Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061619.t1 | XP_003590123.1 | 100 | 229 | 0 | 0 | 117 | 345 | 11 | 239 | 5.80E-121 | 444.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061619.t1 | Q9FJA6 | 88.8 | 223 | 25 | 0 | 117 | 339 | 11 | 233 | 2.4e-107 | 390.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061619.t1 | B7FH64 | 100.0 | 229 | 0 | 0 | 117 | 345 | 11 | 239 | 4.2e-121 | 444.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene061619 | MS.gene90723 | PPI |
| MS.gene061619 | MS.gene053439 | PPI |
| MS.gene026677 | MS.gene061619 | PPI |
| MS.gene061619 | MS.gene98229 | PPI |
| MS.gene061619 | MS.gene055646 | PPI |
| MS.gene061619 | MS.gene93153 | PPI |
| MS.gene41083 | MS.gene061619 | PPI |
| MS.gene061619 | MS.gene98228 | PPI |
| MS.gene061619 | MS.gene24232 | PPI |
| MS.gene061619 | MS.gene08126 | PPI |
| MS.gene061619 | MS.gene33653 | PPI |
| MS.gene061619 | MS.gene31853 | PPI |
| MS.gene41081 | MS.gene061619 | PPI |
| MS.gene061619 | MS.gene063717 | PPI |
| MS.gene27003 | MS.gene061619 | PPI |
| MS.gene034801 | MS.gene061619 | PPI |
| MS.gene20081 | MS.gene061619 | PPI |
| MS.gene061619 | MS.gene96480 | PPI |
| MS.gene36891 | MS.gene061619 | PPI |
| MS.gene073885 | MS.gene061619 | PPI |
| MS.gene061619 | MS.gene27265 | PPI |
| MS.gene055644 | MS.gene061619 | PPI |
| MS.gene63685 | MS.gene061619 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061619.t1 | MTR_1g044660 | 100.000 | 229 | 0 | 0 | 117 | 345 | 11 | 239 | 1.73e-167 | 466 |
| MS.gene061619.t1 | MTR_1g023000 | 99.127 | 229 | 2 | 0 | 117 | 345 | 11 | 239 | 8.21e-167 | 464 |
| MS.gene061619.t1 | MTR_6g052140 | 94.298 | 228 | 8 | 1 | 117 | 344 | 11 | 233 | 3.44e-156 | 437 |
| MS.gene061619.t1 | MTR_6g052220 | 94.298 | 228 | 8 | 1 | 117 | 344 | 11 | 233 | 3.44e-156 | 437 |
| MS.gene061619.t1 | MTR_1g111450 | 86.161 | 224 | 30 | 1 | 118 | 340 | 12 | 235 | 6.88e-140 | 396 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061619.t1 | AT5G35530 | 88.789 | 223 | 25 | 0 | 117 | 339 | 11 | 233 | 2.37e-144 | 408 |
| MS.gene061619.t1 | AT3G53870 | 92.754 | 207 | 15 | 0 | 117 | 323 | 11 | 217 | 4.00e-140 | 397 |
| MS.gene061619.t1 | AT2G31610 | 88.940 | 217 | 24 | 0 | 117 | 333 | 11 | 227 | 4.62e-140 | 397 |
Find 111 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAGGAGAAAGAGTTTATT+TGG | 0.167523 | 1.2:+27591555 | MS.gene061619:CDS |
| ATCTTTGAACTTCATGGATT+TGG | 0.206773 | 1.2:-27598166 | None:intergenic |
| ATATCCATCTTTGAACTTCA+TGG | 0.225934 | 1.2:-27598172 | None:intergenic |
