Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063717.t1 | XP_003590123.1 | 100 | 239 | 0 | 0 | 1 | 239 | 1 | 239 | 1.40E-126 | 462.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063717.t1 | Q9FJA6 | 88.8 | 233 | 26 | 0 | 1 | 233 | 1 | 233 | 1.3e-112 | 407.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063717.t1 | B7FH64 | 100.0 | 239 | 0 | 0 | 1 | 239 | 1 | 239 | 1.0e-126 | 462.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049387 | MS.gene063717 | 0.800843 | 1.19E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene063717 | MS.gene08126 | PPI |
| MS.gene034801 | MS.gene063717 | PPI |
| MS.gene063717 | MS.gene053439 | PPI |
| MS.gene063717 | MS.gene98229 | PPI |
| MS.gene055644 | MS.gene063717 | PPI |
| MS.gene31853 | MS.gene063717 | PPI |
| MS.gene073885 | MS.gene063717 | PPI |
| MS.gene63685 | MS.gene063717 | PPI |
| MS.gene055646 | MS.gene063717 | PPI |
| MS.gene90723 | MS.gene063717 | PPI |
| MS.gene026677 | MS.gene063717 | PPI |
| MS.gene061619 | MS.gene063717 | PPI |
| MS.gene063717 | MS.gene96480 | PPI |
| MS.gene41083 | MS.gene063717 | PPI |
| MS.gene27265 | MS.gene063717 | PPI |
| MS.gene41081 | MS.gene063717 | PPI |
| MS.gene27003 | MS.gene063717 | PPI |
| MS.gene93153 | MS.gene063717 | PPI |
| MS.gene33653 | MS.gene063717 | PPI |
| MS.gene20081 | MS.gene063717 | PPI |
| MS.gene24232 | MS.gene063717 | PPI |
| MS.gene36891 | MS.gene063717 | PPI |
| MS.gene063717 | MS.gene98228 | PPI |
| MS.gene053439 | MS.gene063717 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063717.t1 | MTR_1g044660 | 100.000 | 239 | 0 | 0 | 1 | 239 | 1 | 239 | 3.63e-177 | 486 |
| MS.gene063717.t1 | MTR_1g023000 | 99.163 | 239 | 2 | 0 | 1 | 239 | 1 | 239 | 2.37e-176 | 484 |
| MS.gene063717.t1 | MTR_6g052140 | 94.538 | 238 | 8 | 1 | 1 | 238 | 1 | 233 | 6.51e-166 | 457 |
| MS.gene063717.t1 | MTR_6g052220 | 94.538 | 238 | 8 | 1 | 1 | 238 | 1 | 233 | 6.51e-166 | 457 |
| MS.gene063717.t1 | MTR_1g111450 | 86.383 | 235 | 31 | 1 | 1 | 234 | 1 | 235 | 5.09e-150 | 417 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063717.t1 | AT5G35530 | 88.841 | 233 | 26 | 0 | 1 | 233 | 1 | 233 | 2.03e-153 | 426 |
| MS.gene063717.t1 | AT2G31610 | 88.987 | 227 | 25 | 0 | 1 | 227 | 1 | 227 | 4.40e-149 | 416 |
| MS.gene063717.t1 | AT3G53870 | 92.166 | 217 | 17 | 0 | 1 | 217 | 1 | 217 | 1.47e-148 | 414 |
Find 79 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTTGAACTTCATGGATT+TGG | 0.206773 | 1.1:+27897600 | None:intergenic |
| ATATCCATCTTTGAACTTCA+TGG | 0.225934 | 1.1:+27897594 | None:intergenic |
| TTAGGGCCCTGCTTTCCTTT+AGG | 0.246468 | 1.1:+27897343 | None:intergenic |
| GATGGATATATGATTTCTTC+TGG | 0.289581 | 1.1:-27897580 | MS.gene063717:CDS |
| GTTATTCCGGTGTTGAGGTT+AGG | 0.312781 | 1.1:-27899512 | MS.gene063717:CDS |
| ACTTCATGGATTTGGCTCTC+TGG | 0.314330 | 1.1:+27897608 | None:intergenic |
| GTGTGAATGGTGACAATATC+AGG | 0.336609 | 1.1:+27897310 | None:intergenic |
| CTTCATGGATTTGGCTCTCT+GGG | 0.348818 | 1.1:+27897609 | None:intergenic |
| CTCTTCCTTTGGAGTGTGAA+TGG | 0.357277 | 1.1:+27897297 | None:intergenic |
