Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27003.t1 | XP_003590123.1 | 100 | 239 | 0 | 0 | 1 | 239 | 1 | 239 | 1.40E-126 | 462.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27003.t1 | Q9FJA6 | 88.8 | 233 | 26 | 0 | 1 | 233 | 1 | 233 | 1.3e-112 | 407.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27003.t1 | B7FH64 | 100.0 | 239 | 0 | 0 | 1 | 239 | 1 | 239 | 1.0e-126 | 462.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049387 | MS.gene27003 | 0.832038 | 1.19E-55 | -1.69E-46 |
| MS.gene050134 | MS.gene27003 | 0.858419 | 8.34E-63 | -1.69E-46 |
| MS.gene050252 | MS.gene27003 | 0.801853 | 7.40E-49 | -1.69E-46 |
| MS.gene052664 | MS.gene27003 | 0.855695 | 5.31E-62 | -1.69E-46 |
| MS.gene052666 | MS.gene27003 | 0.84481 | 6.00E-59 | -1.69E-46 |
| MS.gene053224 | MS.gene27003 | 0.81815 | 2.28E-52 | -1.69E-46 |
| MS.gene057272 | MS.gene27003 | 0.831053 | 2.08E-55 | -1.69E-46 |
| MS.gene057641 | MS.gene27003 | 0.843476 | 1.37E-58 | -1.69E-46 |
| MS.gene057643 | MS.gene27003 | 0.87578 | 2.35E-68 | -1.69E-46 |
| MS.gene059340 | MS.gene27003 | 0.854509 | 1.17E-61 | -1.69E-46 |
| MS.gene059878 | MS.gene27003 | 0.816467 | 5.45E-52 | -1.69E-46 |
| MS.gene059880 | MS.gene27003 | 0.814803 | 1.28E-51 | -1.69E-46 |
| MS.gene060483 | MS.gene27003 | 0.833123 | 6.39E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene27003 | MS.gene96480 | PPI |
| MS.gene27003 | MS.gene026677 | PPI |
| MS.gene63685 | MS.gene27003 | PPI |
| MS.gene27003 | MS.gene27265 | PPI |
| MS.gene41083 | MS.gene27003 | PPI |
| MS.gene27003 | MS.gene90723 | PPI |
| MS.gene27003 | MS.gene053439 | PPI |
| MS.gene27003 | MS.gene98229 | PPI |
| MS.gene27003 | MS.gene055646 | PPI |
| MS.gene27003 | MS.gene061619 | PPI |
| MS.gene41081 | MS.gene27003 | PPI |
| MS.gene27003 | MS.gene93153 | PPI |
| MS.gene27003 | MS.gene98228 | PPI |
| MS.gene27003 | MS.gene24232 | PPI |
| MS.gene034801 | MS.gene27003 | PPI |
| MS.gene27003 | MS.gene08126 | PPI |
| MS.gene27003 | MS.gene31853 | PPI |
| MS.gene20081 | MS.gene27003 | PPI |
| MS.gene055644 | MS.gene27003 | PPI |
| MS.gene27003 | MS.gene063717 | PPI |
| MS.gene36891 | MS.gene27003 | PPI |
| MS.gene073885 | MS.gene27003 | PPI |
| MS.gene27003 | MS.gene33653 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27003.t1 | MTR_1g044660 | 100.000 | 239 | 0 | 0 | 1 | 239 | 1 | 239 | 3.63e-177 | 486 |
