS.gene072847:CDS
GTTGCCAAGTACTCTGCGTT+AGG 0.491986 3.2:-87618957 MS.gene072847:CDS
GTTTCACCAGGGGAAGGTAC+AGG 0.498577 3.2:-87616096 MS.gene072847:CDS
AGTACTGAGGTTGTGTCACC+AGG 0.501554 3.2:+87615600 None:intergenic
CCATTACTGCTTCCATTGCA+TGG 0.504180 3.2:+87617839 None:intergenic
AGGACGGGAGAGCCATTGAC+CGG 0.509843 3.2:+87619226 None:intergenic
CTGTGGTTTCGATGGAGGAC+AGG 0.510607 3.2:+87619206 None:intergenic
GTTCTGTGAAATGGTGGAGT+GGG 0.511127 3.2:+87619417 None:intergenic
AAGCGGTGAGGCAACAGCGG+AGG 0.511964 3.2:-87619138 MS.gene072847:CDS
CTGCTTCCATTGCATGGACT+CGG 0.514678 3.2:+87617845 None:intergenic
TTGACCGGAGGATTGGGAAC+CGG 0.515320 3.2:+87619241 None:intergenic
TGTTGCCTCACCGCTTTCCT+CGG 0.515416 3.2:+87619145 None:intergenic
TGACTTCGCTGTGGTTTCGA+TGG 0.516848 3.2:+87619198 None:intergenic
TCATTCTCTGTTAGAACAAG+AGG 0.524064 3.2:+87615973 None:intergenic
GGTGTCGAGGTTGCGAAGAA+GGG 0.525959 3.2:+87619325 None:intergenic
GAAAATTGTGGACATAAGAG+AGG 0.527462 3.2:-87615655 MS.gene072847:CDS
GGTGTCGAGGTTGAGGAAGT+TGG 0.532035 3.2:+87619265 None:intergenic
ATTGGGAACCGGCGGTGTCG+AGG 0.533014 3.2:+87619252 None:intergenic
GATGGTTCAGATAATAGTAT+GGG 0.538925 3.2:-87616006 MS.gene072847:CDS
CGTTGAAGAGCAAGCGCAAG+AGG 0.539470 3.2:-87614936 MS.gene072847:intron
GGAAGAGGATAAGGCAAGGT+TGG 0.540633 3.2:-87615052 MS.gene072847:CDS
GTTGTTGTTCTGTGAAATGG+TGG 0.541053 3.2:+87619411 None:intergenic
GAGTGGTGAGGATCGGAGGT+TGG 0.542790 3.2:+87619380 None:intergenic
CTTCGCTGTGGTTTCGATGG+AGG 0.543312 3.2:+87619201 None:intergenic
CTCGGCCTTCATACCAGCGC+CGG 0.547542 3.2:+87619163 None:intergenic
CCTCAGTACTTAAAGATTGG+TGG 0.548243 3.2:-87615587 MS.gene072847:CDS
GTTTCGATGGAGGACAGGAC+GGG 0.549706 3.2:+87619211 None:intergenic
GAAAGAGTGGTGAGGATCGG+AGG 0.551627 3.2:+87619376 None:intergenic
ATCGACGACGTTACCGGCGC+TGG 0.558499 3.2:-87619176 MS.gene072847:CDS
AGCGGTGAGGCAACAGCGGA+GGG 0.559972 3.2:-87619137 MS.gene072847:CDS
AGAGAATGAGAGGTCCCTCA+TGG 0.567340 3.2:-87615959 MS.gene072847:CDS
ATAACTGGTTTATCAATCAA+AGG 0.567448 3.2:-87614996 MS.gene072847:CDS
TGTTCTGTGAAATGGTGGAG+TGG 0.567991 3.2:+87619416 None:intergenic
CAAGGTTGGTGCAAGAAACC+GGG 0.570646 3.2:-87615038 MS.gene072847:CDS
ACCGCCGGTTCCCAATCCTC+CGG 0.570735 3.2:-87619245 MS.gene072847:CDS
TTCCTCAACCTCGACACCGC+CGG 0.572536 3.2:-87619260 MS.gene072847:CDS
CGGCGCTGGTATGAAGGCCG+AGG 0.574579 3.2:-87619162 MS.gene072847:CDS
GGTTTATCAATCAAAGGAAG+AGG 0.579093 3.2:-87614990 MS.gene072847:CDS
TTGGAAAGAGTGGTGAGGAT+CGG 0.583594 3.2:+87619373 None:intergenic
CCACCAATCTTTAAGTACTG+AGG 0.588799 3.2:+87615587 None:intergenic
GGTTTCGATGGAGGACAGGA+CGG 0.592132 3.2:+87619210 None:intergenic
AAAGGTAAAATACCATGAAG+TGG 0.598924 3.2:+87618892 None:intergenic
TAGGTGCAGTTTGGAAAGAG+TGG 0.600373 3.2:+87619363 None:intergenic
TGGCGTTGACGTTGGTGTCG+AGG 0.601937 3.2:+87619312 None:intergenic
GGGTTATAAAGAGAAAATTG+TGG 0.610746 3.2:-87615667 MS.gene072847:CDS
TTGTTCTAACAGAGAATGAG+AGG 0.611125 3.2:-87615969 MS.gene072847:CDS
TGTGGCGGTGGCGTTGACGT+TGG 0.611369 3.2:+87619304 None:intergenic
GGTTCAGATAATAGTATGGG+AGG 0.618510 3.2:-87616003 MS.gene072847:CDS
GATGTTAATCTGTTTGATGG+AGG 0.621633 3.2:-87616033 MS.gene072847:CDS
TGTGTAACAGGAGTTTCACC+AGG 0.621894 3.2:-87616108 MS.gene072847:intron
TGGCAGAAAGCGAAACGCAA+AGG 0.622833 3.2:-87619104 MS.gene072847:CDS
GATCTGTTTCAATTGCAACC+CGG 0.623157 3.2:+87615020 None:intergenic
ACCGGAGGATTGGGAACCGG+CGG 0.625286 3.2:+87619244 None:intergenic
GGAAAGCGGTGAGGCAACAG+CGG 0.626255 3.2:-87619141 MS.gene072847:CDS
GGGCAACTGGTCAACCGGCG+TGG 0.628223 3.2:+87619016 None:intergenic
ATGTCTTACACGTTCCATGA+GGG 0.635061 3.2:+87615945 None:intergenic
ACAGGAGTTTCACCAGGGGA+AGG 0.636992 3.2:-87616102 MS.gene072847:intron
ACATGTCCGAGTCCATGCAA+TGG 0.642083 3.2:-87617851 MS.gene072847:CDS
ACTGTTGTTGTTGGTTGTGG+CGG 0.642777 3.2:+87619289 None:intergenic
CATGTCTTACACGTTCCATG+AGG 0.645094 3.2:+87615944 None:intergenic
GATAGAAGCTGTTCATACAA+CGG 0.647941 3.2:+87619065 None:intergenic
TACTCTGCGTTAGGACAACA+GGG 0.650241 3.2:-87618948 MS.gene072847:CDS
GGTATGAAGGCCGAGGAAAG+CGG 0.652275 3.2:-87619155 MS.gene072847:CDS
ACGGGAGAGCCATTGACCGG+AGG 0.652694 3.2:+87619229 None:intergenic
GTGTTTGAGAATCGCCACGC+CGG 0.654940 3.2:-87619030 MS.gene072847:CDS
TTCAGGAAGAGGATAAGGCA+AGG 0.655439 3.2:-87615056 MS.gene072847:intron
GGTGGCAATCACATTCAAAG+TGG 0.680210 3.2:-87615569 MS.gene072847:CDS
CGTCGTCGATGACTTCGCTG+TGG 0.682559 3.2:+87619189 None:intergenic
GCAGTTTGGAAAGAGTGGTG+AGG 0.695329 3.2:+87619368 None:intergenic
GTGTAACAGGAGTTTCACCA+GGG 0.706920 3.2:-87616107 MS.gene072847:intron
GAAGGCCGAGGAAAGCGGTG+AGG 0.708487 3.2:-87619150 MS.gene072847:CDS
