Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07983.t1 | XP_013451955.1 | 98.2 | 651 | 12 | 0 | 15 | 665 | 60 | 710 | 0.00E+00 | 1229.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07983.t1 | Q94BU1 | 69.5 | 652 | 188 | 4 | 15 | 665 | 51 | 692 | 1.0e-255 | 884.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07983.t1 | A0A072UA79 | 98.2 | 651 | 12 | 0 | 15 | 665 | 60 | 710 | 0.0e+00 | 1229.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049427 | MS.gene07983 | 0.802805 | 4.71E-49 | -1.69E-46 |
MS.gene050426 | MS.gene07983 | -0.810048 | 1.40E-50 | -1.69E-46 |
MS.gene050670 | MS.gene07983 | 0.820821 | 5.60E-53 | -1.69E-46 |
MS.gene050812 | MS.gene07983 | 0.800731 | 1.26E-48 | -1.69E-46 |
MS.gene05105 | MS.gene07983 | 0.809634 | 1.72E-50 | -1.69E-46 |
MS.gene051525 | MS.gene07983 | 0.804819 | 1.80E-49 | -1.69E-46 |
MS.gene051582 | MS.gene07983 | 0.818568 | 1.83E-52 | -1.69E-46 |
MS.gene052011 | MS.gene07983 | -0.805468 | 1.32E-49 | -1.69E-46 |
MS.gene052253 | MS.gene07983 | 0.810247 | 1.27E-50 | -1.69E-46 |
MS.gene052322 | MS.gene07983 | 0.805025 | 1.63E-49 | -1.69E-46 |
MS.gene052414 | MS.gene07983 | 0.819947 | 8.89E-53 | -1.69E-46 |
MS.gene052481 | MS.gene07983 | 0.821589 | 3.73E-53 | -1.69E-46 |
MS.gene052485 | MS.gene07983 | 0.809429 | 1.90E-50 | -1.69E-46 |
MS.gene052501 | MS.gene07983 | 0.80743 | 5.07E-50 | -1.69E-46 |
MS.gene052505 | MS.gene07983 | 0.820747 | 5.82E-53 | -1.69E-46 |
MS.gene052982 | MS.gene07983 | 0.832536 | 8.94E-56 | -1.69E-46 |
MS.gene054102 | MS.gene07983 | 0.814309 | 1.65E-51 | -1.69E-46 |
MS.gene054107 | MS.gene07983 | 0.818894 | 1.54E-52 | -1.69E-46 |
MS.gene054110 | MS.gene07983 | 0.800511 | 1.39E-48 | -1.69E-46 |
MS.gene05413 | MS.gene07983 | 0.806773 | 6.99E-50 | -1.69E-46 |
MS.gene054183 | MS.gene07983 | 0.803938 | 2.75E-49 | -1.69E-46 |
MS.gene054719 | MS.gene07983 | 0.802242 | 6.16E-49 | -1.69E-46 |
MS.gene055116 | MS.gene07983 | 0.819615 | 1.06E-52 | -1.69E-46 |
MS.gene055369 | MS.gene07983 | 0.854285 | 1.36E-61 | -1.69E-46 |
MS.gene055539 | MS.gene07983 | 0.804402 | 2.20E-49 | -1.69E-46 |
MS.gene05553 | MS.gene07983 | 0.820897 | 5.38E-53 | -1.69E-46 |
MS.gene055741 | MS.gene07983 | 0.811781 | 5.90E-51 | -1.69E-46 |
MS.gene055744 | MS.gene07983 | 0.817255 | 3.63E-52 | -1.69E-46 |
MS.gene056514 | MS.gene07983 | 0.856511 | 3.06E-62 | -1.69E-46 |
MS.gene056723 | MS.gene07983 | 0.829662 | 4.54E-55 | -1.69E-46 |
MS.gene056877 | MS.gene07983 | 0.805428 | 1.34E-49 | -1.69E-46 |
MS.gene05702 | MS.gene07983 | 0.805825 | 1.11E-49 | -1.69E-46 |
MS.gene057124 | MS.gene07983 | 0.844935 | 5.56E-59 | -1.69E-46 |
MS.gene057396 | MS.gene07983 | 0.804745 | 1.86E-49 | -1.69E-46 |
MS.gene057749 | MS.gene07983 | 0.800507 | 1.40E-48 | -1.69E-46 |
MS.gene057825 | MS.gene07983 | 0.811327 | 7.40E-51 | -1.69E-46 |
MS.gene058233 | MS.gene07983 | 0.813566 | 2.40E-51 | -1.69E-46 |
MS.gene059011 | MS.gene07983 | 0.817614 | 3.01E-52 | -1.69E-46 |
MS.gene059141 | MS.gene07983 | 0.812066 | 5.11E-51 | -1.69E-46 |
MS.gene059420 | MS.gene07983 | 0.83446 | 2.96E-56 | -1.69E-46 |
MS.gene059688 | MS.gene07983 | 0.802536 | 5.35E-49 | -1.69E-46 |
