AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene22597

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene22597.t1 MTR_5g011050 96.875 800 25 0 1 800 55 854 0.0 1632
MS.gene22597.t1 MTR_5g011060 91.500 800 62 1 1 800 55 848 0.0 1539
MS.gene22597.t1 MTR_8g033080 69.021 807 240 4 1 800 246 1049 0.0 1189
MS.gene22597.t1 MTR_7g075910 68.742 803 244 4 1 800 316 1114 0.0 1181
MS.gene22597.t1 MTR_8g088690 54.282 794 341 7 20 799 56 841 0.0 875
MS.gene22597.t1 MTR_3g114840 53.934 788 339 9 31 799 68 850 0.0 868
MS.gene22597.t1 MTR_5g023050 52.764 796 331 10 31 793 81 864 0.0 865
MS.gene22597.t1 MTR_8g033080 67.221 601 188 3 1 595 246 843 0.0 863
MS.gene22597.t1 MTR_3g114840 54.274 702 297 9 31 713 68 764 0.0 763
MS.gene22597.t1 MTR_2g103730 46.667 795 377 16 20 789 25 797 0.0 719
MS.gene22597.t1 MTR_4g010650 47.204 769 369 14 36 789 50 796 0.0 715
MS.gene22597.t1 MTR_3g107360 46.134 776 374 16 36 790 59 811 0.0 676
MS.gene22597.t1 MTR_3g107320 44.948 772 386 16 36 790 66 815 0.0 663
MS.gene22597.t1 MTR_2g100250 41.612 769 374 22 36 789 36 744 0.0 544
MS.gene22597.t1 MTR_8g016160 39.693 781 379 24 36 799 39 744 9.48e-163 490
MS.gene22597.t1 MTR_1g083620 31.159 276 138 11 450 717 455 686 8.64e-22 101
MS.gene22597.t1 MTR_1g083620 28.287 251 118 7 201 428 130 341 5.62e-18 89.4
MS.gene22597.t1 MTR_1g083620 31.159 276 138 11 450 717 715 946 1.25e-21 101
MS.gene22597.t1 MTR_1g083620 28.287 251 118 7 201 428 390 601 4.95e-18 89.7
MS.gene22597.t1 MTR_2g435560 29.614 233 119 7 192 407 381 585 1.26e-19 95.1
MS.gene22597.t1 MTR_2g435560 34.171 199 98 8 492 684 784 955 1.76e-17 88.2
MS.gene22597.t1 MTR_2g435560 29.614 233 119 7 192 407 246 450 1.52e-19 94.7
MS.gene22597.t1 MTR_2g435560 34.171 199 98 8 492 684 649 820 1.24e-17 88.6
MS.gene22597.t1 MTR_5g023040 56.522 69 30 0 304 372 800 868 3.09e-18 90.1
MS.gene22597.t1 MTR_8g024030 61.017 59 16 1 455 513 1 52 7.42e-15 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene22597.t1 AT2G42010 69.863 803 232 4 1 800 288 1083 0.0 1219
MS.gene22597.t1 AT2G42010 67.874 828 231 5 1 800 288 1108 0.0 1206
MS.gene22597.t1 AT4G11850 67.327 808 250 5 1 800 57 858 0.0 1161
MS.gene22597.t1 AT4G00240 66.625 803 258 4 1 800 132 927 0.0 1161
MS.gene22597.t1 AT4G00240 67.478 781 248 3 23 800 115 892 0.0 1153
MS.gene22597.t1 AT4G00240 67.696 777 245 3 27 800 2 775 0.0 1148
MS.gene22597.t1 AT4G11840 66.049 810 261 6 1 800 61 866 0.0 1136
MS.gene22597.t1 AT4G11830 66.292 801 256 6 9 800 61 856 0.0 1122
MS.gene22597.t1 AT4G11830 66.878 788 248 5 22 800 41 824 0.0 1122
