AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene073262

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene073262.t1 MTR_0040s0140 96.875 256 8 0 1 256 1 256 0.0 521
MS.gene073262.t1 MTR_2g090255 79.365 252 51 1 6 256 1 252 1.13e-158 441
MS.gene073262.t1 MTR_5g076950 60.177 226 89 1 31 256 40 264 4.10e-98 288
MS.gene073262.t1 MTR_5g079950 51.304 230 112 0 27 256 28 257 5.24e-88 262
MS.gene073262.t1 MTR_7g061720 50.435 230 114 0 27 256 27 256 1.41e-87 261
MS.gene073262.t1 MTR_5g075320 48.996 249 125 1 8 256 5 251 6.02e-87 259
MS.gene073262.t1 MTR_2g097030 50.435 230 114 0 27 256 29 258 1.59e-86 258
MS.gene073262.t1 MTR_3g094060 50.000 246 121 1 11 256 10 253 4.84e-86 256
MS.gene073262.t1 MTR_3g064510 55.932 236 91 6 31 256 52 284 7.34e-86 257
MS.gene073262.t1 MTR_5g041700 50.000 244 120 1 13 256 6 247 2.06e-85 255
MS.gene073262.t1 MTR_3g435430 52.632 228 106 1 29 256 22 247 3.37e-85 254
MS.gene073262.t1 MTR_3g094040 52.889 225 104 1 32 256 31 253 5.05e-85 254
MS.gene073262.t1 MTR_4g081950 50.410 244 119 1 13 256 42 283 1.93e-84 254
MS.gene073262.t1 MTR_7g013140 49.794 243 117 2 12 254 11 248 2.71e-84 252
MS.gene073262.t1 MTR_3g466790 53.778 225 102 1 32 256 32 254 7.63e-84 251
MS.gene073262.t1 MTR_4g063975 48.438 256 124 2 9 256 1 256 1.01e-83 251
MS.gene073262.t1 MTR_3g466760 53.333 225 103 1 32 256 38 260 5.25e-83 249
MS.gene073262.t1 MTR_7g013150 48.347 242 120 2 13 254 14 250 1.06e-80 243
MS.gene073262.t1 MTR_7g011060 48.387 248 113 3 14 256 3 240 6.03e-80 241
MS.gene073262.t1 MTR_8g058990 50.667 225 109 1 29 253 27 249 5.37e-79 239
MS.gene073262.t1 MTR_8g464350 46.939 245 128 1 8 252 7 249 2.48e-77 234
MS.gene073262.t1 MTR_7g013120 51.316 228 108 2 29 255 26 251 2.77e-77 234
MS.gene073262.t1 MTR_4g124340 50.667 225 108 2 32 255 61 283 7.31e-77 234
MS.gene073262.t1 MTR_1g085460 49.356 233 114 3 25 254 23 254 4.59e-76 231
MS.gene073262.t1 MTR_7g111010 46.559 247 124 4 13 252 4 249 7.38e-75 228
MS.gene073262.t1 MTR_7g110990 49.554 224 109 3 32 252 12 234 2.58e-74 226
MS.gene073262.t1 MTR_6g012520 48.606 251 114 3 11 256 2 242 7.20e-73 223
MS.gene073262.t1 MTR_1g026020 42.188 256 140 5 3 254 1 252 3.01e-70 216
MS.gene073262.t1 MTR_5g011210 41.532 248 143 2 8 254 13 259 2.18e-67 209
MS.gene073262.t1 MTR_4g102450 43.983 241 133 2 13 252 17 256 3.44e-67 209
MS.gene073262.t1 MTR_0008s0120 51.852 108 52 0 146 253 88 195 4.48e-34 122
MS.gene073262.t1 MTR_0008s0120 39.326 89 54 0 1 89 1 89 8.59e-14 68.6
MS.gene073262.t1 MTR_6g012500 54.000 100 46 0 157 256 181 280 1.80e-33 122
