Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24232.t1 | XP_003590123.1 | 100 | 239 | 0 | 0 | 1 | 239 | 1 | 239 | 1.40E-126 | 462.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24232.t1 | Q9FJA6 | 88.8 | 233 | 26 | 0 | 1 | 233 | 1 | 233 | 1.3e-112 | 407.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24232.t1 | B7FH64 | 100.0 | 239 | 0 | 0 | 1 | 239 | 1 | 239 | 1.0e-126 | 462.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049387 | MS.gene24232 | 0.805129 | 1.55E-49 | -1.69E-46 |
| MS.gene050134 | MS.gene24232 | 0.886388 | 3.57E-72 | -1.69E-46 |
| MS.gene050791 | MS.gene24232 | 0.853846 | 1.82E-61 | -1.69E-46 |
| MS.gene051904 | MS.gene24232 | 0.844235 | 8.57E-59 | -1.69E-46 |
| MS.gene052664 | MS.gene24232 | 0.88446 | 1.88E-71 | -1.69E-46 |
| MS.gene052666 | MS.gene24232 | 0.820796 | 5.68E-53 | -1.69E-46 |
| MS.gene053224 | MS.gene24232 | 0.869345 | 3.32E-66 | -1.69E-46 |
| MS.gene057272 | MS.gene24232 | 0.873514 | 1.39E-67 | -1.69E-46 |
| MS.gene057641 | MS.gene24232 | 0.81899 | 1.47E-52 | -1.69E-46 |
| MS.gene057643 | MS.gene24232 | 0.856873 | 2.40E-62 | -1.69E-46 |
| MS.gene060483 | MS.gene24232 | 0.817663 | 2.93E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene36891 | MS.gene24232 | PPI |
| MS.gene24232 | MS.gene08126 | PPI |
| MS.gene24232 | MS.gene33653 | PPI |
| MS.gene073885 | MS.gene24232 | PPI |
| MS.gene63685 | MS.gene24232 | PPI |
| MS.gene24232 | MS.gene31853 | PPI |
| MS.gene026677 | MS.gene24232 | PPI |
| MS.gene24232 | MS.gene96480 | PPI |
| MS.gene061619 | MS.gene24232 | PPI |
| MS.gene41083 | MS.gene24232 | PPI |
| MS.gene27003 | MS.gene24232 | PPI |
| MS.gene24232 | MS.gene27265 | PPI |
| MS.gene93153 | MS.gene24232 | PPI |
| MS.gene20081 | MS.gene24232 | PPI |
| MS.gene24232 | MS.gene98228 | PPI |
| MS.gene41081 | MS.gene24232 | PPI |
| MS.gene24232 | MS.gene90723 | PPI |
| MS.gene24232 | MS.gene053439 | PPI |
| MS.gene24232 | MS.gene98229 | PPI |
| MS.gene034801 | MS.gene24232 | PPI |
| MS.gene24232 | MS.gene055646 | PPI |
| MS.gene24232 | MS.gene063717 | PPI |
| MS.gene055644 | MS.gene24232 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24232.t1 | MTR_1g044660 | 100.000 | 239 | 0 | 0 | 1 | 239 | 1 | 239 | 3.63e-177 | 486 |
| MS.gene24232.t1 | MTR_1g023000 | 99.163 | 239 | 2 | 0 | 1 | 239 | 1 | 239 | 2.37e-176 | 484 |
