AlfalfaGEDB | MS.gene20835

M. sativa cultivar XinJiangDaYe / MS.gene20835

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene20835.t1	XP_003591445.3	97.8	230	3	2	1	229	46	274	1.00E-121	446

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene20835.t1	Q9LZK4	41.4	244	116	8	1	227	46	279	6.4e-32	139.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene20835.t1	A0A396JRX5	97.8	230	3	2	1	229	46	274	7.4e-122	446.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049378	MS.gene20835	0.801668	8.08E-49	-1.69E-46
MS.gene049758	MS.gene20835	0.825602	4.29E-54	-1.69E-46
MS.gene049915	MS.gene20835	0.81285	3.44E-51	-1.69E-46
MS.gene050226	MS.gene20835	0.830466	2.89E-55	-1.69E-46
MS.gene050227	MS.gene20835	0.838294	3.13E-57	-1.69E-46
MS.gene050228	MS.gene20835	0.829542	4.86E-55	-1.69E-46
MS.gene050623	MS.gene20835	-0.834112	3.62E-56	-1.69E-46
MS.gene050642	MS.gene20835	0.803143	4.01E-49	-1.69E-46
MS.gene050719	MS.gene20835	0.80339	3.57E-49	-1.69E-46
MS.gene050721	MS.gene20835	0.804184	2.44E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 42 sgRNAs with CRISPR-Local

Find 306 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACTATAGAGCCAAAGATCA+TGG	0.469285	1.4:+69726656	MS.gene20835:CDS
AAGACTGTCTCCATCATCAT+TGG	0.394370	1.4:-69727090	None:intergenic
AAGTACTCATGTCAAGACAA+TGG	0.614680	1.4:+69726974	MS.gene20835:CDS
AAGTCAAGAGAGAGAAATGA+TGG	0.429496	1.4:+69727037	MS.gene20835:CDS
AATGTGGTAAAACAAGTCGT+TGG	0.554279	1.4:+69726700	MS.gene20835:CDS
AATTATGTGACGACATCTTA+GGG	0.454312	1.4:+69726901	MS.gene20835:CDS
AATTGTTTGCTGGAAACAAG+TGG	0.575262	1.4:+69726999	MS.gene20835:CDS
ACAACTTCACAATCTAGTGA+AGG	0.654135	1.4:-69726813	None:intergenic
ACCTGTTACCATAAGTAGTG+TGG	0.624649	1.4:-69722302	None:intergenic
AGAGAAAATAATTGATGACG+TGG	0.669316	1.4:+69726839	MS.gene20835:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATGAATAAGAGATCACG+TGG	-	chr1.4:69722771-69722790	None:intergenic	30.0%
AACGTGCACAAAATGATAAT+TGG	+	chr1.4:69725220-69725239	MS.gene20835:intron	30.0%
AATGCTTGTCTACCATTATA+AGG	+	chr1.4:69724865-69724884	MS.gene20835:intron	30.0%
AATTATGTGACGACATCTTA+GGG	+	chr1.4:69726901-69726920	MS.gene20835:CDS	30.0%
ACAATAAGACTATGTGCAAT+GGG	-	chr1.4:69723874-69723893	None:intergenic	30.0%
ACGTGCACAAAATGATAATT+GGG	+	chr1.4:69725221-69725240	MS.gene20835:intron	30.0%
ACGTTTATCAATTCATCAGT+AGG	-	chr1.4:69725205-69725224	None:intergenic	30.0%
ATAAGAAATAAAAGGTGGTG+GGG	-	chr1.4:69723240-69723259	None:intergenic	30.0%
ATGACATTAATGAAGACAGT+GGG	+	chr1.4:69726940-69726959	MS.gene20835:CDS	30.0%
CATTGTAAATGGTCTAATAG+AGG	-	chr1.4:69723088-69723107	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	69722193	69727107	69722193	ID=MS.gene20835
chr1.4	mRNA	69722193	69727107	69722193	ID=MS.gene20835.t1;Parent=MS.gene20835
chr1.4	exon	69722193	69722322	69722193	ID=MS.gene20835.t1.exon1;Parent=MS.gene20835.t1
chr1.4	CDS	69722193	69722322	69722193	ID=cds.MS.gene20835.t1;Parent=MS.gene20835.t1
chr1.4	exon	69726548	69727107	69726548	ID=MS.gene20835.t1.exon2;Parent=MS.gene20835.t1
chr1.4	CDS	69726548	69727107	69726548	ID=cds.MS.gene20835.t1;Parent=MS.gene20835.t1