MS.gene073262.t1 MTR_2g090270 31.429 245 140 9 23 254 26 255 1.07e-29 112
MS.gene073262.t1 MTR_2g090265 30.962 239 137 10 29 254 30 253 9.29e-28 107
MS.gene073262.t1 MTR_0122s0020 32.353 238 135 9 29 254 38 261 1.13e-27 107
MS.gene073262.t1 MTR_4g028640 31.933 238 131 10 29 252 39 259 9.04e-25 99.8
MS.gene073262.t1 MTR_0118s0070 29.130 230 135 11 37 251 53 269 7.40e-19 84.0
MS.gene073262.t1 MTR_0809s0010 29.600 250 142 13 18 252 35 265 2.27e-17 79.7
MS.gene073262.t1 MTR_0122s0020 32.597 181 97 8 29 198 38 204 3.23e-16 75.5
MS.gene073262.t1 MTR_5g013440 28.194 227 146 9 35 254 32 248 1.48e-13 68.9
MS.gene073262.t1 MTR_1g085365 51.786 56 27 0 201 256 4 59 2.82e-12 60.8
MS.gene073262.t1 MTR_4g075790 26.106 226 132 10 43 252 32 238 3.91e-12 64.7
MS.gene073262.t1 MTR_4g099370 25.664 226 151 8 34 252 30 245 3.94e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene073262.t1 AT4G38210 65.306 245 81 2 14 256 12 254 2.52e-119 341
MS.gene073262.t1 AT3G03220 57.522 226 95 1 31 256 39 263 1.57e-93 276
MS.gene073262.t1 AT2G39700 48.413 252 130 0 5 256 4 255 1.03e-89 266
MS.gene073262.t1 AT3G55500 50.602 249 119 1 12 256 10 258 2.42e-89 265
MS.gene073262.t1 AT5G02260 47.600 250 126 1 12 256 7 256 3.01e-88 262
MS.gene073262.t1 AT2G37640 49.402 251 119 1 14 256 10 260 5.54e-88 262
MS.gene073262.t1 AT5G05290 51.271 236 112 2 22 256 22 255 1.06e-85 256
MS.gene073262.t1 AT2G03090 49.609 256 125 3 1 256 1 252 2.97e-85 254
MS.gene073262.t1 AT2G40610 50.201 249 121 3 9 256 7 253 2.44e-84 252
MS.gene073262.t1 AT1G69530 50.202 247 119 2 12 256 5 249 5.28e-84 251
MS.gene073262.t1 AT1G69530 50.202 247 119 2 12 256 5 249 5.28e-84 251
MS.gene073262.t1 AT5G56320 48.560 243 123 1 14 256 11 251 6.15e-84 251
MS.gene073262.t1 AT5G56320 48.560 243 123 1 14 256 11 251 6.15e-84 251
MS.gene073262.t1 AT2G37640 53.810 210 97 0 47 256 26 235 8.08e-84 250
MS.gene073262.t1 AT5G56320 48.560 243 123 1 14 256 11 251 2.63e-83 251
MS.gene073262.t1 AT1G69530 50.413 242 116 2 12 251 5 244 3.67e-82 248
MS.gene073262.t1 AT2G28950 46.667 255 135 1 3 256 1 255 1.65e-81 245
MS.gene073262.t1 AT5G39280 51.327 226 106 2 29 254 51 272 8.65e-79 239
MS.gene073262.t1 AT5G39300 50.442 226 108 2 29 254 52 273 9.47e-78 236
MS.gene073262.t1 AT5G39270 50.885 226 107 2 29 254 55 276 5.27e-77 234
MS.gene073262.t1 AT5G39290 50.442 226 108 2 29 254 55 276 2.87e-76 233
MS.gene073262.t1 AT1G26770 48.207 251 127 2 6 256 1 248 4.89e-76 231
MS.gene073262.t1 AT1G26770 48.016 252 128 2 5 256 10 258 5.52e-76 231
MS.gene073262.t1 AT3G29030 46.768 263 118 5 6 256 1 253 1.25e-75 230