| TTAGGGCCCTGCTTTCCTTT+AGG | 0.246468 | 1.2:-27598422 | None:intergenic |
| GTTATTCTGGTGTTGAAGTT+AGG | 0.246560 | 1.2:+27595754 | MS.gene061619:CDS |
| GATGGATATATGATTTCTTC+TGG | 0.289581 | 1.2:+27598186 | MS.gene061619:CDS |
| CTTGCTGAAGATGGTTATTC+TGG | 0.300476 | 1.2:+27595741 | MS.gene061619:CDS |
| ACTTCATGGATTTGGCTCTC+TGG | 0.314330 | 1.2:-27598158 | None:intergenic |
| GTGTGAATGGTGACAATATC+AGG | 0.336609 | 1.2:-27598455 | None:intergenic |
| CTTCATGGATTTGGCTCTCT+GGG | 0.348818 | 1.2:-27598157 | None:intergenic |
| CTCTTCCTTTGGAGTGTGAA+TGG | 0.357277 | 1.2:-27598468 | None:intergenic |
| ATGTACTCCTCCTCTTCCTT+TGG | 0.368386 | 1.2:-27598479 | None:intergenic |
| CAAACAACGGGGACTGGGAC+AGG | 0.374639 | 1.2:-27598539 | None:intergenic |
| ATGATAAGCTAACCTGTCTA+AGG | 0.386367 | 1.2:-27598254 | None:intergenic |
| TTTGTGTTGTAGGGTGTTCT+CGG | 0.388366 | 1.2:+27598368 | MS.gene061619:intron |
| TGCTTTGTTGAGCTCTTGAT+AGG | 0.400979 | 1.2:-27591521 | None:intergenic |
| GGGACTTTGCGCCATTGCTC+AGG | 0.406058 | 1.2:+27596421 | MS.gene061619:CDS |
| ATATAGTCATTGAGGTTCAT+AGG | 0.412479 | 1.2:-27593413 | None:intergenic |
| ATCAATGCTTCTGCGGTTGT+AGG | 0.413291 | 1.2:-27593380 | None:intergenic |
| TTATTCTGGTGTTGAAGTTA+GGG | 0.418683 | 1.2:+27595755 | MS.gene061619:CDS |
| TTGAGCTCTTGATAGGACTT+AGG | 0.434259 | 1.2:-27591514 | None:intergenic |
| ACGCTGAGAAGGTCAACAAC+AGG | 0.438336 | 1.2:+27596399 | MS.gene061619:CDS |
| ACCAGAGAGCTTGCTGAAGA+TGG | 0.446072 | 1.2:+27595732 | MS.gene061619:CDS |
| GAGAAAGAGTTTATTTGGGC+AGG | 0.451400 | 1.2:+27591560 | MS.gene061619:CDS |
| AGGTTAAGATCATGCTTGAC+TGG | 0.451430 | 1.2:+27598396 | MS.gene061619:CDS |
| AAAGGAGAAAGAGTTTATTT+GGG | 0.454137 | 1.2:+27591556 | MS.gene061619:CDS |
| TCGGTGGTCTTGCTGTTCGC+AGG | 0.459455 | 1.2:+27596468 | MS.gene061619:CDS |
| CATCAGGCCTGCTGCTGTTG+TGG | 0.461102 | 1.2:+27598499 | MS.gene061619:CDS |
| TGCGCACTGAGATCATCATC+AGG | 0.467489 | 1.2:+27595787 | MS.gene061619:CDS |
| TTGTGATGTATAGGGGAGAA+GGG | 0.467489 | 1.2:+27596305 | MS.gene061619:intron |
| AGGAAGAGGAGGAGTACATC+AGG | 0.468833 | 1.2:+27598483 | MS.gene061619:CDS |
| TCTCTTCGCTACAAGCTTCT+CGG | 0.469720 | 1.2:+27596449 | MS.gene061619:CDS |
| ATTTCTTTCAGGGCCTGCTA+TGG | 0.473754 | 1.2:+27597979 | MS.gene061619:intron |
| GATGTATAGGGGAGAAGGGA+AGG | 0.477057 | 1.2:+27596309 | MS.gene061619:intron |
| ACTCGTACCCAAGCTGTTCT+CGG | 0.490767 | 1.2:+27595813 | MS.gene061619:CDS |
| ACCATCTTCAGCAAGCTCTC+TGG | 0.492594 | 1.2:-27595733 | None:intergenic |