| ATGTACTCCTCCTCTTCCTT+TGG | 0.368386 | 1.1:+27897286 | None:intergenic |
| CAAACAACGGGGACTGGGAC+AGG | 0.374639 | 1.1:+27897226 | None:intergenic |
| CTTGCTGAGGATGGTTATTC+CGG | 0.378503 | 1.1:-27899525 | MS.gene063717:CDS |
| ATGATAAGCTAACCTGTCTA+AGG | 0.386367 | 1.1:+27897512 | None:intergenic |
| TTTGTGTTGTAGGGTGTTCT+CGG | 0.388366 | 1.1:-27897397 | MS.gene063717:intron |
| TTATTCCGGTGTTGAGGTTA+GGG | 0.409497 | 1.1:-27899511 | MS.gene063717:CDS |
| GGGACTTTGTGCCATTGCTC+AGG | 0.413038 | 1.1:-27898861 | MS.gene063717:CDS |
| ACGCTGAGAAGGTCAACAAC+AGG | 0.438336 | 1.1:-27898883 | MS.gene063717:CDS |
| CATCAGGCCTGCTGCTGTTG+TGG | 0.461102 | 1.1:-27897266 | MS.gene063717:CDS |
| TGCGCACTGAGATCATCATC+AGG | 0.467489 | 1.1:-27899479 | MS.gene063717:CDS |
| AGGAAGAGGAGGAGTACATC+AGG | 0.468833 | 1.1:-27897282 | MS.gene063717:CDS |
| TAAAGCTCAACGCTGTTCTC+AGG | 0.473385 | 1.1:+27898905 | None:intergenic |
| ATTTCTTTCAGGGCCTGCTA+TGG | 0.473754 | 1.1:-27897787 | MS.gene063717:intron |
| AGGTTAAGATCATGCTCGAC+TGG | 0.485245 | 1.1:-27897369 | MS.gene063717:CDS |
| GATGTATAGGTGAGAAGGGA+AGG | 0.487674 | 1.1:-27898973 | MS.gene063717:intron |
| ACTCGTACCCAAGCTGTTCT+CGG | 0.490767 | 1.1:-27899453 | MS.gene063717:intron |
| TTGTGATGTATAGGTGAGAA+GGG | 0.493840 | 1.1:-27898977 | MS.gene063717:intron |
| TCGGAGGTCTTGCTGTTCGC+AGG | 0.494676 | 1.1:-27898814 | MS.gene063717:intron |
| CTGGGATCCTAAAGGAAAGC+AGG | 0.500197 | 1.1:-27897350 | MS.gene063717:CDS |
| GACAGGGACCTCAATATCAT+TGG | 0.510522 | 1.1:+27897243 | None:intergenic |
| GAGACATGTGCTCCTTAGAC+AGG | 0.512478 | 1.1:-27897524 | MS.gene063717:intron |
| GTAGGGTGTTCTCGGTATCA+AGG | 0.512546 | 1.1:-27897389 | MS.gene063717:intron |
| TCATTGGCCACAACAGCAGC+AGG | 0.512718 | 1.1:+27897259 | None:intergenic |
| TGATGATCTCAGTGCGCATA+GGG | 0.514210 | 1.1:+27899484 | None:intergenic |
| AAACCTCAACACACCATAGC+AGG | 0.520448 | 1.1:+27897774 | None:intergenic |
| ACAAGAGAGCTTGCTGAGGA+TGG | 0.521794 | 1.1:-27899534 | MS.gene063717:CDS |
| TTTGTGATGTATAGGTGAGA+AGG | 0.522072 | 1.1:-27898978 | MS.gene063717:intron |
| TTCTTCTGGACAACCAGTCA+AGG | 0.524528 | 1.1:-27897566 | MS.gene063717:CDS |
| TATTGTCAGTGGAAAATTGA+GGG | 0.525395 | 1.1:-27897632 | MS.gene063717:CDS |
| TGAGTTACCGAGAACAGCTT+GGG | 0.525457 | 1.1:+27899446 | None:intergenic |
| CACGTGCAGGTTATTGTCAG+TGG | 0.527776 | 1.1:-27897643 | MS.gene063717:intron |
| AAATCCATGAAGTTCAAAGA+TGG | 0.529947 | 1.1:-27897598 | MS.gene063717:CDS |
| TTTCTTCGCTGAATTGAATG+AGG | 0.530015 | 1.1:-27899562 | MS.gene063717:CDS |
| TGACCTCAGTTGTGCAGAAG+AGG | 0.532735 | 1.1:-27898937 | MS.gene063717:CDS |
| ATGAGTTACCGAGAACAGCT+TGG | 0.534831 | 1.1:+27899445 | None:intergenic |
| TTGAGGTTTGTCATGGAAAG+TGG | 0.550123 | 1.1:-27897760 | MS.gene063717:CDS |
| CGCTGAGAAGGTCAACAACA+GGG | 0.550500 | 1.1:-27898882 | MS.gene063717:CDS |
| GAGTCAATGTAGTCCTTGAC+TGG | 0.552164 | 1.1:+27897553 | None:intergenic |
| CGTTGAGCTTTACGCTGAGA+AGG | 0.553768 | 1.1:-27898894 | MS.gene063717:CDS |
| TTGTTGCAGTTCGTCGCTGA+CGG | 0.560423 | 1.1:-27899588 | MS.gene063717:intron |
| ATGATGATCTCAGTGCGCAT+AGG | 0.560609 | 1.1:+27899483 | None:intergenic |