| MS.gene24232.t1 | MTR_6g052140 | 94.538 | 238 | 8 | 1 | 1 | 238 | 1 | 233 | 6.51e-166 | 457 |
| MS.gene24232.t1 | MTR_6g052220 | 94.538 | 238 | 8 | 1 | 1 | 238 | 1 | 233 | 6.51e-166 | 457 |
| MS.gene24232.t1 | MTR_1g111450 | 86.383 | 235 | 31 | 1 | 1 | 234 | 1 | 235 | 5.09e-150 | 417 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24232.t1 | AT5G35530 | 88.841 | 233 | 26 | 0 | 1 | 233 | 1 | 233 | 2.03e-153 | 426 |
| MS.gene24232.t1 | AT2G31610 | 88.987 | 227 | 25 | 0 | 1 | 227 | 1 | 227 | 4.40e-149 | 416 |
| MS.gene24232.t1 | AT3G53870 | 92.166 | 217 | 17 | 0 | 1 | 217 | 1 | 217 | 1.47e-148 | 414 |
Find 67 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAGGGTGTTCTTGGTATTA+AGG | 0.259759 | 1.2:+1855827 | MS.gene24232:intron |
| TTAGGACCTTGCTTTCCTTT+AGG | 0.279269 | 1.2:-1855873 | None:intergenic |
| GCTATTCCGGTGTTGAGGTT+AGG | 0.315077 | 1.2:+1855214 | MS.gene24232:CDS |
| CTTGCTGAAGATGGCTATTC+CGG | 0.326131 | 1.2:+1855201 | MS.gene24232:CDS |
| TCCCCTGTTGTTAACCTTCT+CGG | 0.326817 | 1.2:-1855464 | None:intergenic |
| CGGTGTGTTGAGGTTTGTTA+TGG | 0.332791 | 1.2:+1855561 | MS.gene24232:CDS |
| ACTCGTACCCAAGCTGTTCT+TGG | 0.341791 | 1.2:+1855273 | MS.gene24232:CDS |
| GATGTACTCTTCCTCCTCCT+TGG | 0.351127 | 1.2:-1855931 | None:intergenic |
| AAACCTCAACACACCGTAAC+AGG | 0.355716 | 1.2:-1855554 | None:intergenic |
| CTCATCTGGCCAACCTGTTA+AGG | 0.357556 | 1.2:+1855675 | MS.gene24232:CDS |
| ATAGCCATCCTTGAACTTCA+TGG | 0.360301 | 1.2:-1855647 | None:intergenic |
| CTATTCCGGTGTTGAGGTTA+GGG | 0.371348 | 1.2:+1855215 | MS.gene24232:CDS |
| GGATGTGAGGTTATTGTTAG+TGG | 0.386156 | 1.2:+1855598 | MS.gene24232:CDS |
| GAGTCAATGTAATCCTTAAC+AGG | 0.402767 | 1.2:-1855688 | None:intergenic |
| ATCCTTGAACTTCATGGACT+TGG | 0.424680 | 1.2:-1855641 | None:intergenic |
| ATGTACTCTTCCTCCTCCTT+GGG | 0.427577 | 1.2:-1855930 | None:intergenic |
| GTGTGAATGGTAACAATATC+AGG | 0.428011 | 1.2:-1855906 | None:intergenic |
| AGGTGAAGATTATGCTTGAC+TGG | 0.432560 | 1.2:+1855847 | MS.gene24232:CDS |
| CTCCTCCTTGGGAGTGTGAA+TGG | 0.434959 | 1.2:-1855919 | None:intergenic |
| ACCAGAGAGCTTGCTGAAGA+TGG | 0.438488 | 1.2:+1855192 | MS.gene24232:CDS |
| GATGGCTATATGATCTCATC+TGG | 0.452022 | 1.2:+1855661 | MS.gene24232:CDS |
| TCTCTTCGTTACAAGCTTCT+CGG | 0.453319 | 1.2:+1855511 | MS.gene24232:CDS |
| ATGCCGAGAAGGTTAACAAC+AGG | 0.456910 | 1.2:+1855461 | MS.gene24232:CDS |
