Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073885.t1 | RHN77515.1 | 100 | 231 | 0 | 0 | 1 | 231 | 1 | 231 | 7.10E-123 | 449.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073885.t1 | Q9FJA6 | 90.7 | 226 | 21 | 0 | 1 | 226 | 1 | 226 | 2.2e-112 | 406.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073885.t1 | B7FH64 | 100.0 | 231 | 0 | 0 | 1 | 231 | 1 | 231 | 5.1e-123 | 449.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene073885 | MS.gene93153 | PPI |
| MS.gene20081 | MS.gene073885 | PPI |
| MS.gene073885 | MS.gene24232 | PPI |
| MS.gene055644 | MS.gene073885 | PPI |
| MS.gene073885 | MS.gene08126 | PPI |
| MS.gene36891 | MS.gene073885 | PPI |
| MS.gene073885 | MS.gene33653 | PPI |
| MS.gene073885 | MS.gene31853 | PPI |
| MS.gene073885 | MS.gene96480 | PPI |
| MS.gene073885 | MS.gene063717 | PPI |
| MS.gene63685 | MS.gene073885 | PPI |
| MS.gene073885 | MS.gene026677 | PPI |
| MS.gene073885 | MS.gene41083 | PPI |
| MS.gene073885 | MS.gene061619 | PPI |
| MS.gene073885 | MS.gene27265 | PPI |
| MS.gene073885 | MS.gene98228 | PPI |
| MS.gene073885 | MS.gene27003 | PPI |
| MS.gene41081 | MS.gene073885 | PPI |
| MS.gene073885 | MS.gene90723 | PPI |
| MS.gene073885 | MS.gene36891 | PPI |
| MS.gene073885 | MS.gene053439 | PPI |
| MS.gene073885 | MS.gene98229 | PPI |
| MS.gene073885 | MS.gene055646 | PPI |
| MS.gene034801 | MS.gene073885 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073885.t1 | MTR_1g044660 | 100.000 | 231 | 0 | 0 | 1 | 231 | 1 | 231 | 2.08e-171 | 471 |
| MS.gene073885.t1 | MTR_1g023000 | 99.567 | 231 | 1 | 0 | 1 | 231 | 1 | 231 | 7.76e-171 | 469 |
| MS.gene073885.t1 | MTR_6g052140 | 97.357 | 227 | 6 | 0 | 1 | 227 | 1 | 227 | 2.78e-164 | 453 |
| MS.gene073885.t1 | MTR_6g052220 | 97.357 | 227 | 6 | 0 | 1 | 227 | 1 | 227 | 2.78e-164 | 453 |
| MS.gene073885.t1 | MTR_1g111450 | 88.053 | 226 | 27 | 0 | 1 | 226 | 1 | 226 | 2.71e-148 | 412 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073885.t1 | AT5G35530 | 89.912 | 228 | 23 | 0 | 1 | 228 | 1 | 228 | 4.36e-153 | 425 |
| MS.gene073885.t1 | AT2G31610 | 88.987 | 227 | 25 | 0 | 1 | 227 | 1 | 227 | 1.13e-149 | 417 |
| MS.gene073885.t1 | AT3G53870 | 92.166 | 217 | 17 | 0 | 1 | 217 | 1 | 217 | 7.08e-149 | 414 |
Find 78 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGGAAACTTGAACCTCTTC+TGG | 0.246281 | 1.3:-26615821 | None:intergenic |
| TTAGGGCCCTGCTTTCCTTT+AGG | 0.246468 | 1.3:-26617388 | None:intergenic |
| GTTATTCTGGTGTTGAAGTT+AGG | 0.246560 | 1.3:+26615207 | MS.gene073885:CDS |
| GTCCTTAAACTTCATGGATT+TGG | 0.270682 | 1.3:-26617125 | None:intergenic |
| AGCCAAATCCATGAAGTTTA+AGG | 0.287873 | 1.3:+26617123 | MS.gene073885:CDS |
| CTTGCTGAAGATGGTTATTC+TGG | 0.300476 | 1.3:+26615194 | MS.gene073885:CDS |
| ACTTCATGGATTTGGCTCTC+TGG | 0.310391 | 1.3:-26617117 | None:intergenic |
| ATACCCGTCCTTAAACTTCA+TGG | 0.316389 | 1.3:-26617131 | None:intergenic |
| TGCGCACTGAGATCATTATC+AGG | 0.318804 | 1.3:+26615240 | MS.gene073885:CDS |