Gene Sequence

>MS.gene20835

GATTATTAAGGTGCGGGAAGAGTTGTAGACTAAGATGGATTAACTATTTGAGAACTGACCTCAAAAGAGGAAACATATCTGCTCAAGAGGAAGACACCATTGTGAAGCTCCACACTACTTATGGTAACAGGTTTGTGCTGCTTGCATTGAATATTATAGTTTTAATTATAGATGAAAATAAGTTTACCAACTTTAGCACTTTTCTTAAAGAAAAATTTACCCTTTTTATTTAGGATCATTCTTGCCCACGTATATTTAGCCTATGTCTTTATTTGTAATAATGTAGATGGAGACTACTACCCATCAAATTTAAGAGTTTTTTTATTTTATGAAAAATACAAATTTGAGAGTTGACCGTAGGATGTGGGTATGGCATGGTAGCTATTTTTTTTTTTTTTTTGTAACTTTGTCGTTAATTTCCTTCAAAAAAAACTTTGTCATTAATTATTTCTTGGTAACTAACTTTGTCATTAATTGATCTAAATTTGTCATTCATAACTTTAGAATTGCTTTTTCTAGGTTCTACTGGAATTTACATTTTATTTAATTCACATTACCAACACAAAATTAATATTCCACGTGATCTCTTATTCATTTTCTTTTCCACACTCTTCATTTACATATTTTAAAGTTAGGGTTAAAAGTGAGAGCTTGCCGGATACTACGGGGAAGCTGTTTTTTTGTCTATTTTAATTTTCCCATCACTTGCAAAATGCGTGGCTTTATTAAAAAATTTAAAATACTCGTGTCAGGTTGTCATTGTTTCCAATTAAACTGGAATAATTTTTCAATAAAAAGTAAACTGCAATGTTGTACCTTTGTTTTTTCGTAAGAAAAATCCAGTATCGTACGTACCTATGTTTTGGAATAATTTGTGGGCCCTAAAACCCACCCTCTATTAGACCATTTACAATGGTTAACCCCATTCAACACCCTTCAACACCCACTTTTTCAATTCCCAACACTCCACATCATTTTCTCTCTCTTAATTCAACACTCATTCAACTTTAATCTCTCCAATGGTTTTTTTCATTCAACACTCTACCCCACCACCTTTTATTTCTTATTCTTATTTAATTTTATATTTTTGTTTTTATAATTACATAAAATTACAATTATCAATTATAATTAAATTAAATAAAGAAAAACTGAAAAATATTTGAAATTTTTTTATTTAAATAATTTATTTTTATTTTCACTAAAAAGAAGGTTAAAACTTCACTTAGTTTACTAATAGAAATATATAATAAGAAGAAGATAGTGAAAAACTTGGTATTTTTTTTTTGTCCAAATGAAATGAACCAAGTCTCTATTTATAGAGAAAAAAAAATCATGAATTTTGATATATATATTTTTTTTTTTAAAATTATTTTTCAACAAAATAATTGATGTACAATTATTAAAATTATAACAATCTGGGCAACCAATCAAGTAGCTACATGTGTCCCTTATAATTCCAAAATTCTTCTTCTCTCTCCATCCTCTGTTTCCAACGCGCGCTGTCTCCTTGTTTGCCACACTCTCCAATTTCGGACCACTTAGAACGTGACACGTGGCATATCGGCAGCTTTCAATTGTGTTGAATGTATTCAACACCTCTCTCATCCATGTCATGCTTGCAGCACATTAAACACTCCCATTGGCCTGGTTTTGCTTGTTGAATGTCAGATTCAACTCCCCCATTGCACATAGTCTTATTGTACCTAAAATAATAACGTGTAGTGTTTTTTTACCACTAATTAATAACGTGTAGTTTTTTATTTACCCAAAATAATAACGTGTAGTTATATTTTTACCACAAAATAATAACGTGTAGAATTTTTTACTGATATAATAACGTGTAAATAAACAATAGTATTCTTTTTTAGACATGTGCTAATGACACCTCTCCAAATAAAACTACTAAATTGTTATTTTGAATGAAATAATATAATCTTTTTTTTTTTGGTAACAGAAATAATATAATCTTTAGTTTCATTGAACAATTTTTTTTTTTTTAAATAAATTTTGTTGACACTAATCACACCAAAAAGTTATTCCTGGATCCGCTCCTCAACAAACGAATGTCAGAAATTAACTGAAGTCTAAAATAACCTGCAAACTATTCTTATACTGGTATAAAACAGTACTATTATAGTAATTTCAAAGACTATGATTGTTTCCTCAAAAAATAATAAGTACTAGTAATTTCAAGGACATATTTTTAACCAGTTATTTCTGCTGCCGGATTTTCTTTATAATGTCCTAATAAAGGCCAACAGTAGTACTGATGAATAGGGTTGGGAATATGCCAGGTCAGGCCAGACTTTGATAGGCCCGAGCCTGACCTACGAAAAAAATTGTAAGCCTGAGTCTGGCCTATAGCCTTTCATAGGCCTATTGTTTTGACCTGGCCTGACATATCTAAAAGTCTGGCCTAGCCTGAAAGCCTATTTACAGGCCTACTTATTATAAAAGTCATTAAACATTCTATTTTATCTACTTTTAAATAGGCTAAATACACCCTCCGGTCACTAATATAAGCAAAAATCCAATTTCTAGGTTCATTCAATTAATGATGTATGTAGTCTTTATTATAGGCTACATACATCATTTATTGAATGAACCTAGAAAGTGGATTTTTGCTTATATTAGTGACCGGAGGGTGTAGGCTTTAAAGCCTATTTCATTGTAATGCTTGTCTACCATTATAAGGCCTTAAAAGCCTATTTCACTATAAGGCCTTAAAGCCTATATTTAAAAAGTCTATTATTTGAGTTGTTTCTTTATTTTTATGCTTAATATAAATTATATTTTATTATAAATAAAAAATAAATTTTAATAACATGCATAAACAGGCCGGCCTATTAGGTTTCGTAGGCTTTTTTGATAGCCTAAGCTTGACCTATTTACTTAAATAGGATTTTTCAAAAGCCTAAGCCTAGCCTTTTTAATAAACAGGCCAGGTCAGACCAGGCTTAAACAAGCCAGATCGTAGGCCCCTGTAGGCCGGTCTGGCCTATTCCCAACCCTACTGATGAATTGATAAACGTGCACAAAATGATAATTGGGGTATATTTGTCCTAGTGGTCTTGTTTCGATCTAATATCTCTTAACTAATAATTCTCTCTCATCAAAATAATTTATTTTAATTATTTATTTATTATTCTTTTTCATCTAAAATACACAAATGTCACCAAAGTCACCAAAACTTCAAGTCACTCAAATATTTTCCCATTCGTCCTGCTGACAATAGTATTCAACTAAGTGTATTTTACTCTCTCTCTTTTTATGTAAAACATTTTTCTTGAGAAGCAAGATCATCACTTTACTTTTCCTCCCTCTATTTTAAAGATTTTGTTGGATAATTTAAAGAGTGTCAGAGTAACACTGAACTACTCCCGTGTTCTTCTATCAAATATTCTTTTTTTCATATTCATTGAATAACCGATGTATTTGAACTATATTATAAATATATATTAATTATCAATGGATTTTTTTTTTTATATATAAAACTTAAAAAGTAATGATTTCTTAAGAAACATTGACATTGGCACTATACTTGGTTGAAGTAGACAAATAATTAGCATGAAAGCCAACTGTTTTCCTATAAAGTATTTTATTTTTTGGATCATGTTAAGAAATATTAAAGATTCTCTCAAAAAGAAAAACAAATATCATAAGGACAGTTTTTTAAAGTAAAAAGAATGATAAATTTTATATAGAAGATTTTAGTTTTACAGAATTATGTAGAAGAAGTTAATTTCTTTAGTTTAAATATATTGAATGCAGAATTCTTAAGATAATTTTTTTTTAACAAGTGCCTTAAGTAATTAGCATTTTCCTTATTTTTTTAAGTAGGAAAAAGATATTTGTGTGTGACATATAAAAACATATAATGCATAAAGTAGTTACGTTAGCATAGCTCGGTTGGTAATATAATATACGGAGATTAAGATTTGAACCCTAGATTTTCTACTTATTCAACGATACAAACGGATAGAGTACTCTAAACAAACACTGAGTAGTACTATTTTTTGATGGAGATATTAAAGTTGTCCCCGTCTTTTTTGGGCACTTTAAAAATCATGGATTAATTATTATAATAATGCCCACATGCCTAACAATTTGGTGAAACATTAAATGAGGTTCATGCTAGTAGTACGTATTATTTTTTGGAAGCAAACAAAAAAAATCACAAATTGGTCTTTGAATATGGGTTTGGATTATTTTCTTAATAGTAACAAACATCATTTTGCTAATAAATTTTGGCATAAAGTGGTGGTACGGAACAAAACAAGTGAAAAAGAATATACTAGTATATACACAAGGAAGAAATTATGATTTGACGTTTATTGGGTTTGTGTGATTTTCAGGTGGTCCATGATAGCTAGCCACTTGCCAGGAAGAACGGACAATGAAATTAAAAACCATTGGAATTCTCACCTCAGCAGAAAAATCTACAGTTTCTCAAAAATTTTCACAACTATAGAGCCAAAGATCATGGATGTTCGTCCTCCTAAGCGTAAATGTGGTAAAACAAGTCGTTGGGCCATGAAGAAGAACAAAAGCTACAAAAAACAAACCGTTATTAATACTAAAGAAAATTATATTGAACCAGAAGTTCAAATTCCACGTACTCCTTCACTAGATTGTGAAGTTGTTACAGAGAAAATAATTGATGACGTGGAGGTAAAAACAACACATGATGAGAAAGAAACAACGTATGAATTATGTGACGACATCTTAGGGCTGAGTGAGTTGTTAGATGACATTAATGAAGACAGTGGGGCATTGTGCATAAGTACTCATGTCAAGACAATGGAAAATTGTTTGCTGGAAACAAGTGGGTCTGTTTCAAATTTAAGTCAAGAGAGAGAAATGATGGGTGATGGAGGTGAAGAAAATGAAAGAACAACCAATGATGATGGAGACA

Protein sequence

>MS.gene20835.t1

DYUGAGRVVDUDGLTIUELTSKEETYLLKRKTPLUSSTLLMVTGGPUULATCQEERTMKLKTIGILTSAEKSTVSQKFSQLUSQRSWMFVLLSVNVVKQVVGPURRTKATKNKPLLILKKIILNQKFKFHVLLHUIVKLLQRKULMTWRUKQHMMRKKQRMNYVTTSUGUVSCUMTLMKTVGHCAUVLMSRQWKIVCWKQVGLFQIUVKREKUWVMEVKKMKEQPMMMET