| MS.gene27003.t1 | MTR_1g023000 | 99.163 | 239 | 2 | 0 | 1 | 239 | 1 | 239 | 2.37e-176 | 484 |
| MS.gene27003.t1 | MTR_6g052140 | 94.538 | 238 | 8 | 1 | 1 | 238 | 1 | 233 | 6.51e-166 | 457 |
| MS.gene27003.t1 | MTR_6g052220 | 94.538 | 238 | 8 | 1 | 1 | 238 | 1 | 233 | 6.51e-166 | 457 |
| MS.gene27003.t1 | MTR_1g111450 | 86.383 | 235 | 31 | 1 | 1 | 234 | 1 | 235 | 5.09e-150 | 417 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27003.t1 | AT5G35530 | 88.841 | 233 | 26 | 0 | 1 | 233 | 1 | 233 | 2.03e-153 | 426 |
| MS.gene27003.t1 | AT2G31610 | 88.987 | 227 | 25 | 0 | 1 | 227 | 1 | 227 | 4.40e-149 | 416 |
| MS.gene27003.t1 | AT3G53870 | 92.166 | 217 | 17 | 0 | 1 | 217 | 1 | 217 | 1.47e-148 | 414 |
Find 66 sgRNAs with CRISPR-Local
Find 83 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAGGGTGTTCTTGGTATTA+AGG | 0.259759 | 1.3:+2304899 | MS.gene27003:intron |
| TTAGGACCTTGCTTTCCTTT+AGG | 0.279269 | 1.3:-2304945 | None:intergenic |
| GCTATTCCGGTGTTGAGGTT+AGG | 0.315077 | 1.3:+2304278 | MS.gene27003:CDS |
| TCCCCTGTTGTTGACCTTCT+CGG | 0.322481 | 1.3:-2304536 | None:intergenic |
| CTTGCTGAAGATGGCTATTC+CGG | 0.326131 | 1.3:+2304265 | MS.gene27003:CDS |
| CGGTGTGTTGAGGTTTGTTA+TGG | 0.332791 | 1.3:+2304633 | MS.gene27003:CDS |
| AAACCTCAACACACCGTAAC+AGG | 0.355716 | 1.3:-2304626 | None:intergenic |
| CTCATCTGGCCAACCTGTTA+AGG | 0.357556 | 1.3:+2304747 | MS.gene27003:CDS |
| ATAGCCATCCTTGAACTTCA+TGG | 0.360301 | 1.3:-2304719 | None:intergenic |
| ATGTACTCTTCCTCCTCCTT+TGG | 0.368666 | 1.3:-2305002 | None:intergenic |
| CTATTCCGGTGTTGAGGTTA+GGG | 0.371348 | 1.3:+2304279 | MS.gene27003:CDS |
| GGATGTGAGGTTATTGTTAG+TGG | 0.386156 | 1.3:+2304670 | MS.gene27003:CDS |
| GAGTCAATGTAATCCTTAAC+AGG | 0.402767 | 1.3:-2304760 | None:intergenic |
| CTCCTCCTTTGGAGTGTGAA+TGG | 0.408543 | 1.3:-2304991 | None:intergenic |
| ATCCTTGAACTTCATGGACT+TGG | 0.424680 | 1.3:-2304713 | None:intergenic |
| GTGTGAATGGTAACAATATC+AGG | 0.428011 | 1.3:-2304978 | None:intergenic |
| AGGTGAAGATTATGCTTGAC+TGG | 0.432560 | 1.3:+2304919 | MS.gene27003:CDS |
| ACCAGAGAGCTTGCTGAAGA+TGG | 0.438488 | 1.3:+2304256 | MS.gene27003:CDS |
| ACTCGTACCCAAGCTGTTCT+CGG | 0.438888 | 1.3:+2304337 | MS.gene27003:CDS |
| ATGCCGAGAAGGTCAACAAC+AGG | 0.451722 | 1.3:+2304533 | MS.gene27003:CDS |
| GATGGCTATATGATCTCATC+TGG | 0.452022 | 1.3:+2304733 | MS.gene27003:CDS |
