Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08778.t1 | XP_003629706.1 | 70.4 | 479 | 9 | 3 | 1 | 346 | 1 | 479 | 6.70E-165 | 590.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08778.t1 | Q9LHN7 | 43.0 | 465 | 131 | 4 | 11 | 344 | 4 | 465 | 4.9e-84 | 312.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08778.t1 | G7LHY8 | 70.4 | 479 | 9 | 3 | 1 | 346 | 1 | 479 | 4.8e-165 | 590.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049378 | MS.gene08778 | 0.808802 | 2.59E-50 | -1.69E-46 |
| MS.gene049669 | MS.gene08778 | 0.819331 | 1.23E-52 | -1.69E-46 |
| MS.gene050226 | MS.gene08778 | 0.80309 | 4.12E-49 | -1.69E-46 |
| MS.gene050227 | MS.gene08778 | 0.823955 | 1.05E-53 | -1.69E-46 |
| MS.gene050228 | MS.gene08778 | 0.8236 | 1.27E-53 | -1.69E-46 |
| MS.gene050642 | MS.gene08778 | 0.832388 | 9.73E-56 | -1.69E-46 |
| MS.gene050680 | MS.gene08778 | 0.845125 | 4.94E-59 | -1.69E-46 |
| MS.gene050750 | MS.gene08778 | 0.820884 | 5.42E-53 | -1.69E-46 |
| MS.gene050953 | MS.gene08778 | 0.805759 | 1.14E-49 | -1.69E-46 |
| MS.gene051983 | MS.gene08778 | 0.846889 | 1.64E-59 | -1.69E-46 |
| MS.gene052176 | MS.gene08778 | 0.847035 | 1.49E-59 | -1.69E-46 |
| MS.gene052190 | MS.gene08778 | 0.806082 | 9.78E-50 | -1.69E-46 |
| MS.gene052309 | MS.gene08778 | -0.816136 | 6.46E-52 | -1.69E-46 |
| MS.gene052333 | MS.gene08778 | 0.850661 | 1.47E-60 | -1.69E-46 |
| MS.gene052389 | MS.gene08778 | 0.812535 | 4.04E-51 | -1.69E-46 |
| MS.gene053166 | MS.gene08778 | 0.806452 | 8.17E-50 | -1.69E-46 |
| MS.gene054291 | MS.gene08778 | -0.822988 | 1.76E-53 | -1.69E-46 |
| MS.gene054468 | MS.gene08778 | 0.811659 | 6.27E-51 | -1.69E-46 |
| MS.gene054610 | MS.gene08778 | 0.812121 | 4.97E-51 | -1.69E-46 |
| MS.gene054930 | MS.gene08778 | 0.803131 | 4.04E-49 | -1.69E-46 |
| MS.gene055225 | MS.gene08778 | 0.804794 | 1.82E-49 | -1.69E-46 |
| MS.gene055356 | MS.gene08778 | 0.815266 | 1.01E-51 | -1.69E-46 |
| MS.gene055358 | MS.gene08778 | 0.82291 | 1.84E-53 | -1.69E-46 |
| MS.gene055367 | MS.gene08778 | 0.827331 | 1.66E-54 | -1.69E-46 |
| MS.gene055701 | MS.gene08778 | 0.861605 | 9.13E-64 | -1.69E-46 |
| MS.gene05595 | MS.gene08778 | 0.803771 | 2.97E-49 | -1.69E-46 |
| MS.gene056087 | MS.gene08778 | 0.843008 | 1.83E-58 | -1.69E-46 |
| MS.gene056506 | MS.gene08778 | 0.829529 | 4.89E-55 | -1.69E-46 |
| MS.gene056979 | MS.gene08778 | 0.837477 | 5.08E-57 | -1.69E-46 |
| MS.gene057026 | MS.gene08778 | 0.821059 | 4.94E-53 | -1.69E-46 |
| MS.gene058142 | MS.gene08778 | 0.811078 | 8.38E-51 | -1.69E-46 |
| MS.gene059247 | MS.gene08778 | 0.817893 | 2.60E-52 | -1.69E-46 |
| MS.gene059609 | MS.gene08778 | 0.809463 | 1.87E-50 | -1.69E-46 |
| MS.gene061040 | MS.gene08778 | -0.842032 | 3.31E-58 | -1.69E-46 |