MS.gene22597.t1 AT4G11840 64.851 808 244 6 1 800 61 836 0.0 1103
MS.gene22597.t1 AT4G35790 53.585 795 330 12 31 799 75 856 0.0 858
MS.gene22597.t1 AT4G35790 52.854 806 330 13 31 799 75 867 0.0 852
MS.gene22597.t1 AT4G11830 65.630 579 192 4 9 585 61 634 0.0 808
MS.gene22597.t1 AT4G11830 66.370 562 182 4 9 568 61 617 0.0 794
MS.gene22597.t1 AT3G15730 46.503 772 373 15 36 790 51 799 0.0 713
MS.gene22597.t1 AT1G52570 46.364 770 377 15 36 790 51 799 0.0 708
MS.gene22597.t1 AT1G52570 46.364 770 377 15 36 790 51 799 0.0 708
MS.gene22597.t1 AT1G52570 46.364 770 377 15 36 790 51 799 0.0 708
MS.gene22597.t1 AT4G35790 52.818 621 262 10 31 626 75 689 0.0 659
MS.gene22597.t1 AT5G25370 45.774 769 380 14 36 789 62 808 0.0 655
MS.gene22597.t1 AT5G25370 45.774 769 380 14 36 789 62 808 0.0 655
MS.gene22597.t1 AT5G25370 45.774 769 380 14 36 789 62 808 0.0 655
MS.gene22597.t1 AT5G25370 46.257 748 368 13 57 789 5 733 0.0 648
MS.gene22597.t1 AT1G55180 38.981 785 392 24 28 789 8 728 1.12e-168 505
MS.gene22597.t1 AT1G55180 39.147 774 387 23 36 789 41 750 6.47e-168 504
MS.gene22597.t1 AT3G16785 34.146 205 96 8 489 684 756 930 5.28e-19 92.8
MS.gene22597.t1 AT3G16785 30.085 236 115 7 208 427 390 591 1.53e-18 91.7
MS.gene22597.t1 AT3G16785 34.146 205 96 8 489 684 756 930 5.28e-19 92.8
MS.gene22597.t1 AT3G16785 30.085 236 115 7 208 427 390 591 1.53e-18 91.7
MS.gene22597.t1 AT3G16785 34.146 205 96 8 489 684 756 930 6.26e-19 92.8
MS.gene22597.t1 AT3G16785 30.085 236 115 7 208 427 390 591 1.65e-18 91.3
MS.gene22597.t1 AT3G16785 34.146 205 96 8 489 684 756 930 6.26e-19 92.8
MS.gene22597.t1 AT3G16785 30.085 236 115 7 208 427 390 591 1.65e-18 91.3
MS.gene22597.t1 AT3G16785 34.146 205 96 8 489 684 756 930 6.65e-19 92.8
MS.gene22597.t1 AT3G16785 30.085 236 115 7 208 427 390 591 1.68e-18 91.3
MS.gene22597.t1 AT3G16785 34.146 205 96 8 489 684 756 930 8.62e-19 92.4
MS.gene22597.t1 AT3G16785 30.085 236 115 7 208 427 390 591 1.43e-18 91.7
MS.gene22597.t1 AT3G05630 32.068 237 121 10 492 717 714 921 1.60e-17 88.2
MS.gene22597.t1 AT3G05630 28.634 227 104 6 204 407 381 572 2.16e-16 84.3

Find 155 sgRNAs with CRISPR-Local

Find 261 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAATTGTTTCTGTCTTAA+AGG 0.145411 5.2:+3879837 None:intergenic
ACCCTTTGTATTGCATCTTT+TGG 0.233281 5.2:+3877748 None:intergenic
TTCTTGGCTCGTCATATAAC+TGG 0.241998 5.2:-3877531 MS.gene22597:CDS
GATGGAAAAGATTGTACTTT+AGG 0.258837 5.2:-3879502 MS.gene22597:CDS
ACTAAACAGGGTTCTGTTAC+TGG 0.267976 5.2:-3878144 MS.gene22597:intron