| CAAACAACAGGGACTGGGAC+AGG | 0.457728 | 1.2:-1855990 | None:intergenic |
| AGGAGGAGGAAGAGTACATC+AGG | 0.462947 | 1.2:+1855934 | MS.gene24232:CDS |
| TTGAGGTTTGTTATGGAAAG+TGG | 0.475116 | 1.2:+1855568 | MS.gene24232:CDS |
| AATGATTAGGTGAGAAGGGA+AGG | 0.478164 | 1.2:+1855371 | MS.gene24232:intron |
| GATTAGGTGAGAAGGGAAGG+AGG | 0.484267 | 1.2:+1855374 | MS.gene24232:intron |
| TATAGTTCAACACTGTTCTC+AGG | 0.488325 | 1.2:-1855439 | None:intergenic |
| GCCATCTTCAGCAAGCTCTC+TGG | 0.491889 | 1.2:-1855193 | None:intergenic |
| AGCCAAGTCCATGAAGTTCA+AGG | 0.492737 | 1.2:+1855639 | MS.gene24232:CDS |
| TGTTATGGAAAGTGGTGCTA+AGG | 0.499768 | 1.2:+1855576 | MS.gene24232:CDS |
| TAGACATGTTCTTCTCAGAC+AGG | 0.500852 | 1.2:+1855717 | MS.gene24232:CDS |
| TTGTTGCAGTTCGTCGCTGA+CGG | 0.501712 | 1.2:+1855138 | MS.gene24232:intron |
| TGACCTCAGTAGTCCAGAAA+AGG | 0.517945 | 1.2:+1855407 | MS.gene24232:CDS |
| CTACGAACCAAGAACAGCTT+GGG | 0.525454 | 1.2:-1855280 | None:intergenic |
| GATGATGATCTCAGTGCGCA+TGG | 0.527229 | 1.2:-1855244 | None:intergenic |
| TCATTTGCAACAACAGCAGC+AGG | 0.528096 | 1.2:-1855957 | None:intergenic |
| GATTAATGATTAGGTGAGAA+GGG | 0.529224 | 1.2:+1855367 | MS.gene24232:intron |
| TTTCTTCGCTGAATTGAATG+AGG | 0.530015 | 1.2:+1855164 | MS.gene24232:CDS |
| AATGGTAACAATATCAGGTA+GGG | 0.532486 | 1.2:-1855901 | None:intergenic |
| GCTGTTCGCAGAGCCTGTTA+CGG | 0.553152 | 1.2:+1855541 | MS.gene24232:CDS |
| GAGCCTGTTACGGTGTGTTG+AGG | 0.556363 | 1.2:+1855551 | MS.gene24232:CDS |
| TGATTAATGATTAGGTGAGA+AGG | 0.556668 | 1.2:+1855366 | MS.gene24232:intron |
| ATGCTTGACTGGGATCCTAA+AGG | 0.556783 | 1.2:+1855858 | MS.gene24232:CDS |
| TGTTGTTGCAAATGATATTG+AGG | 0.562213 | 1.2:+1855965 | MS.gene24232:CDS |
| ACTACGAACCAAGAACAGCT+TGG | 0.565206 | 1.2:-1855281 | None:intergenic |
| TTTCTCAAACAACAGGGACT+GGG | 0.568525 | 1.2:-1855995 | None:intergenic |
| GTTATGGAAAGTGGTGCTAA+GGG | 0.582081 | 1.2:+1855577 | MS.gene24232:CDS |
| GAATGGTAACAATATCAGGT+AGG | 0.585408 | 1.2:-1855902 | None:intergenic |
| AGATGGCTATTCCGGTGTTG+AGG | 0.587442 | 1.2:+1855209 | MS.gene24232:CDS |
| CATTCACACTCCCAAGGAGG+AGG | 0.589806 | 1.2:+1855920 | MS.gene24232:CDS |
| CAATGTAATCCTTAACAGGT+TGG | 0.596885 | 1.2:-1855684 | None:intergenic |
| TGGGATCCTAAAGGAAAGCA+AGG | 0.601952 | 1.2:+1855867 | MS.gene24232:CDS |