| MS.gene061114 | MS.gene08778 | -0.874732 | 5.37E-68 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08778.t1 | MTR_8g085630 | 69.198 | 474 | 13 | 4 | 1 | 341 | 1 | 474 | 0.0 | 589 |
| MS.gene08778.t1 | MTR_5g064750 | 43.146 | 445 | 115 | 5 | 35 | 346 | 20 | 459 | 1.80e-101 | 307 |
| MS.gene08778.t1 | MTR_5g026780 | 34.624 | 439 | 156 | 3 | 28 | 335 | 18 | 456 | 1.41e-81 | 256 |
| MS.gene08778.t1 | MTR_5g026780 | 34.624 | 439 | 156 | 3 | 28 | 335 | 34 | 472 | 2.04e-81 | 256 |
| MS.gene08778.t1 | MTR_1g112950 | 35.227 | 440 | 153 | 4 | 28 | 335 | 12 | 451 | 1.58e-80 | 253 |
| MS.gene08778.t1 | MTR_0031s0060 | 34.988 | 423 | 169 | 5 | 29 | 345 | 129 | 551 | 2.13e-74 | 243 |
| MS.gene08778.t1 | MTR_5g005160 | 35.632 | 435 | 149 | 4 | 33 | 336 | 3 | 437 | 5.63e-65 | 213 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08778.t1 | AT3G13620 | 41.970 | 467 | 137 | 5 | 11 | 346 | 4 | 467 | 8.36e-106 | 318 |
| MS.gene08778.t1 | AT1G31830 | 35.189 | 449 | 161 | 3 | 28 | 346 | 37 | 485 | 6.15e-88 | 273 |
| MS.gene08778.t1 | AT1G31830 | 35.189 | 449 | 161 | 3 | 28 | 346 | 21 | 469 | 6.25e-88 | 273 |
| MS.gene08778.t1 | AT5G05630 | 34.375 | 480 | 170 | 6 | 1 | 335 | 1 | 480 | 1.90e-82 | 259 |
| MS.gene08778.t1 | AT1G31820 | 35.619 | 452 | 154 | 4 | 34 | 348 | 30 | 481 | 9.16e-82 | 257 |
| MS.gene08778.t1 | AT3G19553 | 38.043 | 460 | 145 | 7 | 27 | 346 | 9 | 468 | 5.88e-74 | 236 |
Find 67 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTACTTTCTTAACATTCTT+AGG | 0.151243 | 4.2:-12775306 | MS.gene08778:CDS |
| CTCATCTACTTTGAGGTATC+TGG | 0.167645 | 4.2:-12776488 | MS.gene08778:CDS |
| TCTGGAATACTCCAAATAAA+TGG | 0.207381 | 4.2:+12776392 | None:intergenic |
| CTGGGAATTGGTTGAAATAT+TGG | 0.212399 | 4.2:-12775737 | MS.gene08778:CDS |
| AAGGTTCCACTTGGATTCTT+TGG | 0.223454 | 4.2:-12775408 | MS.gene08778:CDS |
| ACTAGCCACAAATACAATTT+TGG | 0.228986 | 4.2:+12775326 | None:intergenic |
| TGCTGGATTGTTAACTTGTT+TGG | 0.231778 | 4.2:-12775856 | MS.gene08778:CDS |
| TTGGATCTTCTTCTTCTCTT+TGG | 0.233772 | 4.2:+12776561 | None:intergenic |
| ACATTAACACAAAGGGTAAA+AGG | 0.251018 | 4.2:+12776063 | None:intergenic |
| CCAGCAAATAACAAAGCTTT+TGG | 0.261342 | 4.2:+12775873 | None:intergenic |
| TTGAAATATTGGATGGAAAT+TGG | 0.269249 | 4.2:-12775726 | MS.gene08778:CDS |
| GGTTATACTGCAGTTGGTTT+AGG | 0.285281 | 4.2:-12776095 | MS.gene08778:CDS |
| CCAAAAGCTTTGTTATTTGC+TGG | 0.287356 | 4.2:-12775873 | MS.gene08778:CDS |
| TACAATGAAAAGACCTTATA+AGG | 0.296408 | 4.2:-12775427 | MS.gene08778:CDS |
| AATCCAAGTGGAACCTTATA+AGG | 0.306194 | 4.2:+12775414 | None:intergenic |
| TGCCACTTGATCAAGAAGTT+TGG | 0.318408 | 4.2:-12775797 | MS.gene08778:CDS |