TGGAAATCCTTTCACAGAAT+TGG 0.280674 5.2:+3877777 None:intergenic
TAGTGCCTTCCATTGATCTT+TGG 0.281191 5.2:+3876552 None:intergenic
TTTCCCATTCTCAATACTAA+TGG 0.285929 5.2:-3879865 MS.gene22597:CDS
CTCTGACATTATCGGCATTC+AGG 0.287400 5.2:-3877956 MS.gene22597:CDS
CTTCCTAGTTTGAGGGTTGA+TGG 0.288084 5.2:-3879661 MS.gene22597:CDS
AATGGATGAAAATGTTTATA+TGG 0.293818 5.2:+3876166 None:intergenic
CACCAACACCATTACTATAA+AGG 0.306813 5.2:+3879776 None:intergenic
TAACCAACGCTCCTCAAAAT+TGG 0.309829 5.2:+3878053 None:intergenic
GGATGATGAATATGTGTTAA+TGG 0.311012 5.2:-3876591 MS.gene22597:CDS
CTACTCAGAGGATTCTCTTT+TGG 0.327286 5.2:-3877131 MS.gene22597:CDS
CTCCGACACATTCTCTCTTT+AGG 0.344293 5.2:-3878710 MS.gene22597:CDS
AAAATTGTTTCTGTCTTAAA+GGG 0.345853 5.2:+3879838 None:intergenic
GGTCATTGAGTGAGTATAAC+TGG 0.346798 5.2:-3876355 MS.gene22597:CDS
CAAGGAGACTTGGCATGTTC+AGG 0.356759 5.2:-3877908 MS.gene22597:intron
GTGCTTCTTTGCCCAAGATC+TGG 0.359455 5.2:-3879153 MS.gene22597:CDS
AACAATTTACAAGGCATTAG+AGG 0.367522 5.2:-3876898 MS.gene22597:CDS
ACTACAATGTTAGTCTCATT+AGG 0.367770 5.2:-3879534 MS.gene22597:CDS
GATAGAATCTCTGACATTAT+CGG 0.371058 5.2:-3877964 MS.gene22597:CDS
CGTCGATTGGTCTATATTGT+TGG 0.373921 5.2:-3879568 MS.gene22597:CDS
CTTTCATAATCCTAACTTTG+TGG 0.375521 5.2:-3878661 MS.gene22597:intron
TTGAATGTGTGAGAAGAATA+AGG 0.385372 5.2:-3876376 MS.gene22597:CDS
TGATGTTGGTGGGAACATAA+AGG 0.391320 5.2:-3876219 MS.gene22597:CDS
CATATCAGCCTAATCATACT+TGG 0.394543 5.2:-3876505 MS.gene22597:CDS
GATTTGCATTCCAAAGTTGA+TGG 0.398771 5.2:-3878099 MS.gene22597:CDS
ATGATATATGTTCATTCAAA+AGG 0.399907 5.2:-3876623 MS.gene22597:CDS
GCCCTGAGGTTTAGAATGCT+TGG 0.401702 5.2:+3876478 None:intergenic
ACCAACACCATTACTATAAA+GGG 0.402130 5.2:+3879777 None:intergenic
GTACTTGAGGGTACACCTTC+AGG 0.405376 5.2:+3877156 None:intergenic
TTGAAGTGCTGATTCCAAAC+AGG 0.405508 5.2:+3880021 None:intergenic
GTATAACTGGAGACAATATT+TGG 0.407854 5.2:-3876342 MS.gene22597:CDS
CTCACACATTCAATGCTCTC+TGG 0.408766 5.2:+3876386 None:intergenic
GGATAACTAACCACAAAGTT+AGG 0.408900 5.2:+3878651 None:intergenic
GAAACAATGAGAACCCTGTT+TGG 0.412454 5.2:-3880035 MS.gene22597:CDS
TTTATGTTCCCACCAACATC+AGG 0.412800 5.2:+3876221 None:intergenic
AACCAAGCATTCTAAACCTC+AGG 0.413728 5.2:-3876480 MS.gene22597:CDS
AAGGTTGTCTTCCTAGTTTG+AGG 0.414532 5.2:-3879669 MS.gene22597:CDS
TCAAATGTTGTAAGAGCTAC+TGG 0.417660 5.2:-3876786 MS.gene22597:CDS
ATTGTTGGTTCACAGATTAT+TGG 0.418383 5.2:-3879943 MS.gene22597:CDS
ATTGAACAGAACTTGGTTTG+TGG 0.418647 5.2:-3877646 MS.gene22597:intron