MS.gene060403 | MS.gene07983 | 0.808984 | 2.37E-50 | -1.69E-46 |
MS.gene060971 | MS.gene07983 | 0.858014 | 1.10E-62 | -1.69E-46 |
MS.gene061154 | MS.gene07983 | 0.8162 | 6.25E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07983.t1 | MTR_6g038750 | 98.157 | 651 | 12 | 0 | 15 | 665 | 60 | 710 | 0.0 | 1297 |
MS.gene07983.t1 | MTR_4g026450 | 41.429 | 560 | 295 | 9 | 33 | 571 | 101 | 648 | 2.42e-141 | 429 |
MS.gene07983.t1 | MTR_0053s0030 | 41.091 | 550 | 295 | 7 | 33 | 565 | 89 | 626 | 1.73e-134 | 411 |
MS.gene07983.t1 | MTR_1g046620 | 36.711 | 681 | 354 | 14 | 33 | 665 | 133 | 784 | 1.65e-133 | 411 |
MS.gene07983.t1 | MTR_1g009860 | 36.531 | 490 | 281 | 5 | 23 | 484 | 54 | 541 | 1.59e-104 | 331 |
MS.gene07983.t1 | MTR_1g009860 | 36.531 | 490 | 281 | 5 | 23 | 484 | 54 | 541 | 5.77e-104 | 330 |
MS.gene07983.t1 | MTR_3g105760 | 37.882 | 491 | 264 | 8 | 79 | 537 | 123 | 604 | 8.84e-101 | 323 |
MS.gene07983.t1 | MTR_1g095480 | 34.082 | 490 | 283 | 8 | 16 | 469 | 121 | 606 | 8.12e-83 | 273 |
MS.gene07983.t1 | MTR_1g095480 | 33.861 | 505 | 293 | 9 | 16 | 483 | 121 | 621 | 2.35e-80 | 272 |
MS.gene07983.t1 | MTR_3g082750 | 35.638 | 376 | 229 | 4 | 84 | 447 | 201 | 575 | 5.27e-68 | 236 |
MS.gene07983.t1 | MTR_8g091710 | 33.580 | 405 | 226 | 6 | 84 | 447 | 195 | 597 | 5.16e-67 | 234 |
MS.gene07983.t1 | MTR_3g094740 | 33.487 | 433 | 241 | 10 | 60 | 447 | 176 | 606 | 3.18e-66 | 231 |
MS.gene07983.t1 | MTR_3g094740 | 33.487 | 433 | 241 | 10 | 60 | 447 | 176 | 606 | 5.81e-66 | 231 |
MS.gene07983.t1 | MTR_4g104070 | 28.186 | 408 | 257 | 11 | 77 | 457 | 61 | 459 | 1.44e-37 | 146 |
MS.gene07983.t1 | MTR_1g008980 | 30.795 | 302 | 184 | 8 | 84 | 364 | 51 | 348 | 1.10e-35 | 144 |
MS.gene07983.t1 | MTR_0224s0030 | 34.653 | 202 | 130 | 2 | 284 | 483 | 36 | 237 | 5.15e-35 | 134 |
MS.gene07983.t1 | MTR_5g068050 | 29.114 | 316 | 201 | 5 | 87 | 384 | 128 | 438 | 1.06e-34 | 139 |
MS.gene07983.t1 | MTR_5g077080 | 31.046 | 306 | 188 | 7 | 64 | 351 | 60 | 360 | 4.17e-29 | 122 |
MS.gene07983.t1 | MTR_8g464860 | 27.577 | 388 | 250 | 6 | 87 | 443 | 210 | 597 | 7.15e-29 | 122 |
MS.gene07983.t1 | MTR_4g091510 | 26.562 | 384 | 253 | 6 | 87 | 441 | 221 | 604 | 9.38e-24 | 106 |
MS.gene07983.t1 | MTR_4g091510 | 26.562 | 384 | 253 | 6 | 87 | 441 | 216 | 599 | 9.99e-24 | 106 |
MS.gene07983.t1 | MTR_2g011640 | 27.273 | 385 | 246 | 8 | 87 | 441 | 269 | 649 | 5.43e-23 | 104 |
MS.gene07983.t1 | MTR_3g070410 | 28.125 | 256 | 167 | 8 | 74 | 314 | 76 | 329 | 1.06e-20 | 97.1 |
MS.gene07983.t1 | MTR_1g085610 | 26.882 | 372 | 243 | 12 | 84 | 433 | 227 | 591 | 1.41e-17 | 87.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07983.t1 | AT1G71810 | 69.479 | 652 | 188 | 4 | 15 | 665 | 51 | 692 | 0.0 | 926 |
MS.gene07983.t1 | AT1G79600 | 42.146 | 522 | 280 | 6 | 33 | 544 | 96 | 605 | 2.03e-136 | 416 |
MS.gene07983.t1 | AT3G24190 | 37.730 | 599 | 324 | 9 | 33 | 582 | 141 | 739 | 8.60e-132 | 407 |
MS.gene07983.t1 | AT4G31390 | 40.625 | 448 | 248 | 5 | 53 | 484 | 132 | 577 | 7.64e-107 | 339 |
MS.gene07983.t1 | AT5G24970 | 40.161 | 498 | 250 | 9 | 83 | 537 | 136 | 628 | 3.51e-106 | 338 |
MS.gene07983.t1 | AT5G24970 | 40.161 | 498 | 250 | 9 | 83 | 537 | 175 | 667 | 1.18e-105 | 338 |