MS.gene073262.t1 AT1G62980 43.621 243 135 2 13 254 12 253 9.63e-74 226
MS.gene073262.t1 AT5G39260 43.922 255 128 4 6 254 14 259 3.26e-70 217
MS.gene073262.t1 AT4G01630 46.875 224 115 3 32 252 28 250 4.72e-70 216
MS.gene073262.t1 AT5G39310 48.661 224 110 3 32 254 90 309 1.39e-69 217
MS.gene073262.t1 AT1G20190 43.966 232 125 3 24 252 18 247 2.85e-69 214
MS.gene073262.t1 AT1G69530 44.130 247 104 3 12 256 5 219 1.57e-68 211
MS.gene073262.t1 AT1G69530 49.510 204 99 2 12 213 5 206 2.54e-67 209
MS.gene073262.t1 AT1G12560 43.443 244 133 4 12 252 15 256 4.20e-67 209
MS.gene073262.t1 AT3G15370 44.358 257 131 6 6 256 1 251 3.83e-66 206
MS.gene073262.t1 AT3G15370 40.767 287 128 8 6 256 1 281 2.19e-61 195
MS.gene073262.t1 AT1G20190 46.032 189 97 3 67 252 2 188 5.62e-59 186
MS.gene073262.t1 AT4G28250 32.365 241 132 11 29 254 33 257 2.80e-24 98.2
MS.gene073262.t1 AT2G20750 32.669 251 141 11 18 254 28 264 1.54e-23 96.7
MS.gene073262.t1 AT1G65680 29.839 248 143 9 22 252 35 268 2.08e-23 96.3
MS.gene073262.t1 AT4G28250 32.083 240 128 11 29 254 33 251 2.83e-22 92.8
MS.gene073262.t1 AT2G45110 30.172 232 135 11 35 252 36 254 7.84e-18 80.9
MS.gene073262.t1 AT1G65681 28.636 220 132 9 45 252 11 217 3.10e-17 78.6
MS.gene073262.t1 AT3G60570 25.483 259 159 10 15 254 11 254 1.22e-14 72.0
MS.gene073262.t1 AT2G20750 32.804 189 103 8 18 195 28 203 2.98e-14 70.1
MS.gene073262.t1 AT3G60570 25.792 221 136 9 47 254 1 206 2.53e-11 62.0
MS.gene073262.t1 AT4G17030 25.969 258 151 11 13 252 9 244 2.61e-11 62.4

Find 63 sgRNAs with CRISPR-Local

Find 93 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTTCTGTCCTCCTAATTT+TGG 0.175976 4.3:-55512182 MS.gene073262:CDS
CAAGAAAAGTACCTGTAATT+AGG 0.187865 4.3:+55512563 None:intergenic
GCACCTCCAAACTGGCAATT+TGG 0.255098 4.3:-55511384 MS.gene073262:CDS
TAGGGATCCTTCTGTGTCTT+TGG 0.259292 4.3:+55512582 None:intergenic
TTTGGTCTCTCAGTTGATTA+TGG 0.289936 4.3:-55512164 MS.gene073262:CDS
GGATACCAATGGCAAGGAAT+TGG 0.318465 4.3:-55511503 MS.gene073262:CDS
GTTTGTCCAAATTGCCAGTT+TGG 0.334344 4.3:+55511378 None:intergenic
CTAAATGCTGTTATCTAAGA+TGG 0.344241 4.3:-55512704 None:intergenic
TCAACTGAGAGACCAAAATT+AGG 0.348503 4.3:+55512170 None:intergenic
GATACCAATGGCAAGGAATT+GGG 0.350848 4.3:-55511502 MS.gene073262:CDS
ACATCAGCCTTTGTCCTTTG+AGG 0.354377 4.3:-55511448 MS.gene073262:CDS
GACAACTCAAAATGTTCTCT+TGG 0.372662 4.3:+55512125 None:intergenic
GCAGAAGGAGCTTGTGGTTA+TGG 0.372980 4.3:-55512362 MS.gene073262:intron
AAGAAAAGTACCTGTAATTA+GGG 0.377560 4.3:+55512564 None:intergenic
TTATTCCCGTTCAATATAGA+AGG 0.389617 4.3:-55512061 MS.gene073262:intron