| GTGTGAATGGTGACAATATC+AGG | 0.336609 | 1.3:-26617421 | None:intergenic |
| CTCTTCCTTTGGAGTGTGAA+TGG | 0.357277 | 1.3:-26617434 | None:intergenic |
| ATGTACTCCTCCTCTTCCTT+TGG | 0.368386 | 1.3:-26617445 | None:intergenic |
| CTTCATGGATTTGGCTCTCT+GGG | 0.375005 | 1.3:-26617116 | None:intergenic |
| TTTGTGTTGTAGGGTGTTCT+CGG | 0.388366 | 1.3:+26617334 | MS.gene073885:intron |
| TAAACTAACTAACCTGTCTA+AGG | 0.395840 | 1.3:-26617213 | None:intergenic |
| GAGTCAATGTAATCCTTAAC+AGG | 0.402767 | 1.3:-26617172 | None:intergenic |
| TTATTCTGGTGTTGAAGTTA+GGG | 0.418683 | 1.3:+26615208 | MS.gene073885:CDS |
| GGGACTTTGCGCCATTGCTC+AGG | 0.427213 | 1.3:+26615884 | MS.gene073885:CDS |
| ACGCTGAGAAGGTCAACAAC+AGG | 0.438336 | 1.3:+26615862 | MS.gene073885:CDS |
| TTTGTGATGTATAGGTGAAA+AGG | 0.439508 | 1.3:+26615767 | MS.gene073885:intron |
| AGGTTAAGATCATGCTTGAC+TGG | 0.451430 | 1.3:+26617362 | MS.gene073885:CDS |
| CATCAGGCCTGCTGCTGTTG+TGG | 0.461102 | 1.3:+26617465 | MS.gene073885:CDS |
| ACAAGAGAGCTTGCTGAAGA+TGG | 0.463095 | 1.3:+26615185 | MS.gene073885:CDS |
| TTGTGATGTATAGGTGAAAA+GGG | 0.465106 | 1.3:+26615768 | MS.gene073885:intron |
| CTCGTCCGGACAACCTGTTA+AGG | 0.466411 | 1.3:+26617159 | MS.gene073885:CDS |
| AGGAAGAGGAGGAGTACATC+AGG | 0.468833 | 1.3:+26617449 | MS.gene073885:CDS |
| ATTTCTTTCAGGGCCTGCTA+TGG | 0.473754 | 1.3:+26616937 | MS.gene073885:intron |
| ACTCGTACCCAAGCTGTTCT+CGG | 0.490767 | 1.3:+26615266 | MS.gene073885:CDS |
| TCGGAGGTCTTGCTGTTCGC+AGG | 0.494676 | 1.3:+26615931 | MS.gene073885:CDS |
| GACAGGAACCTCAATATCAT+TGG | 0.498151 | 1.3:-26617488 | None:intergenic |
| CTGGGATCCTAAAGGAAAGC+AGG | 0.500050 | 1.3:+26617381 | MS.gene073885:CDS |
| GTAATCCTTAACAGGTTGTC+CGG | 0.503308 | 1.3:-26617164 | None:intergenic |
| TAAAGCTCAACACTGTTCTC+AGG | 0.503525 | 1.3:-26615840 | None:intergenic |
| GTAGGGTGTTCTCGGTATCA+AGG | 0.512546 | 1.3:+26617342 | MS.gene073885:intron |
| TCATTGGCCACAACAGCAGC+AGG | 0.512718 | 1.3:-26617472 | None:intergenic |
| CAGACATGTTCTCCTTAGAC+AGG | 0.518852 | 1.3:+26617201 | MS.gene073885:CDS |
| TAATGATCTCAGTGCGCATA+GGG | 0.519398 | 1.3:-26615235 | None:intergenic |
| AAACCTCAACACACCATAGC+AGG | 0.520448 | 1.3:-26616950 | None:intergenic |
| GACGGGTATATGATCTCGTC+CGG | 0.524013 | 1.3:+26617145 | MS.gene073885:CDS |
| TATTGTCAGTGGAAAATTGA+GGG | 0.525395 | 1.3:+26617093 | MS.gene073885:CDS |
| TGAGTTACCGAGAACAGCTT+GGG | 0.525457 | 1.3:-26615273 | None:intergenic |
| AAGAGACTCGGCCTGAGCAA+TGG | 0.529687 | 1.3:-26615895 | None:intergenic |
| ATGAGTTACCGAGAACAGCT+TGG | 0.534831 | 1.3:-26615274 | None:intergenic |
| CATGTGCAGGTTATTGTCAG+TGG | 0.538199 | 1.3:+26617082 | MS.gene073885:intron |
| AAAACAAACCTCGCATCCCT+TGG | 0.539366 | 1.3:-26616989 | None:intergenic |
| TTGAGGTTTGTCATGGAAAG+TGG | 0.550123 | 1.3:+26616964 | MS.gene073885:CDS |
| CGCTGAGAAGGTCAACAACA+GGG | 0.550500 | 1.3:+26615863 | MS.gene073885:CDS |
| ATGCTTGACTGGGATCCTAA+AGG | 0.556783 | 1.3:+26617373 | MS.gene073885:CDS |
| TGTTGTGGCCAATGATATTG+AGG | 0.558726 | 1.3:+26617480 | MS.gene073885:CDS |
| ATAATGATCTCAGTGCGCAT+AGG | 0.560332 | 1.3:-26615236 | None:intergenic |
| TTGTTGCAGTTCGTCGCTGA+CGG | 0.560423 | 1.3:+26615131 | MS.gene073885:intron |
| AATCCATGAAGTTTAAGGAC+GGG | 0.568256 | 1.3:+26617128 | MS.gene073885:CDS |
| TGACCTCAGTTGTCCAGAAG+AGG | 0.568574 | 1.3:+26615808 | MS.gene073885:CDS |
| TGTCATGGAAAGTGGTGCCA+AGG | 0.570166 | 1.3:+26616972 | MS.gene073885:CDS |
| GGGCCTGCTATGGTGTGTTG+AGG | 0.572929 | 1.3:+26616947 | MS.gene073885:intron |
| CATTCACACTCCAAAGGAAG+AGG | 0.584530 | 1.3:+26617435 | MS.gene073885:CDS |
| TGGTGTGTTGAGGTTTGTCA+TGG | 0.586163 | 1.3:+26616957 | MS.gene073885:CDS |
| TTATTGTCAGTGGAAAATTG+AGG | 0.586639 | 1.3:+26617092 | MS.gene073885:CDS |
| TGTTGAGCTTTACGCTGAGA+AGG | 0.587026 | 1.3:+26615851 | MS.gene073885:CDS |
| GATGTATAGGTGAAAAGGGA+AGG | 0.595961 | 1.3:+26615772 | MS.gene073885:intron |
| GGTTAAGATCATGCTTGACT+GGG | 0.599204 | 1.3:+26617363 | MS.gene073885:CDS |
| AATGGTGACAATATCAGGGA+GGG | 0.600476 | 1.3:-26617416 | None:intergenic |
| TGGGATCCTAAAGGAAAGCA+GGG | 0.609284 | 1.3:+26617382 | MS.gene073885:CDS |
| TCTCTTCGCTACAAGCTGCT+CGG | 0.609578 | 1.3:+26615912 | MS.gene073885:CDS |
| CAGCTTGTAGCGAAGAGACT+CGG | 0.624600 | 1.3:-26615907 | None:intergenic |
| TCACACTCCAAAGGAAGAGG+AGG | 0.628998 | 1.3:+26617438 | MS.gene073885:CDS |
| GCGCACTGAGATCATTATCA+GGG | 0.630342 | 1.3:+26615241 | MS.gene073885:CDS |
| AAATCCATGAAGTTTAAGGA+CGG | 0.630532 | 1.3:+26617127 | MS.gene073885:CDS |
| GTCATGGAAAGTGGTGCCAA+GGG | 0.643243 | 1.3:+26616973 | MS.gene073885:CDS |
| TGTGAATGGTGACAATATCA+GGG | 0.645355 | 1.3:-26617420 | None:intergenic |
| AAGTGGTGCCAAGGGATGCG+AGG | 0.645586 | 1.3:+26616981 | MS.gene073885:CDS |
| ATGGTGACAATATCAGGGAG+GGG | 0.658335 | 1.3:-26617415 | None:intergenic |
| TGTCACCATTCACACTCCAA+AGG | 0.659904 | 1.3:+26617429 | MS.gene073885:CDS |
| CTTCGCTACAAGCTGCTCGG+AGG | 0.669048 | 1.3:+26615915 | MS.gene073885:CDS |
| GCTGAGAAGGTCAACAACAG+GGG | 0.681641 | 1.3:+26615864 | MS.gene073885:CDS |
| GAACCTCTTCTGGACAACTG+AGG | 0.690827 | 1.3:-26615811 | None:intergenic |
| GAATGGTGACAATATCAGGG+AGG | 0.719800 | 1.3:-26617417 | None:intergenic |
| AATGATCTCAGTGCGCATAG+GGG | 0.731070 | 1.3:-26615234 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTATTTTTGTTTCATTTT+GGG | + | chr1.3:26615320-26615339 | MS.gene073885:intron | 10.0% |
| !! | AAAGGAAAATTGAAATATAT+CGG | - | chr1.3:26616821-26616840 | None:intergenic | 15.0% |
| !! | ATATATGAAATTGTTATGTA+TGG | + | chr1.3:26615483-26615502 | MS.gene073885:intron | 15.0% |
| !! | TTTCAAAGTTAAATGTTATT+AGG | + | chr1.3:26616030-26616049 | MS.gene073885:intron | 15.0% |
| !!! | ATATGATTTGTGTTTTATTT+TGG | + | chr1.3:26615741-26615760 | MS.gene073885:intron | 15.0% |
| !!! | ATGATAATGATTTTTTACTT+GGG | + | chr1.3:26615562-26615581 | MS.gene073885:intron | 15.0% |
| !!! | GATTTATTTTTGTTTCATTT+TGG | + | chr1.3:26615319-26615338 | MS.gene073885:intron | 15.0% |