| CTGGTTTGATTGCTGGGAAT+TGG | 0.320667 | 4.2:-12775749 | MS.gene08778:CDS |
| GGGTTATATAATTCCTTTGT+TGG | 0.320719 | 4.2:-12775835 | MS.gene08778:CDS |
| CAATGGAGTAGGAGATAAAT+TGG | 0.322700 | 4.2:-12775229 | MS.gene08778:CDS |
| GCCACTTGATCAAGAAGTTT+GGG | 0.332993 | 4.2:-12775796 | MS.gene08778:CDS |
| CATGTGGCTGGTTTGATTGC+TGG | 0.333123 | 4.2:-12775756 | MS.gene08778:CDS |
| GTATAGTTTAGGGATGCTTT+TGG | 0.333266 | 4.2:-12775487 | MS.gene08778:intron |
| GCTGGATTGTTAACTTGTTT+GGG | 0.336043 | 4.2:-12775855 | MS.gene08778:CDS |
| AATCTTTCTCATCTACTTTG+AGG | 0.359694 | 4.2:-12776495 | MS.gene08778:CDS |
| TAAACCAGAATAATTCAAAA+AGG | 0.378273 | 4.2:+12776127 | None:intergenic |
| GAGGTATCTGGTGGACCTTA+TGG | 0.387052 | 4.2:-12776476 | MS.gene08778:CDS |
| ATTCCTTTGTTGGCTACTAC+TGG | 0.396954 | 4.2:-12775825 | MS.gene08778:CDS |
| TGGTTTGATTGTAATGTGTT+TGG | 0.404951 | 4.2:-12775388 | MS.gene08778:CDS |
| TGCTACCAAAATTGTATTTG+TGG | 0.406271 | 4.2:-12775331 | MS.gene08778:CDS |
| ATAACAAACCCACCATTTCC+AGG | 0.406978 | 4.2:+12776335 | None:intergenic |
| GTTTAGAAGATGTTGATGAT+AGG | 0.416793 | 4.2:+12776583 | None:intergenic |
| ATGTGGCTGGTTTGATTGCT+GGG | 0.424967 | 4.2:-12775755 | MS.gene08778:CDS |
| GTACTTTCTTAACATTCTTA+GGG | 0.425423 | 4.2:-12775305 | MS.gene08778:CDS |
| TATTCTGGTTTAGCTATAGT+TGG | 0.426561 | 4.2:-12776116 | MS.gene08778:CDS |
| TTGCTTCTTTCCTTAAATTG+AGG | 0.438535 | 4.2:-12775461 | MS.gene08778:CDS |
| CTGGAATACTCCAAATAAAT+GGG | 0.440921 | 4.2:+12776393 | None:intergenic |
| ACTGTTGCTTCTTCACCATA+AGG | 0.446104 | 4.2:+12776461 | None:intergenic |
| TCTGCAGTTAAAAGAGCCTC+TGG | 0.446328 | 4.2:+12776374 | None:intergenic |
| GCTACAACATTCCCTGGAAA+TGG | 0.446788 | 4.2:-12776347 | MS.gene08778:intron |
| AAGTAGATGAGAAAGATTAG+AGG | 0.454596 | 4.2:+12776500 | None:intergenic |
| TGAATCTTTGTAAGTCTAAG+AGG | 0.460463 | 4.2:-12775263 | MS.gene08778:CDS |
| CTAAAATTGATCCTAGTAGA+TGG | 0.462759 | 4.2:-12776025 | MS.gene08778:intron |
| CATTAACACAAAGGGTAAAA+GGG | 0.478523 | 4.2:+12776064 | None:intergenic |
| CCTAAACTTAACCATCTACT+AGG | 0.478755 | 4.2:+12776014 | None:intergenic |
| TTTGGTTCCATCTGTGCTGT+TGG | 0.480095 | 4.2:-12775370 | MS.gene08778:CDS |
| ATCAAAGACATTAACACAAA+GGG | 0.485844 | 4.2:+12776056 | None:intergenic |
| ATCAAGAAGTTTGGGTTGGT+GGG | 0.495054 | 4.2:-12775788 | MS.gene08778:CDS |
| GATCAAGAAGTTTGGGTTGG+TGG | 0.497496 | 4.2:-12775789 | MS.gene08778:CDS |
| ATAGTTGGTTATACTGCAGT+TGG | 0.509080 | 4.2:-12776101 | MS.gene08778:CDS |
| GAAGCAACAGTAAGTGCTGC+AGG | 0.513783 | 4.2:-12776449 | MS.gene08778:CDS |
| AGTAGATGAGAAAGATTAGA+GGG | 0.514522 | 4.2:+12776501 | None:intergenic |
| AGACCTTATAAGGTTCCACT+TGG | 0.526727 | 4.2:-12775417 | MS.gene08778:CDS |
