Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27265.t1 | XP_003590123.1 | 100 | 239 | 0 | 0 | 1 | 239 | 1 | 239 | 1.40E-126 | 462.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27265.t1 | Q9FJA6 | 88.8 | 233 | 26 | 0 | 1 | 233 | 1 | 233 | 1.3e-112 | 407.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27265.t1 | B7FH64 | 100.0 | 239 | 0 | 0 | 1 | 239 | 1 | 239 | 1.0e-126 | 462.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049306 | MS.gene27265 | 0.81222 | 4.73E-51 | -1.69E-46 |
| MS.gene049387 | MS.gene27265 | 0.829801 | 4.20E-55 | -1.69E-46 |
| MS.gene050134 | MS.gene27265 | 0.902421 | 9.86E-79 | -1.69E-46 |
| MS.gene050252 | MS.gene27265 | 0.867158 | 1.68E-65 | -1.69E-46 |
| MS.gene050791 | MS.gene27265 | 0.855093 | 7.95E-62 | -1.69E-46 |
| MS.gene051904 | MS.gene27265 | 0.805851 | 1.09E-49 | -1.69E-46 |
| MS.gene051984 | MS.gene27265 | 0.811428 | 7.04E-51 | -1.69E-46 |
| MS.gene052664 | MS.gene27265 | 0.885765 | 6.13E-72 | -1.69E-46 |
| MS.gene052666 | MS.gene27265 | 0.831999 | 1.21E-55 | -1.69E-46 |
| MS.gene053224 | MS.gene27265 | 0.875039 | 4.22E-68 | -1.69E-46 |
| MS.gene054624 | MS.gene27265 | 0.83673 | 7.88E-57 | -1.69E-46 |
| MS.gene057272 | MS.gene27265 | 0.898364 | 5.70E-77 | -1.69E-46 |
| MS.gene057321 | MS.gene27265 | 0.82052 | 6.57E-53 | -1.69E-46 |
| MS.gene057641 | MS.gene27265 | 0.834674 | 2.62E-56 | -1.69E-46 |
| MS.gene057643 | MS.gene27265 | 0.873441 | 1.47E-67 | -1.69E-46 |
| MS.gene058994 | MS.gene27265 | 0.851694 | 7.51E-61 | -1.69E-46 |
| MS.gene059340 | MS.gene27265 | 0.870637 | 1.26E-66 | -1.69E-46 |
| MS.gene059878 | MS.gene27265 | 0.834051 | 3.75E-56 | -1.69E-46 |
| MS.gene059880 | MS.gene27265 | 0.839573 | 1.46E-57 | -1.69E-46 |
| MS.gene060483 | MS.gene27265 | 0.849607 | 2.90E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene41083 | MS.gene27265 | PPI |
| MS.gene27265 | MS.gene053439 | PPI |
| MS.gene27003 | MS.gene27265 | PPI |
| MS.gene27265 | MS.gene98229 | PPI |
| MS.gene27265 | MS.gene055646 | PPI |
| MS.gene93153 | MS.gene27265 | PPI |
| MS.gene20081 | MS.gene27265 | PPI |
| MS.gene41081 | MS.gene27265 | PPI |
| MS.gene36891 | MS.gene27265 | PPI |
| MS.gene27265 | MS.gene98228 | PPI |
| MS.gene27265 | MS.gene08126 | PPI |
| MS.gene27265 | MS.gene33653 | PPI |
| MS.gene034801 | MS.gene27265 | PPI |
| MS.gene27265 | MS.gene31853 | PPI |
| MS.gene27265 | MS.gene063717 | PPI |
| MS.gene055644 | MS.gene27265 | PPI |