MS.gene07983.t1 | AT5G24970 | 40.200 | 500 | 244 | 11 | 83 | 537 | 136 | 625 | 4.75e-103 | 330 |
MS.gene07983.t1 | AT4G31390 | 39.732 | 448 | 227 | 7 | 53 | 484 | 132 | 552 | 1.19e-100 | 322 |
MS.gene07983.t1 | AT4G31390 | 41.842 | 380 | 207 | 4 | 117 | 484 | 1 | 378 | 2.49e-95 | 302 |
MS.gene07983.t1 | AT2G39190 | 31.412 | 503 | 309 | 8 | 16 | 486 | 128 | 626 | 9.45e-73 | 251 |
MS.gene07983.t1 | AT5G64940 | 33.659 | 410 | 227 | 6 | 81 | 447 | 216 | 623 | 3.31e-65 | 229 |
MS.gene07983.t1 | AT5G64940 | 33.659 | 410 | 227 | 6 | 81 | 447 | 216 | 623 | 3.31e-65 | 229 |
MS.gene07983.t1 | AT3G07700 | 35.027 | 374 | 232 | 4 | 84 | 447 | 190 | 562 | 7.55e-65 | 227 |
MS.gene07983.t1 | AT3G07700 | 35.027 | 374 | 232 | 4 | 84 | 447 | 190 | 562 | 7.55e-65 | 227 |
MS.gene07983.t1 | AT3G07700 | 35.027 | 374 | 232 | 4 | 84 | 447 | 190 | 562 | 7.55e-65 | 227 |
MS.gene07983.t1 | AT3G07700 | 33.333 | 405 | 226 | 5 | 84 | 447 | 190 | 591 | 2.04e-62 | 221 |
MS.gene07983.t1 | AT5G05200 | 27.302 | 315 | 208 | 5 | 87 | 384 | 129 | 439 | 1.92e-34 | 138 |
MS.gene07983.t1 | AT4G24810 | 25.000 | 448 | 283 | 11 | 71 | 488 | 5 | 429 | 1.39e-32 | 131 |
MS.gene07983.t1 | AT4G24810 | 25.000 | 448 | 283 | 11 | 71 | 488 | 5 | 429 | 1.39e-32 | 131 |
MS.gene07983.t1 | AT4G24810 | 25.383 | 457 | 289 | 11 | 62 | 488 | 38 | 472 | 2.44e-32 | 131 |
MS.gene07983.t1 | AT5G24810 | 29.321 | 324 | 201 | 8 | 62 | 364 | 79 | 395 | 3.91e-32 | 134 |
MS.gene07983.t1 | AT4G24810 | 28.896 | 308 | 192 | 6 | 71 | 353 | 5 | 310 | 5.73e-32 | 127 |
MS.gene07983.t1 | AT4G24810 | 29.831 | 295 | 180 | 6 | 71 | 340 | 5 | 297 | 1.06e-31 | 125 |
MS.gene07983.t1 | AT5G50330 | 26.471 | 408 | 262 | 12 | 62 | 438 | 38 | 438 | 1.59e-31 | 129 |
MS.gene07983.t1 | AT2G39190 | 36.170 | 235 | 140 | 5 | 16 | 244 | 128 | 358 | 8.14e-31 | 125 |
MS.gene07983.t1 | AT1G65950 | 30.526 | 285 | 179 | 6 | 70 | 340 | 85 | 364 | 8.14e-31 | 126 |
MS.gene07983.t1 | AT1G65950 | 29.967 | 307 | 193 | 7 | 70 | 359 | 85 | 386 | 2.16e-30 | 126 |
MS.gene07983.t1 | AT4G24810 | 24.670 | 454 | 284 | 11 | 71 | 488 | 5 | 436 | 3.57e-30 | 124 |
MS.gene07983.t1 | AT1G11390 | 26.718 | 393 | 252 | 7 | 87 | 443 | 208 | 600 | 1.23e-27 | 119 |
MS.gene07983.t1 | AT5G24810 | 27.042 | 355 | 200 | 10 | 62 | 364 | 79 | 426 | 2.45e-27 | 119 |
MS.gene07983.t1 | AT1G61640 | 27.296 | 392 | 251 | 8 | 81 | 441 | 207 | 595 | 6.12e-27 | 116 |
MS.gene07983.t1 | AT5G50330 | 25.245 | 408 | 251 | 13 | 62 | 438 | 38 | 422 | 7.21e-26 | 112 |
MS.gene07983.t1 | AT1G61640 | 27.177 | 379 | 242 | 8 | 81 | 428 | 207 | 582 | 1.82e-24 | 108 |
MS.gene07983.t1 | AT2G40090 | 28.758 | 306 | 190 | 9 | 84 | 363 | 89 | 392 | 5.72e-21 | 97.4 |
MS.gene07983.t1 | AT4G01660 | 25.352 | 355 | 239 | 10 | 79 | 414 | 220 | 567 | 4.73e-17 | 85.5 |
MS.gene07983.t1 | AT1G61640 | 29.858 | 211 | 140 | 3 | 81 | 283 | 207 | 417 | 2.51e-15 | 79.7 |
Find 155 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTAGGTATAAATTCAAATTT+AGG | 0.192597 | 6.3:-32217894 | MS.gene07983:intron |
CTCCTTTGGAAACAGCATTT+TGG | 0.207891 | 6.3:+32218708 | None:intergenic |
ATATCTTCTTCGGTCATTAA+AGG | 0.212242 | 6.3:+32216516 | None:intergenic |