TGTAACAGGAGTTTCACCAG+GGG 0.775474 3.2:-87616106 MS.gene072847:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAATAATAATGATTAGT+GGG + chr3.2:87619181-87619200 None:intergenic 10.0%
!!! AATTACAATATTTTTTTGTA+TGG - chr3.2:87616128-87616147 MS.gene072847:intron 10.0%
!! AATGATAATTAAGATCTTAA+TGG - chr3.2:87617261-87617280 MS.gene072847:intron 15.0%
!! AATTTATTAGTAAGATAGAA+TGG - chr3.2:87617906-87617925 MS.gene072847:intron 15.0%
!! ATTTAGTGTTATATTGTATT+GGG - chr3.2:87615783-87615802 MS.gene072847:intron 15.0%
!! CTAAAAATAATAATGATTAG+TGG + chr3.2:87619182-87619201 None:intergenic 15.0%
!! CTAATAAATTATTCATTATG+TGG + chr3.2:87617896-87617915 None:intergenic 15.0%
!! TATTTAGTGTTATATTGTAT+TGG - chr3.2:87615782-87615801 MS.gene072847:intron 15.0%
!! TTTGTAAATATTATTGAGAA+AGG + chr3.2:87615413-87615432 None:intergenic 15.0%
!!! AATTTTCTGCAATAATATTT+TGG - chr3.2:87616184-87616203 MS.gene072847:intron 15.0%
!!! AGAAAAGTGTATAAATAAAT+AGG - chr3.2:87615719-87615738 MS.gene072847:intron 15.0%
!!! ATAATTTATTTTCTGTTGTA+TGG - chr3.2:87616328-87616347 MS.gene072847:intron 15.0%
!!! ATTTATACTTTTCTCAATAT+AGG - chr3.2:87616719-87616738 MS.gene072847:intron 15.0%
!!! CATATTTAAATACTTTTCAT+TGG - chr3.2:87617066-87617085 MS.gene072847:intron 15.0%
!!! TATTTTTTATTTTTTTGTCG+TGG - chr3.2:87616262-87616281 MS.gene072847:intron 15.0%
!!! TTTAATAAAAGTACCAATTA+AGG + chr3.2:87617129-87617148 None:intergenic 15.0%
!!! TTTATTACTTTTTTAAACGT+GGG + chr3.2:87616928-87616947 None:intergenic 15.0%
!!! TTTTATTACTTTTTTAAACG+TGG + chr3.2:87616929-87616948 None:intergenic 15.0%
!! AAAATAATTAAGGTAGCTAA+TGG - chr3.2:87615957-87615976 MS.gene072847:CDS 20.0%
!! AAAGTGGAATATATTGTATT+GGG - chr3.2:87615742-87615761 MS.gene072847:intron 20.0%
!! AAATAACATGCTAAAAAGTA+AGG + chr3.2:87618019-87618038 None:intergenic 20.0%
!! AATTAGTACTCATATCTAAT+GGG + chr3.2:87618135-87618154 None:intergenic 20.0%
!! AGTTGTATTGAAAATTGAAA+TGG - chr3.2:87615815-87615834 MS.gene072847:intron 20.0%
!! ATTATTCATTATGTGGTTTA+AGG + chr3.2:87617889-87617908 None:intergenic 20.0%
!! GATTACATTAAATGTTGAAT+AGG - chr3.2:87618400-87618419 MS.gene072847:intron 20.0%
!! GTTTAATATGTAAAGATAGT+GGG - chr3.2:87617042-87617061 MS.gene072847:intron 20.0%
!! TAAATTATTCATGACGTATT+TGG + chr3.2:87617420-87617439 None:intergenic 20.0%
!! TAATTAGTACTCATATCTAA+TGG + chr3.2:87618136-87618155 None:intergenic 20.0%
!! TATGTTAAAATAAGCTCAAA+AGG + chr3.2:87616024-87616043 None:intergenic 20.0%
!! TGTATAAATAAATAGGAAAG+TGG - chr3.2:87615726-87615745 MS.gene072847:intron 20.0%
!! TGTTTAATATGTAAAGATAG+TGG - chr3.2:87617041-87617060 MS.gene072847:intron 20.0%
!! TTCTCAATATAGGAATTATA+CGG - chr3.2:87616729-87616748 MS.gene072847:intron 20.0%
!!! ACTTATTTCTAATTCAAGAT+CGG + chr3.2:87619432-87619451 None:intergenic 20.0%
!!! CATATTGATTAATATCCAAT+TGG + chr3.2:87617689-87617708 None:intergenic 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG - chr3.2:87615852-87615871 MS.gene072847:intron 20.0%
!!! GCAAAACTTAAATTTTAACT+CGG - chr3.2:87615562-87615581 MS.gene072847:CDS 20.0%
!!! GCAAATTTAAGATTATGAAA+AGG + chr3.2:87619397-87619416 None:intergenic 20.0%
!!! TACAATATTTTTTTGTATGG+TGG - chr3.2:87616131-87616150 MS.gene072847:intron 20.0%
!!! TATTACTCATTTTTACAAGT+GGG + chr3.2:87617008-87617027 None:intergenic 20.0%
! AAAACATAATTACACTCCAT+TGG + chr3.2:87616243-87616262 None:intergenic 25.0%
! AAAGTCCAAACAATTCATAT+GGG + chr3.2:87617813-87617832 None:intergenic 25.0%
! AACATCATAGTTATACTGTA+TGG - chr3.2:87617959-87617978 MS.gene072847:intron 25.0%
! AACATTTAATGTAATCCATG+AGG + chr3.2:87618396-87618415 None:intergenic 25.0%
! AAGCTATCTTAGATATCTTA+CGG - chr3.2:87619026-87619045 MS.gene072847:CDS 25.0%
! AATTCTGTCAAAAAAAAGCA+AGG + chr3.2:87617994-87618013 None:intergenic 25.0%
! AATTGAAACAGATCAATAAC+TGG - chr3.2:87619273-87619292 MS.gene072847:CDS 25.0%
! ACAATTCTGTCAAAAAAACA+AGG + chr3.2:87617567-87617586 None:intergenic 25.0%
! AGGAATAAGCAACAAAAATT+TGG + chr3.2:87616603-87616622 None:intergenic 25.0%
! ATATGAATTGTTTGGACTTT+GGG - chr3.2:87617813-87617832 MS.gene072847:CDS 25.0%
! CATTAAATGTTGAATAGGAA+AGG - chr3.2:87618405-87618424 MS.gene072847:intron 25.0%
! CATTCGTGTAATTTATCTTT+AGG + chr3.2:87616623-87616642 None:intergenic 25.0%
! CCTGTACATATGAATTATTT+GGG - chr3.2:87617335-87617354 MS.gene072847:intron 25.0%
! GAAAGTGGAATATATTGTAT+TGG - chr3.2:87615741-87615760 MS.gene072847:intron 25.0%
! GAATTAGAAATAAGTAATGC+AGG - chr3.2:87619437-87619456 MS.gene072847:CDS 25.0%
! GTAATAAAATGTGTACTACT+TGG - chr3.2:87616940-87616959 MS.gene072847:intron 25.0%