| MS.gene24232 | MS.gene27265 | PPI |
| MS.gene073885 | MS.gene27265 | PPI |
| MS.gene63685 | MS.gene27265 | PPI |
| MS.gene90723 | MS.gene27265 | PPI |
| MS.gene026677 | MS.gene27265 | PPI |
| MS.gene27265 | MS.gene96480 | PPI |
| MS.gene061619 | MS.gene27265 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27265.t1 | MTR_1g044660 | 100.000 | 239 | 0 | 0 | 1 | 239 | 1 | 239 | 3.63e-177 | 486 |
| MS.gene27265.t1 | MTR_1g023000 | 99.163 | 239 | 2 | 0 | 1 | 239 | 1 | 239 | 2.37e-176 | 484 |
| MS.gene27265.t1 | MTR_6g052140 | 94.538 | 238 | 8 | 1 | 1 | 238 | 1 | 233 | 6.51e-166 | 457 |
| MS.gene27265.t1 | MTR_6g052220 | 94.538 | 238 | 8 | 1 | 1 | 238 | 1 | 233 | 6.51e-166 | 457 |
| MS.gene27265.t1 | MTR_1g111450 | 86.383 | 235 | 31 | 1 | 1 | 234 | 1 | 235 | 5.09e-150 | 417 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27265.t1 | AT5G35530 | 88.841 | 233 | 26 | 0 | 1 | 233 | 1 | 233 | 2.03e-153 | 426 |
| MS.gene27265.t1 | AT2G31610 | 88.987 | 227 | 25 | 0 | 1 | 227 | 1 | 227 | 4.40e-149 | 416 |
| MS.gene27265.t1 | AT3G53870 | 92.166 | 217 | 17 | 0 | 1 | 217 | 1 | 217 | 1.47e-148 | 414 |
Find 66 sgRNAs with CRISPR-Local
Find 83 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAGGGTGTTCTTGGTATTA+AGG | 0.259759 | 1.1:+1572278 | MS.gene27265:intron |
| TTAGGACCTTGCTTTCCTTT+AGG | 0.279269 | 1.1:-1572324 | None:intergenic |
| GCTATTCCGGTGTTGAGGTT+AGG | 0.315077 | 1.1:+1571653 | MS.gene27265:CDS |
| CTTGCTGAAGATGGCTATTC+CGG | 0.326131 | 1.1:+1571640 | MS.gene27265:CDS |
| TCCCCTGTTGTTAACCTTCT+CGG | 0.326817 | 1.1:-1571915 | None:intergenic |
| CGGTGTGTTGAGGTTTGTTA+TGG | 0.332791 | 1.1:+1572012 | MS.gene27265:CDS |
| ACTCGTACCCAAGCTGTTCT+TGG | 0.341791 | 1.1:+1571712 | MS.gene27265:CDS |
| AAACCTCAACACACCGTAAC+AGG | 0.355716 | 1.1:-1572005 | None:intergenic |
| CTCATCTGGCCAACCTGTTA+AGG | 0.357556 | 1.1:+1572126 | MS.gene27265:CDS |
| ATAGCCATCCTTGAACTTCA+TGG | 0.360301 | 1.1:-1572098 | None:intergenic |
| ATGTACTCTTCCTCCTCCTT+TGG | 0.368666 | 1.1:-1572381 | None:intergenic |
| CTATTCCGGTGTTGAGGTTA+GGG | 0.371348 | 1.1:+1571654 | MS.gene27265:CDS |
| GGATGTGAGGTTATTGTTAG+TGG | 0.386156 | 1.1:+1572049 | MS.gene27265:CDS |
| GAGTCAATGTAATCCTTAAC+AGG | 0.402767 | 1.1:-1572139 | None:intergenic |
| CTCCTCCTTTGGAGTGTGAA+TGG | 0.408543 | 1.1:-1572370 | None:intergenic |
| ATCCTTGAACTTCATGGACT+TGG | 0.424680 | 1.1:-1572092 | None:intergenic |