CAATTTGGACAAACATTTGA+AGG 0.398107 4.3:-55511369 MS.gene073262:CDS
TTGCTTACAAAGATCAAGAA+TGG 0.419745 4.3:-55512627 MS.gene073262:CDS
CAAGGAATTGGGGAATGAAT+TGG 0.429950 4.3:-55511491 MS.gene073262:CDS
ATCTACCTTCTATATTGAAC+GGG 0.431748 4.3:+55512056 None:intergenic
CAAGCATACACCACAAGATA+TGG 0.436575 4.3:+55512234 None:intergenic
ATAACTAATGTGGGGTTAGA+TGG 0.442300 4.3:-55511567 MS.gene073262:CDS
ACAATGTAGCACCTCCAAAC+TGG 0.451802 4.3:-55511392 MS.gene073262:CDS
ACAGAAGGATCCCTAATTAC+AGG 0.458393 4.3:-55512574 MS.gene073262:intron
ATTCCCCAATTCCTTGCCAT+TGG 0.501334 4.3:+55511498 None:intergenic
AAAGTGAAGGGATCTAGAAC+AGG 0.502893 4.3:-55511528 MS.gene073262:CDS
TGCATTTGCTGAAATTGCTA+AGG 0.506123 4.3:-55512096 MS.gene073262:CDS
TCTCAGTTGATTATGGTGGT+TGG 0.506701 4.3:-55512157 MS.gene073262:CDS
CAAGTTCTGATAACTAATGT+GGG 0.508543 4.3:-55511576 MS.gene073262:CDS
TCAAGTTCTGATAACTAATG+TGG 0.509065 4.3:-55511577 MS.gene073262:CDS
TAAATGCTGTTATCTAAGAT+GGG 0.517060 4.3:-55512703 MS.gene073262:CDS
AGGACAAAGGCTGATGTTGA+AGG 0.517191 4.3:+55511454 None:intergenic
GATCTTCACAAAGCTAGCTA+TGG 0.521811 4.3:-55512338 MS.gene073262:CDS
CATATCTTGTGGTGTATGCT+TGG 0.525681 4.3:-55512233 MS.gene073262:CDS
GTCTTTGGCATAAGTTGCAG+TGG 0.528308 4.3:+55512597 None:intergenic
TATCTACCTTCTATATTGAA+CGG 0.536318 4.3:+55512055 None:intergenic
TGTCCAAATTGCCAGTTTGG+AGG 0.539604 4.3:+55511381 None:intergenic
GTGAAGTGTGAAAGAAGTGG+AGG 0.540916 4.3:-55511636 MS.gene073262:CDS
GCATTTGCTGAAATTGCTAA+GGG 0.541056 4.3:-55512095 MS.gene073262:CDS
TTTGAGGTAACTAGCAGCAC+TGG 0.546125 4.3:-55511432 MS.gene073262:CDS
TTCAACAGAGGGAGTACATG+TGG 0.560849 4.3:-55512284 MS.gene073262:CDS
AGCTATGGAAAACATAGTGT+TGG 0.560850 4.3:-55512323 MS.gene073262:CDS
AGTAGAGAAGTGTGGACTGA+AGG 0.569353 4.3:+55512677 None:intergenic
GGGTTGAAATTCACAATGAG+TGG 0.572612 4.3:-55511615 MS.gene073262:CDS
GGTCTCTCAGTTGATTATGG+TGG 0.580447 4.3:-55512161 MS.gene073262:CDS
ATACCAATGGCAAGGAATTG+GGG 0.587228 4.3:-55511501 MS.gene073262:CDS
TCAACAGAGGGAGTACATGT+GGG 0.614475 4.3:-55512283 MS.gene073262:CDS
TAAAATCAAGTAGAGAAGTG+TGG 0.616273 4.3:+55512669 None:intergenic
TGAAGTGTGAAAGAAGTGGA+GGG 0.622177 4.3:-55511635 MS.gene073262:CDS
TGAAGGGATCTAGAACAGGA+TGG 0.625878 4.3:-55511524 MS.gene073262:CDS
ACTGAGAGACCAAAATTAGG+AGG 0.626412 4.3:+55512173 None:intergenic
CAGGATGGATACCAATGGCA+AGG 0.630186 4.3:-55511509 MS.gene073262:CDS
CTAGTTACCTCAAAGGACAA+AGG 0.637645 4.3:+55511441 None:intergenic
GTGGCAGTAACAATAACAGA+AGG 0.647537 4.3:+55512206 None:intergenic
TAGAACAGGATGGATACCAA+TGG 0.662207 4.3:-55511514 MS.gene073262:CDS