| CTGGGATCCTAAAGGAAAGC+AGG | 0.500050 | 1.2:+27598415 | MS.gene061619:CDS |
| TTTGTGATGTATAGGGGAGA+AGG | 0.500288 | 1.2:+27596304 | MS.gene061619:intron |
| TAAAGCTCAACACTGTTCTC+AGG | 0.503525 | 1.2:-27596377 | None:intergenic |
| GACAGGGACCTCAATATCAT+TGG | 0.510522 | 1.2:-27598522 | None:intergenic |
| GAGACATGTGCTCCTTAGAC+AGG | 0.512478 | 1.2:+27598242 | MS.gene061619:CDS |
| GTAGGGTGTTCTCGGTATCA+AGG | 0.512546 | 1.2:+27598376 | MS.gene061619:intron |
| TCATTGGCCACAACAGCAGC+AGG | 0.512718 | 1.2:-27598506 | None:intergenic |
| TGTTTCTTGTAGTGTAAGCA+TGG | 0.514139 | 1.2:+27591463 | MS.gene061619:intron |
| TGATGATCTCAGTGCGCATA+GGG | 0.514210 | 1.2:-27595782 | None:intergenic |
| CTCTTTGATCAATGCTTCTG+CGG | 0.515475 | 1.2:-27593387 | None:intergenic |
| CATGTGTGTTAGCGAGGAAA+CGG | 0.515881 | 1.2:-27591313 | None:intergenic |
| AAGCATGGGAGCTTGCTGTT+GGG | 0.519143 | 1.2:+27591478 | MS.gene061619:CDS |
| AAACCTCAACACACCATAGC+AGG | 0.520448 | 1.2:-27597992 | None:intergenic |
| TTCTTCTGGACAACCAGTCA+AGG | 0.524528 | 1.2:+27598200 | MS.gene061619:CDS |
| TATTGTCAGTGGAAAATTGA+GGG | 0.525395 | 1.2:+27598134 | MS.gene061619:CDS |
| TGAGTTACCGAGAACAGCTT+GGG | 0.525457 | 1.2:-27595820 | None:intergenic |
| GTATAGGGGAGAAGGGAAGG+AGG | 0.526886 | 1.2:+27596312 | MS.gene061619:intron |
| CACGTGCAGGTTATTGTCAG+TGG | 0.527776 | 1.2:+27598123 | MS.gene061619:intron |
| AAAGCAACAAAAGGTTTCAA+AGG | 0.529675 | 1.2:+27591538 | MS.gene061619:CDS |
| AAATCCATGAAGTTCAAAGA+TGG | 0.529947 | 1.2:+27598168 | MS.gene061619:CDS |
| TTTCTTCGCTGAATTGAATG+AGG | 0.530015 | 1.2:+27595704 | MS.gene061619:CDS |
| GAGCTCAACAAAGCAACAAA+AGG | 0.530800 | 1.2:+27591529 | MS.gene061619:CDS |
| AGAAAGAGTTTATTTGGGCA+GGG | 0.531944 | 1.2:+27591561 | MS.gene061619:CDS |
| TGACCTCAGTTGTGCAGAAG+AGG | 0.532735 | 1.2:+27596345 | MS.gene061619:CDS |
| ATGAGTTACCGAGAACAGCT+TGG | 0.534831 | 1.2:-27595821 | None:intergenic |
| TAAGCATGGGAGCTTGCTGT+TGG | 0.536776 | 1.2:+27591477 | MS.gene061619:CDS |
| TTGAGGTTTGTCATGGAAAG+TGG | 0.550123 | 1.2:+27598006 | MS.gene061619:CDS |
| CGCTGAGAAGGTCAACAACA+GGG | 0.550500 | 1.2:+27596400 | MS.gene061619:CDS |
| GAGTCAATGTAGTCCTTGAC+TGG | 0.552164 | 1.2:-27598213 | None:intergenic |
| AATGCTTCTGCGGTTGTAGG+AGG | 0.554167 | 1.2:-27593377 | None:intergenic |
| ATGCTTGACTGGGATCCTAA+AGG | 0.556783 | 1.2:+27598407 | MS.gene061619:CDS |
| TTGTTGCAGTTCGTCGCTGA+CGG | 0.560423 | 1.2:+27595678 | MS.gene061619:intron |
| ATGATGATCTCAGTGCGCAT+AGG | 0.560609 | 1.2:-27595783 | None:intergenic |