TACTAAGGTCTTATCTGTTT+TGG | 0.221799 | 6.3:+32216952 | None:intergenic |
CCCTCAGCTTAGATCTTCTT+TGG | 0.222220 | 6.3:-32217662 | MS.gene07983:CDS |
TTTGGAGAATCTTCTTTATA+AGG | 0.244527 | 6.3:-32217644 | MS.gene07983:intron |
GATGGCAAATTAGCTTATTT+AGG | 0.253896 | 6.3:-32219731 | MS.gene07983:intron |
CGCCTTATGCTATTACTATC+AGG | 0.254646 | 6.3:-32216471 | MS.gene07983:CDS |
TATCAGCTTTGGAGACCTTC+TGG | 0.264928 | 6.3:-32218678 | MS.gene07983:CDS |
TTGAGTACAGTATTTGATTC+TGG | 0.286370 | 6.3:+32215923 | None:intergenic |
AAAATTGAATACTGATCTTC+AGG | 0.330649 | 6.3:-32222992 | MS.gene07983:intron |
CCTGTTGCTGCTGCTTCTCT+TGG | 0.336520 | 6.3:-32223251 | MS.gene07983:CDS |
AACCAATGCATACCCGAAAA+AGG | 0.340165 | 6.3:+32222418 | None:intergenic |
TTGGGAAGTGGTTTGGTTTG+AGG | 0.350357 | 6.3:-32226493 | MS.gene07983:CDS |
GTTCAAACTGGAATCGCGTT+TGG | 0.350909 | 6.3:-32226512 | MS.gene07983:CDS |
GCTACGGACTTTGTCACTCT+TGG | 0.357692 | 6.3:-32219004 | MS.gene07983:CDS |
GCTGATATTACGAACTCCTT+TGG | 0.362238 | 6.3:+32218694 | None:intergenic |
TGTCTGTAGCCTTGCGGTAC+TGG | 0.364534 | 6.3:-32217773 | MS.gene07983:intron |
GCTGTTACAAAGGCTTTAAC+AGG | 0.367894 | 6.3:-32218865 | MS.gene07983:intron |
AATAATTGCTGCTGGGATTC+CGG | 0.377025 | 6.3:+32215685 | None:intergenic |
CACACCCTGGAAATCTTCTT+AGG | 0.378467 | 6.3:-32219760 | MS.gene07983:CDS |
TGCACTTGGGCTAGCTTCCT+TGG | 0.384100 | 6.3:-32216583 | MS.gene07983:CDS |
AAGGCAACTTCAGTGGAAAA+TGG | 0.386325 | 6.3:+32223338 | None:intergenic |
TAAGTTGACTATATCTTCTT+CGG | 0.388362 | 6.3:+32216506 | None:intergenic |
ATTTCAATTGCCAGCTAACT+TGG | 0.391080 | 6.3:-32215665 | MS.gene07983:CDS |
GATGTCCTAAGAAGATTTCC+AGG | 0.391118 | 6.3:+32219755 | None:intergenic |
TCGAGCGGATGAGATGTTTC+AGG | 0.394314 | 6.3:-32226450 | MS.gene07983:intron |
GGAGTTCGTAATATCAGCTT+TGG | 0.397034 | 6.3:-32218689 | MS.gene07983:CDS |
CTACGGACTTTGTCACTCTT+GGG | 0.399542 | 6.3:-32219003 | MS.gene07983:intron |
TGCTGCTGCTTCTCTTGGCC+AGG | 0.399547 | 6.3:-32223246 | MS.gene07983:intron |
ATCGCGTTTGGGAAGTGGTT+TGG | 0.402365 | 6.3:-32226500 | MS.gene07983:CDS |
AATCTCCTCGCAACAACAAT+TGG | 0.405601 | 6.3:+32226536 | None:intergenic |
TGAAGGCGCAGATTCGAAAA+TGG | 0.411353 | 6.3:-32216918 | MS.gene07983:CDS |
CAAGCAATGGTATCAAGTTC+AGG | 0.411816 | 6.3:-32221022 | MS.gene07983:intron |
CTGGAATCGCGTTTGGGAAG+TGG | 0.416715 | 6.3:-32226505 | MS.gene07983:CDS |
CTCTTGTTCAATCATGTTGA+AGG | 0.420980 | 6.3:+32223319 | None:intergenic |
GAAGCAGCAGCAACAGGCTC+GGG | 0.422444 | 6.3:+32223257 | None:intergenic |
CCAAGAGAAGCAGCAGCAAC+AGG | 0.422729 | 6.3:+32223251 | None:intergenic |
ATCAGCTTTGGAGACCTTCT+GGG | 0.425108 | 6.3:-32218677 | MS.gene07983:CDS |
CTGTCCTGTTCTGCGAAGCC+TGG | 0.426035 | 6.3:+32223113 | None:intergenic |
TGCAGAGCTAAGGAAAATAT+TGG | 0.431754 | 6.3:-32224817 | MS.gene07983:CDS |
TTCAGATGGTATCTTTACTA+AGG | 0.432126 | 6.3:+32216937 | None:intergenic |
GCGAGGAGATTGGTTCAAAC+TGG | 0.435394 | 6.3:-32226524 | MS.gene07983:CDS |
GGAGACCTTCTGGGAGACTT+AGG | 0.438773 | 6.3:-32218668 | MS.gene07983:CDS |
GTCGGAAGCGGAAACGTTAG+AGG | 0.439417 | 6.3:-32226600 | MS.gene07983:CDS |