| TCTCTTCGTTACAAGCTTCT+CGG | 0.453319 | 1.3:+2304583 | MS.gene27003:CDS |
| TATGATTAGGTGAGAAGGGT+AGG | 0.454324 | 1.3:+2304443 | MS.gene27003:intron |
| CAAACAACAGGGACTGGGAC+AGG | 0.457728 | 1.3:-2305062 | None:intergenic |
| AGGAGGAGGAAGAGTACATC+AGG | 0.461009 | 1.3:+2305006 | MS.gene27003:CDS |
| TTGAGGTTTGTTATGGAAAG+TGG | 0.475116 | 1.3:+2304640 | MS.gene27003:CDS |
| TATAGTTCAACACTGTTCTC+AGG | 0.488325 | 1.3:-2304511 | None:intergenic |
| AATTTATGATTAGGTGAGAA+GGG | 0.490999 | 1.3:+2304439 | MS.gene27003:intron |
| GCCATCTTCAGCAAGCTCTC+TGG | 0.491889 | 1.3:-2304257 | None:intergenic |
| AGCCAAGTCCATGAAGTTCA+AGG | 0.492737 | 1.3:+2304711 | MS.gene27003:CDS |
| TGTTATGGAAAGTGGTGCTA+AGG | 0.499768 | 1.3:+2304648 | MS.gene27003:CDS |
| TAGACATGTTCTTCTCAGAC+AGG | 0.500852 | 1.3:+2304789 | MS.gene27003:CDS |
| TTGTTGCAGTTCGTCGCTGA+CGG | 0.501712 | 1.3:+2304202 | MS.gene27003:intron |
| TGACCTCAGTAGTCCAGAAA+AGG | 0.517945 | 1.3:+2304479 | MS.gene27003:CDS |
| CTACGAACCGAGAACAGCTT+GGG | 0.520711 | 1.3:-2304344 | None:intergenic |
| GATGATGATCTCAGTGCGCA+TGG | 0.527229 | 1.3:-2304308 | None:intergenic |
| TCATTTGCAACAACAGCAGC+AGG | 0.528096 | 1.3:-2305029 | None:intergenic |
| TTTCTTCGCTGAATTGAATG+AGG | 0.530015 | 1.3:+2304228 | MS.gene27003:CDS |
| AATGGTAACAATATCAGGTA+GGG | 0.532486 | 1.3:-2304973 | None:intergenic |
| GATTAGGTGAGAAGGGTAGG+AGG | 0.538783 | 1.3:+2304446 | MS.gene27003:intron |
| ACTACGAACCGAGAACAGCT+TGG | 0.552773 | 1.3:-2304345 | None:intergenic |
| GCTGTTCGCAGAGCCTGTTA+CGG | 0.553152 | 1.3:+2304613 | MS.gene27003:CDS |
| GAGCCTGTTACGGTGTGTTG+AGG | 0.556363 | 1.3:+2304623 | MS.gene27003:CDS |
| ATGCTTGACTGGGATCCTAA+AGG | 0.556783 | 1.3:+2304930 | MS.gene27003:CDS |
| TGTTGTTGCAAATGATATTG+AGG | 0.562213 | 1.3:+2305037 | MS.gene27003:CDS |
| GAATTTATGATTAGGTGAGA+AGG | 0.566300 | 1.3:+2304438 | MS.gene27003:intron |
| TTTCTCAAACAACAGGGACT+GGG | 0.568525 | 1.3:-2305067 | None:intergenic |
| GTTATGGAAAGTGGTGCTAA+GGG | 0.582081 | 1.3:+2304649 | MS.gene27003:CDS |
| GAATGGTAACAATATCAGGT+AGG | 0.585408 | 1.3:-2304974 | None:intergenic |
| AGATGGCTATTCCGGTGTTG+AGG | 0.587442 | 1.3:+2304273 | MS.gene27003:CDS |
| CAATGTAATCCTTAACAGGT+TGG | 0.596885 | 1.3:-2304756 | None:intergenic |
| TGGGATCCTAAAGGAAAGCA+AGG | 0.601952 | 1.3:+2304939 | MS.gene27003:CDS |