| !!! | TATGATAATGATTTTTTACT+TGG | + | chr1.3:26615561-26615580 | MS.gene073885:intron | 15.0% |
| !!! | TATGATTTGTGTTTTATTTT+GGG | + | chr1.3:26615742-26615761 | MS.gene073885:intron | 15.0% |
| !!! | TATTATGTTTGTTTTGATTT+TGG | + | chr1.3:26615696-26615715 | MS.gene073885:intron | 15.0% |
| !!! | TCTTAATTCTTAATTTGATT+TGG | + | chr1.3:26615102-26615121 | MS.gene073885:intron | 15.0% |
| !! | AAGGAAAATTGAAATATATC+GGG | - | chr1.3:26616820-26616839 | None:intergenic | 20.0% |
| !! | AATAACATTGGAATAAAAAG+AGG | - | chr1.3:26616647-26616666 | None:intergenic | 20.0% |
| !! | ATGTTATTAGGAGAAATAAT+TGG | + | chr1.3:26616042-26616061 | MS.gene073885:intron | 20.0% |
| !! | TAGCTAAACATAAACAAATA+TGG | - | chr1.3:26616100-26616119 | None:intergenic | 20.0% |
| !! | TATTCGAGAGAATAATAAAT+GGG | - | chr1.3:26616883-26616902 | None:intergenic | 20.0% |
| !! | TATTTGTTTATGTTTAGCTA+TGG | + | chr1.3:26616100-26616119 | MS.gene073885:intron | 20.0% |
| !! | TCATTATCATACAAAATTAG+AGG | - | chr1.3:26615552-26615571 | None:intergenic | 20.0% |
| !! | TCATTATCATACATATTGAA+AGG | - | chr1.3:26615647-26615666 | None:intergenic | 20.0% |
| !! | TTACAACTAAAAATCATTAC+AGG | - | chr1.3:26617053-26617072 | None:intergenic | 20.0% |
| !!! | AACATTTTAAGAAGCTAAAA+TGG | - | chr1.3:26616140-26616159 | None:intergenic | 20.0% |
| !!! | ACATTTTAAGAAGCTAAAAT+GGG | - | chr1.3:26616139-26616158 | None:intergenic | 20.0% |
| !!! | AGAAAATTAGTCTAAAGAAA+TGG | - | chr1.3:26616491-26616510 | None:intergenic | 20.0% |
| !!! | TATTTCAATTTTCCTTTTAC+TGG | + | chr1.3:26616824-26616843 | MS.gene073885:intron | 20.0% |
| !!! | TTTTGGAGATTATATGTTTT+GGG | + | chr1.3:26616767-26616786 | MS.gene073885:intron | 20.0% |
| !!! | TTTTGTTCTTGTTTTGTTTT+GGG | + | chr1.3:26615449-26615468 | MS.gene073885:intron | 20.0% |
| !!! | TTTTTGGAGATTATATGTTT+TGG | + | chr1.3:26616766-26616785 | MS.gene073885:intron | 20.0% |
| !!! | TTTTTGTTCTTGTTTTGTTT+TGG | + | chr1.3:26615448-26615467 | MS.gene073885:intron | 20.0% |
| ! | CATTAGTAATAGAGATGAAT+TGG | - | chr1.3:26615079-26615098 | None:intergenic | 25.0% |
| ! | GTATTCGAGAGAATAATAAA+TGG | - | chr1.3:26616884-26616903 | None:intergenic | 25.0% |
| ! | TAGGAAAAAGAAAGCAAATA+AGG | - | chr1.3:26617250-26617269 | None:intergenic | 25.0% |
| ! | TTATCATACCATACATCATA+AGG | - | chr1.3:26615424-26615443 | None:intergenic | 25.0% |
| !! | GATTAGTCAACAAATAACAT+TGG | - | chr1.3:26616659-26616678 | None:intergenic | 25.0% |
| !!! | TAACATGGTGATTTACTTTT+TGG | + | chr1.3:26616750-26616769 | MS.gene073885:intron | 25.0% |
| !!! | TGTTTTTCAGAATAAAGAGA+TGG | - | chr1.3:26616532-26616551 | None:intergenic | 25.0% |
| !!! | TTGTAGACTCTTTTTTAAAG+AGG | + | chr1.3:26616305-26616324 | MS.gene073885:intron | 25.0% |
| !!! | TTGTTTTTCCTTATGATGTA+TGG | + | chr1.3:26615413-26615432 | MS.gene073885:intron | 25.0% |
| AAAGAAATGGTAAAGTCACA+TGG | - | chr1.3:26616478-26616497 | None:intergenic | 30.0% | |