TGCCCAAGATCTGGAGGAAA+AGG 0.418793 5.2:-3879144 MS.gene22597:CDS
CATTGATCTTTGGTTTATGT+TGG 0.423427 5.2:+3876562 None:intergenic
CTACAATGTTAGTCTCATTA+GGG 0.423726 5.2:-3879533 MS.gene22597:CDS
AGGTTGTCTTCCTAGTTTGA+GGG 0.429483 5.2:-3879668 MS.gene22597:CDS
TTTCAAGCACTCTTCAGTTA+GGG 0.433706 5.2:-3879175 MS.gene22597:CDS
TTGCTTAATTGTCAGGAAGC+TGG 0.438888 5.2:-3878849 MS.gene22597:intron
GATGATGAATATGTGTTAAT+GGG 0.443827 5.2:-3876590 MS.gene22597:CDS
ACATAGCTTGCTCAAACAAC+AGG 0.447421 5.2:-3879121 MS.gene22597:intron
AAAACAATGCAAATGATGTA+TGG 0.449561 5.2:-3876921 MS.gene22597:CDS
TCAGTATACACCTGTTGATA+AGG 0.452338 5.2:-3879803 MS.gene22597:CDS
TCACAGATTATTGGTGCAGT+TGG 0.452560 5.2:-3879934 MS.gene22597:CDS
GATTGGTCTATATTGTTGGT+TGG 0.456005 5.2:-3879564 MS.gene22597:CDS
GATGTTGGTGGGAACATAAA+GGG 0.457449 5.2:-3876218 MS.gene22597:CDS
TATGTAACTGTTTCTGTAGC+TGG 0.461426 5.2:-3880087 MS.gene22597:CDS
AAACTTGGTGGCAAAATTGA+AGG 0.468870 5.2:-3880141 MS.gene22597:CDS
TCTGATGCAAGATGTGCAAC+AGG 0.468989 5.2:+3879994 None:intergenic
GTAAAAGACAATGATATTGT+TGG 0.472603 5.2:-3879958 MS.gene22597:CDS
CCCACTTGAGGTTGATTCAA+AGG 0.475652 5.2:-3876279 MS.gene22597:CDS
ATTGATTCCAATTCTGTGAA+AGG 0.482984 5.2:-3877784 MS.gene22597:CDS
TTTCCATTAGTATTGAGAAT+GGG 0.483559 5.2:+3879862 None:intergenic
CTAAGTGGAAAATATGTAGC+AGG 0.483576 5.2:+3879736 None:intergenic
GGCAGCAGGACCATCAACTT+TGG 0.486946 5.2:+3878089 None:intergenic
CCTTGGCAATCGCGAGCTCT+CGG 0.487391 5.2:-3876823 MS.gene22597:CDS
GGAGGTCTTGATTTATGTCT+CGG 0.489146 5.2:-3878744 MS.gene22597:CDS
TAAAGGGCTACCTTATCAAC+AGG 0.489987 5.2:+3879793 None:intergenic
TGTCATGGTACAAAAGTTGA+AGG 0.495164 5.2:-3879892 MS.gene22597:CDS
CCTACTTCTAACAGCATGCT+TGG 0.497597 5.2:-3879418 MS.gene22597:CDS
CCACTTGAGGTTGATTCAAA+GGG 0.501387 5.2:-3876278 MS.gene22597:CDS
AAAATTGGTGAGGATGTCAT+AGG 0.508031 5.2:+3878068 None:intergenic
CCACCATCAACCCTCAAACT+AGG 0.511174 5.2:+3879658 None:intergenic
AATAAGTCAGGCGCGTCGAT+TGG 0.511402 5.2:-3879581 MS.gene22597:CDS
GTCATTGTGGATGCTGATGC+TGG 0.513953 5.2:-3878798 MS.gene22597:CDS
CTCTGAGTAGCTGTACTTGA+GGG 0.515931 5.2:+3877144 None:intergenic
TACAAGGCATTAGAGGAGGC+TGG 0.516518 5.2:-3876891 MS.gene22597:CDS
GCCCTTTATAGTAATGGTGT+TGG 0.518091 5.2:-3879778 MS.gene22597:CDS
GCATTCTAAACCTCAGGGCC+AGG 0.518428 5.2:-3876474 MS.gene22597:CDS
CCAAGCATGCTGTTAGAAGT+AGG 0.522134 5.2:+3879418 None:intergenic
CTCATTGTTTCTAATTACAA+AGG 0.522279 5.2:+3880047 None:intergenic
ACCAAAAGATGCAATACAAA+GGG 0.524318 5.2:-3877749 MS.gene22597:intron