| GGTGAAGATTATGCTTGACT+GGG | 0.603451 | 1.3:+2304920 | MS.gene27003:CDS |
| AAACAACAGGGACTGGGACA+GGG | 0.607283 | 1.3:-2305061 | None:intergenic |
| TGCCGAGAAGGTCAACAACA+GGG | 0.610201 | 1.3:+2304534 | MS.gene27003:CDS |
| TACCATTCACACTCCAAAGG+AGG | 0.618529 | 1.3:+2304989 | MS.gene27003:CDS |
| CATTCACACTCCAAAGGAGG+AGG | 0.623248 | 1.3:+2304992 | MS.gene27003:CDS |
| ATGGTAACAATATCAGGTAG+GGG | 0.623679 | 1.3:-2304972 | None:intergenic |
| TGTTACCATTCACACTCCAA+AGG | 0.627045 | 1.3:+2304986 | MS.gene27003:CDS |
| TGTTGAACTATATGCCGAGA+AGG | 0.629146 | 1.3:+2304522 | MS.gene27003:CDS |
| AAGTCCATGAAGTTCAAGGA+TGG | 0.640546 | 1.3:+2304715 | MS.gene27003:CDS |
| ATGATGATCTCAGTGCGCAT+GGG | 0.667262 | 1.3:-2304307 | None:intergenic |
| AAGTGGTGCTAAGGGATGTG+AGG | 0.670962 | 1.3:+2304657 | MS.gene27003:CDS |
| CTTCGTTACAAGCTTCTCGG+AGG | 0.671532 | 1.3:+2304586 | MS.gene27003:CDS |
| GCCGAGAAGGTCAACAACAG+GGG | 0.676600 | 1.3:+2304535 | MS.gene27003:CDS |
| AGTAACCCTAACCTCAACAC+CGG | 0.681090 | 1.3:-2304284 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTTTTATATGAATTTAAA+TGG | + | chr1.3:2304400-2304419 | MS.gene27003:intron | 10.0% |
| !! | TGATTTATGAATTTATGATT+AGG | + | chr1.3:2304430-2304449 | MS.gene27003:intron | 15.0% |
| !!! | ATTATTACCTTTATTTTGTA+GGG | + | chr1.3:2304882-2304901 | MS.gene27003:intron | 15.0% |
| !!! | GATTATTACCTTTATTTTGT+AGG | + | chr1.3:2304881-2304900 | MS.gene27003:intron | 20.0% |
| ! | AATTTATGATTAGGTGAGAA+GGG | + | chr1.3:2304439-2304458 | MS.gene27003:intron | 25.0% |
| AAACCAACAAGGTTGTTATA+GGG | - | chr1.3:2304827-2304846 | None:intergenic | 30.0% | |
| AAGAACACCCTACAAAATAA+AGG | - | chr1.3:2304892-2304911 | None:intergenic | 30.0% | |
| AATAACAAACCAAACCAACA+AGG | - | chr1.3:2304838-2304857 | None:intergenic | 30.0% | |
| AATGGTAACAATATCAGGTA+GGG | - | chr1.3:2304976-2304995 | None:intergenic | 30.0% | |
| CACTACTAATAGAGATGAAT+TGG | - | chr1.3:2304141-2304160 | None:intergenic | 30.0% | |
| GAATTTATGATTAGGTGAGA+AGG | + | chr1.3:2304438-2304457 | MS.gene27003:intron | 30.0% | |
| TGTTGTTGCAAATGATATTG+AGG | + | chr1.3:2305037-2305056 | MS.gene27003:CDS | 30.0% | |
| !!! | TTTATTTTGTAGGGTGTTCT+TGG | + | chr1.3:2304891-2304910 | MS.gene27003:intron | 30.0% |
| ATGGTAACAATATCAGGTAG+GGG | - | chr1.3:2304975-2304994 | None:intergenic | 35.0% | |