! GTATCTATATTCAAAGTACA+TGG + chr3.2:87618052-87618071 None:intergenic 25.0%
! TAAATATTTGAGAACCTGAT+TGG + chr3.2:87619081-87619100 None:intergenic 25.0%
! TATTACTTCTTTATGCAAGT+GGG + chr3.2:87616967-87616986 None:intergenic 25.0%
! TCCTGTACATATGAATTATT+TGG - chr3.2:87617334-87617353 MS.gene072847:intron 25.0%
! TCTAAGAAAATTTGAAAAGG+AGG + chr3.2:87616767-87616786 None:intergenic 25.0%
! TCTCAATATAGGAATTATAC+GGG - chr3.2:87616730-87616749 MS.gene072847:intron 25.0%
! TTATTACTTCTTTATGCAAG+TGG + chr3.2:87616968-87616987 None:intergenic 25.0%
! TTTCAGATTCAAAACATACT+TGG - chr3.2:87618796-87618815 MS.gene072847:intron 25.0%
!! ACATATGAATTATTTGGGTT+AGG - chr3.2:87617340-87617359 MS.gene072847:intron 25.0%
!! ACTGAAAATAAGTCTAAAGT+AGG - chr3.2:87615914-87615933 MS.gene072847:intron 25.0%
!! ATAACTGGTTTATCAATCAA+AGG - chr3.2:87619288-87619307 MS.gene072847:CDS 25.0%
!! CATATGAATTATTTGGGTTA+GGG - chr3.2:87617341-87617360 MS.gene072847:intron 25.0%
!! TATTTTCTGTTGTATGGTTA+CGG - chr3.2:87616334-87616353 MS.gene072847:intron 25.0%
!! TTGAAATGGATCAGTTATTT+TGG - chr3.2:87615829-87615848 MS.gene072847:intron 25.0%
!!! AACATGTGAACTATTTTGAA+TGG + chr3.2:87619128-87619147 None:intergenic 25.0%
!!! CAATTTCACTTTTGCAAAAA+AGG + chr3.2:87615607-87615626 None:intergenic 25.0%
!!! CTATTACTCATTTTTACAAG+TGG + chr3.2:87617009-87617028 None:intergenic 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG - chr3.2:87615851-87615870 MS.gene072847:intron 25.0%
!!! GTATGTTTTGAATCTGAAAA+AGG + chr3.2:87618795-87618814 None:intergenic 25.0%
!!! TGAAATGGATCAGTTATTTT+GGG - chr3.2:87615830-87615849 MS.gene072847:intron 25.0%
!!! TGCTCTAAGAAAATTTGAAA+AGG + chr3.2:87616770-87616789 None:intergenic 25.0%
!!! TTTCTGCAATAATATTTTGG+CGG - chr3.2:87616187-87616206 MS.gene072847:intron 25.0%
AAAAAAAAGCAAGGACAACT+GGG + chr3.2:87617985-87618004 None:intergenic 30.0%
AAAGGTAAAATACCATGAAG+TGG + chr3.2:87615395-87615414 None:intergenic 30.0%
AAATTTGTGTCTACAGTAAC+TGG + chr3.2:87616297-87616316 None:intergenic 30.0%
AACATGTTATAGATCCAATC+AGG - chr3.2:87619064-87619083 MS.gene072847:CDS 30.0%
AAGTGAAATTGAAACATGCA+CGG - chr3.2:87615616-87615635 MS.gene072847:CDS 30.0%
ACAAGTTAGCTAATCTTTCT+TGG + chr3.2:87617629-87617648 None:intergenic 30.0%
AGTAATAATCAAGCCCTTAA+TGG - chr3.2:87617735-87617754 MS.gene072847:intron 30.0%
AGTGATGTTAATCTGTTTGA+TGG - chr3.2:87618248-87618267 MS.gene072847:intron 30.0%
ATTCAAAGTACATGGTAGTT+TGG + chr3.2:87618044-87618063 None:intergenic 30.0%
ATTCATGACGTATTTGGTAT+AGG + chr3.2:87617414-87617433 None:intergenic 30.0%
CAAAGTAGATCAATTATACC+GGG + chr3.2:87615682-87615701 None:intergenic 30.0%
CAAAGTCCAAACAATTCATA+TGG + chr3.2:87617814-87617833 None:intergenic 30.0%
CAATATAGAGTTCTTACAGT+AGG + chr3.2:87618747-87618766 None:intergenic 30.0%
CATATGAATTGTTTGGACTT+TGG - chr3.2:87617812-87617831 MS.gene072847:CDS 30.0%
CCAAAGTAGATCAATTATAC+CGG + chr3.2:87615683-87615702 None:intergenic 30.0%
CCCAAATAATTCATATGTAC+AGG + chr3.2:87617338-87617357 None:intergenic 30.0%
CTCAATATAGGAATTATACG+GGG - chr3.2:87616731-87616750 MS.gene072847:intron 30.0%
CTTTGACTATCAACCATTAA+GGG + chr3.2:87617277-87617296 None:intergenic 30.0%
GATGGTTCAGATAATAGTAT+GGG - chr3.2:87618278-87618297 MS.gene072847:intron 30.0%
GGGTTATAAAGAGAAAATTG+TGG - chr3.2:87618617-87618636 MS.gene072847:intron 30.0%
TAATTCATATGTACAGGACA+AGG + chr3.2:87617332-87617351 None:intergenic 30.0%
TATACATAAATCCTTGCCAA+TGG - chr3.2:87616224-87616243 MS.gene072847:intron 30.0%
TATTTAAGGAGTCCTTGTTA+GGG - chr3.2:87617182-87617201 MS.gene072847:intron 30.0%
TCAAAAAAACAAGGACAACT+GGG + chr3.2:87617558-87617577 None:intergenic 30.0%
TGTGTTGAAACTTGAAATGA+TGG + chr3.2:87618472-87618491 None:intergenic 30.0%
! ATTAAAGCATGAGTTGAAAC+AGG - chr3.2:87618364-87618383 MS.gene072847:intron 30.0%
! GTTACTGTAGACACAAATTT+TGG - chr3.2:87616297-87616316 MS.gene072847:intron 30.0%
! TGTCAATTAATGGATGGAAA+TGG - chr3.2:87615478-87615497 MS.gene072847:intron 30.0%
! TTAATGGATGGAAATGGATT+TGG - chr3.2:87615484-87615503 MS.gene072847:intron 30.0%
! TTTCTTGGTGGATAATAGTT+TGG + chr3.2:87617614-87617633 None:intergenic 30.0%
!! TTAATGGTTGATAGTCAAAG+AGG - chr3.2:87617277-87617296 MS.gene072847:intron 30.0%
!!! CATACATCACTTTTTCCAAT+TGG - chr3.2:87617671-87617690 MS.gene072847:intron 30.0%
!!! CCTTTTGAGCTTATTTTAAC+CGG - chr3.2:87616021-87616040 MS.gene072847:CDS 30.0%
AAATAAGTGATGTGTCACGT+GGG - chr3.2:87617156-87617175 MS.gene072847:intron 35.0%
AAGCTTTGCGTGTCAATTAA+TGG - chr3.2:87615468-87615487 MS.gene072847:intron 35.0%
AGAAAATGGGTCAGTTATTC+CGG - chr3.2:87615865-87615884 MS.gene072847:intron 35.0%