CTCCTATGTGTTCACTCCAT+AGG 0.524544 5.2:+3876432 None:intergenic
TCCTATGTGTTCACTCCATA+GGG 0.526136 5.2:+3876433 None:intergenic
AACAGTTACATACGGATCAC+TGG 0.528942 5.2:+3880098 None:intergenic
CCCTTTGAATCAACCTCAAG+TGG 0.531899 5.2:+3876278 None:intergenic
TATCTTCGATGCAATAAGTC+AGG 0.532907 5.2:-3879593 MS.gene22597:CDS
CAACATAAACCAAAGATCAA+TGG 0.533533 5.2:-3876561 MS.gene22597:CDS
AAATCATGCCATGGTTGTCT+TGG 0.535876 5.2:+3878117 None:intergenic
TACTGGACAAAACAATCCTC+AGG 0.536448 5.2:-3876769 MS.gene22597:intron
AAACCTCAGGGCCAGGTGCA+TGG 0.544702 5.2:-3876467 MS.gene22597:CDS
GTGAGGATGTCATAGGCAGC+AGG 0.549590 5.2:+3878075 None:intergenic
TTGGTTGCCCAAGTATGATT+AGG 0.552687 5.2:+3876497 None:intergenic
AAGGTAGCCCTTTATAGTAA+TGG 0.553403 5.2:-3879784 MS.gene22597:CDS
CTCATTAGGGATACTAGAGA+TGG 0.553430 5.2:-3879520 MS.gene22597:CDS
GAGAGTGCTTCTACTTGTGT+GGG 0.553897 5.2:-3879446 MS.gene22597:CDS
TGCAAACAACTTAATTCCGA+TGG 0.554309 5.2:-3877253 MS.gene22597:CDS
AGAGACACAGAAATTGCAAT+GGG 0.556833 5.2:-3876530 MS.gene22597:CDS
CCTCTGAGTAGCTGTACTTG+AGG 0.560599 5.2:+3877143 None:intergenic
CATGATGTGAGTTATGAGAA+TGG 0.562602 5.2:-3879631 MS.gene22597:CDS
TCTTGGCTCGTCATATAACT+GGG 0.566567 5.2:-3877530 MS.gene22597:CDS
TCATTCAAAAGGAATGATAG+TGG 0.571139 5.2:-3876612 MS.gene22597:CDS
TGTATATTGTGATTCCTATG+TGG 0.572128 5.2:-3877179 MS.gene22597:CDS
TGTGAAACATTCCCTGATGT+TGG 0.574572 5.2:-3876233 MS.gene22597:CDS
TGAAAATGAGTATGAACCAC+AGG 0.574704 5.2:-3876865 MS.gene22597:CDS
GTGATTCCTATGTGGCCTGA+AGG 0.577680 5.2:-3877171 MS.gene22597:CDS
TGAGAGTGCTTCTACTTGTG+TGG 0.580023 5.2:-3879447 MS.gene22597:CDS
CTTCTTTGCCCAAGATCTGG+AGG 0.588065 5.2:-3879150 MS.gene22597:CDS
TCTCCTTGTTATGCTCATCA+AGG 0.588490 5.2:+3877923 None:intergenic
GTTATGAGAATGGAAATTGT+TGG 0.588503 5.2:-3879621 MS.gene22597:CDS
AACCAAAAGATGCAATACAA+AGG 0.589106 5.2:-3877750 MS.gene22597:CDS
GGTACACCTTCAGGCCACAT+AGG 0.590249 5.2:+3877165 None:intergenic
CTTTATAGTAATGGTGTTGG+TGG 0.591047 5.2:-3879775 MS.gene22597:CDS
CAAGATGCTCATGTTCCACA+AGG 0.591161 5.2:-3879688 MS.gene22597:CDS
TTTACTGAAATACCCACTTG+AGG 0.593142 5.2:-3876291 MS.gene22597:CDS
ATGAGCATAACAAGGAGACT+TGG 0.594448 5.2:-3877918 MS.gene22597:CDS
GAAACATTCCCTGATGTTGG+TGG 0.600474 5.2:-3876230 MS.gene22597:CDS
CCGAGAGCTCGCGATTGCCA+AGG 0.601535 5.2:+3876823 None:intergenic
GATGTATGGAACAATTTACA+AGG 0.602832 5.2:-3876907 MS.gene22597:CDS
TCTTCTCAAAGCTAAATCAC+AGG 0.604747 5.2:-3879476 MS.gene22597:CDS
ATATCAGCCTAATCATACTT+GGG 0.606198 5.2:-3876504 MS.gene22597:CDS
GCTACAGAAACAGTTACATA+CGG 0.608100 5.2:+3880090 None:intergenic