| GTGTGAATGGTAACAATATC+AGG | 0.428011 | 1.1:-1572357 | None:intergenic |
| AGGTGAAGATTATGCTTGAC+TGG | 0.432560 | 1.1:+1572298 | MS.gene27265:CDS |
| ACCAGAGAGCTTGCTGAAGA+TGG | 0.438488 | 1.1:+1571631 | MS.gene27265:CDS |
| GATGGCTATATGATCTCATC+TGG | 0.452022 | 1.1:+1572112 | MS.gene27265:CDS |
| TCTCTTCGTTACAAGCTTCT+CGG | 0.453319 | 1.1:+1571962 | MS.gene27265:CDS |
| ATGCCGAGAAGGTTAACAAC+AGG | 0.456910 | 1.1:+1571912 | MS.gene27265:CDS |
| CAAACAACAGGGACTGGGAC+AGG | 0.457728 | 1.1:-1572441 | None:intergenic |
| AGGAGGAGGAAGAGTACATC+AGG | 0.461009 | 1.1:+1572385 | MS.gene27265:CDS |
| TTGAGGTTTGTTATGGAAAG+TGG | 0.475116 | 1.1:+1572019 | MS.gene27265:CDS |
| GATTAGGTGAGAAGGGAAGG+AGG | 0.484267 | 1.1:+1571825 | MS.gene27265:intron |
| TATAGTTCAACACTGTTCTC+AGG | 0.488325 | 1.1:-1571890 | None:intergenic |
| GCCATCTTCAGCAAGCTCTC+TGG | 0.491889 | 1.1:-1571632 | None:intergenic |
| AGCCAAGTCCATGAAGTTCA+AGG | 0.492737 | 1.1:+1572090 | MS.gene27265:CDS |
| AATTAATGATTAGGTGAGAA+GGG | 0.493314 | 1.1:+1571818 | MS.gene27265:intron |
| TGTTATGGAAAGTGGTGCTA+AGG | 0.499768 | 1.1:+1572027 | MS.gene27265:CDS |
| TAGACATGTTCTTCTCAGAC+AGG | 0.500852 | 1.1:+1572168 | MS.gene27265:CDS |
| TTGTTGCAGTTCGTCGCTGA+CGG | 0.501712 | 1.1:+1571577 | MS.gene27265:intron |
| AATGATTAGGTGAGAAGGGA+AGG | 0.513264 | 1.1:+1571822 | MS.gene27265:intron |
| TGACCTCAGTAGTCCAGAAA+AGG | 0.517945 | 1.1:+1571858 | MS.gene27265:CDS |
| CTACGAACCAAGAACAGCTT+GGG | 0.525454 | 1.1:-1571719 | None:intergenic |
| GATGATGATCTCAGTGCGCA+TGG | 0.527229 | 1.1:-1571683 | None:intergenic |
| TCATTTGCAACAACAGCAGC+AGG | 0.528096 | 1.1:-1572408 | None:intergenic |
| TTTCTTCGCTGAATTGAATG+AGG | 0.530015 | 1.1:+1571603 | MS.gene27265:CDS |
| AATGGTAACAATATCAGGTA+GGG | 0.532486 | 1.1:-1572352 | None:intergenic |
| GCTGTTCGCAGAGCCTGTTA+CGG | 0.553152 | 1.1:+1571992 | MS.gene27265:CDS |
| GAGCCTGTTACGGTGTGTTG+AGG | 0.556363 | 1.1:+1572002 | MS.gene27265:CDS |
| ATGCTTGACTGGGATCCTAA+AGG | 0.556783 | 1.1:+1572309 | MS.gene27265:CDS |
| TGTTGTTGCAAATGATATTG+AGG | 0.562213 | 1.1:+1572416 | MS.gene27265:CDS |
| ACTACGAACCAAGAACAGCT+TGG | 0.565206 | 1.1:-1571720 | None:intergenic |
| TTTCTCAAACAACAGGGACT+GGG | 0.568525 | 1.1:-1572446 | None:intergenic |
| GTTATGGAAAGTGGTGCTAA+GGG | 0.582081 | 1.1:+1572028 | MS.gene27265:CDS |
| GAATGGTAACAATATCAGGT+AGG | 0.585408 | 1.1:-1572353 | None:intergenic |