| GGTGAAGATTATGCTTGACT+GGG | 0.603451 | 1.2:+1855848 | MS.gene24232:CDS |
| AAACAACAGGGACTGGGACA+GGG | 0.607283 | 1.2:-1855989 | None:intergenic |
| TGTTGAACTATATGCCGAGA+AGG | 0.615665 | 1.2:+1855450 | MS.gene24232:CDS |
| ATGGTAACAATATCAGGTAG+GGG | 0.623679 | 1.2:-1855900 | None:intergenic |
| TGTTACCATTCACACTCCCA+AGG | 0.629341 | 1.2:+1855914 | MS.gene24232:CDS |
| AAGTCCATGAAGTTCAAGGA+TGG | 0.640546 | 1.2:+1855643 | MS.gene24232:CDS |
| ATGATGATCTCAGTGCGCAT+GGG | 0.667262 | 1.2:-1855243 | None:intergenic |
| AAGTGGTGCTAAGGGATGTG+AGG | 0.670962 | 1.2:+1855585 | MS.gene24232:CDS |
| CTTCGTTACAAGCTTCTCGG+AGG | 0.671532 | 1.2:+1855514 | MS.gene24232:CDS |
| TGCCGAGAAGGTTAACAACA+GGG | 0.674234 | 1.2:+1855462 | MS.gene24232:CDS |
| AGTAACCCTAACCTCAACAC+CGG | 0.681090 | 1.2:-1855220 | None:intergenic |
| GCCGAGAAGGTTAACAACAG+GGG | 0.682645 | 1.2:+1855463 | MS.gene24232:CDS |
| TACCATTCACACTCCCAAGG+AGG | 0.690748 | 1.2:+1855917 | MS.gene24232:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTTTTATATGAATTTAAA+TGG | + | chr1.2:1855336-1855355 | MS.gene24232:intron | 10.0% |
| !!! | ATTATTACCTTTATTTTGTA+GGG | + | chr1.2:1855810-1855829 | MS.gene24232:intron | 15.0% |
| !!! | GATTATTACCTTTATTTTGT+AGG | + | chr1.2:1855809-1855828 | MS.gene24232:intron | 20.0% |
| ! | GTTGAATCTGATTAATGATT+AGG | + | chr1.2:1855358-1855377 | MS.gene24232:intron | 25.0% |
| AAACCAACAAGGTTGTTATA+GGG | - | chr1.2:1855755-1855774 | None:intergenic | 30.0% | |
| AAGAACACCCTACAAAATAA+AGG | - | chr1.2:1855820-1855839 | None:intergenic | 30.0% | |
| AATAACAAACCAAACCAACA+AGG | - | chr1.2:1855766-1855785 | None:intergenic | 30.0% | |
| AATGGTAACAATATCAGGTA+GGG | - | chr1.2:1855904-1855923 | None:intergenic | 30.0% | |
| CACTACTAATAGAGATGAAT+TGG | - | chr1.2:1855077-1855096 | None:intergenic | 30.0% | |
| GATTAATGATTAGGTGAGAA+GGG | + | chr1.2:1855367-1855386 | MS.gene24232:intron | 30.0% | |
| TGATTAATGATTAGGTGAGA+AGG | + | chr1.2:1855366-1855385 | MS.gene24232:intron | 30.0% | |
| TGTTGTTGCAAATGATATTG+AGG | + | chr1.2:1855965-1855984 | MS.gene24232:CDS | 30.0% | |
| !!! | TTTATTTTGTAGGGTGTTCT+TGG | + | chr1.2:1855819-1855838 | MS.gene24232:intron | 30.0% |
| ATGGTAACAATATCAGGTAG+GGG | - | chr1.2:1855903-1855922 | None:intergenic | 35.0% | |
| CAAACCAACAAGGTTGTTAT+AGG | - | chr1.2:1855756-1855775 | None:intergenic | 35.0% | |