GAGTGAACACATAGGAGGTG+TGG 0.608475 5.2:-3876426 MS.gene22597:CDS
GGCATTGTAAAGCCTCTCGT+TGG 0.613088 5.2:-3876257 MS.gene22597:CDS
TGGGATTCTTTCAAAGACCT+CGG 0.614331 5.2:-3877511 MS.gene22597:intron
TGAAGTGCTGATTCCAAACA+GGG 0.616502 5.2:+3880022 None:intergenic
CAGAATTGGAATCAATAGAA+CGG 0.617588 5.2:+3877791 None:intergenic
CTCAAAGCTAAATCACAGGA+AGG 0.618361 5.2:-3879472 MS.gene22597:CDS
CCTAGTTTGAGGGTTGATGG+TGG 0.621734 5.2:-3879658 MS.gene22597:CDS
ATGGTTATAGAATGTCCCTA+TGG 0.625370 5.2:-3876448 MS.gene22597:CDS
AATGTTTCACAGCCAACGAG+AGG 0.625693 5.2:+3876245 None:intergenic
TTGTTATGCTCATCAAGGCA+AGG 0.628139 5.2:+3877928 None:intergenic
AATTTACAAGGCATTAGAGG+AGG 0.630851 5.2:-3876895 MS.gene22597:CDS
TTGGAATGCAAATCATGCCA+TGG 0.632340 5.2:+3878108 None:intergenic
TTATGTTCCCACCAACATCA+GGG 0.635043 5.2:+3876222 None:intergenic
ACATTCTATAACCATGCACC+TGG 0.636369 5.2:+3876456 None:intergenic
AACGCTCCTCAAAATTGGTG+AGG 0.637134 5.2:+3878058 None:intergenic
AAGAAATTCAAGTAGTCCTG+TGG 0.640692 5.2:+3876849 None:intergenic
TAGAGACACAGAAATTGCAA+TGG 0.640880 5.2:-3876531 MS.gene22597:CDS
TCATCAGAAGACAGTCATTG+TGG 0.641162 5.2:-3878811 MS.gene22597:CDS
ACCAAGCATTCTAAACCTCA+GGG 0.641414 5.2:-3876479 MS.gene22597:CDS
TAACCATGCACCTGGCCCTG+AGG 0.642844 5.2:+3876464 None:intergenic
GTCCTAAAGAGAGAATGTGT+CGG 0.643759 5.2:+3878708 None:intergenic
ATAAACCAAAGATCAATGGA+AGG 0.645459 5.2:-3876557 MS.gene22597:CDS
ATGAAAGTCATCTTTGTGTG+TGG 0.650414 5.2:+3878677 None:intergenic
TTGCCTTGATGAGCATAACA+AGG 0.672972 5.2:-3877926 MS.gene22597:CDS
CTGGTTGTCCAAGACAACCA+TGG 0.675621 5.2:-3878125 MS.gene22597:CDS
CTATGGAGTGAACACATAGG+AGG 0.681727 5.2:-3876431 MS.gene22597:CDS
CCTTTGAATCAACCTCAAGT+GGG 0.682667 5.2:+3876279 None:intergenic
AAACATTCCCTGATGTTGGT+GGG 0.683000 5.2:-3876229 MS.gene22597:CDS
ACTTATGAACACTTATGACG+AGG 0.684284 5.2:-3879211 MS.gene22597:CDS
CCTCAAGTACAGCTACTCAG+AGG 0.711303 5.2:-3877143 MS.gene22597:CDS
TCCCTATGGAGTGAACACAT+AGG 0.736923 5.2:-3876434 MS.gene22597:CDS
AAACTAGGAAGACAACCTTG+TGG 0.743773 5.2:+3879673 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAATCTAAATTTTAGAA+TGG + chr5.2:3878665-3878684 None:intergenic 10.0%
!! AAACTAGTGAAAATAAAAAA+TGG + chr5.2:3877746-3877765 None:intergenic 15.0%
!! CATAAAAATTTCTATTTAGA+TGG - chr5.2:3879310-3879329 MS.gene22597:intron 15.0%
!!! TTTAGATTTTTTGTTATGTT+AGG - chr5.2:3878673-3878692 MS.gene22597:CDS 15.0%
!! AAAATGTGTTTATACATGAT+GGG - chr5.2:3877811-3877830 MS.gene22597:intron 20.0%