| AGATGGCTATTCCGGTGTTG+AGG | 0.587442 | 1.1:+1571648 | MS.gene27265:CDS |
| GAATTAATGATTAGGTGAGA+AGG | 0.589593 | 1.1:+1571817 | MS.gene27265:intron |
| CAATGTAATCCTTAACAGGT+TGG | 0.596885 | 1.1:-1572135 | None:intergenic |
| TGGGATCCTAAAGGAAAGCA+AGG | 0.601952 | 1.1:+1572318 | MS.gene27265:CDS |
| GGTGAAGATTATGCTTGACT+GGG | 0.603451 | 1.1:+1572299 | MS.gene27265:CDS |
| AAACAACAGGGACTGGGACA+GGG | 0.607283 | 1.1:-1572440 | None:intergenic |
| TGTTGAACTATATGCCGAGA+AGG | 0.615665 | 1.1:+1571901 | MS.gene27265:CDS |
| TACCATTCACACTCCAAAGG+AGG | 0.618529 | 1.1:+1572368 | MS.gene27265:CDS |
| CATTCACACTCCAAAGGAGG+AGG | 0.623248 | 1.1:+1572371 | MS.gene27265:CDS |
| ATGGTAACAATATCAGGTAG+GGG | 0.623679 | 1.1:-1572351 | None:intergenic |
| TGTTACCATTCACACTCCAA+AGG | 0.627045 | 1.1:+1572365 | MS.gene27265:CDS |
| AAGTCCATGAAGTTCAAGGA+TGG | 0.640546 | 1.1:+1572094 | MS.gene27265:CDS |
| ATGATGATCTCAGTGCGCAT+GGG | 0.667262 | 1.1:-1571682 | None:intergenic |
| AAGTGGTGCTAAGGGATGTG+AGG | 0.670962 | 1.1:+1572036 | MS.gene27265:CDS |
| CTTCGTTACAAGCTTCTCGG+AGG | 0.671532 | 1.1:+1571965 | MS.gene27265:CDS |
| TGCCGAGAAGGTTAACAACA+GGG | 0.674234 | 1.1:+1571913 | MS.gene27265:CDS |
| AGTAACCCTAACCTCAACAC+CGG | 0.681090 | 1.1:-1571659 | None:intergenic |
| GCCGAGAAGGTTAACAACAG+GGG | 0.682645 | 1.1:+1571914 | MS.gene27265:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTTTTATATGAATTTAAA+TGG | + | chr1.1:1571779-1571798 | MS.gene27265:intron | 10.0% |
| !! | TGATTTATGAATTAATGATT+AGG | + | chr1.1:1571809-1571828 | MS.gene27265:intron | 15.0% |
| !!! | ATTATTACCTTTATTTTGTA+GGG | + | chr1.1:1572261-1572280 | MS.gene27265:intron | 15.0% |
| !!! | GATTATTACCTTTATTTTGT+AGG | + | chr1.1:1572260-1572279 | MS.gene27265:intron | 20.0% |
| ! | AATTAATGATTAGGTGAGAA+GGG | + | chr1.1:1571818-1571837 | MS.gene27265:intron | 25.0% |
| AAACCAACAAGGTTGTTATA+GGG | - | chr1.1:1572206-1572225 | None:intergenic | 30.0% | |
| AAGAACACCCTACAAAATAA+AGG | - | chr1.1:1572271-1572290 | None:intergenic | 30.0% | |
| AATAACAAACCAAACCAACA+AGG | - | chr1.1:1572217-1572236 | None:intergenic | 30.0% | |
| AATGGTAACAATATCAGGTA+GGG | - | chr1.1:1572355-1572374 | None:intergenic | 30.0% | |
| CACTACTAATAGAGATGAAT+TGG | - | chr1.1:1571516-1571535 | None:intergenic | 30.0% | |
| GAATTAATGATTAGGTGAGA+AGG | + | chr1.1:1571817-1571836 | MS.gene27265:intron | 30.0% | |
| TGTTGTTGCAAATGATATTG+AGG | + | chr1.1:1572416-1572435 | MS.gene27265:CDS | 30.0% | |