| CAAACCAACAAGGTTGTTAT+AGG | - | chr1.3:2304828-2304847 | None:intergenic | 35.0% | |
| CAATGTAATCCTTAACAGGT+TGG | - | chr1.3:2304759-2304778 | None:intergenic | 35.0% | |
| GAATGGTAACAATATCAGGT+AGG | - | chr1.3:2304977-2304996 | None:intergenic | 35.0% | |
| GAGTCAATGTAATCCTTAAC+AGG | - | chr1.3:2304763-2304782 | None:intergenic | 35.0% | |
| GTGTGAATGGTAACAATATC+AGG | - | chr1.3:2304981-2305000 | None:intergenic | 35.0% | |
| TATAGTTCAACACTGTTCTC+AGG | - | chr1.3:2304514-2304533 | None:intergenic | 35.0% | |
| TTACCCTATAACAACCTTGT+TGG | + | chr1.3:2304821-2304840 | MS.gene27003:intron | 35.0% | |
| TTTCTTCGCTGAATTGAATG+AGG | + | chr1.3:2304228-2304247 | MS.gene27003:CDS | 35.0% | |
| ! | CAGGAAACTTAAACCTTTTC+TGG | - | chr1.3:2304495-2304514 | None:intergenic | 35.0% |
| ! | CTATAACAACCTTGTTGGTT+TGG | + | chr1.3:2304826-2304845 | MS.gene27003:intron | 35.0% |
| !! | TTGAGGTTTGTTATGGAAAG+TGG | + | chr1.3:2304640-2304659 | MS.gene27003:CDS | 35.0% |
| !!! | CTTTCGCTTTTTGCTCATTT+GGG | - | chr1.3:2304090-2304109 | None:intergenic | 35.0% |
| AAGTCCATGAAGTTCAAGGA+TGG | + | chr1.3:2304715-2304734 | MS.gene27003:CDS | 40.0% | |
| AGGTGAAGATTATGCTTGAC+TGG | + | chr1.3:2304919-2304938 | MS.gene27003:CDS | 40.0% | |
| ATAGCCATCCTTGAACTTCA+TGG | - | chr1.3:2304722-2304741 | None:intergenic | 40.0% | |
| ATCCTTGAACTTCATGGACT+TGG | - | chr1.3:2304716-2304735 | None:intergenic | 40.0% | |
| CCAAATGAGCAAAAAGCGAA+AGG | + | chr1.3:2304088-2304107 | MS.gene27003:CDS | 40.0% | |
| GATGGCTATATGATCTCATC+TGG | + | chr1.3:2304733-2304752 | MS.gene27003:CDS | 40.0% | |
| GGATGTGAGGTTATTGTTAG+TGG | + | chr1.3:2304670-2304689 | MS.gene27003:CDS | 40.0% | |
| GGTGAAGATTATGCTTGACT+GGG | + | chr1.3:2304920-2304939 | MS.gene27003:CDS | 40.0% | |
| TAGACATGTTCTTCTCAGAC+AGG | + | chr1.3:2304789-2304808 | MS.gene27003:CDS | 40.0% | |
| TATGATTAGGTGAGAAGGGT+AGG | + | chr1.3:2304443-2304462 | MS.gene27003:intron | 40.0% | |
| TCTCTTCGTTACAAGCTTCT+CGG | + | chr1.3:2304583-2304602 | MS.gene27003:CDS | 40.0% | |
| TGTTACCATTCACACTCCAA+AGG | + | chr1.3:2304986-2305005 | MS.gene27003:CDS | 40.0% | |
| TGTTGAACTATATGCCGAGA+AGG | + | chr1.3:2304522-2304541 | MS.gene27003:CDS | 40.0% | |
| TTAGGACCTTGCTTTCCTTT+AGG | - | chr1.3:2304948-2304967 | None:intergenic | 40.0% | |
| ! | AAACCTTTTCTGGACTACTG+AGG | - | chr1.3:2304485-2304504 | None:intergenic | 40.0% |