!! AAATCAACATTTAAGAGTTT+AGG + chr5.2:3879424-3879443 None:intergenic 20.0%
!! AAATTGAAGAAGTTTCTTTA+AGG + chr5.2:3878518-3878537 None:intergenic 20.0%
!! AATTGAAGAAGTTTCTTTAA+GGG + chr5.2:3878517-3878536 None:intergenic 20.0%
!! ATAAAACTAACTTGATCAAA+AGG + chr5.2:3879672-3879691 None:intergenic 20.0%
!! ATCAATAAATCATGGTAATT+CGG + chr5.2:3877131-3877150 None:intergenic 20.0%
!! ATGATATATGTTCATTCAAA+AGG - chr5.2:3879750-3879769 MS.gene22597:CDS 20.0%
!! CAGATAATAGAAATAGTTAA+AGG - chr5.2:3877467-3877486 MS.gene22597:intron 20.0%
!! TAAAATGTGTTTATACATGA+TGG - chr5.2:3877810-3877829 MS.gene22597:intron 20.0%
!! TATAATATATAGGTTGCAAT+AGG - chr5.2:3879058-3879077 MS.gene22597:intron 20.0%
!!! AAAATTGTTTCTGTCTTAAA+GGG + chr5.2:3876538-3876557 None:intergenic 20.0%
!!! ATTGAGAATCAATATTTTCT+TGG - chr5.2:3878826-3878845 MS.gene22597:CDS 20.0%
!!! CTATTTATGTTTCTGATATT+TGG - chr5.2:3877014-3877033 MS.gene22597:intron 20.0%
!!! TAAACTCTTAAATGTTGATT+TGG - chr5.2:3879423-3879442 MS.gene22597:CDS 20.0%
!!! TGTTTTATTTGTCATAATAG+AGG - chr5.2:3878177-3878196 MS.gene22597:intron 20.0%
!!! TTTAATTTGCATACTAAACA+GGG - chr5.2:3878217-3878236 MS.gene22597:intron 20.0%
!!! TTTTAATTTGCATACTAAAC+AGG - chr5.2:3878216-3878235 MS.gene22597:intron 20.0%
! AAAACAATGCAAATGATGTA+TGG - chr5.2:3879452-3879471 MS.gene22597:CDS 25.0%
! ACCATGATTTATTGATATGT+AGG - chr5.2:3877135-3877154 MS.gene22597:CDS 25.0%
! ACCTACATATCAATAAATCA+TGG + chr5.2:3877139-3877158 None:intergenic 25.0%
! ATAAAACAATTACAACGCAA+AGG + chr5.2:3878165-3878184 None:intergenic 25.0%
! GAAAAGGAATGAATATAACA+AGG + chr5.2:3879087-3879106 None:intergenic 25.0%
! GATGATGAATATGTGTTAAT+GGG - chr5.2:3879783-3879802 MS.gene22597:CDS 25.0%
! GCTTATAAAACCAGATTATA+TGG + chr5.2:3877846-3877865 None:intergenic 25.0%
! GTAAAAGACAATGATATTGT+TGG - chr5.2:3876415-3876434 MS.gene22597:CDS 25.0%
! GTATGGCATTAAATAAGATA+TGG - chr5.2:3877784-3877803 MS.gene22597:CDS 25.0%
! TAATGCCATACTTATAACAT+TGG + chr5.2:3877775-3877794 None:intergenic 25.0%
! TGATTTATTGATATGTAGGT+TGG - chr5.2:3877139-3877158 MS.gene22597:CDS 25.0%
!! ACATATTTTCCACTTAGAAA+AGG - chr5.2:3876643-3876662 MS.gene22597:CDS 25.0%
!! ATTCCTTTTCTTTTATTCAC+AGG - chr5.2:3879097-3879116 MS.gene22597:intron 25.0%
!! TTTCCATTAGTATTGAGAAT+GGG + chr5.2:3876514-3876533 None:intergenic 25.0%
!!! ACTGCTTTTTCTTTTTCAAA+AGG - chr5.2:3878070-3878089 MS.gene22597:CDS 25.0%
!!! AGAAAGATTTTAGCTTTCAT+TGG - chr5.2:3877608-3877627 MS.gene22597:CDS 25.0%
!!! AGGTGCAATCTTTTTAAAAA+AGG - chr5.2:3877487-3877506 MS.gene22597:intron 25.0%