| GGATGGTTATTCCGGTGTTG+AGG | 0.564051 | 1.1:-27899517 | MS.gene063717:CDS |
| AAAACGAACCTCACATCCCT+TGG | 0.567343 | 1.1:+27897735 | None:intergenic |
| TGTCATGGAAAGTGGTGCCA+AGG | 0.570166 | 1.1:-27897752 | MS.gene063717:CDS |
| GGGCCTGCTATGGTGTGTTG+AGG | 0.572929 | 1.1:-27897777 | MS.gene063717:CDS |
| AAACAACGGGGACTGGGACA+GGG | 0.577925 | 1.1:+27897227 | None:intergenic |
| CATTCACACTCCAAAGGAAG+AGG | 0.584530 | 1.1:-27897296 | MS.gene063717:CDS |
| TGGTGTGTTGAGGTTTGTCA+TGG | 0.586163 | 1.1:-27897767 | MS.gene063717:CDS |
| TTATTGTCAGTGGAAAATTG+AGG | 0.586639 | 1.1:-27897633 | MS.gene063717:CDS |
| GGTTAAGATCATGCTCGACT+GGG | 0.595146 | 1.1:-27897368 | MS.gene063717:CDS |
| TCTCTTCGCTACAAGCTGCT+CGG | 0.596248 | 1.1:-27898833 | MS.gene063717:CDS |
| TGTTGTGGCCAATGATATTG+AGG | 0.598745 | 1.1:-27897251 | MS.gene063717:CDS |
| AATGGTGACAATATCAGGGA+GGG | 0.600476 | 1.1:+27897315 | None:intergenic |
| ATGCTCGACTGGGATCCTAA+AGG | 0.600547 | 1.1:-27897358 | MS.gene063717:CDS |
| TGGGATCCTAAAGGAAAGCA+GGG | 0.616276 | 1.1:-27897349 | MS.gene063717:CDS |
| AAGAGACTCAGCCTGAGCAA+TGG | 0.625272 | 1.1:+27898850 | None:intergenic |
| TCACACTCCAAAGGAAGAGG+AGG | 0.628998 | 1.1:-27897293 | MS.gene063717:CDS |
| GTCATGGAAAGTGGTGCCAA+GGG | 0.643243 | 1.1:-27897751 | MS.gene063717:CDS |
| TGTGAATGGTGACAATATCA+GGG | 0.645355 | 1.1:+27897311 | None:intergenic |
| ATGGTGACAATATCAGGGAG+GGG | 0.658335 | 1.1:+27897316 | None:intergenic |
| TGTCACCATTCACACTCCAA+AGG | 0.659904 | 1.1:-27897302 | MS.gene063717:CDS |
| TTTGACAAGAGAGCTTGCTG+AGG | 0.666945 | 1.1:-27899538 | MS.gene063717:CDS |
| CTTCGCTACAAGCTGCTCGG+AGG | 0.669048 | 1.1:-27898830 | MS.gene063717:CDS |
| GCGCACTGAGATCATCATCA+GGG | 0.670424 | 1.1:-27899478 | MS.gene063717:CDS |
| GAACCTCTTCTGCACAACTG+AGG | 0.678277 | 1.1:+27898934 | None:intergenic |
| GCTGAGAAGGTCAACAACAG+GGG | 0.681641 | 1.1:-27898881 | MS.gene063717:CDS |
| AAGTGGTGCCAAGGGATGTG+AGG | 0.685239 | 1.1:-27897743 | MS.gene063717:intron |
| GGTAACCCTAACCTCAACAC+CGG | 0.686278 | 1.1:+27899506 | None:intergenic |
| GAATGGTGACAATATCAGGG+AGG | 0.719800 | 1.1:+27897314 | None:intergenic |
| GATGATCTCAGTGCGCATAG+GGG | 0.725882 | 1.1:+27899485 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATGATATATGATATTTT+GGG | - | chr1.1:27897926-27897945 | MS.gene063717:intron | 10.0% |
| !!! | ATATTATGTTTGTTTTAATT+TGG | - | chr1.1:27897889-27897908 | MS.gene063717:intron | 10.0% |
| !!! | TATTATGTTTGTTTTAATTT+GGG | - | chr1.1:27897890-27897909 | MS.gene063717:intron | 10.0% |
| !! | ATATATGAAAATGTTATGTA+TGG | - | chr1.1:27897680-27897699 | MS.gene063717:intron | 15.0% |
| !! | ATTTATGAAATTGTTGTATA+TGG | - | chr1.1:27897584-27897603 | MS.gene063717:CDS | 15.0% |
| !! | TATTCAAGAGAATAAAAAAT+GGG | + | chr1.1:27899085-27899104 | None:intergenic | 15.0% |
| !!! | ATGATAATGATTTTTTACTT+AGG | - | chr1.1:27897759-27897778 | MS.gene063717:CDS | 15.0% |
| !!! | GATAATGATATATGATATTT+TGG | - | chr1.1:27897925-27897944 | MS.gene063717:intron | 15.0% |
| !!! | GTTTATTTTTGTTTCATTTT+TGG | - | chr1.1:27897549-27897568 | MS.gene063717:CDS | 15.0% |