CAACAGAGGGAGTACATGTG+GGG 0.668401 4.3:-55512282 MS.gene073262:CDS
ACTTATGCCAAAGACACAGA+AGG 0.668875 4.3:-55512589 MS.gene073262:CDS
AGTGCTGCTAGTTACCTCAA+AGG 0.674064 4.3:+55511434 None:intergenic
CATTTGCTGAAATTGCTAAG+GGG 0.677827 4.3:-55512094 MS.gene073262:CDS
AAGTTCTGATAACTAATGTG+GGG 0.688292 4.3:-55511575 MS.gene073262:CDS
ATTAGGAGGACAGAAATCAG+TGG 0.688419 4.3:+55512187 None:intergenic
TGTGATGCAGAAGGAGCTTG+TGG 0.691735 4.3:-55512368 MS.gene073262:intron
AGAGTGAAGTGTGAAAGAAG+TGG 0.695816 4.3:-55511639 MS.gene073262:CDS
GATGTGTTGACCATATCTTG+TGG 0.783191 4.3:-55512244 MS.gene073262:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTATAAGTGTTTTT+GGG - chr4.3:55512025-55512044 MS.gene073262:intron 10.0%
!! AACTTAATTAATCTCTTATT+TGG - chr4.3:55512064-55512083 MS.gene073262:CDS 15.0%
!!! AATCATGTACATTTTTTTTT+TGG + chr4.3:55511658-55511677 None:intergenic 15.0%
!!! GATTTTTTTATAAGTGTTTT+TGG - chr4.3:55512024-55512043 MS.gene073262:intron 15.0%
!! AAATGAAACTAAAAAACACA+AGG + chr4.3:55512216-55512235 None:intergenic 20.0%
!! ATAACATAGCTAATAAAAAG+AGG + chr4.3:55512298-55512317 None:intergenic 20.0%
!! GTTTATATAAAAACAGTTCA+AGG + chr4.3:55512149-55512168 None:intergenic 20.0%
!!! ACTGTTTTTATATAAACGTT+TGG - chr4.3:55512152-55512171 MS.gene073262:CDS 20.0%
!!! TGTGTTTTTTAGTTTCATTT+TGG - chr4.3:55512216-55512235 MS.gene073262:CDS 20.0%
! AAAAAGAGGCAAAAAAGATT+AGG + chr4.3:55512284-55512303 None:intergenic 25.0%
! GCACAAACAAAACAAAAATT+TGG + chr4.3:55512386-55512405 None:intergenic 25.0%
! TATCTACCTTCTATATTGAA+CGG + chr4.3:55512004-55512023 None:intergenic 25.0%
!!! AAGAAAAGTACCTGTAATTA+GGG + chr4.3:55511495-55511514 None:intergenic 25.0%
!!! CATGTACATTTTTTTTTTGG+TGG + chr4.3:55511655-55511674 None:intergenic 25.0%
ATCTACCTTCTATATTGAAC+GGG + chr4.3:55512003-55512022 None:intergenic 30.0%
CAATTTGGACAAACATTTGA+AGG - chr4.3:55512687-55512706 MS.gene073262:CDS 30.0%
TAAAATCAAGTAGAGAAGTG+TGG + chr4.3:55511390-55511409 None:intergenic 30.0%
TTATTCCCGTTCAATATAGA+AGG - chr4.3:55511995-55512014 MS.gene073262:intron 30.0%
TTGCTTACAAAGATCAAGAA+TGG - chr4.3:55511429-55511448 MS.gene073262:CDS 30.0%
! AAGTTCTGATAACTAATGTG+GGG - chr4.3:55512481-55512500 MS.gene073262:intron 30.0%
! CAAGTTCTGATAACTAATGT+GGG - chr4.3:55512480-55512499 MS.gene073262:intron 30.0%
! TCAAGTTCTGATAACTAATG+TGG - chr4.3:55512479-55512498 MS.gene073262:intron 30.0%
!! CAAGAAAAGTACCTGTAATT+AGG + chr4.3:55511496-55511515 None:intergenic 30.0%
!!! AAGTGTTTTTGGGATGTTTT+TGG - chr4.3:55512035-55512054 MS.gene073262:intron 30.0%
!!! ATTTTTTTTTTGGTGGTGGT+CGG + chr4.3:55511648-55511667 None:intergenic 30.0%