TCTGTGGACAGGAACTTATA+TGG | 0.440276 | 6.3:-32220438 | MS.gene07983:intron |
CAAGCCAGGCTTCGCAGAAC+AGG | 0.441419 | 6.3:-32223117 | MS.gene07983:CDS |
CTGCTGCGAGAACTATCAAA+AGG | 0.443736 | 6.3:-32215621 | MS.gene07983:CDS |
TTCAAACTGGAATCGCGTTT+GGG | 0.445466 | 6.3:-32226511 | MS.gene07983:CDS |
GAGAAAGTTGTCAGAAGTAA+AGG | 0.451385 | 6.3:-32219970 | MS.gene07983:CDS |
TTCAATCAACTTCTTGAGTG+TGG | 0.451469 | 6.3:-32219800 | MS.gene07983:CDS |
AAGAAGATATAGTCAACTTA+AGG | 0.453408 | 6.3:-32216503 | MS.gene07983:CDS |
ACAGCTTCTTTCTCTGCAGT+TGG | 0.454041 | 6.3:+32218883 | None:intergenic |
AACTGTTGAACCAAGTTAGC+TGG | 0.464113 | 6.3:+32215655 | None:intergenic |
TTCGTTCACACTAACAGAAA+AGG | 0.464158 | 6.3:-32216879 | MS.gene07983:intron |
AATTGTTGTTGCGAGGAGAT+TGG | 0.466579 | 6.3:-32226534 | MS.gene07983:CDS |
GCAATTGAAATAATTGCTGC+TGG | 0.469883 | 6.3:+32215677 | None:intergenic |
AACCCGGACTACAAAGTCTT+GGG | 0.470946 | 6.3:-32217730 | MS.gene07983:CDS |
TACAGTATTTGATTCTGGTC+GGG | 0.471123 | 6.3:+32215928 | None:intergenic |
GTACTGGAAGGAATTGCAAT+TGG | 0.472242 | 6.3:-32217757 | MS.gene07983:CDS |
AGGAAAATATTGGTGGAACT+TGG | 0.476645 | 6.3:-32224807 | MS.gene07983:CDS |
AATTGAAGGTTTATCAAGCC+AGG | 0.479323 | 6.3:-32223131 | MS.gene07983:intron |
AAAGGATCTTTACCTGATTG+AGG | 0.480690 | 6.3:-32219952 | MS.gene07983:intron |
TAACCCGGACTACAAAGTCT+TGG | 0.482040 | 6.3:-32217731 | MS.gene07983:CDS |
TTTCAAAGAAGACCTCAATC+AGG | 0.482182 | 6.3:+32219940 | None:intergenic |
ACAAGAGCTTGGTTTATCCT+TGG | 0.482656 | 6.3:-32223303 | MS.gene07983:CDS |
TTTCCGCTTCCGACACACTT+AGG | 0.486761 | 6.3:+32226609 | None:intergenic |
AGAAGCAGCAGCAACAGGCT+CGG | 0.489855 | 6.3:+32223256 | None:intergenic |
TGCCCAAGACTTTGTAGTCC+GGG | 0.490579 | 6.3:+32217728 | None:intergenic |
AACATGATTGAACAAGAGCT+TGG | 0.490776 | 6.3:-32223314 | MS.gene07983:CDS |
GGCATATATCAAAATTGCTC+AGG | 0.493388 | 6.3:-32224210 | MS.gene07983:CDS |
CTGCCCAAGACTTTGTAGTC+CGG | 0.493514 | 6.3:+32217727 | None:intergenic |
AACAGGAAGAATGTCTTGAA+TGG | 0.494577 | 6.3:+32215867 | None:intergenic |
AATATTGGTGGAACTTGGTC+CGG | 0.495691 | 6.3:-32224802 | MS.gene07983:intron |
CGACCTAAGTGTGTCGGAAG+CGG | 0.495806 | 6.3:-32226612 | MS.gene07983:CDS |
GCTTCTTTCTCTGCAGTTGG+TGG | 0.500011 | 6.3:+32218886 | None:intergenic |
TACAATGGTTGATTCGACTC+TGG | 0.500855 | 6.3:-32231621 | None:intergenic |
TCAATCAACTTCTTGAGTGT+GGG | 0.503138 | 6.3:-32219799 | MS.gene07983:CDS |
TCAGGAATGACGGAAAGAAC+AGG | 0.508934 | 6.3:+32215850 | None:intergenic |
CTAAGAAGATTTCCAGGGTG+TGG | 0.512895 | 6.3:+32219761 | None:intergenic |
CAGGCTTCGCAGAACAGGAC+AGG | 0.514638 | 6.3:-32223112 | MS.gene07983:CDS |
TTCGAATCTGCGCCTTCAGA+TGG | 0.516060 | 6.3:+32216923 | None:intergenic |
CTACAAAACTTACAATATTG+AGG | 0.517150 | 6.3:+32216430 | None:intergenic |
GATAGTTCTCGCAGCAGCGC+GGG | 0.517491 | 6.3:+32215627 | None:intergenic |
AGGTTAGAGCTGCAGAGCTA+AGG | 0.520960 | 6.3:-32224827 | MS.gene07983:CDS |
GGAAATTGCAGCTTGAACAC+CGG | 0.521359 | 6.3:+32223065 | None:intergenic |
TTCCAAAATGCTGTTTCCAA+AGG | 0.531054 | 6.3:-32218710 | MS.gene07983:CDS |
CTCTGAGAAAATTTCAGCCA+AGG | 0.532002 | 6.3:+32223286 | None:intergenic |