| AAAACGAACCTCACATCCCT+TGG | 0.565171 | 1.2:-27598031 | None:intergenic |
| TTACCGAGGAAATATTTCCT+AGG | 0.567209 | 1.2:-27591284 | None:intergenic |
| TGTCATGGAAAGTGGTGCCA+AGG | 0.570166 | 1.2:+27598014 | MS.gene061619:CDS |
| CTTACCTAGGAAAATTTCCT+CGG | 0.570866 | 1.2:+27591381 | MS.gene061619:CDS |
| GGGCCTGCTATGGTGTGTTG+AGG | 0.572929 | 1.2:+27597989 | MS.gene061619:intron |
| TGTTAGCGAGGAAACGGAGG+TGG | 0.573243 | 1.2:-27591307 | None:intergenic |
| AAACAACGGGGACTGGGACA+GGG | 0.577925 | 1.2:-27598538 | None:intergenic |
| AAGAGACTCAGCCTGAGCAA+TGG | 0.580088 | 1.2:-27596432 | None:intergenic |
| CATTCACACTCCAAAGGAAG+AGG | 0.584530 | 1.2:+27598469 | MS.gene061619:CDS |
| TGGTGTGTTGAGGTTTGTCA+TGG | 0.586163 | 1.2:+27597999 | MS.gene061619:CDS |
| TTATTGTCAGTGGAAAATTG+AGG | 0.586639 | 1.2:+27598133 | MS.gene061619:CDS |
| GTTTCTTGTAGTGTAAGCAT+GGG | 0.586718 | 1.2:+27591464 | MS.gene061619:intron |
| TGTTGAGCTTTACGCTGAGA+AGG | 0.587026 | 1.2:+27596388 | MS.gene061619:CDS |
| TCTGTACCATGTGTTTACCT+AGG | 0.591236 | 1.2:+27591267 | None:intergenic |
| TTACCTAGGAAATATTTCCT+CGG | 0.592722 | 1.2:+27591281 | MS.gene061619:CDS |
| TGTTGTGGCCAATGATATTG+AGG | 0.598745 | 1.2:+27598514 | MS.gene061619:CDS |
| GGTTAAGATCATGCTTGACT+GGG | 0.599204 | 1.2:+27598397 | MS.gene061619:CDS |
| AATGGTGACAATATCAGGGA+GGG | 0.600476 | 1.2:-27598450 | None:intergenic |
| AGCGAGGAAACTGAATTCCT+CGG | 0.607945 | 1.2:+27591418 | MS.gene061619:CDS |
| TGGGATCCTAAAGGAAAGCA+GGG | 0.609284 | 1.2:+27598416 | MS.gene061619:CDS |
| TCACACTCCAAAGGAAGAGG+AGG | 0.628998 | 1.2:+27598472 | MS.gene061619:CDS |
| ACGGTCAAAGAAGCTTACCT+AGG | 0.640852 | 1.2:+27591368 | MS.gene061619:CDS |
| GTCATGGAAAGTGGTGCCAA+GGG | 0.643243 | 1.2:+27598015 | MS.gene061619:CDS |
| TGTGAATGGTGACAATATCA+GGG | 0.645355 | 1.2:-27598454 | None:intergenic |
| GTGTGTTAGCGAGGAAACGG+AGG | 0.646266 | 1.2:-27591310 | None:intergenic |
| AGTCAGCATGTGTGTTAGCG+AGG | 0.650795 | 1.2:-27591319 | None:intergenic |
| GGTATGCATTGTCGTTAGCG+AGG | 0.654253 | 1.2:+27591402 | MS.gene061619:CDS |
| ATGGTGACAATATCAGGGAG+GGG | 0.658335 | 1.2:-27598449 | None:intergenic |
| TGTCACCATTCACACTCCAA+AGG | 0.659904 | 1.2:+27598463 | MS.gene061619:CDS |
| GGAAACGGAGGTGGTTACCG+AGG | 0.668801 | 1.2:-27591298 | None:intergenic |
| GCGCACTGAGATCATCATCA+GGG | 0.670424 | 1.2:+27595788 | MS.gene061619:CDS |
| GAACCTCTTCTGCACAACTG+AGG | 0.678277 | 1.2:-27596348 | None:intergenic |
| GCTGAGAAGGTCAACAACAG+GGG | 0.681641 | 1.2:+27596401 | MS.gene061619:CDS |