AGAGTTCTTACAGTAGGATA+AGG + chr3.2:87618741-87618760 None:intergenic 35.0%
AGTTAGCTAATCTTTCTTGG+TGG + chr3.2:87617626-87617645 None:intergenic 35.0%
ATAATAACATGCTACGAGCA+AGG + chr3.2:87617590-87617609 None:intergenic 35.0%
ATAATTACACTCCATTGGCA+AGG + chr3.2:87616238-87616257 None:intergenic 35.0%
ATAGAAGCTGTTCATACAAC+GGG + chr3.2:87615221-87615240 None:intergenic 35.0%
ATTGAGTTCCTGTTAAGGAA+CGG - chr3.2:87616859-87616878 MS.gene072847:intron 35.0%
CAAAAAAAAGCAAGGACAAC+TGG + chr3.2:87617986-87618005 None:intergenic 35.0%
CAAACAATTCATATGGGACA+AGG + chr3.2:87617807-87617826 None:intergenic 35.0%
CAACCTCAGTACTTAAAGAT+TGG - chr3.2:87618694-87618713 MS.gene072847:intron 35.0%
CATGTTAAGATAGGCTCAAA+AGG + chr3.2:87615994-87616013 None:intergenic 35.0%
CCATTCTCTAATACACGTTT+CGG + chr3.2:87618579-87618598 None:intergenic 35.0%
CCGGTATAATTGATCTACTT+TGG - chr3.2:87615680-87615699 MS.gene072847:intron 35.0%
CCGGTTAAAATAAGCTCAAA+AGG + chr3.2:87616054-87616073 None:intergenic 35.0%
CCTTTGACTATCAACCATTA+AGG + chr3.2:87617752-87617771 None:intergenic 35.0%
CGAAACGTGTATTAGAGAAT+GGG - chr3.2:87618577-87618596 MS.gene072847:intron 35.0%
CTATTTAAGGAGTCCTTGTT+AGG - chr3.2:87617181-87617200 MS.gene072847:intron 35.0%
CTTGTCCCATATGAATTGTT+TGG - chr3.2:87617805-87617824 MS.gene072847:CDS 35.0%
GAAAATTGTGGACATAAGAG+AGG - chr3.2:87618629-87618648 MS.gene072847:intron 35.0%
GAAACGCAAAGGTGAAATAA+TGG - chr3.2:87615191-87615210 MS.gene072847:intron 35.0%
GAAAGATTGAGTTCCTGTTA+AGG - chr3.2:87616854-87616873 MS.gene072847:intron 35.0%
GATAATAGTATGGGAGGATT+TGG - chr3.2:87618287-87618306 MS.gene072847:intron 35.0%
GATAGAAGCTGTTCATACAA+CGG + chr3.2:87615222-87615241 None:intergenic 35.0%
GATGTTAATCTGTTTGATGG+AGG - chr3.2:87618251-87618270 MS.gene072847:intron 35.0%
GCTGTTATAGCTATACTGTA+TGG - chr3.2:87617532-87617551 MS.gene072847:intron 35.0%
GGATGGTTCAGATAATAGTA+TGG - chr3.2:87618277-87618296 MS.gene072847:intron 35.0%
GGTCAAGTTCATGTTAAGAT+AGG + chr3.2:87616003-87616022 None:intergenic 35.0%
GGTTTATCAATCAAAGGAAG+AGG - chr3.2:87619294-87619313 MS.gene072847:CDS 35.0%
GTCAAAAAAACAAGGACAAC+TGG + chr3.2:87617559-87617578 None:intergenic 35.0%
TAAATAAGTGATGTGTCACG+TGG - chr3.2:87617155-87617174 MS.gene072847:intron 35.0%
TAATCTGTTTGATGGAGGTT+TGG - chr3.2:87618256-87618275 MS.gene072847:intron 35.0%
TCATTCTCTGTTAGAACAAG+AGG + chr3.2:87618314-87618333 None:intergenic 35.0%
TCTTATGAGTGTATTGCCAT+TGG - chr3.2:87617092-87617111 MS.gene072847:intron 35.0%
TGTACCTGTTAGACTTTGTA+AGG + chr3.2:87616492-87616511 None:intergenic 35.0%
TTAACCGGCATGTTTATGTA+GGG - chr3.2:87616066-87616085 MS.gene072847:CDS 35.0%
TTCAACGCATTAGAAGTTGA+AGG + chr3.2:87619335-87619354 None:intergenic 35.0%
TTGTTCTAACAGAGAATGAG+AGG - chr3.2:87618315-87618334 MS.gene072847:intron 35.0%
TTTAACCGGCATGTTTATGT+AGG - chr3.2:87616065-87616084 MS.gene072847:CDS 35.0%
TTTATCTCCACATGTGTAAC+AGG - chr3.2:87618164-87618183 MS.gene072847:intron 35.0%
TTTATGTATAGAAGCTCGCA+TGG + chr3.2:87616214-87616233 None:intergenic 35.0%
TTTGCGTGTCAATTAATGGA+TGG - chr3.2:87615472-87615491 MS.gene072847:intron 35.0%
! AATTGTTTGGACTTTGGGTT+AGG - chr3.2:87617818-87617837 MS.gene072847:CDS 35.0%
! ATTGTTTGGACTTTGGGTTA+GGG - chr3.2:87617819-87617838 MS.gene072847:CDS 35.0%
! GTATGTTTTCGGTTCAGTAT+AGG - chr3.2:87616670-87616689 MS.gene072847:intron 35.0%
! GTTGTTGTTGTTCTGTGAAA+TGG + chr3.2:87614879-87614898 None:intergenic 35.0%
! TGGAAAATTTTCTCTCTCTC+TGG - chr3.2:87615504-87615523 MS.gene072847:intron 35.0%
! TTTCTTAGAGCATCTCCAAT+GGG - chr3.2:87616778-87616797 MS.gene072847:intron 35.0%
!! CCTTAATGGTTGATAGTCAA+AGG - chr3.2:87617749-87617768 MS.gene072847:intron 35.0%
!! TAATGGTTGATAGTCAAAGG+AGG - chr3.2:87617752-87617771 MS.gene072847:intron 35.0%
!! TTTTCTTAGAGCATCTCCAA+TGG - chr3.2:87616777-87616796 MS.gene072847:intron 35.0%
!!! GGGTTGCTCTTATTTTTGTA+GGG - chr3.2:87618597-87618616 MS.gene072847:intron 35.0%
!!! TGGGTTGCTCTTATTTTTGT+AGG - chr3.2:87618596-87618615 MS.gene072847:intron 35.0%
AACTCCCTACATAAACATGC+CGG + chr3.2:87616073-87616092 None:intergenic 40.0%
AATCTTTCTTCCTCCAATGG+AGG + chr3.2:87616842-87616861 None:intergenic 40.0%
ACAATGGTAGTTCCCTAACA+AGG + chr3.2:87617197-87617216 None:intergenic 40.0%
ACTGAACCGAAAACATACTG+CGG + chr3.2:87616668-87616687 None:intergenic 40.0%
ATAGTTGTCCGTTCCTTAAC+AGG + chr3.2:87616870-87616889 None:intergenic 40.0%
ATCTTTCTTCCTCCAATGGA+GGG + chr3.2:87616841-87616860 None:intergenic 40.0%
ATGTCTTACACGTTCCATGA+GGG + chr3.2:87618342-87618361 None:intergenic 40.0%
CAATTCATATGGGACAAGGA+AGG + chr3.2:87617803-87617822 None:intergenic 40.0%
CAGTCCTTACAAAGTCTAAC+AGG - chr3.2:87616485-87616504 MS.gene072847:intron 40.0%