| !!! | TCTTAATTCTTAATTTGATT+TGG | - | chr1.1:27897312-27897331 | MS.gene063717:CDS | 15.0% |
| !! | AATTAGTCAACAAATAACAT+TGG | + | chr1.1:27898861-27898880 | None:intergenic | 20.0% |
| !! | ATCATTATCATACATCATTA+GGG | + | chr1.1:27897632-27897651 | None:intergenic | 20.0% |
| !! | GTATTCAAGAGAATAAAAAA+TGG | + | chr1.1:27899086-27899105 | None:intergenic | 20.0% |
| !! | TAGCTAAACATAAACAAATA+TGG | + | chr1.1:27898269-27898288 | None:intergenic | 20.0% |
| !! | TATCATTATCATACATCATT+AGG | + | chr1.1:27897633-27897652 | None:intergenic | 20.0% |
| !! | TATTTGTTTATGTTTAGCTA+CGG | - | chr1.1:27898269-27898288 | MS.gene063717:intron | 20.0% |
| !! | TATTTGTTTATGTTTAGCTA+TGG | - | chr1.1:27898269-27898288 | MS.gene063717:intron | 20.0% |
| !! | TCATTATCATACATATTGAA+AGG | + | chr1.1:27897844-27897863 | None:intergenic | 20.0% |
| !!! | AACATTTTAAGAACCTAAAA+TGG | + | chr1.1:27898362-27898381 | None:intergenic | 20.0% |
| !!! | ACATTTTAAGAACCTAAAAT+GGG | + | chr1.1:27898361-27898380 | None:intergenic | 20.0% |
| !!! | ACATTTTGTTTTTCAGAATA+AGG | + | chr1.1:27898742-27898761 | None:intergenic | 20.0% |
| !!! | AGAAAATTACTCTAAAGAAA+CGG | + | chr1.1:27898693-27898712 | None:intergenic | 20.0% |
| !!! | TTTTTGAGATTGTATGTTTT+GGG | - | chr1.1:27898969-27898988 | MS.gene063717:intron | 20.0% |
| !!! | TTTTTTGAGATTGTATGTTT+TGG | - | chr1.1:27898968-27898987 | MS.gene063717:intron | 20.0% |
| ! | AATATATCGAGTACAAAAAG+AGG | + | chr1.1:27899010-27899029 | None:intergenic | 25.0% |
| ! | ATAGTATTAGGAGAAACAAT+TGG | - | chr1.1:27898211-27898230 | MS.gene063717:intron | 25.0% |
| ! | ATATATCGAGTACAAAAAGA+GGG | + | chr1.1:27899009-27899028 | None:intergenic | 25.0% |
| ! | CATTAGTAATAGAGATGAAT+TGG | + | chr1.1:27897289-27897308 | None:intergenic | 25.0% |
| ! | CATTATCATACATGATTAGA+GGG | + | chr1.1:27897748-27897767 | None:intergenic | 25.0% |
| ! | GAATGTCATAGTGATATATA+TGG | - | chr1.1:27898177-27898196 | MS.gene063717:intron | 25.0% |
| ! | GTTCGAAGTTAAATAGTATT+AGG | - | chr1.1:27898199-27898218 | MS.gene063717:intron | 25.0% |
| ! | TAACATATGCTCATGTTAAA+TGG | - | chr1.1:27898907-27898926 | MS.gene063717:CDS | 25.0% |
| ! | TAGGAAAAAGAAAGCAAATA+AGG | + | chr1.1:27899450-27899469 | None:intergenic | 25.0% |
| ! | TCATTATCATACATGATTAG+AGG | + | chr1.1:27897749-27897768 | None:intergenic | 25.0% |
| ! | TGTTAAAGCTAATAGAACTT+CGG | + | chr1.1:27898892-27898911 | None:intergenic | 25.0% |
| !! | TATTTCAGTTTTCCTTTTAC+TGG | - | chr1.1:27899026-27899045 | MS.gene063717:intron | 25.0% |
| !!! | AATTTTTAATTACCACCCAT+TGG | + | chr1.1:27899061-27899080 | None:intergenic | 25.0% |
| !!! | TTTGTAGACTCTTTTTAAAG+AGG | - | chr1.1:27898505-27898524 | MS.gene063717:intron | 25.0% |
| AAAGAGGACTAAATCATGTT+GGG | - | chr1.1:27898521-27898540 | MS.gene063717:intron | 30.0% | |
| AAATCCATGAAGTTCAAAGA+TGG | - | chr1.1:27899331-27899350 | MS.gene063717:intron | 30.0% | |
| AATCTGCAACTATTGTAACA+TGG | - | chr1.1:27898937-27898956 | MS.gene063717:CDS | 30.0% | |
| ACATAGCAAACATAAAACAC+AGG | + | chr1.1:27898806-27898825 | None:intergenic | 30.0% | |
| ATATCCATCTTTGAACTTCA+TGG | + | chr1.1:27899338-27899357 | None:intergenic | 30.0% | |