| AAATCCATGAAGTTTAAGGA+CGG | + | chr1.3:26617127-26617146 | MS.gene073885:CDS | 30.0% | |
| AATATATCGGGTACAAAAAG+AGG | - | chr1.3:26616808-26616827 | None:intergenic | 30.0% | |
| ACATAGCAAACATAAAACAC+AGG | - | chr1.3:26616602-26616621 | None:intergenic | 30.0% | |
| ATATATCGGGTACAAAAAGA+GGG | - | chr1.3:26616807-26616826 | None:intergenic | 30.0% | |
| CAACACATACTCATGTTAAA+TGG | + | chr1.3:26616705-26616724 | MS.gene073885:intron | 30.0% | |
| TAAACTAACTAACCTGTCTA+AGG | - | chr1.3:26617216-26617235 | None:intergenic | 30.0% | |
| TATTGTCAGTGGAAAATTGA+GGG | + | chr1.3:26617093-26617112 | MS.gene073885:CDS | 30.0% | |
| TTATTGTCAGTGGAAAATTG+AGG | + | chr1.3:26617092-26617111 | MS.gene073885:CDS | 30.0% | |
| TTGTGATGTATAGGTGAAAA+GGG | + | chr1.3:26615768-26615787 | MS.gene073885:intron | 30.0% | |
| TTGTTTATGTTTAGCTATGG+TGG | + | chr1.3:26616103-26616122 | MS.gene073885:intron | 30.0% | |
| TTTCCTACAACATTTCATGT+TGG | + | chr1.3:26617263-26617282 | MS.gene073885:intron | 30.0% | |
| TTTGTGATGTATAGGTGAAA+AGG | + | chr1.3:26615767-26615786 | MS.gene073885:intron | 30.0% | |
| ! | AAAAAGAGGGATTTAAGATG+TGG | - | chr1.3:26616794-26616813 | None:intergenic | 30.0% |
| ! | GTCTCTAACTATTTCTTTCA+GGG | + | chr1.3:26616927-26616946 | MS.gene073885:intron | 30.0% |
| ! | TGTCTCTAACTATTTCTTTC+AGG | + | chr1.3:26616926-26616945 | MS.gene073885:intron | 30.0% |
| ! | TTATTCTGGTGTTGAAGTTA+GGG | + | chr1.3:26615208-26615227 | MS.gene073885:CDS | 30.0% |
| ! | TTTCATGTTGGTTGTTCATT+TGG | + | chr1.3:26617275-26617294 | MS.gene073885:intron | 30.0% |
| !! | AACTTTTAATTACCACCCAT+TGG | - | chr1.3:26616859-26616878 | None:intergenic | 30.0% |
| !! | GTTGTTCATTTGGTTTGTTA+TGG | + | chr1.3:26617285-26617304 | MS.gene073885:intron | 30.0% |
| !! | TTTGGGTTTTTGTGATGTAT+AGG | + | chr1.3:26615759-26615778 | MS.gene073885:intron | 30.0% |
| AATCCATGAAGTTTAAGGAC+GGG | + | chr1.3:26617128-26617147 | MS.gene073885:CDS | 35.0% | |
| AGCCAAATCCATGAAGTTTA+AGG | + | chr1.3:26617123-26617142 | MS.gene073885:CDS | 35.0% | |
| AGGGACTCATAAAGCATATA+AGG | - | chr1.3:26616400-26616419 | None:intergenic | 35.0% | |
| CAACCAACATGAAATGTTGT+AGG | - | chr1.3:26617269-26617288 | None:intergenic | 35.0% | |
| CAGGAAACAGTATAACAAAC+AGG | - | chr1.3:26617034-26617053 | None:intergenic | 35.0% | |
| GAGTCAATGTAATCCTTAAC+AGG | - | chr1.3:26617175-26617194 | None:intergenic | 35.0% | |
| GTCCTTAAACTTCATGGATT+TGG | - | chr1.3:26617128-26617147 | None:intergenic | 35.0% | |
| TACTGGTGTGTATTTCCAAT+GGG | + | chr1.3:26616841-26616860 | MS.gene073885:intron | 35.0% | |
| TGGAAATACACACCAGTAAA+AGG | - | chr1.3:26616839-26616858 | None:intergenic | 35.0% | |
| TGTGAATGGTGACAATATCA+GGG | - | chr1.3:26617423-26617442 | None:intergenic | 35.0% | |
| TTACTGGTGTGTATTTCCAA+TGG | + | chr1.3:26616840-26616859 | MS.gene073885:intron | 35.0% | |
| TTTCAATGTCACCCTAAGTA+GGG | - | chr1.3:26616419-26616438 | None:intergenic | 35.0% | |
| TTTGTGTCCTTTGTGTTGTA+GGG | + | chr1.3:26617325-26617344 | MS.gene073885:intron | 35.0% | |