CCGAAACGTGTATTAGAGAA+TGG - chr3.2:87618576-87618595 MS.gene072847:intron 40.0%
CCTCAGTACTTAAAGATTGG+TGG - chr3.2:87618697-87618716 MS.gene072847:intron 40.0%
CTCAATCTTTCTTCCTCCAA+TGG + chr3.2:87616845-87616864 None:intergenic 40.0%
GAAAATGGGTCAGTTATTCC+GGG - chr3.2:87615866-87615885 MS.gene072847:intron 40.0%
GATATGTGTTTGTGCCTTTC+AGG - chr3.2:87619211-87619230 MS.gene072847:CDS 40.0%
GATCTGTTTCAATTGCAACC+CGG + chr3.2:87619267-87619286 None:intergenic 40.0%
GCTTGATCATAGACAAGCAA+GGG + chr3.2:87618895-87618914 None:intergenic 40.0%
GGAGTCATTGAGTCCTTAAT+TGG - chr3.2:87617113-87617132 MS.gene072847:intron 40.0%
GGTTCAGATAATAGTATGGG+AGG - chr3.2:87618281-87618300 MS.gene072847:intron 40.0%
GTAGATCAATTATACCGGGA+CGG + chr3.2:87615678-87615697 None:intergenic 40.0%
TAAACAACTCGACCACTTCA+TGG - chr3.2:87615380-87615399 MS.gene072847:intron 40.0%
TAAGGACTCAATGACTCCAA+TGG + chr3.2:87617111-87617130 None:intergenic 40.0%
TATCCCAATATGAGACCCTA+TGG + chr3.2:87616696-87616715 None:intergenic 40.0%
TCAAAGAGGAACATGACTAC+AGG - chr3.2:87617291-87617310 MS.gene072847:intron 40.0%
TCAATCAAAGGAAGAGGAAC+TGG - chr3.2:87619300-87619319 MS.gene072847:CDS 40.0%
TCTCTCTCCAGAGTAACTAA+CGG - chr3.2:87616900-87616919 MS.gene072847:intron 40.0%
TGAAACTCCTGTTACACATG+TGG + chr3.2:87618174-87618193 None:intergenic 40.0%
TGATAGTCAAAGGAGGAACA+TGG - chr3.2:87617759-87617778 MS.gene072847:intron 40.0%
TGCTTGATCATAGACAAGCA+AGG + chr3.2:87618896-87618915 None:intergenic 40.0%
TGTCACGTGGGATCTATTTA+AGG - chr3.2:87617168-87617187 MS.gene072847:intron 40.0%
TTGTTAGGGAACTACCATTG+TGG - chr3.2:87617196-87617215 MS.gene072847:intron 40.0%
! AGCATGAGTTGAAACAGGTA+CGG - chr3.2:87618369-87618388 MS.gene072847:intron 40.0%
! CCACCAATCTTTAAGTACTG+AGG + chr3.2:87618700-87618719 None:intergenic 40.0%
! GTTGTTGTTCTGTGAAATGG+TGG + chr3.2:87614876-87614895 None:intergenic 40.0%
! TTAGTTACTCTGGAGAGAGA+GGG + chr3.2:87616900-87616919 None:intergenic 40.0%
! TTCTTAGAGCATCTCCAATG+GGG - chr3.2:87616779-87616798 MS.gene072847:intron 40.0%
!! GAAGTTGGTACTGTTGTTGT+TGG + chr3.2:87615007-87615026 None:intergenic 40.0%
ACGGAGGTAGTAATAGGGAA+AGG + chr3.2:87615659-87615678 None:intergenic 45.0%
AGGCCATAGGGTCTCATATT+GGG - chr3.2:87616690-87616709 MS.gene072847:intron 45.0%
CATGTCTTACACGTTCCATG+AGG + chr3.2:87618343-87618362 None:intergenic 45.0%
CCATGCAATGGAAGCAGTAA+TGG - chr3.2:87616445-87616464 MS.gene072847:intron 45.0%
CCATTACTGCTTCCATTGCA+TGG + chr3.2:87616448-87616467 None:intergenic 45.0%
CTCTCTCCAGAGTAACTAAC+GGG - chr3.2:87616901-87616920 MS.gene072847:intron 45.0%
CTGTTTGATGGAGGTTTGGA+TGG - chr3.2:87618260-87618279 MS.gene072847:intron 45.0%
CTTTCCAAACTGCACCTAAC+TGG - chr3.2:87614926-87614945 MS.gene072847:intron 45.0%
GGAGTGGTCCTTGTTAAGTA+AGG + chr3.2:87616808-87616827 None:intergenic 45.0%
GGTGGCAATCACATTCAAAG+TGG - chr3.2:87618715-87618734 MS.gene072847:intron 45.0%
GTGTAACAGGAGTTTCACCA+GGG - chr3.2:87618177-87618196 MS.gene072847:intron 45.0%
TACTCTGCGTTAGGACAACA+GGG - chr3.2:87615336-87615355 MS.gene072847:intron 45.0%
TAGGCCATAGGGTCTCATAT+TGG - chr3.2:87616689-87616708 MS.gene072847:intron 45.0%
TAGGTGCAGTTTGGAAAGAG+TGG + chr3.2:87614924-87614943 None:intergenic 45.0%
TCGGTTCAGTATAGGCCATA+GGG - chr3.2:87616678-87616697 MS.gene072847:intron 45.0%
TGCCTTATCCTCTTCCTGAA+AGG + chr3.2:87619228-87619247 None:intergenic 45.0%
TGCCTTTCAGGAAGAGGATA+AGG - chr3.2:87619223-87619242 MS.gene072847:CDS 45.0%
TGTAACAGGAGTTTCACCAG+GGG - chr3.2:87618178-87618197 MS.gene072847:intron 45.0%
TGTGTAACAGGAGTTTCACC+AGG - chr3.2:87618176-87618195 MS.gene072847:intron 45.0%
TGTTTGTGCCTTTCAGGAAG+AGG - chr3.2:87619217-87619236 MS.gene072847:CDS 45.0%
TTCAGGAAGAGGATAAGGCA+AGG - chr3.2:87619228-87619247 MS.gene072847:CDS 45.0%
TTCGGTTCAGTATAGGCCAT+AGG - chr3.2:87616677-87616696 MS.gene072847:intron 45.0%
TTGGAAAGAGTGGTGAGGAT+CGG + chr3.2:87614914-87614933 None:intergenic 45.0%
TTTCTCTCTCTCTGGACTCT+GGG - chr3.2:87615512-87615531 MS.gene072847:intron 45.0%
! ACTGTTGTTGTTGGTTGTGG+CGG + chr3.2:87614998-87615017 None:intergenic 45.0%
! ATTTTACGCAAGAGACGAGC+TGG - chr3.2:87618654-87618673 MS.gene072847:intron 45.0%
! GGTACTGTTGTTGTTGGTTG+TGG + chr3.2:87615001-87615020 None:intergenic 45.0%
! GTTAGTTACTCTGGAGAGAG+AGG + chr3.2:87616901-87616920 None:intergenic 45.0%
! GTTCTGTGAAATGGTGGAGT+GGG + chr3.2:87614870-87614889 None:intergenic 45.0%
! TCTTAGAGCATCTCCAATGG+GGG - chr3.2:87616780-87616799 MS.gene072847:intron 45.0%
! TGGAAGCAGTAATGGCTTGT+TGG - chr3.2:87616453-87616472 MS.gene072847:intron 45.0%