TCTTGCCGCAGCTGTTTCCA+AGG | 0.535917 | 6.3:+32216566 | None:intergenic |
TGCAGGCAGTTGTCGATGAG+TGG | 0.539064 | 6.3:-32222449 | MS.gene07983:intron |
GCAAGGTCCTTGTCATGGAA+TGG | 0.539892 | 6.3:-32220365 | MS.gene07983:CDS |
AGATTCGAAAATGGTTATGA+AGG | 0.542153 | 6.3:-32216909 | MS.gene07983:CDS |
CCCCTGATAGTAATAGCATA+AGG | 0.543212 | 6.3:+32216469 | None:intergenic |
TCTTGGGCAGTACTTATCCA+TGG | 0.547505 | 6.3:-32217714 | MS.gene07983:CDS |
CATGTTGAAGGCAACTTCAG+TGG | 0.548869 | 6.3:+32223331 | None:intergenic |
GAAATTGCAGCTTGAACACC+GGG | 0.549618 | 6.3:+32223066 | None:intergenic |
ATGTAGGGTTTAGATGCACT+TGG | 0.550374 | 6.3:-32216597 | MS.gene07983:intron |
GCTGGGCTGGCTAAAAGAGC+AGG | 0.551138 | 6.3:-32223015 | MS.gene07983:CDS |
GTACAGTATTTGATTCTGGT+CGG | 0.553287 | 6.3:+32215927 | None:intergenic |
CCTTGTCATGGAATGGATTG+AGG | 0.554585 | 6.3:-32220358 | MS.gene07983:intron |
GCCTTATGCTATTACTATCA+GGG | 0.556826 | 6.3:-32216470 | MS.gene07983:CDS |
TAGATTTACCTCAGGAATGA+CGG | 0.561552 | 6.3:+32215840 | None:intergenic |
AACGCAAGATCAAAATGTCA+AGG | 0.562150 | 6.3:+32223043 | None:intergenic |
AATTGCAATTGGCTTTAACC+CGG | 0.563388 | 6.3:-32217746 | MS.gene07983:CDS |
TGTAGCCTTGCGGTACTGGA+AGG | 0.563866 | 6.3:-32217769 | MS.gene07983:intron |
AACTCGCAAGGTCCTTGTCA+TGG | 0.566536 | 6.3:-32220370 | MS.gene07983:CDS |
ATAGTAATAGCATAAGGCGT+TGG | 0.567548 | 6.3:+32216475 | None:intergenic |
CCAAAGAAGATCTAAGCTGA+GGG | 0.567593 | 6.3:+32217662 | None:intergenic |
TACAATAATGAAGCAAGCAA+TGG | 0.574022 | 6.3:-32221035 | MS.gene07983:CDS |
CTGTCAGCAAAGACTCAAGC+CGG | 0.576804 | 6.3:+32217437 | None:intergenic |
ACTTCTCACTTGTTATCCGA+AGG | 0.577116 | 6.3:-32217861 | MS.gene07983:intron |
TAAGAAGATTTCCAGGGTGT+GGG | 0.577245 | 6.3:+32219762 | None:intergenic |
GCAGGCAGTTGTCGATGAGT+GGG | 0.578173 | 6.3:-32222448 | MS.gene07983:intron |
ATAACAAGTGAGAAGTATGA+AGG | 0.579938 | 6.3:+32217868 | None:intergenic |
ACGCAAGATCAAAATGTCAA+GGG | 0.580070 | 6.3:+32223044 | None:intergenic |
GTGTACTCTGTGTACATCAA+AGG | 0.581508 | 6.3:+32220393 | None:intergenic |
TTTCTGTTAGTGTGAACGAA+AGG | 0.583213 | 6.3:+32216882 | None:intergenic |
TATCATGCAGACCCACACCC+TGG | 0.585654 | 6.3:-32219773 | MS.gene07983:CDS |
TTCAAACAAGAATTGCGTGA+TGG | 0.588415 | 6.3:-32219076 | MS.gene07983:CDS |
TGTTCTTTCCGTCATTCCTG+AGG | 0.588868 | 6.3:-32215848 | MS.gene07983:intron |
CAATTGAAATAATTGCTGCT+GGG | 0.591793 | 6.3:+32215678 | None:intergenic |
TGCTGCGAGAACTATCAAAA+GGG | 0.593150 | 6.3:-32215620 | MS.gene07983:CDS |
GAAAATAAGAAATTACTGAA+AGG | 0.596054 | 6.3:+32216540 | None:intergenic |
TAATAGCATAAGGCGTTGGA+AGG | 0.598040 | 6.3:+32216479 | None:intergenic |
AATCTTCTTAGGACATCTGA+TGG | 0.602700 | 6.3:-32219749 | MS.gene07983:CDS |
AGAGAAAGAAGCTGTTACAA+AGG | 0.607470 | 6.3:-32218875 | MS.gene07983:CDS |
ATATGGTTCTATACAAGATG+TGG | 0.611017 | 6.3:-32220421 | MS.gene07983:CDS |
AATTGTTCAAGAATTTGCCA+AGG | 0.611754 | 6.3:-32216744 | MS.gene07983:intron |
GAAAACCAATTGTTGTTGCG+AGG | 0.612179 | 6.3:-32226541 | MS.gene07983:CDS |
TCCAAAGAAGATCTAAGCTG+AGG | 0.616907 | 6.3:+32217661 | None:intergenic |
GAATCAAATACTGTACTCAA+AGG | 0.617773 | 6.3:-32215920 | MS.gene07983:CDS |