| CAATGTAATCCTTAACAGGT+TGG | - | chr1.2:1855687-1855706 | None:intergenic | 35.0% | |
| GAATGGTAACAATATCAGGT+AGG | - | chr1.2:1855905-1855924 | None:intergenic | 35.0% | |
| GAGTCAATGTAATCCTTAAC+AGG | - | chr1.2:1855691-1855710 | None:intergenic | 35.0% | |
| GTGTGAATGGTAACAATATC+AGG | - | chr1.2:1855909-1855928 | None:intergenic | 35.0% | |
| TATAGTTCAACACTGTTCTC+AGG | - | chr1.2:1855442-1855461 | None:intergenic | 35.0% | |
| TTACCCTATAACAACCTTGT+TGG | + | chr1.2:1855749-1855768 | MS.gene24232:intron | 35.0% | |
| TTTCTTCGCTGAATTGAATG+AGG | + | chr1.2:1855164-1855183 | MS.gene24232:CDS | 35.0% | |
| ! | CAGGAAACTTAAACCTTTTC+TGG | - | chr1.2:1855423-1855442 | None:intergenic | 35.0% |
| ! | CTATAACAACCTTGTTGGTT+TGG | + | chr1.2:1855754-1855773 | MS.gene24232:intron | 35.0% |
| !! | TTGAGGTTTGTTATGGAAAG+TGG | + | chr1.2:1855568-1855587 | MS.gene24232:CDS | 35.0% |
| !!! | CTTTCGCTTTTTGCTCATTT+GGG | - | chr1.2:1855026-1855045 | None:intergenic | 35.0% |
| AAGTCCATGAAGTTCAAGGA+TGG | + | chr1.2:1855643-1855662 | MS.gene24232:CDS | 40.0% | |
| AATGATTAGGTGAGAAGGGA+AGG | + | chr1.2:1855371-1855390 | MS.gene24232:intron | 40.0% | |
| AGGTGAAGATTATGCTTGAC+TGG | + | chr1.2:1855847-1855866 | MS.gene24232:CDS | 40.0% | |
| ATAGCCATCCTTGAACTTCA+TGG | - | chr1.2:1855650-1855669 | None:intergenic | 40.0% | |
| ATCCTTGAACTTCATGGACT+TGG | - | chr1.2:1855644-1855663 | None:intergenic | 40.0% | |
| CCAAATGAGCAAAAAGCGAA+AGG | + | chr1.2:1855024-1855043 | MS.gene24232:CDS | 40.0% | |
| GATGGCTATATGATCTCATC+TGG | + | chr1.2:1855661-1855680 | MS.gene24232:CDS | 40.0% | |
| GGATGTGAGGTTATTGTTAG+TGG | + | chr1.2:1855598-1855617 | MS.gene24232:CDS | 40.0% | |
| GGTGAAGATTATGCTTGACT+GGG | + | chr1.2:1855848-1855867 | MS.gene24232:CDS | 40.0% | |
| TAGACATGTTCTTCTCAGAC+AGG | + | chr1.2:1855717-1855736 | MS.gene24232:CDS | 40.0% | |
| TCTCTTCGTTACAAGCTTCT+CGG | + | chr1.2:1855511-1855530 | MS.gene24232:CDS | 40.0% | |
| TGTTGAACTATATGCCGAGA+AGG | + | chr1.2:1855450-1855469 | MS.gene24232:CDS | 40.0% | |
| TTAGGACCTTGCTTTCCTTT+AGG | - | chr1.2:1855876-1855895 | None:intergenic | 40.0% | |
| ! | AAACCTTTTCTGGACTACTG+AGG | - | chr1.2:1855413-1855432 | None:intergenic | 40.0% |
| ! | ATATCAGGTAGGGGAGTTTT+AGG | - | chr1.2:1855894-1855913 | None:intergenic | 40.0% |
| ! | GTAGGGTGTTCTTGGTATTA+AGG | + | chr1.2:1855827-1855846 | MS.gene24232:intron | 40.0% |