| ! | ATATCAGGTAGGGGAGTTTT+AGG | - | chr1.3:2304966-2304985 | None:intergenic | 40.0% |
| ! | GTAGGGTGTTCTTGGTATTA+AGG | + | chr1.3:2304899-2304918 | MS.gene27003:intron | 40.0% |
| ! | GTTATGGAAAGTGGTGCTAA+GGG | + | chr1.3:2304649-2304668 | MS.gene27003:CDS | 40.0% |
| ! | TGTTATGGAAAGTGGTGCTA+AGG | + | chr1.3:2304648-2304667 | MS.gene27003:CDS | 40.0% |
| !!! | CCTTTCGCTTTTTGCTCATT+TGG | - | chr1.3:2304091-2304110 | None:intergenic | 40.0% |
| AAACCTCAACACACCGTAAC+AGG | - | chr1.3:2304629-2304648 | None:intergenic | 45.0% | |
| AGCCAAGTCCATGAAGTTCA+AGG | + | chr1.3:2304711-2304730 | MS.gene27003:CDS | 45.0% | |
| AGTAACCCTAACCTCAACAC+CGG | - | chr1.3:2304287-2304306 | None:intergenic | 45.0% | |
| ATGATGATCTCAGTGCGCAT+GGG | - | chr1.3:2304310-2304329 | None:intergenic | 45.0% | |
| ATGCTTGACTGGGATCCTAA+AGG | + | chr1.3:2304930-2304949 | MS.gene27003:CDS | 45.0% | |
| ATGTACTCTTCCTCCTCCTT+TGG | - | chr1.3:2305005-2305024 | None:intergenic | 45.0% | |
| CTTGCTGAAGATGGCTATTC+CGG | + | chr1.3:2304265-2304284 | MS.gene27003:CDS | 45.0% | |
| TACCATTCACACTCCAAAGG+AGG | + | chr1.3:2304989-2305008 | MS.gene27003:CDS | 45.0% | |
| TCATTTGCAACAACAGCAGC+AGG | - | chr1.3:2305032-2305051 | None:intergenic | 45.0% | |
| TGACCTCAGTAGTCCAGAAA+AGG | + | chr1.3:2304479-2304498 | MS.gene27003:CDS | 45.0% | |
| TGGGATCCTAAAGGAAAGCA+AGG | + | chr1.3:2304939-2304958 | MS.gene27003:CDS | 45.0% | |
| ! | CTATTCCGGTGTTGAGGTTA+GGG | + | chr1.3:2304279-2304298 | MS.gene27003:CDS | 45.0% |
| !! | CGGTGTGTTGAGGTTTGTTA+TGG | + | chr1.3:2304633-2304652 | MS.gene27003:CDS | 45.0% |
| AAACAACAGGGACTGGGACA+GGG | - | chr1.3:2305064-2305083 | None:intergenic | 50.0% | |
| ACTACGAACCGAGAACAGCT+TGG | - | chr1.3:2304348-2304367 | None:intergenic | 50.0% | |
| ACTCGTACCCAAGCTGTTCT+CGG | + | chr1.3:2304337-2304356 | MS.gene27003:CDS | 50.0% | |
| ATGCCGAGAAGGTCAACAAC+AGG | + | chr1.3:2304533-2304552 | MS.gene27003:CDS | 50.0% | |
| CATTCACACTCCAAAGGAGG+AGG | + | chr1.3:2304992-2305011 | MS.gene27003:CDS | 50.0% | |
| CTACGAACCGAGAACAGCTT+GGG | - | chr1.3:2304347-2304366 | None:intergenic | 50.0% | |
| CTCATCTGGCCAACCTGTTA+AGG | + | chr1.3:2304747-2304766 | MS.gene27003:CDS | 50.0% | |
| CTTCGTTACAAGCTTCTCGG+AGG | + | chr1.3:2304586-2304605 | MS.gene27003:CDS | 50.0% | |
| GATGATGATCTCAGTGCGCA+TGG | - | chr1.3:2304311-2304330 | None:intergenic | 50.0% | |