| GAATTAGCTACAACATTCCC+TGG | 0.531597 | 4.2:-12776353 | MS.gene08778:CDS |
| ACATAAACCAACAGCACAGA+TGG | 0.538480 | 4.2:+12775363 | None:intergenic |
| CTTGATCAAGAAGTTTGGGT+TGG | 0.540498 | 4.2:-12775792 | MS.gene08778:CDS |
| TGGATTGAATTCAATGGAGT+AGG | 0.540871 | 4.2:-12775240 | MS.gene08778:CDS |
| AAGAGGTGGATTGAATTCAA+TGG | 0.542090 | 4.2:-12775246 | MS.gene08778:CDS |
| ATCTACTTTGAGGTATCTGG+TGG | 0.545094 | 4.2:-12776485 | MS.gene08778:CDS |
| ACCCAAACTTCTTGATCAAG+TGG | 0.548962 | 4.2:+12775795 | None:intergenic |
| TAACAAACCCACCATTTCCA+GGG | 0.582040 | 4.2:+12776336 | None:intergenic |
| GATAGTGCTAGTACTCTAGC+TGG | 0.592034 | 4.2:-12775924 | MS.gene08778:intron |
| GAATTGGTTGAAATATTGGA+TGG | 0.593097 | 4.2:-12775733 | MS.gene08778:CDS |
| ATCAAACCAAAGAATCCAAG+TGG | 0.609635 | 4.2:+12775402 | None:intergenic |
| ATCTTTGTAAGTCTAAGAGG+TGG | 0.616056 | 4.2:-12775260 | MS.gene08778:CDS |
| ATTTATTTGGAGTATTCCAG+AGG | 0.619283 | 4.2:-12776390 | MS.gene08778:CDS |
| AATCAAAGACATTAACACAA+AGG | 0.628722 | 4.2:+12776055 | None:intergenic |
| GCACCAGTAGTAGCCAACAA+AGG | 0.678385 | 4.2:+12775822 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTTTTTGTATAGTTTA+GGG | - | chr4.2:12776335-12776354 | MS.gene08778:intron | 10.0% |
| !!! | GTTAATTTTTTGTATAGTTT+AGG | - | chr4.2:12776334-12776353 | MS.gene08778:intron | 15.0% |
| !!! | TTATAATTTTCCCATTTATT+TGG | - | chr4.2:12775429-12775448 | MS.gene08778:CDS | 15.0% |
| !! | ACTATACAAAAAATTAACAG+TGG | + | chr4.2:12776332-12776351 | None:intergenic | 20.0% |
| !! | AGATAATCTATACATAGAAT+TGG | + | chr4.2:12775611-12775630 | None:intergenic | 20.0% |
| !! | GATAATCTATACATAGAATT+GGG | + | chr4.2:12775610-12775629 | None:intergenic | 20.0% |
| !! | TAAACCAGAATAATTCAAAA+AGG | + | chr4.2:12775708-12775727 | None:intergenic | 20.0% |
| !! | TGTAAAACTAAAAAAAGACA+TGG | + | chr4.2:12776299-12776318 | None:intergenic | 20.0% |
| !!! | TTTTTGGAACTTGAATTTTT+GGG | - | chr4.2:12775886-12775905 | MS.gene08778:CDS | 20.0% |
| !!! | TTTTTTGGAACTTGAATTTT+TGG | - | chr4.2:12775885-12775904 | MS.gene08778:CDS | 20.0% |
| !!! | TTTTTTTTGTGATTTGGTTT+TGG | + | chr4.2:12775300-12775319 | None:intergenic | 20.0% |
| ! | AATCAAAGACATTAACACAA+AGG | + | chr4.2:12775780-12775799 | None:intergenic | 25.0% |
| ! | AGTACTTTCTTAACATTCTT+AGG | - | chr4.2:12776526-12776545 | MS.gene08778:CDS | 25.0% |
| ! | ATCAAAGACATTAACACAAA+GGG | + | chr4.2:12775779-12775798 | None:intergenic | 25.0% |
| ! | GGATTCATACCAAAAATATT+TGG | - | chr4.2:12776208-12776227 | MS.gene08778:intron | 25.0% |
| ! | GTACTTTCTTAACATTCTTA+GGG | - | chr4.2:12776527-12776546 | MS.gene08778:CDS | 25.0% |
| ! | TACAATGAAAAGACCTTATA+AGG | - | chr4.2:12776405-12776424 | MS.gene08778:CDS | 25.0% |