| ! | GTTATGGAAAGTGGTGCTAA+GGG | + | chr1.2:1855577-1855596 | MS.gene24232:CDS | 40.0% |
| ! | TGTTATGGAAAGTGGTGCTA+AGG | + | chr1.2:1855576-1855595 | MS.gene24232:CDS | 40.0% |
| !!! | CCTTTCGCTTTTTGCTCATT+TGG | - | chr1.2:1855027-1855046 | None:intergenic | 40.0% |
| AAACCTCAACACACCGTAAC+AGG | - | chr1.2:1855557-1855576 | None:intergenic | 45.0% | |
| ACTACGAACCAAGAACAGCT+TGG | - | chr1.2:1855284-1855303 | None:intergenic | 45.0% | |
| AGCCAAGTCCATGAAGTTCA+AGG | + | chr1.2:1855639-1855658 | MS.gene24232:CDS | 45.0% | |
| AGTAACCCTAACCTCAACAC+CGG | - | chr1.2:1855223-1855242 | None:intergenic | 45.0% | |
| ATGATGATCTCAGTGCGCAT+GGG | - | chr1.2:1855246-1855265 | None:intergenic | 45.0% | |
| ATGCCGAGAAGGTTAACAAC+AGG | + | chr1.2:1855461-1855480 | MS.gene24232:CDS | 45.0% | |
| ATGCTTGACTGGGATCCTAA+AGG | + | chr1.2:1855858-1855877 | MS.gene24232:CDS | 45.0% | |
| ATGTACTCTTCCTCCTCCTT+GGG | - | chr1.2:1855933-1855952 | None:intergenic | 45.0% | |
| CTACGAACCAAGAACAGCTT+GGG | - | chr1.2:1855283-1855302 | None:intergenic | 45.0% | |
| CTTGCTGAAGATGGCTATTC+CGG | + | chr1.2:1855201-1855220 | MS.gene24232:CDS | 45.0% | |
| TCATTTGCAACAACAGCAGC+AGG | - | chr1.2:1855960-1855979 | None:intergenic | 45.0% | |
| TCCCCTGTTGTTAACCTTCT+CGG | - | chr1.2:1855467-1855486 | None:intergenic | 45.0% | |
| TGACCTCAGTAGTCCAGAAA+AGG | + | chr1.2:1855407-1855426 | MS.gene24232:CDS | 45.0% | |
| TGCCGAGAAGGTTAACAACA+GGG | + | chr1.2:1855462-1855481 | MS.gene24232:CDS | 45.0% | |
| TGGGATCCTAAAGGAAAGCA+AGG | + | chr1.2:1855867-1855886 | MS.gene24232:CDS | 45.0% | |
| TGTTACCATTCACACTCCCA+AGG | + | chr1.2:1855914-1855933 | MS.gene24232:CDS | 45.0% | |
| ! | CTATTCCGGTGTTGAGGTTA+GGG | + | chr1.2:1855215-1855234 | MS.gene24232:CDS | 45.0% |
| !! | CGGTGTGTTGAGGTTTGTTA+TGG | + | chr1.2:1855561-1855580 | MS.gene24232:CDS | 45.0% |
| AAACAACAGGGACTGGGACA+GGG | - | chr1.2:1855992-1856011 | None:intergenic | 50.0% | |
| ACTCGTACCCAAGCTGTTCT+TGG | + | chr1.2:1855273-1855292 | MS.gene24232:CDS | 50.0% | |
| CTCATCTGGCCAACCTGTTA+AGG | + | chr1.2:1855675-1855694 | MS.gene24232:CDS | 50.0% | |
| CTTCGTTACAAGCTTCTCGG+AGG | + | chr1.2:1855514-1855533 | MS.gene24232:CDS | 50.0% | |
| GATGATGATCTCAGTGCGCA+TGG | - | chr1.2:1855247-1855266 | None:intergenic | 50.0% | |
| GATGTACTCTTCCTCCTCCT+TGG | - | chr1.2:1855934-1855953 | None:intergenic | 50.0% | |