!!! GTACATTTTTTTTTTGGTGG+TGG + chr4.3:55511652-55511671 None:intergenic 30.0%
AGCTATGGAAAACATAGTGT+TGG - chr4.3:55511733-55511752 MS.gene073262:intron 35.0%
ATAACTAATGTGGGGTTAGA+TGG - chr4.3:55512489-55512508 MS.gene073262:intron 35.0%
GACAACTCAAAATGTTCTCT+TGG + chr4.3:55511934-55511953 None:intergenic 35.0%
GCATAATATATGCAAGATCC+AGG - chr4.3:55511613-55511632 MS.gene073262:CDS 35.0%
TCAACTGAGAGACCAAAATT+AGG + chr4.3:55511889-55511908 None:intergenic 35.0%
TTTGGTCTCTCAGTTGATTA+TGG - chr4.3:55511892-55511911 MS.gene073262:intron 35.0%
! AGCACAATTTTGTTCAACAG+AGG - chr4.3:55511760-55511779 MS.gene073262:intron 35.0%
! ATGTTGCTGTTATGAACCAA+AGG + chr4.3:55511524-55511543 None:intergenic 35.0%
! CATTTGCTGAAATTGCTAAG+GGG - chr4.3:55511962-55511981 MS.gene073262:intron 35.0%
! GATTTCTGTCCTCCTAATTT+TGG - chr4.3:55511874-55511893 MS.gene073262:intron 35.0%
! GCACAATTTTGTTCAACAGA+GGG - chr4.3:55511761-55511780 MS.gene073262:intron 35.0%
! GCATTTGCTGAAATTGCTAA+GGG - chr4.3:55511961-55511980 MS.gene073262:intron 35.0%
! GTTTGGCTCAATTACACATT+TGG - chr4.3:55512169-55512188 MS.gene073262:CDS 35.0%
! TGCATTTGCTGAAATTGCTA+AGG - chr4.3:55511960-55511979 MS.gene073262:intron 35.0%
!! AGTTTTTGCTGTGAAAGTGA+AGG - chr4.3:55512515-55512534 MS.gene073262:intron 35.0%
!! GTTTTTGCTGTGAAAGTGAA+GGG - chr4.3:55512516-55512535 MS.gene073262:intron 35.0%
!!! AGAACATTTTGAGTTGTCAC+TGG - chr4.3:55511936-55511955 MS.gene073262:intron 35.0%
!!! TTTTTTTTTTGGTGGTGGTC+GGG + chr4.3:55511647-55511666 None:intergenic 35.0%
ACAGAAGGATCCCTAATTAC+AGG - chr4.3:55511482-55511501 MS.gene073262:CDS 40.0%
ACTGAGAGACCAAAATTAGG+AGG + chr4.3:55511886-55511905 None:intergenic 40.0%
ACTTATGCCAAAGACACAGA+AGG - chr4.3:55511467-55511486 MS.gene073262:CDS 40.0%
AGAGTGAAGTGTGAAAGAAG+TGG - chr4.3:55512417-55512436 MS.gene073262:intron 40.0%
ATACCAATGGCAAGGAATTG+GGG - chr4.3:55512555-55512574 MS.gene073262:intron 40.0%
ATTAGGAGGACAGAAATCAG+TGG + chr4.3:55511872-55511891 None:intergenic 40.0%
CAAGCATACACCACAAGATA+TGG + chr4.3:55511825-55511844 None:intergenic 40.0%
CAAGGAATTGGGGAATGAAT+TGG - chr4.3:55512565-55512584 MS.gene073262:intron 40.0%
CATATCTTGTGGTGTATGCT+TGG - chr4.3:55511823-55511842 MS.gene073262:intron 40.0%
CTAGTTACCTCAAAGGACAA+AGG + chr4.3:55512618-55512637 None:intergenic 40.0%
GATACCAATGGCAAGGAATT+GGG - chr4.3:55512554-55512573 MS.gene073262:intron 40.0%
GATCTTCACAAAGCTAGCTA+TGG - chr4.3:55511718-55511737 MS.gene073262:intron 40.0%
GGGTTGAAATTCACAATGAG+TGG - chr4.3:55512441-55512460 MS.gene073262:intron 40.0%
GTGGCAGTAACAATAACAGA+AGG + chr4.3:55511853-55511872 None:intergenic 40.0%