| ! | TTGAAATATTGGATGGAAAT+TGG | - | chr4.2:12776106-12776125 | MS.gene08778:CDS | 25.0% |
| !! | TACCAAAAATATTTGGTGAA+AGG | - | chr4.2:12776215-12776234 | MS.gene08778:intron | 25.0% |
| !! | TATAAGGTCTTTTCATTGTA+GGG | + | chr4.2:12776405-12776424 | None:intergenic | 25.0% |
| !! | TTATAAGGTCTTTTCATTGT+AGG | + | chr4.2:12776406-12776425 | None:intergenic | 25.0% |
| !! | TTGTCCTTTTTGAATTATTC+TGG | - | chr4.2:12775701-12775720 | MS.gene08778:CDS | 25.0% |
| !!! | GGAATTTTTTCCTCAATTTA+AGG | + | chr4.2:12776384-12776403 | None:intergenic | 25.0% |
| !!! | TGCTAGTTTTTTTTGTGATT+TGG | + | chr4.2:12775306-12775325 | None:intergenic | 25.0% |
| AAGTAGATGAGAAAGATTAG+AGG | + | chr4.2:12775335-12775354 | None:intergenic | 30.0% | |
| AATCCAAGAATTGCAAAAAG+TGG | + | chr4.2:12775410-12775429 | None:intergenic | 30.0% | |
| AATCTTTCTCATCTACTTTG+AGG | - | chr4.2:12775337-12775356 | MS.gene08778:CDS | 30.0% | |
| ACAAAAATAGACACAATACG+AGG | + | chr4.2:12775668-12775687 | None:intergenic | 30.0% | |
| ACATTAACACAAAGGGTAAA+AGG | + | chr4.2:12775772-12775791 | None:intergenic | 30.0% | |
| AGTAGATGAGAAAGATTAGA+GGG | + | chr4.2:12775334-12775353 | None:intergenic | 30.0% | |
| CATTAACACAAAGGGTAAAA+GGG | + | chr4.2:12775771-12775790 | None:intergenic | 30.0% | |
| CTAAAATTGATCCTAGTAGA+TGG | - | chr4.2:12775807-12775826 | MS.gene08778:CDS | 30.0% | |
| CTGGAATACTCCAAATAAAT+GGG | + | chr4.2:12775442-12775461 | None:intergenic | 30.0% | |
| GAATTGGTTGAAATATTGGA+TGG | - | chr4.2:12776099-12776118 | MS.gene08778:CDS | 30.0% | |
| GGGTTATATAATTCCTTTGT+TGG | - | chr4.2:12775997-12776016 | MS.gene08778:intron | 30.0% | |
| TGAATCTTTGTAAGTCTAAG+AGG | - | chr4.2:12776569-12776588 | MS.gene08778:CDS | 30.0% | |
| TGCTACCAAAATTGTATTTG+TGG | - | chr4.2:12776501-12776520 | MS.gene08778:CDS | 30.0% | |
| TGGTTTGATTGTAATGTGTT+TGG | - | chr4.2:12776444-12776463 | MS.gene08778:CDS | 30.0% | |
| TTGCTTCTTTCCTTAAATTG+AGG | - | chr4.2:12776371-12776390 | MS.gene08778:CDS | 30.0% | |
| ! | ACTAGCCACAAATACAATTT+TGG | + | chr4.2:12776509-12776528 | None:intergenic | 30.0% |
| ! | ATTTATTTGGAGTATTCCAG+AGG | - | chr4.2:12775442-12775461 | MS.gene08778:CDS | 30.0% |
| ! | CATCTACTAGGATCAATTTT+AGG | + | chr4.2:12775809-12775828 | None:intergenic | 30.0% |
| ! | GACCTTTCACCAAATATTTT+TGG | + | chr4.2:12776220-12776239 | None:intergenic | 30.0% |
| ! | GGATATTGGAAATTCTTTTG+TGG | - | chr4.2:12775563-12775582 | MS.gene08778:intron | 30.0% |
| ! | TCTGGAATACTCCAAATAAA+TGG | + | chr4.2:12775443-12775462 | None:intergenic | 30.0% |
| !! | AAATGGTGGGTTTGTTATTT+GGG | - | chr4.2:12775502-12775521 | MS.gene08778:intron | 30.0% |
| !! | GCTTTTGGAAAAGTTTTATG+TGG | + | chr4.2:12775947-12775966 | None:intergenic | 30.0% |