| ATCTTTGAACTTCATGGATT+TGG | + | chr1.1:27899332-27899351 | None:intergenic | 30.0% | |
| CAAATAACATTGGAACAAAG+AGG | + | chr1.1:27898851-27898870 | None:intergenic | 30.0% | |
| CAGAAAACAGTATAACAAAC+AGG | + | chr1.1:27899239-27899258 | None:intergenic | 30.0% | |
| GATGGATATATGATTTCTTC+TGG | - | chr1.1:27899349-27899368 | MS.gene063717:intron | 30.0% | |
| TAAAGAGGACTAAATCATGT+TGG | - | chr1.1:27898520-27898539 | MS.gene063717:intron | 30.0% | |
| TATTGTCAGTGGAAAATTGA+GGG | - | chr1.1:27899297-27899316 | MS.gene063717:intron | 30.0% | |
| TTATTGTCAGTGGAAAATTG+AGG | - | chr1.1:27899296-27899315 | MS.gene063717:intron | 30.0% | |
| TTGTTTATGTTTAGCTATGG+TGG | - | chr1.1:27898331-27898350 | MS.gene063717:intron | 30.0% | |
| ! | AAAAAGAGGGATTTTAGATC+TGG | + | chr1.1:27898996-27899015 | None:intergenic | 30.0% |
| ! | GTCTCTAACTATTTCTTTCA+GGG | - | chr1.1:27899132-27899151 | MS.gene063717:intron | 30.0% |
| ! | TGTCTCTAACTATTTCTTTC+AGG | - | chr1.1:27899131-27899150 | MS.gene063717:intron | 30.0% |
| ! | TTTCATGTTGGTTGTTCATT+TGG | - | chr1.1:27899475-27899494 | MS.gene063717:CDS | 30.0% |
| !! | GTTGTTCATTTGGTTTGATA+TGG | - | chr1.1:27899485-27899504 | MS.gene063717:CDS | 30.0% |
| !! | TGTTTTTCAGAATAAGGAGA+TGG | + | chr1.1:27898736-27898755 | None:intergenic | 30.0% |
| !! | TTTGGGTTTTTGTGATGTAT+AGG | - | chr1.1:27897943-27897962 | MS.gene063717:intron | 30.0% |
| ATGATAAGCTAACCTGTCTA+AGG | + | chr1.1:27899420-27899439 | None:intergenic | 35.0% | |
| GTTGAGCTGTTATAACATGT+TGG | - | chr1.1:27898765-27898784 | MS.gene063717:intron | 35.0% | |
| TACTGGTGTGTATTTCCAAT+GGG | - | chr1.1:27899043-27899062 | MS.gene063717:intron | 35.0% | |
| TGGAAATACACACCAGTAAA+AGG | + | chr1.1:27899041-27899060 | None:intergenic | 35.0% | |
| TGTGAATGGTGACAATATCA+GGG | + | chr1.1:27899621-27899640 | None:intergenic | 35.0% | |
| TTACTGGTGTGTATTTCCAA+TGG | - | chr1.1:27899042-27899061 | MS.gene063717:intron | 35.0% | |
| TTGTGATGTATAGGTGAGAA+GGG | - | chr1.1:27897952-27897971 | MS.gene063717:intron | 35.0% | |
| TTGTTTATGTTTAGCTACGG+TGG | - | chr1.1:27898272-27898291 | MS.gene063717:intron | 35.0% | |
| TTTCTTCGCTGAATTGAATG+AGG | - | chr1.1:27897367-27897386 | MS.gene063717:CDS | 35.0% | |
| TTTGTGATGTATAGGTGAGA+AGG | - | chr1.1:27897951-27897970 | MS.gene063717:intron | 35.0% | |
| ! | AATCATGTTGGGCATTTTCT+TGG | - | chr1.1:27898532-27898551 | MS.gene063717:intron | 35.0% |
| ! | TGGGACTCATAAAGCATTTA+AGG | + | chr1.1:27898599-27898618 | None:intergenic | 35.0% |
| ! | TTTCCTACAGCTTTTCATGT+TGG | - | chr1.1:27899463-27899482 | MS.gene063717:CDS | 35.0% |
| !! | TGTAATTGTTTTTCACGTGC+AGG | - | chr1.1:27899273-27899292 | MS.gene063717:intron | 35.0% |
| !!! | CTTTCGCTTTTTGCTCATTT+GGG | + | chr1.1:27897235-27897254 | None:intergenic | 35.0% |
| AAAGAAACGGTAAAGTCACC+TGG | + | chr1.1:27898680-27898699 | None:intergenic | 40.0% | |
| AATGGTGACAATATCAGGGA+GGG | + | chr1.1:27899617-27899636 | None:intergenic | 40.0% | |
| AGAACACCCTACAACACAAA+GGG | + | chr1.1:27899532-27899551 | None:intergenic | 40.0% | |