| !!! | TTTATTTTGTAGGGTGTTCT+TGG | + | chr1.1:1572270-1572289 | MS.gene27265:intron | 30.0% |
| ATGGTAACAATATCAGGTAG+GGG | - | chr1.1:1572354-1572373 | None:intergenic | 35.0% | |
| CAAACCAACAAGGTTGTTAT+AGG | - | chr1.1:1572207-1572226 | None:intergenic | 35.0% | |
| CAATGTAATCCTTAACAGGT+TGG | - | chr1.1:1572138-1572157 | None:intergenic | 35.0% | |
| GAATGGTAACAATATCAGGT+AGG | - | chr1.1:1572356-1572375 | None:intergenic | 35.0% | |
| GAGTCAATGTAATCCTTAAC+AGG | - | chr1.1:1572142-1572161 | None:intergenic | 35.0% | |
| GTGTGAATGGTAACAATATC+AGG | - | chr1.1:1572360-1572379 | None:intergenic | 35.0% | |
| TATAGTTCAACACTGTTCTC+AGG | - | chr1.1:1571893-1571912 | None:intergenic | 35.0% | |
| TTACCCTATAACAACCTTGT+TGG | + | chr1.1:1572200-1572219 | MS.gene27265:intron | 35.0% | |
| TTTCTTCGCTGAATTGAATG+AGG | + | chr1.1:1571603-1571622 | MS.gene27265:CDS | 35.0% | |
| ! | CAGGAAACTTAAACCTTTTC+TGG | - | chr1.1:1571874-1571893 | None:intergenic | 35.0% |
| ! | CTATAACAACCTTGTTGGTT+TGG | + | chr1.1:1572205-1572224 | MS.gene27265:intron | 35.0% |
| !! | TTGAGGTTTGTTATGGAAAG+TGG | + | chr1.1:1572019-1572038 | MS.gene27265:CDS | 35.0% |
| !!! | CTTTCGCTTTTTGCTCATTT+GGG | - | chr1.1:1571465-1571484 | None:intergenic | 35.0% |
| AAGTCCATGAAGTTCAAGGA+TGG | + | chr1.1:1572094-1572113 | MS.gene27265:CDS | 40.0% | |
| AATGATTAGGTGAGAAGGGA+AGG | + | chr1.1:1571822-1571841 | MS.gene27265:intron | 40.0% | |
| AGGTGAAGATTATGCTTGAC+TGG | + | chr1.1:1572298-1572317 | MS.gene27265:CDS | 40.0% | |
| ATAGCCATCCTTGAACTTCA+TGG | - | chr1.1:1572101-1572120 | None:intergenic | 40.0% | |
| ATCCTTGAACTTCATGGACT+TGG | - | chr1.1:1572095-1572114 | None:intergenic | 40.0% | |
| CCAAATGAGCAAAAAGCGAA+AGG | + | chr1.1:1571463-1571482 | MS.gene27265:CDS | 40.0% | |
| GATGGCTATATGATCTCATC+TGG | + | chr1.1:1572112-1572131 | MS.gene27265:CDS | 40.0% | |
| GGATGTGAGGTTATTGTTAG+TGG | + | chr1.1:1572049-1572068 | MS.gene27265:CDS | 40.0% | |
| GGTGAAGATTATGCTTGACT+GGG | + | chr1.1:1572299-1572318 | MS.gene27265:CDS | 40.0% | |
| TAGACATGTTCTTCTCAGAC+AGG | + | chr1.1:1572168-1572187 | MS.gene27265:CDS | 40.0% | |
| TCTCTTCGTTACAAGCTTCT+CGG | + | chr1.1:1571962-1571981 | MS.gene27265:CDS | 40.0% | |
| TGTTACCATTCACACTCCAA+AGG | + | chr1.1:1572365-1572384 | MS.gene27265:CDS | 40.0% | |
| TGTTGAACTATATGCCGAGA+AGG | + | chr1.1:1571901-1571920 | MS.gene27265:CDS | 40.0% | |