| ! | ACTATGTTGCGCATTTTTCT+TGG | + | chr1.3:26616333-26616352 | MS.gene073885:intron | 35.0% |
| ! | AGTCTGCAACTTTTGTAACA+TGG | + | chr1.3:26616735-26616754 | MS.gene073885:intron | 35.0% |
| ! | CTATGTTGCGCATTTTTCTT+GGG | + | chr1.3:26616334-26616353 | MS.gene073885:intron | 35.0% |
| ! | GTTATTCTGGTGTTGAAGTT+AGG | + | chr1.3:26615207-26615226 | MS.gene073885:CDS | 35.0% |
| ! | TATGTTGCGCATTTTTCTTG+GGG | + | chr1.3:26616335-26616354 | MS.gene073885:intron | 35.0% |
| ! | TTTTCAATGTCACCCTAAGT+AGG | - | chr1.3:26616420-26616439 | None:intergenic | 35.0% |
| ! | TTTTGTGTCCTTTGTGTTGT+AGG | + | chr1.3:26617324-26617343 | MS.gene073885:intron | 35.0% |
| !!! | CTTTCGCTTTTTGCTCATTT+GGG | - | chr1.3:26615025-26615044 | None:intergenic | 35.0% |
| AAATGGTAAAGTCACATGGC+TGG | - | chr1.3:26616474-26616493 | None:intergenic | 40.0% | |
| AATGGTGACAATATCAGGGA+GGG | - | chr1.3:26617419-26617438 | None:intergenic | 40.0% | |
| AGGTTAAGATCATGCTTGAC+TGG | + | chr1.3:26617362-26617381 | MS.gene073885:CDS | 40.0% | |
| ATAATGATCTCAGTGCGCAT+AGG | - | chr1.3:26615239-26615258 | None:intergenic | 40.0% | |
| ATACCCGTCCTTAAACTTCA+TGG | - | chr1.3:26617134-26617153 | None:intergenic | 40.0% | |
| CCAAATGAGCAAAAAGCGAA+AGG | + | chr1.3:26615023-26615042 | MS.gene073885:CDS | 40.0% | |
| CTTGCTGAAGATGGTTATTC+TGG | + | chr1.3:26615194-26615213 | MS.gene073885:CDS | 40.0% | |
| GATGTATAGGTGAAAAGGGA+AGG | + | chr1.3:26615772-26615791 | MS.gene073885:intron | 40.0% | |
| GCTTTATGAGTCCCTACTTA+GGG | + | chr1.3:26616405-26616424 | MS.gene073885:intron | 40.0% | |
| GGTTAAGATCATGCTTGACT+GGG | + | chr1.3:26617363-26617382 | MS.gene073885:CDS | 40.0% | |
| GTAATCCTTAACAGGTTGTC+CGG | - | chr1.3:26617167-26617186 | None:intergenic | 40.0% | |
| GTGTGAATGGTGACAATATC+AGG | - | chr1.3:26617424-26617443 | None:intergenic | 40.0% | |
| TAAAGCTCAACACTGTTCTC+AGG | - | chr1.3:26615843-26615862 | None:intergenic | 40.0% | |
| TAATGATCTCAGTGCGCATA+GGG | - | chr1.3:26615238-26615257 | None:intergenic | 40.0% | |
| TCAAAGCTGTCTACGATGAT+TGG | + | chr1.3:26616237-26616256 | MS.gene073885:intron | 40.0% | |
| TGCTTTATGAGTCCCTACTT+AGG | + | chr1.3:26616404-26616423 | MS.gene073885:intron | 40.0% | |
| TTGAGGTTTGTCATGGAAAG+TGG | + | chr1.3:26616964-26616983 | MS.gene073885:CDS | 40.0% | |
| ! | TTTGTGTTGTAGGGTGTTCT+CGG | + | chr1.3:26617334-26617353 | MS.gene073885:intron | 40.0% |
| !! | GTAATTGCTGTTTCATGTGC+AGG | + | chr1.3:26617069-26617088 | MS.gene073885:intron | 40.0% |
| !!! | CCTTTCGCTTTTTGCTCATT+TGG | - | chr1.3:26615026-26615045 | None:intergenic | 40.0% |
| AAAACAAACCTCGCATCCCT+TGG | - | chr1.3:26616992-26617011 | None:intergenic | 45.0% | |
| AAACCTCAACACACCATAGC+AGG | - | chr1.3:26616953-26616972 | None:intergenic | 45.0% | |
| AATGATCTCAGTGCGCATAG+GGG | - | chr1.3:26615237-26615256 | None:intergenic | 45.0% | |
| ATGAGTTACCGAGAACAGCT+TGG | - | chr1.3:26615277-26615296 | None:intergenic | 45.0% | |
| ATGCTTGACTGGGATCCTAA+AGG | + | chr1.3:26617373-26617392 | MS.gene073885:CDS | 45.0% | |