| CAACCAACATGAAAAGCTGT+AGG | + | chr1.1:27899469-27899488 | None:intergenic | 40.0% | |
| CCAAATGAGCAAAAAGCGAA+AGG | - | chr1.1:27897233-27897252 | MS.gene063717:CDS | 40.0% | |
| CTTTATGAGTCCCAACTTAG+GGG | - | chr1.1:27898605-27898624 | MS.gene063717:intron | 40.0% | |
| GCTTTATGAGTCCCAACTTA+GGG | - | chr1.1:27898604-27898623 | MS.gene063717:intron | 40.0% | |
| GTGTGAATGGTGACAATATC+AGG | + | chr1.1:27899622-27899641 | None:intergenic | 40.0% | |
| TCAAAGCTGTCTCTGATGAT+TGG | - | chr1.1:27898438-27898457 | MS.gene063717:intron | 40.0% | |
| TGCTTTATGAGTCCCAACTT+AGG | - | chr1.1:27898603-27898622 | MS.gene063717:intron | 40.0% | |
| TGTTGTGGCCAATGATATTG+AGG | - | chr1.1:27899678-27899697 | MS.gene063717:intron | 40.0% | |
| TTGAGGTTTGTCATGGAAAG+TGG | - | chr1.1:27899169-27899188 | MS.gene063717:intron | 40.0% | |
| TTTCAATGCACCCCTAAGTT+GGG | + | chr1.1:27898618-27898637 | None:intergenic | 40.0% | |
| ! | TTATTCCGGTGTTGAGGTTA+GGG | - | chr1.1:27897418-27897437 | MS.gene063717:intron | 40.0% |
| ! | TTTGTGTTGTAGGGTGTTCT+CGG | - | chr1.1:27899532-27899551 | MS.gene063717:CDS | 40.0% |
| ! | TTTTCAATGCACCCCTAAGT+TGG | + | chr1.1:27898619-27898638 | None:intergenic | 40.0% |
| !! | TATGGTGGAAAGCCCATTTT+AGG | - | chr1.1:27898346-27898365 | MS.gene063717:intron | 40.0% |
| !!! | CCTTTCGCTTTTTGCTCATT+TGG | + | chr1.1:27897236-27897255 | None:intergenic | 40.0% |
| AAAACGAACCTCACATCCCT+TGG | + | chr1.1:27899197-27899216 | None:intergenic | 45.0% | |
| AAACCTCAACACACCATAGC+AGG | + | chr1.1:27899158-27899177 | None:intergenic | 45.0% | |
| AGGTTAAGATCATGCTCGAC+TGG | - | chr1.1:27899560-27899579 | MS.gene063717:CDS | 45.0% | |
| ATGAGTTACCGAGAACAGCT+TGG | + | chr1.1:27897487-27897506 | None:intergenic | 45.0% | |
| ATGATGATCTCAGTGCGCAT+AGG | + | chr1.1:27897449-27897468 | None:intergenic | 45.0% | |
| ATGGTGACAATATCAGGGAG+GGG | + | chr1.1:27899616-27899635 | None:intergenic | 45.0% | |
| ATGTACTCCTCCTCTTCCTT+TGG | + | chr1.1:27899646-27899665 | None:intergenic | 45.0% | |
| ATTTCTTTCAGGGCCTGCTA+TGG | - | chr1.1:27899142-27899161 | MS.gene063717:intron | 45.0% | |
| CATTCACACTCCAAAGGAAG+AGG | - | chr1.1:27899633-27899652 | MS.gene063717:intron | 45.0% | |
| CTTGCTGAGGATGGTTATTC+CGG | - | chr1.1:27897404-27897423 | MS.gene063717:intron | 45.0% | |
| GAATGGTGACAATATCAGGG+AGG | + | chr1.1:27899618-27899637 | None:intergenic | 45.0% | |
| GACAGGGACCTCAATATCAT+TGG | + | chr1.1:27899689-27899708 | None:intergenic | 45.0% | |
| GAGAACACCCTACAACACAA+AGG | + | chr1.1:27899533-27899552 | None:intergenic | 45.0% | |
| GAGTCAATGTAGTCCTTGAC+TGG | + | chr1.1:27899379-27899398 | None:intergenic | 45.0% | |
| GATGTATAGGTGAGAAGGGA+AGG | - | chr1.1:27897956-27897975 | MS.gene063717:intron | 45.0% | |
| GGTTAAGATCATGCTCGACT+GGG | - | chr1.1:27899561-27899580 | MS.gene063717:CDS | 45.0% | |
| GTTGTGCCCTTTGTGTTGTA+GGG | - | chr1.1:27899523-27899542 | MS.gene063717:CDS | 45.0% | |
| TAAAGCTCAACGCTGTTCTC+AGG | + | chr1.1:27898027-27898046 | None:intergenic | 45.0% | |
| TGAGTTACCGAGAACAGCTT+GGG | + | chr1.1:27897486-27897505 | None:intergenic | 45.0% | |
| TGATGATCTCAGTGCGCATA+GGG | + | chr1.1:27897448-27897467 | None:intergenic | 45.0% | |
| TGGGATCCTAAAGGAAAGCA+GGG | - | chr1.1:27899580-27899599 | MS.gene063717:CDS | 45.0% | |
| TGGTGTGTATTTCCAATGGG+TGG | - | chr1.1:27899046-27899065 | MS.gene063717:intron | 45.0% | |
| TGGTGTGTTGAGGTTTGTCA+TGG | - | chr1.1:27899162-27899181 | MS.gene063717:intron | 45.0% | |
| TGTCACCATTCACACTCCAA+AGG | - | chr1.1:27899627-27899646 | MS.gene063717:intron | 45.0% | |
| TGTTGTGCCCTTTGTGTTGT+AGG | - | chr1.1:27899522-27899541 | MS.gene063717:CDS | 45.0% | |
| TTCTTCTGGACAACCAGTCA+AGG | - | chr1.1:27899363-27899382 | MS.gene063717:intron | 45.0% | |
| ! | ATATCAGGGAGGGGAGTTTT+AGG | + | chr1.1:27899607-27899626 | None:intergenic | 45.0% |
| ! | GTTATTCCGGTGTTGAGGTT+AGG | - | chr1.1:27897417-27897436 | MS.gene063717:intron | 45.0% |
| ! | TATCAGGGAGGGGAGTTTTA+GGG | + | chr1.1:27899606-27899625 | None:intergenic | 45.0% |
| !! | ACTTCATGGATTTGGCTCTC+TGG | + | chr1.1:27899324-27899343 | None:intergenic | 45.0% |
| !! | CTCTTCCTTTGGAGTGTGAA+TGG | + | chr1.1:27899635-27899654 | None:intergenic | 45.0% |
| !! | CTTCATGGATTTGGCTCTCT+GGG | + | chr1.1:27899323-27899342 | None:intergenic | 45.0% |
| !! | TTTGACAAGAGAGCTTGCTG+AGG | - | chr1.1:27897391-27897410 | MS.gene063717:intron | 45.0% |
| AAACGGTAAAGTCACCTGGC+TGG | + | chr1.1:27898676-27898695 | None:intergenic | 50.0% | |
| AAGAGACTCAGCCTGAGCAA+TGG | + | chr1.1:27898082-27898101 | None:intergenic | 50.0% | |
| ACGCTGAGAAGGTCAACAAC+AGG | - | chr1.1:27898046-27898065 | MS.gene063717:intron | 50.0% | |
| ACTCGTACCCAAGCTGTTCT+CGG | - | chr1.1:27897476-27897495 | MS.gene063717:intron | 50.0% | |
| ATGCTCGACTGGGATCCTAA+AGG | - | chr1.1:27899571-27899590 | MS.gene063717:CDS | 50.0% | |
| CACGTGCAGGTTATTGTCAG+TGG | - | chr1.1:27899286-27899305 | MS.gene063717:intron | 50.0% | |
| CCTGAGATTGAATACCAGCC+AGG | - | chr1.1:27898659-27898678 | MS.gene063717:intron | 50.0% | |
| CCTGGCTGGTATTCAATCTC+AGG | + | chr1.1:27898662-27898681 | None:intergenic | 50.0% | |
| CGCTGAGAAGGTCAACAACA+GGG | - | chr1.1:27898047-27898066 | MS.gene063717:intron | 50.0% | |
| CGTTGAGCTTTACGCTGAGA+AGG | - | chr1.1:27898035-27898054 | MS.gene063717:intron | 50.0% | |
| CTGGGATCCTAAAGGAAAGC+AGG | - | chr1.1:27899579-27899598 | MS.gene063717:CDS | 50.0% | |
| GAACCTCTTCTGCACAACTG+AGG | + | chr1.1:27897998-27898017 | None:intergenic | 50.0% | |
| GAGACATGTGCTCCTTAGAC+AGG | - | chr1.1:27899405-27899424 | MS.gene063717:intron | 50.0% | |
| GATGATCTCAGTGCGCATAG+GGG | + | chr1.1:27897447-27897466 | None:intergenic | 50.0% | |
| GCGCACTGAGATCATCATCA+GGG | - | chr1.1:27897451-27897470 | MS.gene063717:intron | 50.0% | |
| GCTGAGAAGGTCAACAACAG+GGG | - | chr1.1:27898048-27898067 | MS.gene063717:intron | 50.0% | |
| GGTAACCCTAACCTCAACAC+CGG | + | chr1.1:27897426-27897445 | None:intergenic | 50.0% | |
| TCACACTCCAAAGGAAGAGG+AGG | - | chr1.1:27899636-27899655 | MS.gene063717:intron | 50.0% | |
| TCTCTTCGCTACAAGCTGCT+CGG | - | chr1.1:27898096-27898115 | MS.gene063717:intron | 50.0% | |
| TGACCTCAGTTGTGCAGAAG+AGG | - | chr1.1:27897992-27898011 | MS.gene063717:intron | 50.0% | |
| TGCGCACTGAGATCATCATC+AGG | - | chr1.1:27897450-27897469 | MS.gene063717:intron | 50.0% | |
| TTAGGGCCCTGCTTTCCTTT+AGG | + | chr1.1:27899589-27899608 | None:intergenic | 50.0% | |
| TTGTTGCAGTTCGTCGCTGA+CGG | - | chr1.1:27897341-27897360 | MS.gene063717:CDS | 50.0% | |
| ! | AGGAAGAGGAGGAGTACATC+AGG | - | chr1.1:27899647-27899666 | MS.gene063717:intron | 50.0% |
| ! | GGATGGTTATTCCGGTGTTG+AGG | - | chr1.1:27897412-27897431 | MS.gene063717:intron | 50.0% |
| ! | GTAGGGTGTTCTCGGTATCA+AGG | - | chr1.1:27899540-27899559 | MS.gene063717:CDS | 50.0% |
| ! | GTCATGGAAAGTGGTGCCAA+GGG | - | chr1.1:27899178-27899197 | MS.gene063717:intron | 50.0% |
| ! | TGTCATGGAAAGTGGTGCCA+AGG | - | chr1.1:27899177-27899196 | MS.gene063717:intron | 50.0% |
| !! | ACAAGAGAGCTTGCTGAGGA+TGG | - | chr1.1:27897395-27897414 | MS.gene063717:intron | 50.0% |
| AAACAACGGGGACTGGGACA+GGG | + | chr1.1:27899705-27899724 | None:intergenic | 55.0% | |
| TCATTGGCCACAACAGCAGC+AGG | + | chr1.1:27899673-27899692 | None:intergenic | 55.0% | |
| ! | AAGTGGTGCCAAGGGATGTG+AGG | - | chr1.1:27899186-27899205 | MS.gene063717:intron | 55.0% |
| ! | GGGACTTTGTGCCATTGCTC+AGG | - | chr1.1:27898068-27898087 | MS.gene063717:intron | 55.0% |
| CAAACAACGGGGACTGGGAC+AGG | + | chr1.1:27899706-27899725 | None:intergenic | 60.0% | |
| CATCAGGCCTGCTGCTGTTG+TGG | - | chr1.1:27899663-27899682 | MS.gene063717:intron | 60.0% | |
| CTTCGCTACAAGCTGCTCGG+AGG | - | chr1.1:27898099-27898118 | MS.gene063717:intron | 60.0% | |
| GGGCCTGCTATGGTGTGTTG+AGG | - | chr1.1:27899152-27899171 | MS.gene063717:intron | 60.0% | |
| !! | TCGGAGGTCTTGCTGTTCGC+AGG | - | chr1.1:27898115-27898134 | MS.gene063717:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 27897225 | 27899726 | 27897225 | ID=MS.gene063717 |
| chr1.1 | mRNA | 27897225 | 27899726 | 27897225 | ID=MS.gene063717.t1;Parent=MS.gene063717 |
| chr1.1 | exon | 27899697 | 27899726 | 27899697 | ID=MS.gene063717.t1.exon1;Parent=MS.gene063717.t1 |
| chr1.1 | CDS | 27899697 | 27899726 | 27899697 | ID=cds.MS.gene063717.t1;Parent=MS.gene063717.t1 |
| chr1.1 | exon | 27899454 | 27899601 | 27899454 | ID=MS.gene063717.t1.exon2;Parent=MS.gene063717.t1 |
| chr1.1 | CDS | 27899454 | 27899601 | 27899454 | ID=cds.MS.gene063717.t1;Parent=MS.gene063717.t1 |
| chr1.1 | exon | 27898815 | 27898986 | 27898815 | ID=MS.gene063717.t1.exon3;Parent=MS.gene063717.t1 |
| chr1.1 | CDS | 27898815 | 27898986 | 27898815 | ID=cds.MS.gene063717.t1;Parent=MS.gene063717.t1 |
| chr1.1 | exon | 27897744 | 27897798 | 27897744 | ID=MS.gene063717.t1.exon4;Parent=MS.gene063717.t1 |
| chr1.1 | CDS | 27897744 | 27897798 | 27897744 | ID=cds.MS.gene063717.t1;Parent=MS.gene063717.t1 |
| chr1.1 | exon | 27897525 | 27897656 | 27897525 | ID=MS.gene063717.t1.exon5;Parent=MS.gene063717.t1 |
| chr1.1 | CDS | 27897525 | 27897656 | 27897525 | ID=cds.MS.gene063717.t1;Parent=MS.gene063717.t1 |
| chr1.1 | exon | 27897225 | 27897407 | 27897225 | ID=MS.gene063717.t1.exon6;Parent=MS.gene063717.t1 |
| chr1.1 | CDS | 27897225 | 27897407 | 27897225 | ID=cds.MS.gene063717.t1;Parent=MS.gene063717.t1 |
| Gene Sequence |
| Protein sequence |