| !! | GTTTAGAAGATGTTGATGAT+AGG | + | chr4.2:12775252-12775271 | None:intergenic | 30.0% |
| !! | TATTCTGGTTTAGCTATAGT+TGG | - | chr4.2:12775716-12775735 | MS.gene08778:CDS | 30.0% |
| AATCCAAGTGGAACCTTATA+AGG | + | chr4.2:12776421-12776440 | None:intergenic | 35.0% | |
| ATAGTTGGTTATACTGCAGT+TGG | - | chr4.2:12775731-12775750 | MS.gene08778:CDS | 35.0% | |
| ATCAAACCAAAGAATCCAAG+TGG | + | chr4.2:12776433-12776452 | None:intergenic | 35.0% | |
| ATCTTTGTAAGTCTAAGAGG+TGG | - | chr4.2:12776572-12776591 | MS.gene08778:CDS | 35.0% | |
| CAATGGAGTAGGAGATAAAT+TGG | - | chr4.2:12776603-12776622 | MS.gene08778:CDS | 35.0% | |
| CCTAAACTTAACCATCTACT+AGG | + | chr4.2:12775821-12775840 | None:intergenic | 35.0% | |
| CCTAGTAGATGGTTAAGTTT+AGG | - | chr4.2:12775818-12775837 | MS.gene08778:CDS | 35.0% | |
| CTGGGAATTGGTTGAAATAT+TGG | - | chr4.2:12776095-12776114 | MS.gene08778:CDS | 35.0% | |
| GAAATCAAAATTGCCATCCA+AGG | + | chr4.2:12776259-12776278 | None:intergenic | 35.0% | |
| TGGATTGAATTCAATGGAGT+AGG | - | chr4.2:12776592-12776611 | MS.gene08778:CDS | 35.0% | |
| TTGGATCTTCTTCTTCTCTT+TGG | + | chr4.2:12775274-12775293 | None:intergenic | 35.0% | |
| ! | AGTGCTGCATATCAACTTTT+AGG | - | chr4.2:12776172-12776191 | MS.gene08778:CDS | 35.0% |
| ! | ATGAAGCTTTTGGTCCATTT+TGG | - | chr4.2:12775528-12775547 | MS.gene08778:intron | 35.0% |
| ! | ATGGTTAAGTTTAGGACAAG+AGG | - | chr4.2:12775826-12775845 | MS.gene08778:CDS | 35.0% |
| ! | ATTTGGGCTAATGAAGCTTT+TGG | - | chr4.2:12775518-12775537 | MS.gene08778:intron | 35.0% |
| ! | CCAGCAAATAACAAAGCTTT+TGG | + | chr4.2:12775962-12775981 | None:intergenic | 35.0% |
| ! | GTATAGTTTAGGGATGCTTT+TGG | - | chr4.2:12776345-12776364 | MS.gene08778:intron | 35.0% |
| ! | TATTTGGTGAAAGGTCAAAG+TGG | - | chr4.2:12776224-12776243 | MS.gene08778:intron | 35.0% |
| ! | TGAAGCTTTTGGTCCATTTT+GGG | - | chr4.2:12775529-12775548 | MS.gene08778:intron | 35.0% |
| ! | TGGTTAAGTTTAGGACAAGA+GGG | - | chr4.2:12775827-12775846 | MS.gene08778:CDS | 35.0% |
| !! | AAGAGGTGGATTGAATTCAA+TGG | - | chr4.2:12776586-12776605 | MS.gene08778:CDS | 35.0% |
| !! | ACTTTTAGGTATGTCTGACT+TGG | - | chr4.2:12776186-12776205 | MS.gene08778:intron | 35.0% |
| !! | CCAAAAGCTTTGTTATTTGC+TGG | - | chr4.2:12775959-12775978 | MS.gene08778:intron | 35.0% |
| !! | CTTTTAGGTATGTCTGACTT+GGG | - | chr4.2:12776187-12776206 | MS.gene08778:intron | 35.0% |
| !! | GAAATGGTGGGTTTGTTATT+TGG | - | chr4.2:12775501-12775520 | MS.gene08778:intron | 35.0% |
| !! | GCTGGATTGTTAACTTGTTT+GGG | - | chr4.2:12775977-12775996 | MS.gene08778:intron | 35.0% |
| !! | TGCTGGATTGTTAACTTGTT+TGG | - | chr4.2:12775976-12775995 | MS.gene08778:intron | 35.0% |
| !!! | GGTGCTGTTTTGTCAATTAT+TGG | - | chr4.2:12776127-12776146 | MS.gene08778:CDS | 35.0% |