GCTTGAGTCTTTGCTGACAG+AGG | 0.618294 | 6.3:-32217434 | MS.gene07983:intron |
AGAGCTAAGGAAAATATTGG+TGG | 0.619512 | 6.3:-32224814 | MS.gene07983:CDS |
AATTGCTGCTGGGATTCCGG+TGG | 0.620635 | 6.3:+32215688 | None:intergenic |
ATGTAAATTTCAGCTCCCAC+CGG | 0.623839 | 6.3:-32215704 | MS.gene07983:intron |
CCTCAATCCATTCCATGACA+AGG | 0.624850 | 6.3:+32220358 | None:intergenic |
CAATTCCTTCCAGTACCGCA+AGG | 0.625056 | 6.3:+32217764 | None:intergenic |
TGGTTCTATACAAGATGTGG+TGG | 0.625881 | 6.3:-32220418 | MS.gene07983:CDS |
TGTAGGGTTTAGATGCACTT+GGG | 0.630347 | 6.3:-32216596 | MS.gene07983:intron |
TGTTGCAGGGTGGATTTGTG+AGG | 0.637741 | 6.3:-32216772 | MS.gene07983:intron |
TTAGTAAAGATACCATCTGA+AGG | 0.640093 | 6.3:-32216935 | MS.gene07983:CDS |
ATTGCTGCTGGGATTCCGGT+GGG | 0.640904 | 6.3:+32215689 | None:intergenic |
CTTATTCGACCTAAGTGTGT+CGG | 0.641617 | 6.3:-32226618 | MS.gene07983:CDS |
CCTTATGCTATTACTATCAG+GGG | 0.647224 | 6.3:-32216469 | MS.gene07983:CDS |
AGCTTCCTTGGAAACAGCTG+CGG | 0.647682 | 6.3:-32216571 | MS.gene07983:CDS |
TGTCATATAGGGAGAGACAA+AGG | 0.652782 | 6.3:-32215956 | MS.gene07983:intron |
ATATTCTGTCTGTAGCCTTG+CGG | 0.658623 | 6.3:-32217779 | MS.gene07983:intron |
CACAGAGTACACAACTCGCA+AGG | 0.664553 | 6.3:-32220382 | MS.gene07983:CDS |
TGATAGTTCTCGCAGCAGCG+CGG | 0.673188 | 6.3:+32215626 | None:intergenic |
GAAAGCTCATCTAGATACGA+TGG | 0.674105 | 6.3:+32223383 | None:intergenic |
TAGTTCCTAAGTCTCCCAGA+AGG | 0.684087 | 6.3:+32218663 | None:intergenic |
ATGTCCTAAGAAGATTTCCA+GGG | 0.685364 | 6.3:+32219756 | None:intergenic |
GCTGTTAAAGTACAAAGACC+CGG | 0.692000 | 6.3:-32223084 | MS.gene07983:CDS |
AGCTCATCTAGATACGATGG+TGG | 0.692241 | 6.3:+32223386 | None:intergenic |
CAAAGAAGATCTAAGCTGAG+GGG | 0.721571 | 6.3:+32217663 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.3 | gene | 32215609 | 32231639 | 32215609 | ID=MS.gene07983 |
chr6.3 | mRNA | 32215609 | 32231639 | 32215609 | ID=MS.gene07983.t1;Parent=MS.gene07983 |
chr6.3 | exon | 32231595 | 32231639 | 32231595 | ID=MS.gene07983.t1.exon1;Parent=MS.gene07983.t1 |
chr6.3 | CDS | 32231595 | 32231639 | 32231595 | ID=cds.MS.gene07983.t1;Parent=MS.gene07983.t1 |
chr6.3 | exon | 32226451 | 32226648 | 32226451 | ID=MS.gene07983.t1.exon2;Parent=MS.gene07983.t1 |
chr6.3 | CDS | 32226451 | 32226648 | 32226451 | ID=cds.MS.gene07983.t1;Parent=MS.gene07983.t1 |
chr6.3 | exon | 32224803 | 32224847 | 32224803 | ID=MS.gene07983.t1.exon3;Parent=MS.gene07983.t1 |
chr6.3 | CDS | 32224803 | 32224847 | 32224803 | ID=cds.MS.gene07983.t1;Parent=MS.gene07983.t1 |
chr6.3 | exon | 32224193 | 32224231 | 32224193 | ID=MS.gene07983.t1.exon4;Parent=MS.gene07983.t1 |
chr6.3 | CDS | 32224193 | 32224231 | 32224193 | ID=cds.MS.gene07983.t1;Parent=MS.gene07983.t1 |
chr6.3 | exon | 32223247 | 32223417 | 32223247 | ID=MS.gene07983.t1.exon5;Parent=MS.gene07983.t1 |
chr6.3 | CDS | 32223247 | 32223417 | 32223247 | ID=cds.MS.gene07983.t1;Parent=MS.gene07983.t1 |
chr6.3 | exon | 32222993 | 32223145 | 32222993 | ID=MS.gene07983.t1.exon6;Parent=MS.gene07983.t1 |
chr6.3 | CDS | 32222993 | 32223145 | 32222993 | ID=cds.MS.gene07983.t1;Parent=MS.gene07983.t1 |