| ATGGTGACAATATCAGGGAG+GGG | - | chr1.3:26617418-26617437 | None:intergenic | 45.0% | |
| ATGTACTCCTCCTCTTCCTT+TGG | - | chr1.3:26617448-26617467 | None:intergenic | 45.0% | |
| ATTTCTTTCAGGGCCTGCTA+TGG | + | chr1.3:26616937-26616956 | MS.gene073885:intron | 45.0% | |
| CAGACATGTTCTCCTTAGAC+AGG | + | chr1.3:26617201-26617220 | MS.gene073885:CDS | 45.0% | |
| CAGGAAACTTGAACCTCTTC+TGG | - | chr1.3:26615824-26615843 | None:intergenic | 45.0% | |
| CATGTGCAGGTTATTGTCAG+TGG | + | chr1.3:26617082-26617101 | MS.gene073885:intron | 45.0% | |
| CATTCACACTCCAAAGGAAG+AGG | + | chr1.3:26617435-26617454 | MS.gene073885:CDS | 45.0% | |
| GAATGGTGACAATATCAGGG+AGG | - | chr1.3:26617420-26617439 | None:intergenic | 45.0% | |
| GAGAACACCCTACAACACAA+AGG | - | chr1.3:26617335-26617354 | None:intergenic | 45.0% | |
| GCGCACTGAGATCATTATCA+GGG | + | chr1.3:26615241-26615260 | MS.gene073885:CDS | 45.0% | |
| TGAGTTACCGAGAACAGCTT+GGG | - | chr1.3:26615276-26615295 | None:intergenic | 45.0% | |
| TGCGCACTGAGATCATTATC+AGG | + | chr1.3:26615240-26615259 | MS.gene073885:CDS | 45.0% | |
| TGGGATCCTAAAGGAAAGCA+GGG | + | chr1.3:26617382-26617401 | MS.gene073885:CDS | 45.0% | |
| TGGTGTGTATTTCCAATGGG+TGG | + | chr1.3:26616844-26616863 | MS.gene073885:intron | 45.0% | |
| TGGTGTGTTGAGGTTTGTCA+TGG | + | chr1.3:26616957-26616976 | MS.gene073885:CDS | 45.0% | |
| TGTCACCATTCACACTCCAA+AGG | + | chr1.3:26617429-26617448 | MS.gene073885:CDS | 45.0% | |
| TGTTGAGCTTTACGCTGAGA+AGG | + | chr1.3:26615851-26615870 | MS.gene073885:CDS | 45.0% | |
| ! | ATATCAGGGAGGGGAGTTTT+AGG | - | chr1.3:26617409-26617428 | None:intergenic | 45.0% |
| ! | TATCAGGGAGGGGAGTTTTA+GGG | - | chr1.3:26617408-26617427 | None:intergenic | 45.0% |
| !! | ACAAGAGAGCTTGCTGAAGA+TGG | + | chr1.3:26615185-26615204 | MS.gene073885:CDS | 45.0% |
| !! | ACTTCATGGATTTGGCTCTC+TGG | - | chr1.3:26617120-26617139 | None:intergenic | 45.0% |
| !! | CTCTTCCTTTGGAGTGTGAA+TGG | - | chr1.3:26617437-26617456 | None:intergenic | 45.0% |
| !! | CTTCATGGATTTGGCTCTCT+GGG | - | chr1.3:26617119-26617138 | None:intergenic | 45.0% |
| ACGCTGAGAAGGTCAACAAC+AGG | + | chr1.3:26615862-26615881 | MS.gene073885:CDS | 50.0% | |
| ACTCGTACCCAAGCTGTTCT+CGG | + | chr1.3:26615266-26615285 | MS.gene073885:CDS | 50.0% | |
| CAGCTTGTAGCGAAGAGACT+CGG | - | chr1.3:26615910-26615929 | None:intergenic | 50.0% | |
| CGCTGAGAAGGTCAACAACA+GGG | + | chr1.3:26615863-26615882 | MS.gene073885:CDS | 50.0% | |
| CTGGGATCCTAAAGGAAAGC+AGG | + | chr1.3:26617381-26617400 | MS.gene073885:CDS | 50.0% | |
| GAACCTCTTCTGGACAACTG+AGG | - | chr1.3:26615814-26615833 | None:intergenic | 50.0% | |
| GACGGGTATATGATCTCGTC+CGG | + | chr1.3:26617145-26617164 | MS.gene073885:CDS | 50.0% | |
| GCTGAGAAGGTCAACAACAG+GGG | + | chr1.3:26615864-26615883 | MS.gene073885:CDS | 50.0% | |
| TCACACTCCAAAGGAAGAGG+AGG | + | chr1.3:26617438-26617457 | MS.gene073885:CDS | 50.0% | |