! TGTTCTGTGAAATGGTGGAG+TGG + chr3.2:87614871-87614890 None:intergenic 45.0%
! TTGTCCTAACGCAGAGTACT+TGG + chr3.2:87615334-87615353 None:intergenic 45.0%
! TTTTCTCTCTCTCTGGACTC+TGG - chr3.2:87615511-87615530 MS.gene072847:intron 45.0%
!! GCTTGTAAGAGCATCCACAA+TGG + chr3.2:87617213-87617232 None:intergenic 45.0%
!! GGAAGCAGTAATGGCTTGTT+GGG - chr3.2:87616454-87616473 MS.gene072847:intron 45.0%
!! AATAATTTATAATGATATAA+TGG - chr3.2:87617431-87617450 MS.gene072847:intron 5.0%
!! CTTATTAATTAAAATAATTA+AGG - chr3.2:87615947-87615966 MS.gene072847:CDS 5.0%
ACATGTCCGAGTCCATGCAA+TGG - chr3.2:87616433-87616452 MS.gene072847:intron 50.0%
AGACGAGCTGGAAAACTTCC+TGG - chr3.2:87618666-87618685 MS.gene072847:intron 50.0%
AGAGAATGAGAGGTCCCTCA+TGG - chr3.2:87618325-87618344 MS.gene072847:intron 50.0%
ATGGGTCAGTTATTCCGGGA+CGG - chr3.2:87615870-87615889 MS.gene072847:intron 50.0%
CAAAGGAGGAACATGGCTAC+AGG - chr3.2:87617766-87617785 MS.gene072847:intron 50.0%
CATGGACTCGGACATGTTGT+TGG + chr3.2:87616430-87616449 None:intergenic 50.0%
CTCCAATGGAGGGTCCTTAA+CGG + chr3.2:87616831-87616850 None:intergenic 50.0%
CTGCTTCCATTGCATGGACT+CGG + chr3.2:87616442-87616461 None:intergenic 50.0%
GAAGTCATCGACGACGTTAC+CGG - chr3.2:87615102-87615121 MS.gene072847:intron 50.0%
GATCAATTATACCGGGACGG+AGG + chr3.2:87615675-87615694 None:intergenic 50.0%
GCAGTTTGGAAAGAGTGGTG+AGG + chr3.2:87614919-87614938 None:intergenic 50.0%
GGAAGAGGATAAGGCAAGGT+TGG - chr3.2:87619232-87619251 MS.gene072847:CDS 50.0%
GTACTCTGCGTTAGGACAAC+AGG - chr3.2:87615335-87615354 MS.gene072847:intron 50.0%
GTTAAGTAAGGACCCCCCAT+TGG + chr3.2:87616796-87616815 None:intergenic 50.0%
GTTGCCAAGTACTCTGCGTT+AGG - chr3.2:87615327-87615346 MS.gene072847:intron 50.0%
TCCAATGGAGGGTCCTTAAC+GGG + chr3.2:87616830-87616849 None:intergenic 50.0%
TGAAACAGGTACGGTCCTCA+TGG - chr3.2:87618378-87618397 MS.gene072847:intron 50.0%
TGACTTCGCTGTGGTTTCGA+TGG + chr3.2:87615089-87615108 None:intergenic 50.0%
TGAGCCAGTTAGGTGCAGTT+TGG + chr3.2:87614933-87614952 None:intergenic 50.0%
TGGCAGAAAGCGAAACGCAA+AGG - chr3.2:87615180-87615199 MS.gene072847:intron 50.0%
TGGGGGGTCCTTACTTAACA+AGG - chr3.2:87616797-87616816 MS.gene072847:intron 50.0%
! AGTACTGAGGTTGTGTCACC+AGG + chr3.2:87618687-87618706 None:intergenic 50.0%
! CTGCTGCCGCAGTATGTTTT+CGG - chr3.2:87616659-87616678 MS.gene072847:intron 50.0%
! CTTAGAGCATCTCCAATGGG+GGG - chr3.2:87616781-87616800 MS.gene072847:intron 50.0%
!! AATGGTGGAGTGGGTTGTCT+TGG + chr3.2:87614861-87614880 None:intergenic 50.0%
!! CAAGGTTGGTGCAAGAAACC+GGG - chr3.2:87619246-87619265 MS.gene072847:CDS 50.0%
!! GCAAGGTTGGTGCAAGAAAC+CGG - chr3.2:87619245-87619264 MS.gene072847:CDS 50.0%
ACAAGGACCACTCCCCGTTA+AGG - chr3.2:87616814-87616833 MS.gene072847:intron 55.0%
ACAGGAGTTTCACCAGGGGA+AGG - chr3.2:87618182-87618201 MS.gene072847:intron 55.0%
ACCGGGACGGAGGTAGTAAT+AGG + chr3.2:87615665-87615684 None:intergenic 55.0%
AGAGCCATTGACCGGAGGAT+TGG + chr3.2:87615053-87615072 None:intergenic 55.0%
ATCCTGGGCAACTGGTCAAC+CGG + chr3.2:87615276-87615295 None:intergenic 55.0%
ATGCGACTGCGACATCAACG+AGG + chr3.2:87616372-87616391 None:intergenic 55.0%
CCAATGGAGGGTCCTTAACG+GGG + chr3.2:87616829-87616848 None:intergenic 55.0%
CCCTATTACTACCTCCGTCC+CGG - chr3.2:87615661-87615680 MS.gene072847:CDS 55.0%
CCGGGACGGAGGTAGTAATA+GGG + chr3.2:87615664-87615683 None:intergenic 55.0%
CGTTAAGGACCCTCCATTGG+AGG - chr3.2:87616829-87616848 MS.gene072847:intron 55.0%
CGTTGAAGAGCAAGCGCAAG+AGG - chr3.2:87619348-87619367 MS.gene072847:CDS 55.0%
CTGTGGTTTCGATGGAGGAC+AGG + chr3.2:87615081-87615100 None:intergenic 55.0%
CTTCGCTGTGGTTTCGATGG+AGG + chr3.2:87615086-87615105 None:intergenic 55.0%
GAAAGAGTGGTGAGGATCGG+AGG + chr3.2:87614911-87614930 None:intergenic 55.0%
GAGCCATTGACCGGAGGATT+GGG + chr3.2:87615052-87615071 None:intergenic 55.0%
GGTATGAAGGCCGAGGAAAG+CGG - chr3.2:87615129-87615148 MS.gene072847:intron 55.0%
GGTTTCGATGGAGGACAGGA+CGG + chr3.2:87615077-87615096 None:intergenic 55.0%
GTCAGTTATTCCGGGACGGA+GGG - chr3.2:87615874-87615893 MS.gene072847:intron 55.0%
GTGGGACCCGTTAGTTACTC+TGG + chr3.2:87616910-87616929 None:intergenic 55.0%
GTGTTTGAGAATCGCCACGC+CGG - chr3.2:87615254-87615273 MS.gene072847:intron 55.0%
GTTCCCAATCCTCCGGTCAA+TGG - chr3.2:87615046-87615065 MS.gene072847:CDS 55.0%
GTTTCGATGGAGGACAGGAC+GGG + chr3.2:87615076-87615095 None:intergenic 55.0%
TGTTGCCTCACCGCTTTCCT+CGG + chr3.2:87615142-87615161 None:intergenic 55.0%
TTGACCGGAGGATTGGGAAC+CGG + chr3.2:87615046-87615065 None:intergenic 55.0%
! GGTGTCGAGGTTGAGGAAGT+TGG + chr3.2:87615022-87615041 None:intergenic 55.0%
! GGTGTCGAGGTTGCGAAGAA+GGG + chr3.2:87614962-87614981 None:intergenic 55.0%