chr6.3 | exon | 32222431 | 32222466 | 32222431 | ID=MS.gene07983.t1.exon7;Parent=MS.gene07983.t1 |
chr6.3 | CDS | 32222431 | 32222466 | 32222431 | ID=cds.MS.gene07983.t1;Parent=MS.gene07983.t1 |
chr6.3 | exon | 32221023 | 32221066 | 32221023 | ID=MS.gene07983.t1.exon8;Parent=MS.gene07983.t1 |
chr6.3 | CDS | 32221023 | 32221066 | 32221023 | ID=cds.MS.gene07983.t1;Parent=MS.gene07983.t1 |
chr6.3 | exon | 32220359 | 32220449 | 32220359 | ID=MS.gene07983.t1.exon9;Parent=MS.gene07983.t1 |
chr6.3 | CDS | 32220359 | 32220449 | 32220359 | ID=cds.MS.gene07983.t1;Parent=MS.gene07983.t1 |
chr6.3 | exon | 32219953 | 32219994 | 32219953 | ID=MS.gene07983.t1.exon10;Parent=MS.gene07983.t1 |
chr6.3 | CDS | 32219953 | 32219994 | 32219953 | ID=cds.MS.gene07983.t1;Parent=MS.gene07983.t1 |
chr6.3 | exon | 32219732 | 32219840 | 32219732 | ID=MS.gene07983.t1.exon11;Parent=MS.gene07983.t1 |
chr6.3 | CDS | 32219732 | 32219840 | 32219732 | ID=cds.MS.gene07983.t1;Parent=MS.gene07983.t1 |
chr6.3 | exon | 32219004 | 32219118 | 32219004 | ID=MS.gene07983.t1.exon12;Parent=MS.gene07983.t1 |
chr6.3 | CDS | 32219004 | 32219118 | 32219004 | ID=cds.MS.gene07983.t1;Parent=MS.gene07983.t1 |
chr6.3 | exon | 32218866 | 32218915 | 32218866 | ID=MS.gene07983.t1.exon13;Parent=MS.gene07983.t1 |
chr6.3 | CDS | 32218866 | 32218915 | 32218866 | ID=cds.MS.gene07983.t1;Parent=MS.gene07983.t1 |
chr6.3 | exon | 32218659 | 32218737 | 32218659 | ID=MS.gene07983.t1.exon14;Parent=MS.gene07983.t1 |
chr6.3 | CDS | 32218659 | 32218737 | 32218659 | ID=cds.MS.gene07983.t1;Parent=MS.gene07983.t1 |
chr6.3 | exon | 32217862 | 32217912 | 32217862 | ID=MS.gene07983.t1.exon15;Parent=MS.gene07983.t1 |
chr6.3 | CDS | 32217862 | 32217912 | 32217862 | ID=cds.MS.gene07983.t1;Parent=MS.gene07983.t1 |
chr6.3 | exon | 32217645 | 32217786 | 32217645 | ID=MS.gene07983.t1.exon16;Parent=MS.gene07983.t1 |
chr6.3 | CDS | 32217645 | 32217786 | 32217645 | ID=cds.MS.gene07983.t1;Parent=MS.gene07983.t1 |
chr6.3 | exon | 32217435 | 32217479 | 32217435 | ID=MS.gene07983.t1.exon17;Parent=MS.gene07983.t1 |
chr6.3 | CDS | 32217435 | 32217479 | 32217435 | ID=cds.MS.gene07983.t1;Parent=MS.gene07983.t1 |
chr6.3 | exon | 32216880 | 32216984 | 32216880 | ID=MS.gene07983.t1.exon18;Parent=MS.gene07983.t1 |
chr6.3 | CDS | 32216880 | 32216984 | 32216880 | ID=cds.MS.gene07983.t1;Parent=MS.gene07983.t1 |
chr6.3 | exon | 32216745 | 32216786 | 32216745 | ID=MS.gene07983.t1.exon19;Parent=MS.gene07983.t1 |
chr6.3 | CDS | 32216745 | 32216786 | 32216745 | ID=cds.MS.gene07983.t1;Parent=MS.gene07983.t1 |
chr6.3 | exon | 32216443 | 32216613 | 32216443 | ID=MS.gene07983.t1.exon20;Parent=MS.gene07983.t1 |
chr6.3 | CDS | 32216443 | 32216613 | 32216443 | ID=cds.MS.gene07983.t1;Parent=MS.gene07983.t1 |
chr6.3 | exon | 32215849 | 32215968 | 32215849 | ID=MS.gene07983.t1.exon21;Parent=MS.gene07983.t1 |
chr6.3 | CDS | 32215849 | 32215968 | 32215849 | ID=cds.MS.gene07983.t1;Parent=MS.gene07983.t1 |
chr6.3 | exon | 32215609 | 32215713 | 32215609 | ID=MS.gene07983.t1.exon22;Parent=MS.gene07983.t1 |
chr6.3 | CDS | 32215609 | 32215713 | 32215609 | ID=cds.MS.gene07983.t1;Parent=MS.gene07983.t1 |
Gene Sequence |
Protein sequence |