GTTTGTCCAAATTGCCAGTT+TGG + chr4.3:55512681-55512700 None:intergenic 40.0%
TAGAACAGGATGGATACCAA+TGG - chr4.3:55512542-55512561 MS.gene073262:intron 40.0%
TCTCAGTTGATTATGGTGGT+TGG - chr4.3:55511899-55511918 MS.gene073262:intron 40.0%
TGAAGTGTGAAAGAAGTGGA+GGG - chr4.3:55512421-55512440 MS.gene073262:intron 40.0%
! AAAGTGAAGGGATCTAGAAC+AGG - chr4.3:55512528-55512547 MS.gene073262:intron 40.0%
! GATGTGTTGACCATATCTTG+TGG - chr4.3:55511812-55511831 MS.gene073262:intron 40.0%
! TACTTTTCTTGCTCCTCCTT+TGG - chr4.3:55511505-55511524 MS.gene073262:CDS 40.0%
! TTGCTGTTATGAACCAAAGG+AGG + chr4.3:55511521-55511540 None:intergenic 40.0%
!!! TTTTTTTTTGGTGGTGGTCG+GGG + chr4.3:55511646-55511665 None:intergenic 40.0%
ACAATGTAGCACCTCCAAAC+TGG - chr4.3:55512664-55512683 MS.gene073262:CDS 45.0%
ACATCAGCCTTTGTCCTTTG+AGG - chr4.3:55512608-55512627 MS.gene073262:CDS 45.0%
AGGACAAAGGCTGATGTTGA+AGG + chr4.3:55512605-55512624 None:intergenic 45.0%
ATTCCCCAATTCCTTGCCAT+TGG + chr4.3:55512561-55512580 None:intergenic 45.0%
GGATACCAATGGCAAGGAAT+TGG - chr4.3:55512553-55512572 MS.gene073262:intron 45.0%
GGTCTCTCAGTTGATTATGG+TGG - chr4.3:55511895-55511914 MS.gene073262:intron 45.0%
GTCTTTGGCATAAGTTGCAG+TGG + chr4.3:55511462-55511481 None:intergenic 45.0%
GTGAAGTGTGAAAGAAGTGG+AGG - chr4.3:55512420-55512439 MS.gene073262:intron 45.0%
TAGGGATCCTTCTGTGTCTT+TGG + chr4.3:55511477-55511496 None:intergenic 45.0%
TGTCCAAATTGCCAGTTTGG+AGG + chr4.3:55512678-55512697 None:intergenic 45.0%
TTGTGTGCATGTGATGCAGA+AGG - chr4.3:55511679-55511698 MS.gene073262:intron 45.0%
! AGTAGAGAAGTGTGGACTGA+AGG + chr4.3:55511382-55511401 None:intergenic 45.0%
! AGTGCTGCTAGTTACCTCAA+AGG + chr4.3:55512625-55512644 None:intergenic 45.0%
! TCAACAGAGGGAGTACATGT+GGG - chr4.3:55511773-55511792 MS.gene073262:intron 45.0%
! TGAAGGGATCTAGAACAGGA+TGG - chr4.3:55512532-55512551 MS.gene073262:intron 45.0%
! TGAGCTTAGCTCAGTTGGTA+TGG - chr4.3:55511585-55511604 MS.gene073262:CDS 45.0%
! TTCAACAGAGGGAGTACATG+TGG - chr4.3:55511772-55511791 MS.gene073262:intron 45.0%
! TTTGAGGTAACTAGCAGCAC+TGG - chr4.3:55512624-55512643 MS.gene073262:CDS 45.0%
CAGGATGGATACCAATGGCA+AGG - chr4.3:55512547-55512566 MS.gene073262:intron 50.0%
GCACCTCCAAACTGGCAATT+TGG - chr4.3:55512672-55512691 MS.gene073262:CDS 50.0%
GCAGAAGGAGCTTGTGGTTA+TGG - chr4.3:55511694-55511713 MS.gene073262:intron 50.0%
TGTGATGCAGAAGGAGCTTG+TGG - chr4.3:55511688-55511707 MS.gene073262:intron 50.0%
! CAACAGAGGGAGTACATGTG+GGG - chr4.3:55511774-55511793 MS.gene073262:intron 50.0%