| TTAGGACCTTGCTTTCCTTT+AGG | - | chr1.1:1572327-1572346 | None:intergenic | 40.0% | |
| ! | AAACCTTTTCTGGACTACTG+AGG | - | chr1.1:1571864-1571883 | None:intergenic | 40.0% |
| ! | ATATCAGGTAGGGGAGTTTT+AGG | - | chr1.1:1572345-1572364 | None:intergenic | 40.0% |
| ! | GTAGGGTGTTCTTGGTATTA+AGG | + | chr1.1:1572278-1572297 | MS.gene27265:intron | 40.0% |
| ! | GTTATGGAAAGTGGTGCTAA+GGG | + | chr1.1:1572028-1572047 | MS.gene27265:CDS | 40.0% |
| ! | TGTTATGGAAAGTGGTGCTA+AGG | + | chr1.1:1572027-1572046 | MS.gene27265:CDS | 40.0% |
| !!! | CCTTTCGCTTTTTGCTCATT+TGG | - | chr1.1:1571466-1571485 | None:intergenic | 40.0% |
| AAACCTCAACACACCGTAAC+AGG | - | chr1.1:1572008-1572027 | None:intergenic | 45.0% | |
| ACTACGAACCAAGAACAGCT+TGG | - | chr1.1:1571723-1571742 | None:intergenic | 45.0% | |
| AGCCAAGTCCATGAAGTTCA+AGG | + | chr1.1:1572090-1572109 | MS.gene27265:CDS | 45.0% | |
| AGTAACCCTAACCTCAACAC+CGG | - | chr1.1:1571662-1571681 | None:intergenic | 45.0% | |
| ATGATGATCTCAGTGCGCAT+GGG | - | chr1.1:1571685-1571704 | None:intergenic | 45.0% | |
| ATGCCGAGAAGGTTAACAAC+AGG | + | chr1.1:1571912-1571931 | MS.gene27265:CDS | 45.0% | |
| ATGCTTGACTGGGATCCTAA+AGG | + | chr1.1:1572309-1572328 | MS.gene27265:CDS | 45.0% | |
| ATGTACTCTTCCTCCTCCTT+TGG | - | chr1.1:1572384-1572403 | None:intergenic | 45.0% | |
| CTACGAACCAAGAACAGCTT+GGG | - | chr1.1:1571722-1571741 | None:intergenic | 45.0% | |
| CTTGCTGAAGATGGCTATTC+CGG | + | chr1.1:1571640-1571659 | MS.gene27265:CDS | 45.0% | |
| TACCATTCACACTCCAAAGG+AGG | + | chr1.1:1572368-1572387 | MS.gene27265:CDS | 45.0% | |
| TCATTTGCAACAACAGCAGC+AGG | - | chr1.1:1572411-1572430 | None:intergenic | 45.0% | |
| TCCCCTGTTGTTAACCTTCT+CGG | - | chr1.1:1571918-1571937 | None:intergenic | 45.0% | |
| TGACCTCAGTAGTCCAGAAA+AGG | + | chr1.1:1571858-1571877 | MS.gene27265:CDS | 45.0% | |
| TGCCGAGAAGGTTAACAACA+GGG | + | chr1.1:1571913-1571932 | MS.gene27265:CDS | 45.0% | |
| TGGGATCCTAAAGGAAAGCA+AGG | + | chr1.1:1572318-1572337 | MS.gene27265:CDS | 45.0% | |
| ! | CTATTCCGGTGTTGAGGTTA+GGG | + | chr1.1:1571654-1571673 | MS.gene27265:CDS | 45.0% |
| !! | CGGTGTGTTGAGGTTTGTTA+TGG | + | chr1.1:1572012-1572031 | MS.gene27265:CDS | 45.0% |
| AAACAACAGGGACTGGGACA+GGG | - | chr1.1:1572443-1572462 | None:intergenic | 50.0% | |
| ACTCGTACCCAAGCTGTTCT+TGG | + | chr1.1:1571712-1571731 | MS.gene27265:CDS | 50.0% | |
| CATTCACACTCCAAAGGAGG+AGG | + | chr1.1:1572371-1572390 | MS.gene27265:CDS | 50.0% | |