! GTTGTTGTTGGTTGTGGCGG+TGG + chr3.2:87614995-87615014 None:intergenic 55.0%
! GTTTCACCAGGGGAAGGTAC+AGG - chr3.2:87618188-87618207 MS.gene072847:intron 55.0%
! TGGTGTCGAGGTTGCGAAGA+AGG + chr3.2:87614963-87614982 None:intergenic 55.0%
!! AGGGCGTTGTTGAGCCAGTT+AGG + chr3.2:87614943-87614962 None:intergenic 55.0%
AGGACGGGAGAGCCATTGAC+CGG + chr3.2:87615061-87615080 None:intergenic 60.0%
CAGCGGAGGGAGTGATGAAC+TGG - chr3.2:87615160-87615179 MS.gene072847:intron 60.0%
CCCCGTTAAGGACCCTCCAT+TGG - chr3.2:87616826-87616845 MS.gene072847:intron 60.0%
CGTCGTCGATGACTTCGCTG+TGG + chr3.2:87615098-87615117 None:intergenic 60.0%
CTCTCTCTCTGGACTCTGGG+TGG - chr3.2:87615515-87615534 MS.gene072847:intron 60.0%
GAGTGGTGAGGATCGGAGGT+TGG + chr3.2:87614907-87614926 None:intergenic 60.0%
GCATAGTACTCCCTCCGTCC+CGG + chr3.2:87615887-87615906 None:intergenic 60.0%
GGAAAGCGGTGAGGCAACAG+CGG - chr3.2:87615143-87615162 MS.gene072847:intron 60.0%
GGTCAGTTATTCCGGGACGG+AGG - chr3.2:87615873-87615892 MS.gene072847:intron 60.0%
GTTGCTCCTGTACCTTCCCC+TGG + chr3.2:87618197-87618216 None:intergenic 60.0%
TTCCTCAACCTCGACACCGC+CGG - chr3.2:87615024-87615043 MS.gene072847:CDS 60.0%
!! CGTTACCGGCGCTGGTATGA+AGG - chr3.2:87615116-87615135 MS.gene072847:intron 60.0%
!! TGGCGTTGACGTTGGTGTCG+AGG + chr3.2:87614975-87614994 None:intergenic 60.0%
AAGCGGTGAGGCAACAGCGG+AGG - chr3.2:87615146-87615165 MS.gene072847:intron 65.0%
ACCGGAGGATTGGGAACCGG+CGG + chr3.2:87615043-87615062 None:intergenic 65.0%
ACGGGAGAGCCATTGACCGG+AGG + chr3.2:87615058-87615077 None:intergenic 65.0%
AGCGGTGAGGCAACAGCGGA+GGG - chr3.2:87615147-87615166 MS.gene072847:intron 65.0%
ATCGACGACGTTACCGGCGC+TGG - chr3.2:87615108-87615127 MS.gene072847:intron 65.0%
CTCGGCCTTCATACCAGCGC+CGG + chr3.2:87615124-87615143 None:intergenic 65.0%
GAAGGCCGAGGAAAGCGGTG+AGG - chr3.2:87615134-87615153 MS.gene072847:intron 65.0%
GGAGGGTCCTTAACGGGGAG+TGG + chr3.2:87616824-87616843 None:intergenic 65.0%
! AACCGGCGGTGTCGAGGTTG+AGG + chr3.2:87615029-87615048 None:intergenic 65.0%
! ATTGGGAACCGGCGGTGTCG+AGG + chr3.2:87615035-87615054 None:intergenic 65.0%
!! ACCGCCGGTTCCCAATCCTC+CGG - chr3.2:87615039-87615058 MS.gene072847:CDS 65.0%
!! GAGCGTCGATCCTGGGCAAC+TGG + chr3.2:87615284-87615303 None:intergenic 65.0%
!! GCCAGCTGAGCGTCGATCCT+GGG + chr3.2:87615291-87615310 None:intergenic 65.0%
!! TGCCAGCTGAGCGTCGATCC+TGG + chr3.2:87615292-87615311 None:intergenic 65.0%
!! TGTGGCGGTGGCGTTGACGT+TGG + chr3.2:87614983-87615002 None:intergenic 65.0%
GCCCAGGATCGACGCTCAGC+TGG - chr3.2:87615287-87615306 MS.gene072847:intron 70.0%
GGGCAACTGGTCAACCGGCG+TGG + chr3.2:87615271-87615290 None:intergenic 70.0%
! CGCCGGTTGACCAGTTGCCC+AGG - chr3.2:87615271-87615290 MS.gene072847:intron 70.0%
!! CGGCGCTGGTATGAAGGCCG+AGG - chr3.2:87615122-87615141 MS.gene072847:intron 70.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 87614844 87619462 87614844 ID=MS.gene072847
chr3.2 mRNA 87614844 87619462 87614844 ID=MS.gene072847.t1;Parent=MS.gene072847
chr3.2 exon 87618905 87619462 87618905 ID=MS.gene072847.t1.exon1;Parent=MS.gene072847.t1
chr3.2 CDS 87618905 87619462 87618905 ID=cds.MS.gene072847.t1;Parent=MS.gene072847.t1
chr3.2 exon 87617800 87617920 87617800 ID=MS.gene072847.t1.exon2;Parent=MS.gene072847.t1
chr3.2 CDS 87617800 87617920 87617800 ID=cds.MS.gene072847.t1;Parent=MS.gene072847.t1
chr3.2 exon 87615921 87616120 87615921 ID=MS.gene072847.t1.exon3;Parent=MS.gene072847.t1
chr3.2 CDS 87615921 87616120 87615921 ID=cds.MS.gene072847.t1;Parent=MS.gene072847.t1
chr3.2 exon 87615557 87615688 87615557 ID=MS.gene072847.t1.exon4;Parent=MS.gene072847.t1
chr3.2 CDS 87615557 87615688 87615557 ID=cds.MS.gene072847.t1;Parent=MS.gene072847.t1
chr3.2 exon 87614937 87615073 87614937 ID=MS.gene072847.t1.exon5;Parent=MS.gene072847.t1
chr3.2 CDS 87614937 87615073 87614937 ID=cds.MS.gene072847.t1;Parent=MS.gene072847.t1
chr3.2 exon 87614844 87614847 87614844 ID=MS.gene072847.t1.exon6;Parent=MS.gene072847.t1
chr3.2 CDS 87614844 87614847 87614844 ID=cds.MS.gene072847.t1;Parent=MS.gene072847.t1
Gene Sequence

>MS.gene072847