| GATTAGGTGAGAAGGGTAGG+AGG | + | chr1.3:2304446-2304465 | MS.gene27003:intron | 50.0% | |
| TCCCCTGTTGTTGACCTTCT+CGG | - | chr1.3:2304539-2304558 | None:intergenic | 50.0% | |
| TGCCGAGAAGGTCAACAACA+GGG | + | chr1.3:2304534-2304553 | MS.gene27003:CDS | 50.0% | |
| TTGTTGCAGTTCGTCGCTGA+CGG | + | chr1.3:2304202-2304221 | MS.gene27003:intron | 50.0% | |
| ! | AAGTGGTGCTAAGGGATGTG+AGG | + | chr1.3:2304657-2304676 | MS.gene27003:CDS | 50.0% |
| ! | AGATGGCTATTCCGGTGTTG+AGG | + | chr1.3:2304273-2304292 | MS.gene27003:CDS | 50.0% |
| ! | AGGAGGAGGAAGAGTACATC+AGG | + | chr1.3:2305006-2305025 | MS.gene27003:CDS | 50.0% |
| ! | GCTATTCCGGTGTTGAGGTT+AGG | + | chr1.3:2304278-2304297 | MS.gene27003:CDS | 50.0% |
| !! | ACCAGAGAGCTTGCTGAAGA+TGG | + | chr1.3:2304256-2304275 | MS.gene27003:CDS | 50.0% |
| !! | CTCCTCCTTTGGAGTGTGAA+TGG | - | chr1.3:2304994-2305013 | None:intergenic | 50.0% |
| CAAACAACAGGGACTGGGAC+AGG | - | chr1.3:2305065-2305084 | None:intergenic | 55.0% | |
| GAGCCTGTTACGGTGTGTTG+AGG | + | chr1.3:2304623-2304642 | MS.gene27003:CDS | 55.0% | |
| GCCATCTTCAGCAAGCTCTC+TGG | - | chr1.3:2304260-2304279 | None:intergenic | 55.0% | |
| GCCGAGAAGGTCAACAACAG+GGG | + | chr1.3:2304535-2304554 | MS.gene27003:CDS | 55.0% | |
| GCTGTTCGCAGAGCCTGTTA+CGG | + | chr1.3:2304613-2304632 | MS.gene27003:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 2304080 | 2305085 | 2304080 | ID=MS.gene27003 |
| chr1.3 | mRNA | 2304080 | 2305085 | 2304080 | ID=MS.gene27003.t1;Parent=MS.gene27003 |
| chr1.3 | exon | 2304080 | 2304109 | 2304080 | ID=MS.gene27003.t1.exon1;Parent=MS.gene27003.t1 |
| chr1.3 | CDS | 2304080 | 2304109 | 2304080 | ID=cds.MS.gene27003.t1;Parent=MS.gene27003.t1 |
| chr1.3 | exon | 2304211 | 2304358 | 2304211 | ID=MS.gene27003.t1.exon2;Parent=MS.gene27003.t1 |
| chr1.3 | CDS | 2304211 | 2304358 | 2304211 | ID=cds.MS.gene27003.t1;Parent=MS.gene27003.t1 |
| chr1.3 | exon | 2304452 | 2304810 | 2304452 | ID=MS.gene27003.t1.exon3;Parent=MS.gene27003.t1 |
| chr1.3 | CDS | 2304452 | 2304810 | 2304452 | ID=cds.MS.gene27003.t1;Parent=MS.gene27003.t1 |
| chr1.3 | exon | 2304903 | 2305085 | 2304903 | ID=MS.gene27003.t1.exon4;Parent=MS.gene27003.t1 |
| chr1.3 | CDS | 2304903 | 2305085 | 2304903 | ID=cds.MS.gene27003.t1;Parent=MS.gene27003.t1 |
| Gene Sequence |
| Protein sequence |