| TCTCTTCGCTACAAGCTGCT+CGG | + | chr1.3:26615912-26615931 | MS.gene073885:CDS | 50.0% | |
| TGACCTCAGTTGTCCAGAAG+AGG | + | chr1.3:26615808-26615827 | MS.gene073885:CDS | 50.0% | |
| TTAGGGCCCTGCTTTCCTTT+AGG | - | chr1.3:26617391-26617410 | None:intergenic | 50.0% | |
| TTGTTGCAGTTCGTCGCTGA+CGG | + | chr1.3:26615131-26615150 | MS.gene073885:intron | 50.0% | |
| ! | AGGAAGAGGAGGAGTACATC+AGG | + | chr1.3:26617449-26617468 | MS.gene073885:CDS | 50.0% |
| ! | GTAGGGTGTTCTCGGTATCA+AGG | + | chr1.3:26617342-26617361 | MS.gene073885:intron | 50.0% |
| ! | GTCATGGAAAGTGGTGCCAA+GGG | + | chr1.3:26616973-26616992 | MS.gene073885:CDS | 50.0% |
| ! | TGTCATGGAAAGTGGTGCCA+AGG | + | chr1.3:26616972-26616991 | MS.gene073885:CDS | 50.0% |
| AAGAGACTCGGCCTGAGCAA+TGG | - | chr1.3:26615898-26615917 | None:intergenic | 55.0% | |
| CTCGTCCGGACAACCTGTTA+AGG | + | chr1.3:26617159-26617178 | MS.gene073885:CDS | 55.0% | |
| TCATTGGCCACAACAGCAGC+AGG | - | chr1.3:26617475-26617494 | None:intergenic | 55.0% | |
| CATCAGGCCTGCTGCTGTTG+TGG | + | chr1.3:26617465-26617484 | MS.gene073885:CDS | 60.0% | |
| CTTCGCTACAAGCTGCTCGG+AGG | + | chr1.3:26615915-26615934 | MS.gene073885:CDS | 60.0% | |
| GGGACTTTGCGCCATTGCTC+AGG | + | chr1.3:26615884-26615903 | MS.gene073885:CDS | 60.0% | |
| GGGCCTGCTATGGTGTGTTG+AGG | + | chr1.3:26616947-26616966 | MS.gene073885:intron | 60.0% | |
| ! | AAGTGGTGCCAAGGGATGCG+AGG | + | chr1.3:26616981-26617000 | MS.gene073885:CDS | 60.0% |
| !! | TCGGAGGTCTTGCTGTTCGC+AGG | + | chr1.3:26615931-26615950 | MS.gene073885:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 26615015 | 26617501 | 26615015 | ID=MS.gene073885 |
| chr1.3 | mRNA | 26615015 | 26617501 | 26615015 | ID=MS.gene073885.t1;Parent=MS.gene073885 |
| chr1.3 | exon | 26615015 | 26615044 | 26615015 | ID=MS.gene073885.t1.exon1;Parent=MS.gene073885.t1 |
| chr1.3 | CDS | 26615015 | 26615044 | 26615015 | ID=cds.MS.gene073885.t1;Parent=MS.gene073885.t1 |
| chr1.3 | exon | 26615140 | 26615287 | 26615140 | ID=MS.gene073885.t1.exon2;Parent=MS.gene073885.t1 |
| chr1.3 | CDS | 26615140 | 26615287 | 26615140 | ID=cds.MS.gene073885.t1;Parent=MS.gene073885.t1 |
| chr1.3 | exon | 26615781 | 26615952 | 26615781 | ID=MS.gene073885.t1.exon3;Parent=MS.gene073885.t1 |
| chr1.3 | CDS | 26615781 | 26615952 | 26615781 | ID=cds.MS.gene073885.t1;Parent=MS.gene073885.t1 |
| chr1.3 | exon | 26616948 | 26617002 | 26616948 | ID=MS.gene073885.t1.exon4;Parent=MS.gene073885.t1 |
| chr1.3 | CDS | 26616948 | 26617002 | 26616948 | ID=cds.MS.gene073885.t1;Parent=MS.gene073885.t1 |
| chr1.3 | exon | 26617091 | 26617222 | 26617091 | ID=MS.gene073885.t1.exon5;Parent=MS.gene073885.t1 |
| chr1.3 | CDS | 26617091 | 26617222 | 26617091 | ID=cds.MS.gene073885.t1;Parent=MS.gene073885.t1 |
| chr1.3 | exon | 26617346 | 26617501 | 26617346 | ID=MS.gene073885.t1.exon6;Parent=MS.gene073885.t1 |
| chr1.3 | CDS | 26617346 | 26617501 | 26617346 | ID=cds.MS.gene073885.t1;Parent=MS.gene073885.t1 |
| Gene Sequence |
| Protein sequence |