| CTCATCTGGCCAACCTGTTA+AGG | + | chr1.1:1572126-1572145 | MS.gene27265:CDS | 50.0% | |
| CTTCGTTACAAGCTTCTCGG+AGG | + | chr1.1:1571965-1571984 | MS.gene27265:CDS | 50.0% | |
| GATGATGATCTCAGTGCGCA+TGG | - | chr1.1:1571686-1571705 | None:intergenic | 50.0% | |
| GATTAGGTGAGAAGGGAAGG+AGG | + | chr1.1:1571825-1571844 | MS.gene27265:intron | 50.0% | |
| GCCGAGAAGGTTAACAACAG+GGG | + | chr1.1:1571914-1571933 | MS.gene27265:CDS | 50.0% | |
| TTGTTGCAGTTCGTCGCTGA+CGG | + | chr1.1:1571577-1571596 | MS.gene27265:intron | 50.0% | |
| ! | AAGTGGTGCTAAGGGATGTG+AGG | + | chr1.1:1572036-1572055 | MS.gene27265:CDS | 50.0% |
| ! | AGATGGCTATTCCGGTGTTG+AGG | + | chr1.1:1571648-1571667 | MS.gene27265:CDS | 50.0% |
| ! | AGGAGGAGGAAGAGTACATC+AGG | + | chr1.1:1572385-1572404 | MS.gene27265:CDS | 50.0% |
| ! | GCTATTCCGGTGTTGAGGTT+AGG | + | chr1.1:1571653-1571672 | MS.gene27265:CDS | 50.0% |
| !! | ACCAGAGAGCTTGCTGAAGA+TGG | + | chr1.1:1571631-1571650 | MS.gene27265:CDS | 50.0% |
| !! | CTCCTCCTTTGGAGTGTGAA+TGG | - | chr1.1:1572373-1572392 | None:intergenic | 50.0% |
| CAAACAACAGGGACTGGGAC+AGG | - | chr1.1:1572444-1572463 | None:intergenic | 55.0% | |
| GAGCCTGTTACGGTGTGTTG+AGG | + | chr1.1:1572002-1572021 | MS.gene27265:CDS | 55.0% | |
| GCCATCTTCAGCAAGCTCTC+TGG | - | chr1.1:1571635-1571654 | None:intergenic | 55.0% | |
| GCTGTTCGCAGAGCCTGTTA+CGG | + | chr1.1:1571992-1572011 | MS.gene27265:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 1571455 | 1572464 | 1571455 | ID=MS.gene27265 |
| chr1.1 | mRNA | 1571455 | 1572464 | 1571455 | ID=MS.gene27265.t1;Parent=MS.gene27265 |
| chr1.1 | exon | 1571455 | 1571484 | 1571455 | ID=MS.gene27265.t1.exon1;Parent=MS.gene27265.t1 |
| chr1.1 | CDS | 1571455 | 1571484 | 1571455 | ID=cds.MS.gene27265.t1;Parent=MS.gene27265.t1 |
| chr1.1 | exon | 1571586 | 1571733 | 1571586 | ID=MS.gene27265.t1.exon2;Parent=MS.gene27265.t1 |
| chr1.1 | CDS | 1571586 | 1571733 | 1571586 | ID=cds.MS.gene27265.t1;Parent=MS.gene27265.t1 |
| chr1.1 | exon | 1571831 | 1572189 | 1571831 | ID=MS.gene27265.t1.exon3;Parent=MS.gene27265.t1 |
| chr1.1 | CDS | 1571831 | 1572189 | 1571831 | ID=cds.MS.gene27265.t1;Parent=MS.gene27265.t1 |
| chr1.1 | exon | 1572282 | 1572464 | 1572282 | ID=MS.gene27265.t1.exon4;Parent=MS.gene27265.t1 |
| chr1.1 | CDS | 1572282 | 1572464 | 1572282 | ID=cds.MS.gene27265.t1;Parent=MS.gene27265.t1 |
| Gene Sequence |
| Protein sequence |