CCAACTGAGCTAAGCTCACG+AGG + chr4.3:55511583-55511602 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG - chr4.3:55511580-55511599 MS.gene073262:CDS 55.0%
GGTGGTCGGGGTTTGAATCC+TGG + chr4.3:55511634-55511653 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 55511356 55512722 55511356 ID=MS.gene073262
chr4.3 mRNA 55511356 55512722 55511356 ID=MS.gene073262.t1;Parent=MS.gene073262
chr4.3 exon 55512575 55512722 55512575 ID=MS.gene073262.t1.exon1;Parent=MS.gene073262.t1
chr4.3 CDS 55512575 55512722 55512575 ID=cds.MS.gene073262.t1;Parent=MS.gene073262.t1
chr4.3 exon 55512062 55512380 55512062 ID=MS.gene073262.t1.exon2;Parent=MS.gene073262.t1
chr4.3 CDS 55512062 55512380 55512062 ID=cds.MS.gene073262.t1;Parent=MS.gene073262.t1
chr4.3 exon 55511356 55511659 55511356 ID=MS.gene073262.t1.exon3;Parent=MS.gene073262.t1
chr4.3 CDS 55511356 55511659 55511356 ID=cds.MS.gene073262.t1;Parent=MS.gene073262.t1
Gene Sequence

>MS.gene073262

ATGCTGTTATCTAAGATGGGTGTCCTTCAGTCCACACTTCTCTACTTGATTTTATTACATTCATTCAACATTGTTGCTTACAAAGATCAAGAATGGAAGAAAGCCACTGCAACTTATGCCAAAGACACAGAAGGATCCCTAATTACAGGTACTTTTCTTGCTCCTCCTTTGGTTCATAACAGCAACATTAATAGTCTTGTTTTGTCAAATGTACATGATTTTGTCCTCGTGAGCTTAGCTCAGTTGGTATGGACAATGCATAATATATGCAAGATCCAGGATTCAAACCCCGACCACCACCAAAAAAAAAATGTACATGATTTTTGTGTGCATGTGATGCAGAAGGAGCTTGTGGTTATGGAGATCTTCACAAAGCTAGCTATGGAAAACATAGTGTTGGATTAAGCACAATTTTGTTCAACAGAGGGAGTACATGTGGGGCTTGCTATGAAATCAGATGTGTTGACCATATCTTGTGGTGTATGCTTGGAAGTCCTTCTGTTATTGTTACTGCCACTGATTTCTGTCCTCCTAATTTTGGTCTCTCAGTTGATTATGGTGGTTGGTGTAACTTTCCAAGAGAACATTTTGAGTTGTCACTGGCTGCATTTGCTGAAATTGCTAAGGGGAAAGCTGATATTATTCCCGTTCAATATAGAAGGTAGATAGATTTTTTTATAAGTGTTTTTGGGATGTTTTTGGATAAACAACTTAATTAATCTCTTATTTGGTTAATGATGTTTATATAAGCGCTTATGTATAAACAATTTTTATAATCATAGAATACTGTCCTTGAACTGTTTTTATATAAACGTTTGGCTCAATTACACATTTGGTTTTTAACTTTCATTTTAGTTCCTTGTGTTTTTTAGTTTCATTTTGGTTGTAATTTAAGAGACTAATCTTAAATTGTAATTTAATTTATCCTAATCTTTTTTGCCTCTTTTTATTAGCTATGTTATAGAGCTTATTAAAATAAGTCAGAAAATAATTTATAAACATGTTATAAGTTTTCTTATAAACTCTTCCAAATTTTTGTTTTGTTTGTGCAAATGTGATGCAGAGTGAAGTGTGAAAGAAGTGGAGGGTTGAAATTCACAATGAGTGGAAGTTCTCATTTCTATCAAGTTCTGATAACTAATGTGGGGTTAGATGGTGAAGTTTTTGCTGTGAAAGTGAAGGGATCTAGAACAGGATGGATACCAATGGCAAGGAATTGGGGAATGAATTGGCATTGCAATGTCAACCTTCAACATCAGCCTTTGTCCTTTGAGGTAACTAGCAGCACTGGAAAAACACTCACATCTTACAATGTAGCACCTCCAAACTGGCAATTTGGACAAACATTTGAAGGAAAACAATTTTAG
Protein sequence

>MS.gene073262.t1

MLLSKMGVLQSTLLYLILLHSFNIVAYKDQEWKKATATYAKDTEGSLITEGACGYGDLHKASYGKHSVGLSTILFNRGSTCGACYEIRCVDHILWCMLGSPSVIVTATDFCPPNFGLSVDYGGWCNFPREHFELSLAAFAEIAKGKADIIPVQYRRVKCERSGGLKFTMSGSSHFYQVLITNVGLDGEVFAVKVKGSRTGWIPMARNWGMNWHCNVNLQHQPLSFEVTSSTGKTLTSYNVAPPNWQFGQTFEGKQF