| TTTGACCACTGAAAAGCTGA+CGG | 0.683963 | 1.2:-27591346 | None:intergenic |
| AAGTGGTGCCAAGGGATGTG+AGG | 0.685239 | 1.2:+27598023 | MS.gene061619:CDS |
| CTTCGCTACAAGCTTCTCGG+TGG | 0.688232 | 1.2:+27596452 | MS.gene061619:CDS |
| GAATGGTGACAATATCAGGG+AGG | 0.719800 | 1.2:-27598451 | None:intergenic |
| GACCACTGAAAAGCTGACGG+TGG | 0.725760 | 1.2:-27591343 | None:intergenic |
| GATGATCTCAGTGCGCATAG+GGG | 0.725882 | 1.2:-27595781 | None:intergenic |
| ATATTTCCTAGGTAAACACA+TGG | 0.731829 | 1.2:-27591273 | None:intergenic |
| GCTAACGACAATGCATACCG+AGG | 0.734381 | 1.2:-27591398 | None:intergenic |
| AGGACTTAGGAGTATCAATG+TGG | 0.739007 | 1.2:-27591501 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 27591275 | 27598562 | 27591275 | ID=MS.gene061619 |
| chr1.2 | mRNA | 27591275 | 27598562 | 27591275 | ID=MS.gene061619.t1;Parent=MS.gene061619 |
| chr1.2 | exon | 27591275 | 27591439 | 27591275 | ID=MS.gene061619.t1.exon1;Parent=MS.gene061619.t1 |
| chr1.2 | CDS | 27591275 | 27591439 | 27591275 | ID=cds.MS.gene061619.t1;Parent=MS.gene061619.t1 |
| chr1.2 | exon | 27591475 | 27591582 | 27591475 | ID=MS.gene061619.t1.exon2;Parent=MS.gene061619.t1 |
| chr1.2 | CDS | 27591475 | 27591582 | 27591475 | ID=cds.MS.gene061619.t1;Parent=MS.gene061619.t1 |
| chr1.2 | exon | 27593371 | 27593445 | 27593371 | ID=MS.gene061619.t1.exon3;Parent=MS.gene061619.t1 |
| chr1.2 | CDS | 27593371 | 27593445 | 27593371 | ID=cds.MS.gene061619.t1;Parent=MS.gene061619.t1 |
| chr1.2 | exon | 27595687 | 27595834 | 27595687 | ID=MS.gene061619.t1.exon4;Parent=MS.gene061619.t1 |
| chr1.2 | CDS | 27595687 | 27595834 | 27595687 | ID=cds.MS.gene061619.t1;Parent=MS.gene061619.t1 |
| chr1.2 | exon | 27596318 | 27596489 | 27596318 | ID=MS.gene061619.t1.exon5;Parent=MS.gene061619.t1 |
| chr1.2 | CDS | 27596318 | 27596489 | 27596318 | ID=cds.MS.gene061619.t1;Parent=MS.gene061619.t1 |
| chr1.2 | exon | 27597990 | 27598044 | 27597990 | ID=MS.gene061619.t1.exon6;Parent=MS.gene061619.t1 |
| chr1.2 | CDS | 27597990 | 27598044 | 27597990 | ID=cds.MS.gene061619.t1;Parent=MS.gene061619.t1 |
| chr1.2 | exon | 27598132 | 27598263 | 27598132 | ID=MS.gene061619.t1.exon7;Parent=MS.gene061619.t1 |
| chr1.2 | CDS | 27598132 | 27598263 | 27598132 | ID=cds.MS.gene061619.t1;Parent=MS.gene061619.t1 |
| chr1.2 | exon | 27598380 | 27598562 | 27598380 | ID=MS.gene061619.t1.exon8;Parent=MS.gene061619.t1 |
| chr1.2 | CDS | 27598380 | 27598562 | 27598380 | ID=cds.MS.gene061619.t1;Parent=MS.gene061619.t1 |
| Gene Sequence |
| Protein sequence |