| !!! | TGTGATTTGGTTTTGGTGTT+TGG | + | chr4.2:12775293-12775312 | None:intergenic | 35.0% |
| AAGGTTCCACTTGGATTCTT+TGG | - | chr4.2:12776424-12776443 | MS.gene08778:CDS | 40.0% | |
| ACATAAACCAACAGCACAGA+TGG | + | chr4.2:12776472-12776491 | None:intergenic | 40.0% | |
| ACCCAAACTTCTTGATCAAG+TGG | + | chr4.2:12776040-12776059 | None:intergenic | 40.0% | |
| AGACCTTATAAGGTTCCACT+TGG | - | chr4.2:12776415-12776434 | MS.gene08778:CDS | 40.0% | |
| ATAACAAACCCACCATTTCC+AGG | + | chr4.2:12775500-12775519 | None:intergenic | 40.0% | |
| CAAAGTGGTTTAACACACCT+TGG | - | chr4.2:12776239-12776258 | MS.gene08778:intron | 40.0% | |
| CTTGATCAAGAAGTTTGGGT+TGG | - | chr4.2:12776040-12776059 | MS.gene08778:CDS | 40.0% | |
| GAATTAGCTACAACATTCCC+TGG | - | chr4.2:12775479-12775498 | MS.gene08778:CDS | 40.0% | |
| GCCACTTGATCAAGAAGTTT+GGG | - | chr4.2:12776036-12776055 | MS.gene08778:CDS | 40.0% | |
| GGTAAACCTGAAGACAAAAC+AGG | + | chr4.2:12775647-12775666 | None:intergenic | 40.0% | |
| TAACAAACCCACCATTTCCA+GGG | + | chr4.2:12775499-12775518 | None:intergenic | 40.0% | |
| ! | AAGAGGGTGTGGAAAAAGAT+TGG | - | chr4.2:12775843-12775862 | MS.gene08778:CDS | 40.0% |
| ! | AAGCTTTTGGTCCATTTTGG+GGG | - | chr4.2:12775531-12775550 | MS.gene08778:intron | 40.0% |
| ! | AATTTTGTGCTGCAGAGTGA+AGG | + | chr4.2:12775229-12775248 | None:intergenic | 40.0% |
| ! | ACTGTTGCTTCTTCACCATA+AGG | + | chr4.2:12775374-12775393 | None:intergenic | 40.0% |
| ! | ATTCCTTTGTTGGCTACTAC+TGG | - | chr4.2:12776007-12776026 | MS.gene08778:intron | 40.0% |
| ! | ATTTTGTGCTGCAGAGTGAA+GGG | + | chr4.2:12775228-12775247 | None:intergenic | 40.0% |
| ! | GAAGCTTTTGGTCCATTTTG+GGG | - | chr4.2:12775530-12775549 | MS.gene08778:intron | 40.0% |
| ! | GGTTATACTGCAGTTGGTTT+AGG | - | chr4.2:12775737-12775756 | MS.gene08778:CDS | 40.0% |
| ! | GTGATTCCTGTTTTGTCTTC+AGG | - | chr4.2:12775638-12775657 | MS.gene08778:intron | 40.0% |
| ! | TGCCACTTGATCAAGAAGTT+TGG | - | chr4.2:12776035-12776054 | MS.gene08778:CDS | 40.0% |
| !! | ATCAAGAAGTTTGGGTTGGT+GGG | - | chr4.2:12776044-12776063 | MS.gene08778:CDS | 40.0% |
| !! | ATCTACTTTGAGGTATCTGG+TGG | - | chr4.2:12775347-12775366 | MS.gene08778:CDS | 40.0% |
| !! | CTCATCTACTTTGAGGTATC+TGG | - | chr4.2:12775344-12775363 | MS.gene08778:CDS | 40.0% |
| !!! | GGTCCACTTTTTGCAATTCT+TGG | - | chr4.2:12775404-12775423 | MS.gene08778:CDS | 40.0% |
| ACAACATTCCCTGGAAATGG+TGG | - | chr4.2:12775488-12775507 | MS.gene08778:intron | 45.0% | |
| CAACATTCCCTGGAAATGGT+GGG | - | chr4.2:12775489-12775508 | MS.gene08778:intron | 45.0% | |
| GATAGTGCTAGTACTCTAGC+TGG | - | chr4.2:12775908-12775927 | MS.gene08778:CDS | 45.0% | |
| GCTACAACATTCCCTGGAAA+TGG | - | chr4.2:12775485-12775504 | MS.gene08778:intron | 45.0% | |