ATGGCGTATCACAACCAAGACAACCCACTCCACCATTTCACAGAACAACAACAACAACAACCAACCTCCGATCCTCACCACTCTTTCCAAACTGCACCTAACTGGCTCAACAACGCCCTTCTTCGCAACCTCGACACCAACGTCAACGCCACCGCCACAACCAACAACAACAGTACCAACTTCCTCAACCTCGACACCGCCGGTTCCCAATCCTCCGGTCAATGGCTCTCCCGTCCTGTCCTCCATCGAAACCACAGCGAAGTCATCGACGACGTTACCGGCGCTGGTATGAAGGCCGAGGAAAGCGGTGAGGCAACAGCGGAGGGAGTGATGAACTGGCAGAAAGCGAAACGCAAAGGTGAAATAATGGCGCACCCGTTGTATGAACAGCTTCTATCAGCACACGTGTCGTGTTTGAGAATCGCCACGCCGGTTGACCAGTTGCCCAGGATCGACGCTCAGCTGGCAGAGTCACAGAATGTTGTTGCCAAGTACTCTGCGTTAGGACAACAGGGCATGCTTGATAACGATGATAATAAACAACTCGACCACTTCATGGTATTTTACCTTTCTCAATAATATTTACAAAAAATTGTGATTTTTTTTGTTTTATTTTATTTTTAAAAGCTTTGCGTGTCAATTAATGGATGGAAATGGATTTGGAAAATTTTCTCTCTCTCTGGACTCTGGGTGGTATTGACATGCTTTCTCTTTCTATGCAAAACTTAAATTTTAACTCGGCTTTGAATGAATCTAGTGTCCTTTTTTGCAAAAGTGAAATTGAAACATGCACGGTTGCTTCTTTTTTTCTTCCTTTCCCTATTACTACCTCCGTCCCGGTATAATTGATCTACTTTGGTTTTTCACACAGATTAAGAAAAGTGTATAAATAAATAGGAAAGTGGAATATATTGTATTGGGAATGATAAAAGTAGTATTATTTAGTGTTATATTGTATTGGGAATGATGAAAGTTGTATTGAAAATTGAAATGGATCAGTTATTTTGGGACACTTTTTTTTAGAAAATGGGTCAGTTATTCCGGGACGGAGGGAGTACTATGCATGAATGACTGAAAATAAGTCTAAAGTAGGATGATGATTACTTATTAATTAAAATAATTAAGGTAGCTAATGGTTCAATTTTGACCTTTTGAGCCTATCTTAACATGAACTTGACCTTTTGAGCTTATTTTAACATAAATTTGACCTTTTGAGCTTATTTTAACCGGCATGTTTATGTAGGGAGTTTGTCTTTTATTTGATTTCTACTTTCTTCTTCTTTTAATTACAATATTTTTTTGTATGGTGGCATCTTTTTAGTTTTGATTCTTGTTATAGTAATTTTCTGCAATAATATTTTGGCGGTCCATGCGAGCTTCTATACATAAATCCTTGCCAATGGAGTGTAATTATGTTTTATTTTTTATTTTTTTGTCGTGGAATATGATTCCAGTTACTGTAGACACAAATTTTGGTCAGTGCTATAATTTATTTTCTGTTGTATGGTTACGGTTTTGAAATTTTCCTCGTTGATGTCGCAGTCGCATTATGTTTTGTTGCTTTGTTCGTTCAAAGAACAGCTCCAACAACATGTCCGAGTCCATGCAATGGAAGCAGTAATGGCTTGTTGGGAGATCGAACAGTCCTTACAAAGTCTAACAGGTACAGTAATATAATATATTCTTTGTCTGTTGATTGTTACATCTTAACTTAATAAATAAAAGTTATGCATGATAAAATAGAAATGTAATTTTTCCAAATTTTTGTTGCTTATTCCTAAAGATAAATTACACGAATGAAGTTTTTATTATGTGCTGCTGCCGCAGTATGTTTTCGGTTCAGTATAGGCCATAGGGTCTCATATTGGGATAGTTATTTATACTTTTCTCAATATAGGAATTATACGGGGTAACTTGTAACCTCCTTTTCAAATTTTCTTAGAGCATCTCCAATGGGGGGTCCTTACTTAACAAGGACCACTCCCCGTTAAGGACCCTCCATTGGAGGAAGAAAGATTGAGTTCCTGTTAAGGAACGGACAACTATATAAGAACCCTCTCTCTCCAGAGTAACTAACGGGTCCCACGTTTAAAAAAGTAATAAAATGTGTACTACTTGGTCCCACTTGCATAAAGAAGTAATAAAATGTGTACTACTTGGTCCCACTTGTAAAAATGAGTAATAGATAAATTATTTTTGTTTAATATGTAAAGATAGTGGGACATATTTAAATACTTTTCATTGGAGTTCTTATGAGTGTATTGCCATTGGAGTCATTGAGTCCTTAATTGGTACTTTTATTAAAAAATTATAAATAAGTGATGTGTCACGTGGGATCTATTTAAGGAGTCCTTGTTAGGGAACTACCATTGTGGATGCTCTTACAAGCTCAATATTCAATGTTCAGCGTAGCAATAAATGATAATTAAGATCTTAATGGTTGATAGTCAAAGAGGAACATGACTACAGGAATTAAAAGTTTCTTCCTTGTCCTGTACATATGAATTATTTGGGTTAGGGAAACTTCAAATCATCTTTGTTAACTTTATTAACATTCAAATATCAATCCTATACCAAATACGTCATGAATAATTTATAATGATATAATGGTCAAAATTTCTGTTTTCTAAATTTATTGAAATGAAGAATGAAGACTTTAGTAAAATAAATAAATAAAAATGTATTGAAGCTGTTATAGCTATACTGTATGGCCCAGTTGTCCTTGTTTTTTTGACAGAATTGTCCTTGCTCGTAGCATGTTATTATGCCAAACTATTATCCACCAAGAAAGATTAGCTAACTTGTTGTTCATACTAAACAGCAAAAGCATACATCACTTTTTCCAATTGGATATTAATCAATATGCAAAGTTCAGTGTAACAAGAAATAGTAGTAATAATCAAGCCCTTAATGGTTGATAGTCAAAGGAGGAACATGGCTACAGGAATTAAAAGTTCCTTCCTTGTCCCATATGAATTGTTTGGACTTTGGGTTAGGGAAACTTCAAATCTTTGTTAACTTTAATTAACATTAAAACATTGACCTTAAACCACATAATGAATAATTTATTAGTAAGATAGAATGGTCATAATTTCTGTGTTCTAAATGTATTGAAAACATCATAGTTATACTGTATGGCCCAGTTGTCCTTGCTTTTTTTTGACAGAATTGTCCTTACTTTTTAGCATGTTATTTTGCCAAACTACCATGTACTTTGAATATAGATACTTTTGTTAGATTAGCTAACTTGTTGCGCATAATAAACAGCAAAAGCACACAGCACTTTTTCCCATTAGATATGAGTACTAATTAAAGTGATGTTTATCTCCACATGTGTAACAGGAGTTTCACCAGGGGAAGGTACAGGAGCAACAATGTCTGAAGATGAAGATGAGCAAGTAGACAGTGATGTTAATCTGTTTGATGGAGGTTTGGATGGTTCAGATAATAGTATGGGAGGATTTGGTCCTCTTGTTCTAACAGAGAATGAGAGGTCCCTCATGGAACGTGTAAGACATGAATTAAAGCATGAGTTGAAACAGGTACGGTCCTCATGGATTACATTAAATGTTGAATAGGAAAGGTAGTAAATTAACTACAGATTTTAATATACTACTCTTCATTACCATCATTTCAAGTTTCAACACATTTTTCACTGTCTAGTGAAACTCATATATGATTCACTTTCACATGATTTAATGTAAGCTAATAGTAATATAAATTAAGTATATTCCGAAACGTGTATTAGAGAATGGGTTGCTCTTATTTTTGTAGGGTTATAAAGAGAAAATTGTGGACATAAGAGAGGAAATTTTACGCAAGAGACGAGCTGGAAAACTTCCTGGTGACACAACCTCAGTACTTAAAGATTGGTGGCAATCACATTCAAAGTGGCCTTATCCTACTGTAAGAACTCTATATTGACTTTTACTAAAAAAATTATGAAATCCTTTTTCAGATTCAAAACATACTTGGTCATTTTAGTTTGCTAAACATTGATATTTTTTCGAACAATTTTGAATGAATTTAATGAATAGCAACATAGATGCCCTTGCTTGTCTATGATCAAGCATAGTGCACGTCATGTTTGAATAAACGACTTAATTGTGTGTTTATAGTATACATTTTTATTATATATAAGTACAATTATATGTTTTCATCTAAGTGATAAGTTGTTTTCATAAGCTATCTTAGATATCTTACGGAAATAAGTTGAAAAAAACATGTTATAGATCCAATCAGGTTCTCAAATATTTATGACAGAAGATAAACTCAAATAAACCATTCAAAATAGTTCACATGTTAGCGCGTACTTGTTGTCTCACAAGTCATAACCCACTAATCATTATTATTTTTAGTTCATCTTTGATATGTGTTTGTGCCTTTCAGGAAGAGGATAAGGCAAGGTTGGTGCAAGAAACCGGGTTGCAATTGAAACAGATCAATAACTGGTTTATCAATCAAAGGAAGAGGAACTGGCACAGCAATCCTTCAACTTCTAATGCGTTGAAGAGCAAGCGCAAGAGGTATTTCTATATTAAAAAAATAGTCCTTTTCATAATCTTAAATTTGCATGAACTCTGCACCGATCTTGAATTAGAAATAAGTAATGCAGGTGA

Protein sequence

>MS.gene072847.t1

MAYHNQDNPLHHFTEQQQQQPTSDPHHSFQTAPNWLNNALLRNLDTNVNATATTNNNSTNFLNLDTAGSQSSGQWLSRPVLHRNHSEVIDDVTGAGMKAEESGEATAEGVMNWQKAKRKGEIMAHPLYEQLLSAHVSCLRIATPVDQLPRIDAQLAESQNVVAKYSALGQQGMLDNDDNKQLDHFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSEDEDEQVDSDVNLFDGGLDGSDNSMGGFGPLVLTENERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKDWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSNALKSKRKR