Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene061619.t1 | XP_003590123.1 | 100 | 229 | 0 | 0 | 117 | 345 | 11 | 239 | 5.80E-121 | 444.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene061619.t1 | Q9FJA6 | 88.8 | 223 | 25 | 0 | 117 | 339 | 11 | 233 | 2.4e-107 | 390.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene061619.t1 | B7FH64 | 100.0 | 229 | 0 | 0 | 117 | 345 | 11 | 239 | 4.2e-121 | 444.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene061619 | MS.gene90723 | PPI |
MS.gene061619 | MS.gene053439 | PPI |
MS.gene026677 | MS.gene061619 | PPI |
MS.gene061619 | MS.gene98229 | PPI |
MS.gene061619 | MS.gene055646 | PPI |
MS.gene061619 | MS.gene93153 | PPI |
MS.gene41083 | MS.gene061619 | PPI |
MS.gene061619 | MS.gene98228 | PPI |
MS.gene061619 | MS.gene24232 | PPI |
MS.gene061619 | MS.gene08126 | PPI |
MS.gene061619 | MS.gene33653 | PPI |
MS.gene061619 | MS.gene31853 | PPI |
MS.gene41081 | MS.gene061619 | PPI |
MS.gene061619 | MS.gene063717 | PPI |
MS.gene27003 | MS.gene061619 | PPI |
MS.gene034801 | MS.gene061619 | PPI |
MS.gene20081 | MS.gene061619 | PPI |
MS.gene061619 | MS.gene96480 | PPI |
MS.gene36891 | MS.gene061619 | PPI |
MS.gene073885 | MS.gene061619 | PPI |
MS.gene061619 | MS.gene27265 | PPI |
MS.gene055644 | MS.gene061619 | PPI |
MS.gene63685 | MS.gene061619 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene061619.t1 | MTR_1g044660 | 100.000 | 229 | 0 | 0 | 117 | 345 | 11 | 239 | 1.73e-167 | 466 |
MS.gene061619.t1 | MTR_1g023000 | 99.127 | 229 | 2 | 0 | 117 | 345 | 11 | 239 | 8.21e-167 | 464 |
MS.gene061619.t1 | MTR_6g052140 | 94.298 | 228 | 8 | 1 | 117 | 344 | 11 | 233 | 3.44e-156 | 437 |
MS.gene061619.t1 | MTR_6g052220 | 94.298 | 228 | 8 | 1 | 117 | 344 | 11 | 233 | 3.44e-156 | 437 |
MS.gene061619.t1 | MTR_1g111450 | 86.161 | 224 | 30 | 1 | 118 | 340 | 12 | 235 | 6.88e-140 | 396 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene061619.t1 | AT5G35530 | 88.789 | 223 | 25 | 0 | 117 | 339 | 11 | 233 | 2.37e-144 | 408 |
MS.gene061619.t1 | AT3G53870 | 92.754 | 207 | 15 | 0 | 117 | 323 | 11 | 217 | 4.00e-140 | 397 |
MS.gene061619.t1 | AT2G31610 | 88.940 | 217 | 24 | 0 | 117 | 333 | 11 | 227 | 4.62e-140 | 397 |
Find 111 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAAAGGAGAAAGAGTTTATT+TGG | 0.167523 | 1.2:+27591555 | MS.gene061619:CDS |
ATCTTTGAACTTCATGGATT+TGG | 0.206773 | 1.2:-27598166 | None:intergenic |
ATATCCATCTTTGAACTTCA+TGG | 0.225934 | 1.2:-27598172 | None:intergenic |
TTAGGGCCCTGCTTTCCTTT+AGG | 0.246468 | 1.2:-27598422 | None:intergenic |
GTTATTCTGGTGTTGAAGTT+AGG | 0.246560 | 1.2:+27595754 | MS.gene061619:CDS |
GATGGATATATGATTTCTTC+TGG | 0.289581 | 1.2:+27598186 | MS.gene061619:CDS |
CTTGCTGAAGATGGTTATTC+TGG | 0.300476 | 1.2:+27595741 | MS.gene061619:CDS |
ACTTCATGGATTTGGCTCTC+TGG | 0.314330 | 1.2:-27598158 | None:intergenic |
GTGTGAATGGTGACAATATC+AGG | 0.336609 | 1.2:-27598455 | None:intergenic |
CTTCATGGATTTGGCTCTCT+GGG | 0.348818 | 1.2:-27598157 | None:intergenic |
CTCTTCCTTTGGAGTGTGAA+TGG | 0.357277 | 1.2:-27598468 | None:intergenic |
ATGTACTCCTCCTCTTCCTT+TGG | 0.368386 | 1.2:-27598479 | None:intergenic |
CAAACAACGGGGACTGGGAC+AGG | 0.374639 | 1.2:-27598539 | None:intergenic |
ATGATAAGCTAACCTGTCTA+AGG | 0.386367 | 1.2:-27598254 | None:intergenic |
TTTGTGTTGTAGGGTGTTCT+CGG | 0.388366 | 1.2:+27598368 | MS.gene061619:intron |
TGCTTTGTTGAGCTCTTGAT+AGG | 0.400979 | 1.2:-27591521 | None:intergenic |
GGGACTTTGCGCCATTGCTC+AGG | 0.406058 | 1.2:+27596421 | MS.gene061619:CDS |
ATATAGTCATTGAGGTTCAT+AGG | 0.412479 | 1.2:-27593413 | None:intergenic |
ATCAATGCTTCTGCGGTTGT+AGG | 0.413291 | 1.2:-27593380 | None:intergenic |
TTATTCTGGTGTTGAAGTTA+GGG | 0.418683 | 1.2:+27595755 | MS.gene061619:CDS |
TTGAGCTCTTGATAGGACTT+AGG | 0.434259 | 1.2:-27591514 | None:intergenic |
ACGCTGAGAAGGTCAACAAC+AGG | 0.438336 | 1.2:+27596399 | MS.gene061619:CDS |
ACCAGAGAGCTTGCTGAAGA+TGG | 0.446072 | 1.2:+27595732 | MS.gene061619:CDS |
GAGAAAGAGTTTATTTGGGC+AGG | 0.451400 | 1.2:+27591560 | MS.gene061619:CDS |
AGGTTAAGATCATGCTTGAC+TGG | 0.451430 | 1.2:+27598396 | MS.gene061619:CDS |
AAAGGAGAAAGAGTTTATTT+GGG | 0.454137 | 1.2:+27591556 | MS.gene061619:CDS |
TCGGTGGTCTTGCTGTTCGC+AGG | 0.459455 | 1.2:+27596468 | MS.gene061619:CDS |
CATCAGGCCTGCTGCTGTTG+TGG | 0.461102 | 1.2:+27598499 | MS.gene061619:CDS |
TGCGCACTGAGATCATCATC+AGG | 0.467489 | 1.2:+27595787 | MS.gene061619:CDS |
TTGTGATGTATAGGGGAGAA+GGG | 0.467489 | 1.2:+27596305 | MS.gene061619:intron |
AGGAAGAGGAGGAGTACATC+AGG | 0.468833 | 1.2:+27598483 | MS.gene061619:CDS |
TCTCTTCGCTACAAGCTTCT+CGG | 0.469720 | 1.2:+27596449 | MS.gene061619:CDS |
ATTTCTTTCAGGGCCTGCTA+TGG | 0.473754 | 1.2:+27597979 | MS.gene061619:intron |
GATGTATAGGGGAGAAGGGA+AGG | 0.477057 | 1.2:+27596309 | MS.gene061619:intron |
ACTCGTACCCAAGCTGTTCT+CGG | 0.490767 | 1.2:+27595813 | MS.gene061619:CDS |
ACCATCTTCAGCAAGCTCTC+TGG | 0.492594 | 1.2:-27595733 | None:intergenic |
CTGGGATCCTAAAGGAAAGC+AGG | 0.500050 | 1.2:+27598415 | MS.gene061619:CDS |
TTTGTGATGTATAGGGGAGA+AGG | 0.500288 | 1.2:+27596304 | MS.gene061619:intron |
TAAAGCTCAACACTGTTCTC+AGG | 0.503525 | 1.2:-27596377 | None:intergenic |
GACAGGGACCTCAATATCAT+TGG | 0.510522 | 1.2:-27598522 | None:intergenic |
GAGACATGTGCTCCTTAGAC+AGG | 0.512478 | 1.2:+27598242 | MS.gene061619:CDS |
GTAGGGTGTTCTCGGTATCA+AGG | 0.512546 | 1.2:+27598376 | MS.gene061619:intron |
TCATTGGCCACAACAGCAGC+AGG | 0.512718 | 1.2:-27598506 | None:intergenic |
TGTTTCTTGTAGTGTAAGCA+TGG | 0.514139 | 1.2:+27591463 | MS.gene061619:intron |
TGATGATCTCAGTGCGCATA+GGG | 0.514210 | 1.2:-27595782 | None:intergenic |
CTCTTTGATCAATGCTTCTG+CGG | 0.515475 | 1.2:-27593387 | None:intergenic |
CATGTGTGTTAGCGAGGAAA+CGG | 0.515881 | 1.2:-27591313 | None:intergenic |
AAGCATGGGAGCTTGCTGTT+GGG | 0.519143 | 1.2:+27591478 | MS.gene061619:CDS |
AAACCTCAACACACCATAGC+AGG | 0.520448 | 1.2:-27597992 | None:intergenic |
TTCTTCTGGACAACCAGTCA+AGG | 0.524528 | 1.2:+27598200 | MS.gene061619:CDS |
TATTGTCAGTGGAAAATTGA+GGG | 0.525395 | 1.2:+27598134 | MS.gene061619:CDS |
TGAGTTACCGAGAACAGCTT+GGG | 0.525457 | 1.2:-27595820 | None:intergenic |
GTATAGGGGAGAAGGGAAGG+AGG | 0.526886 | 1.2:+27596312 | MS.gene061619:intron |
CACGTGCAGGTTATTGTCAG+TGG | 0.527776 | 1.2:+27598123 | MS.gene061619:intron |
AAAGCAACAAAAGGTTTCAA+AGG | 0.529675 | 1.2:+27591538 | MS.gene061619:CDS |
AAATCCATGAAGTTCAAAGA+TGG | 0.529947 | 1.2:+27598168 | MS.gene061619:CDS |
TTTCTTCGCTGAATTGAATG+AGG | 0.530015 | 1.2:+27595704 | MS.gene061619:CDS |
GAGCTCAACAAAGCAACAAA+AGG | 0.530800 | 1.2:+27591529 | MS.gene061619:CDS |
AGAAAGAGTTTATTTGGGCA+GGG | 0.531944 | 1.2:+27591561 | MS.gene061619:CDS |
TGACCTCAGTTGTGCAGAAG+AGG | 0.532735 | 1.2:+27596345 | MS.gene061619:CDS |
ATGAGTTACCGAGAACAGCT+TGG | 0.534831 | 1.2:-27595821 | None:intergenic |
TAAGCATGGGAGCTTGCTGT+TGG | 0.536776 | 1.2:+27591477 | MS.gene061619:CDS |
TTGAGGTTTGTCATGGAAAG+TGG | 0.550123 | 1.2:+27598006 | MS.gene061619:CDS |
CGCTGAGAAGGTCAACAACA+GGG | 0.550500 | 1.2:+27596400 | MS.gene061619:CDS |
GAGTCAATGTAGTCCTTGAC+TGG | 0.552164 | 1.2:-27598213 | None:intergenic |
AATGCTTCTGCGGTTGTAGG+AGG | 0.554167 | 1.2:-27593377 | None:intergenic |
ATGCTTGACTGGGATCCTAA+AGG | 0.556783 | 1.2:+27598407 | MS.gene061619:CDS |
TTGTTGCAGTTCGTCGCTGA+CGG | 0.560423 | 1.2:+27595678 | MS.gene061619:intron |
ATGATGATCTCAGTGCGCAT+AGG | 0.560609 | 1.2:-27595783 | None:intergenic |
AAAACGAACCTCACATCCCT+TGG | 0.565171 | 1.2:-27598031 | None:intergenic |
TTACCGAGGAAATATTTCCT+AGG | 0.567209 | 1.2:-27591284 | None:intergenic |
TGTCATGGAAAGTGGTGCCA+AGG | 0.570166 | 1.2:+27598014 | MS.gene061619:CDS |
CTTACCTAGGAAAATTTCCT+CGG | 0.570866 | 1.2:+27591381 | MS.gene061619:CDS |
GGGCCTGCTATGGTGTGTTG+AGG | 0.572929 | 1.2:+27597989 | MS.gene061619:intron |
TGTTAGCGAGGAAACGGAGG+TGG | 0.573243 | 1.2:-27591307 | None:intergenic |
AAACAACGGGGACTGGGACA+GGG | 0.577925 | 1.2:-27598538 | None:intergenic |
AAGAGACTCAGCCTGAGCAA+TGG | 0.580088 | 1.2:-27596432 | None:intergenic |
CATTCACACTCCAAAGGAAG+AGG | 0.584530 | 1.2:+27598469 | MS.gene061619:CDS |
TGGTGTGTTGAGGTTTGTCA+TGG | 0.586163 | 1.2:+27597999 | MS.gene061619:CDS |
TTATTGTCAGTGGAAAATTG+AGG | 0.586639 | 1.2:+27598133 | MS.gene061619:CDS |
GTTTCTTGTAGTGTAAGCAT+GGG | 0.586718 | 1.2:+27591464 | MS.gene061619:intron |
TGTTGAGCTTTACGCTGAGA+AGG | 0.587026 | 1.2:+27596388 | MS.gene061619:CDS |
TCTGTACCATGTGTTTACCT+AGG | 0.591236 | 1.2:+27591267 | None:intergenic |
TTACCTAGGAAATATTTCCT+CGG | 0.592722 | 1.2:+27591281 | MS.gene061619:CDS |
TGTTGTGGCCAATGATATTG+AGG | 0.598745 | 1.2:+27598514 | MS.gene061619:CDS |
GGTTAAGATCATGCTTGACT+GGG | 0.599204 | 1.2:+27598397 | MS.gene061619:CDS |
AATGGTGACAATATCAGGGA+GGG | 0.600476 | 1.2:-27598450 | None:intergenic |
AGCGAGGAAACTGAATTCCT+CGG | 0.607945 | 1.2:+27591418 | MS.gene061619:CDS |
TGGGATCCTAAAGGAAAGCA+GGG | 0.609284 | 1.2:+27598416 | MS.gene061619:CDS |
TCACACTCCAAAGGAAGAGG+AGG | 0.628998 | 1.2:+27598472 | MS.gene061619:CDS |
ACGGTCAAAGAAGCTTACCT+AGG | 0.640852 | 1.2:+27591368 | MS.gene061619:CDS |
GTCATGGAAAGTGGTGCCAA+GGG | 0.643243 | 1.2:+27598015 | MS.gene061619:CDS |
TGTGAATGGTGACAATATCA+GGG | 0.645355 | 1.2:-27598454 | None:intergenic |
GTGTGTTAGCGAGGAAACGG+AGG | 0.646266 | 1.2:-27591310 | None:intergenic |
AGTCAGCATGTGTGTTAGCG+AGG | 0.650795 | 1.2:-27591319 | None:intergenic |
GGTATGCATTGTCGTTAGCG+AGG | 0.654253 | 1.2:+27591402 | MS.gene061619:CDS |
ATGGTGACAATATCAGGGAG+GGG | 0.658335 | 1.2:-27598449 | None:intergenic |
TGTCACCATTCACACTCCAA+AGG | 0.659904 | 1.2:+27598463 | MS.gene061619:CDS |
GGAAACGGAGGTGGTTACCG+AGG | 0.668801 | 1.2:-27591298 | None:intergenic |
GCGCACTGAGATCATCATCA+GGG | 0.670424 | 1.2:+27595788 | MS.gene061619:CDS |
GAACCTCTTCTGCACAACTG+AGG | 0.678277 | 1.2:-27596348 | None:intergenic |
GCTGAGAAGGTCAACAACAG+GGG | 0.681641 | 1.2:+27596401 | MS.gene061619:CDS |
TTTGACCACTGAAAAGCTGA+CGG | 0.683963 | 1.2:-27591346 | None:intergenic |
AAGTGGTGCCAAGGGATGTG+AGG | 0.685239 | 1.2:+27598023 | MS.gene061619:CDS |
CTTCGCTACAAGCTTCTCGG+TGG | 0.688232 | 1.2:+27596452 | MS.gene061619:CDS |
GAATGGTGACAATATCAGGG+AGG | 0.719800 | 1.2:-27598451 | None:intergenic |
GACCACTGAAAAGCTGACGG+TGG | 0.725760 | 1.2:-27591343 | None:intergenic |
GATGATCTCAGTGCGCATAG+GGG | 0.725882 | 1.2:-27595781 | None:intergenic |
ATATTTCCTAGGTAAACACA+TGG | 0.731829 | 1.2:-27591273 | None:intergenic |
GCTAACGACAATGCATACCG+AGG | 0.734381 | 1.2:-27591398 | None:intergenic |
AGGACTTAGGAGTATCAATG+TGG | 0.739007 | 1.2:-27591501 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 27591275 | 27598562 | 27591275 | ID=MS.gene061619 |
chr1.2 | mRNA | 27591275 | 27598562 | 27591275 | ID=MS.gene061619.t1;Parent=MS.gene061619 |
chr1.2 | exon | 27591275 | 27591439 | 27591275 | ID=MS.gene061619.t1.exon1;Parent=MS.gene061619.t1 |
chr1.2 | CDS | 27591275 | 27591439 | 27591275 | ID=cds.MS.gene061619.t1;Parent=MS.gene061619.t1 |
chr1.2 | exon | 27591475 | 27591582 | 27591475 | ID=MS.gene061619.t1.exon2;Parent=MS.gene061619.t1 |
chr1.2 | CDS | 27591475 | 27591582 | 27591475 | ID=cds.MS.gene061619.t1;Parent=MS.gene061619.t1 |
chr1.2 | exon | 27593371 | 27593445 | 27593371 | ID=MS.gene061619.t1.exon3;Parent=MS.gene061619.t1 |
chr1.2 | CDS | 27593371 | 27593445 | 27593371 | ID=cds.MS.gene061619.t1;Parent=MS.gene061619.t1 |
chr1.2 | exon | 27595687 | 27595834 | 27595687 | ID=MS.gene061619.t1.exon4;Parent=MS.gene061619.t1 |
chr1.2 | CDS | 27595687 | 27595834 | 27595687 | ID=cds.MS.gene061619.t1;Parent=MS.gene061619.t1 |
chr1.2 | exon | 27596318 | 27596489 | 27596318 | ID=MS.gene061619.t1.exon5;Parent=MS.gene061619.t1 |
chr1.2 | CDS | 27596318 | 27596489 | 27596318 | ID=cds.MS.gene061619.t1;Parent=MS.gene061619.t1 |
chr1.2 | exon | 27597990 | 27598044 | 27597990 | ID=MS.gene061619.t1.exon6;Parent=MS.gene061619.t1 |
chr1.2 | CDS | 27597990 | 27598044 | 27597990 | ID=cds.MS.gene061619.t1;Parent=MS.gene061619.t1 |
chr1.2 | exon | 27598132 | 27598263 | 27598132 | ID=MS.gene061619.t1.exon7;Parent=MS.gene061619.t1 |
chr1.2 | CDS | 27598132 | 27598263 | 27598132 | ID=cds.MS.gene061619.t1;Parent=MS.gene061619.t1 |
chr1.2 | exon | 27598380 | 27598562 | 27598380 | ID=MS.gene061619.t1.exon8;Parent=MS.gene061619.t1 |
chr1.2 | CDS | 27598380 | 27598562 | 27598380 | ID=cds.MS.gene061619.t1;Parent=MS.gene061619.t1 |
Gene Sequence |
Protein sequence |