| GATTAGGTGAGAAGGGAAGG+AGG | + | chr1.2:1855374-1855393 | MS.gene24232:intron | 50.0% | |
| GCCGAGAAGGTTAACAACAG+GGG | + | chr1.2:1855463-1855482 | MS.gene24232:CDS | 50.0% | |
| TACCATTCACACTCCCAAGG+AGG | + | chr1.2:1855917-1855936 | MS.gene24232:CDS | 50.0% | |
| TTGTTGCAGTTCGTCGCTGA+CGG | + | chr1.2:1855138-1855157 | MS.gene24232:intron | 50.0% | |
| ! | AAGTGGTGCTAAGGGATGTG+AGG | + | chr1.2:1855585-1855604 | MS.gene24232:CDS | 50.0% |
| ! | AGATGGCTATTCCGGTGTTG+AGG | + | chr1.2:1855209-1855228 | MS.gene24232:CDS | 50.0% |
| ! | AGGAGGAGGAAGAGTACATC+AGG | + | chr1.2:1855934-1855953 | MS.gene24232:CDS | 50.0% |
| ! | GCTATTCCGGTGTTGAGGTT+AGG | + | chr1.2:1855214-1855233 | MS.gene24232:CDS | 50.0% |
| !! | ACCAGAGAGCTTGCTGAAGA+TGG | + | chr1.2:1855192-1855211 | MS.gene24232:CDS | 50.0% |
| CAAACAACAGGGACTGGGAC+AGG | - | chr1.2:1855993-1856012 | None:intergenic | 55.0% | |
| CATTCACACTCCCAAGGAGG+AGG | + | chr1.2:1855920-1855939 | MS.gene24232:CDS | 55.0% | |
| GAGCCTGTTACGGTGTGTTG+AGG | + | chr1.2:1855551-1855570 | MS.gene24232:CDS | 55.0% | |
| GCCATCTTCAGCAAGCTCTC+TGG | - | chr1.2:1855196-1855215 | None:intergenic | 55.0% | |
| GCTGTTCGCAGAGCCTGTTA+CGG | + | chr1.2:1855541-1855560 | MS.gene24232:CDS | 55.0% | |
| ! | CTCCTCCTTGGGAGTGTGAA+TGG | - | chr1.2:1855922-1855941 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 1855016 | 1856013 | 1855016 | ID=MS.gene24232 |
| chr1.2 | mRNA | 1855016 | 1856013 | 1855016 | ID=MS.gene24232.t1;Parent=MS.gene24232 |
| chr1.2 | exon | 1855016 | 1855045 | 1855016 | ID=MS.gene24232.t1.exon1;Parent=MS.gene24232.t1 |
| chr1.2 | CDS | 1855016 | 1855045 | 1855016 | ID=cds.MS.gene24232.t1;Parent=MS.gene24232.t1 |
| chr1.2 | exon | 1855147 | 1855294 | 1855147 | ID=MS.gene24232.t1.exon2;Parent=MS.gene24232.t1 |
| chr1.2 | CDS | 1855147 | 1855294 | 1855147 | ID=cds.MS.gene24232.t1;Parent=MS.gene24232.t1 |
| chr1.2 | exon | 1855380 | 1855738 | 1855380 | ID=MS.gene24232.t1.exon3;Parent=MS.gene24232.t1 |
| chr1.2 | CDS | 1855380 | 1855738 | 1855380 | ID=cds.MS.gene24232.t1;Parent=MS.gene24232.t1 |
| chr1.2 | exon | 1855831 | 1856013 | 1855831 | ID=MS.gene24232.t1.exon4;Parent=MS.gene24232.t1 |
| chr1.2 | CDS | 1855831 | 1856013 | 1855831 | ID=cds.MS.gene24232.t1;Parent=MS.gene24232.t1 |
| Gene Sequence |
| Protein sequence |