| GTGGTTTAACACACCTTGGA+TGG | - | chr4.2:12776243-12776262 | MS.gene08778:intron | 45.0% | |
| TCTGCAGTTAAAAGAGCCTC+TGG | + | chr4.2:12775461-12775480 | None:intergenic | 45.0% | |
| ! | AAGTTTAGGACAAGAGGGTG+TGG | - | chr4.2:12775832-12775851 | MS.gene08778:CDS | 45.0% |
| ! | CTGGTTTGATTGCTGGGAAT+TGG | - | chr4.2:12776083-12776102 | MS.gene08778:CDS | 45.0% |
| ! | TTTGGTTCCATCTGTGCTGT+TGG | - | chr4.2:12776462-12776481 | MS.gene08778:CDS | 45.0% |
| !! | ATGTGGCTGGTTTGATTGCT+GGG | - | chr4.2:12776077-12776096 | MS.gene08778:CDS | 45.0% |
| !! | CCATTTTGGGGGTCTCTTAT+GGG | - | chr4.2:12775542-12775561 | MS.gene08778:intron | 45.0% |
| !! | GATCAAGAAGTTTGGGTTGG+TGG | - | chr4.2:12776043-12776062 | MS.gene08778:CDS | 45.0% |
| !! | TCCATTTTGGGGGTCTCTTA+TGG | - | chr4.2:12775541-12775560 | MS.gene08778:intron | 45.0% |
| !! | TGGTGGGTATTTTGCACATG+TGG | - | chr4.2:12776060-12776079 | MS.gene08778:CDS | 45.0% |
| !!! | TTTTTTTTAATACTATTTTT+TGG | - | chr4.2:12775870-12775889 | MS.gene08778:CDS | 5.0% |
| CCCATAAGAGACCCCCAAAA+TGG | + | chr4.2:12775545-12775564 | None:intergenic | 50.0% | |
| GCACCAGTAGTAGCCAACAA+AGG | + | chr4.2:12776013-12776032 | None:intergenic | 50.0% | |
| GGGGGTCTCTTATGGGATAT+TGG | - | chr4.2:12775549-12775568 | MS.gene08778:intron | 50.0% | |
| ! | GAAGCAACAGTAAGTGCTGC+AGG | - | chr4.2:12775383-12775402 | MS.gene08778:CDS | 50.0% |
| ! | GAGGTATCTGGTGGACCTTA+TGG | - | chr4.2:12775356-12775375 | MS.gene08778:CDS | 50.0% |
| ! | GGGTATTTTGCACATGTGGC+TGG | - | chr4.2:12776064-12776083 | MS.gene08778:CDS | 50.0% |
| !! | CATGTGGCTGGTTTGATTGC+TGG | - | chr4.2:12776076-12776095 | MS.gene08778:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 12775203 | 12776651 | 12775203 | ID=MS.gene08778 |
| chr4.2 | mRNA | 12775203 | 12776651 | 12775203 | ID=MS.gene08778.t1;Parent=MS.gene08778 |
| chr4.2 | exon | 12776348 | 12776651 | 12776348 | ID=MS.gene08778.t1.exon1;Parent=MS.gene08778.t1 |
| chr4.2 | CDS | 12776348 | 12776651 | 12776348 | ID=cds.MS.gene08778.t1;Parent=MS.gene08778.t1 |
| chr4.2 | exon | 12776026 | 12776194 | 12776026 | ID=MS.gene08778.t1.exon2;Parent=MS.gene08778.t1 |
| chr4.2 | CDS | 12776026 | 12776194 | 12776026 | ID=cds.MS.gene08778.t1;Parent=MS.gene08778.t1 |
| chr4.2 | exon | 12775661 | 12775941 | 12775661 | ID=MS.gene08778.t1.exon3;Parent=MS.gene08778.t1 |
| chr4.2 | CDS | 12775661 | 12775941 | 12775661 | ID=cds.MS.gene08778.t1;Parent=MS.gene08778.t1 |
| chr4.2 | exon | 12775203 | 12775498 | 12775203 | ID=MS.gene08778.t1.exon4;Parent=MS.gene08778.t1 |
| chr4.2 | CDS | 12775203 | 12775498 | 12775203 | ID=cds.MS.gene08778.t1;Parent=MS.gene08778.t1 |
| Gene Sequence |
| Protein sequence |