!!! CAAAATTGTTTCTGTCTTAA+AGG + chr5.2:3876539-3876558 None:intergenic 25.0%
!!! CTCATTGTTTCTAATTACAA+AGG + chr5.2:3876329-3876348 None:intergenic 25.0%
!!! TCATTGTTGTTTGCATATTT+TGG - chr5.2:3879691-3879710 MS.gene22597:CDS 25.0%
!!! TTCTTTCTGTTTGATTTTGT+TGG + chr5.2:3879164-3879183 None:intergenic 25.0%
!!! TTTTCCATTAGTATTGAGAA+TGG + chr5.2:3876515-3876534 None:intergenic 25.0%
AACCAAAAGATGCAATACAA+AGG - chr5.2:3878623-3878642 MS.gene22597:intron 30.0%
ACATACGTGTCTTAGAATTT+CGG + chr5.2:3878013-3878032 None:intergenic 30.0%
ACCAAAAGATGCAATACAAA+GGG - chr5.2:3878624-3878643 MS.gene22597:intron 30.0%
ACCAACACCATTACTATAAA+GGG + chr5.2:3876599-3876618 None:intergenic 30.0%
ACGGAAGATCTTCAATTTAA+AGG + chr5.2:3878566-3878585 None:intergenic 30.0%
AGAGTCTGTAGAATTGAATT+AGG - chr5.2:3877982-3878001 MS.gene22597:CDS 30.0%
ATAAACCAAAGATCAATGGA+AGG - chr5.2:3879816-3879835 MS.gene22597:CDS 30.0%
ATATCAGCCTAATCATACTT+GGG - chr5.2:3879869-3879888 MS.gene22597:CDS 30.0%
CAACATAAACCAAAGATCAA+TGG - chr5.2:3879812-3879831 MS.gene22597:CDS 30.0%
CAGAATTGGAATCAATAGAA+CGG + chr5.2:3878585-3878604 None:intergenic 30.0%
CATTGCCAATGTTATAAGTA+TGG - chr5.2:3877767-3877786 MS.gene22597:CDS 30.0%
CCAGTTGAAAAATTATGTCA+TGG - chr5.2:3876466-3876485 MS.gene22597:CDS 30.0%
CTTTCATAATCCTAACTTTG+TGG - chr5.2:3877712-3877731 MS.gene22597:intron 30.0%
GAAAAAGAAAAAGCAGTCTA+TGG + chr5.2:3878067-3878086 None:intergenic 30.0%
GAGTAAAAACAAAATACCTG+AGG + chr5.2:3879623-3879642 None:intergenic 30.0%
GATAGAATCTCTGACATTAT+CGG - chr5.2:3878409-3878428 MS.gene22597:intron 30.0%
GATGGAAAAGATTGTACTTT+AGG - chr5.2:3876871-3876890 MS.gene22597:CDS 30.0%
GATGTATGGAACAATTTACA+AGG - chr5.2:3879466-3879485 MS.gene22597:CDS 30.0%
GCAAAGGACAACATATAAAA+TGG + chr5.2:3878149-3878168 None:intergenic 30.0%
GGATGATGAATATGTGTTAA+TGG - chr5.2:3879782-3879801 MS.gene22597:CDS 30.0%
GTATAACTGGAGACAATATT+TGG - chr5.2:3880031-3880050 MS.gene22597:CDS 30.0%
GTTATGAGAATGGAAATTGT+TGG - chr5.2:3876752-3876771 MS.gene22597:intron 30.0%
TAAAACCAGATTATATGGTG+AGG + chr5.2:3877841-3877860 None:intergenic 30.0%
TATGGAGATTAAAAATGCGA+AGG + chr5.2:3878049-3878068 None:intergenic 30.0%
TCAGTCTTACCTAAAAAACT+TGG - chr5.2:3876217-3876236 MS.gene22597:CDS 30.0%
TCATTCAAAAGGAATGATAG+TGG - chr5.2:3879761-3879780 MS.gene22597:CDS 30.0%
TGTATATTGTGATTCCTATG+TGG - chr5.2:3879194-3879213 MS.gene22597:CDS 30.0%
TTACTTCATTGAACAGAACT+TGG - chr5.2:3878720-3878739 MS.gene22597:CDS 30.0%
TTGAATGTGTGAGAAGAATA+AGG - chr5.2:3879997-3880016 MS.gene22597:CDS 30.0%
TTTCCCATTCTCAATACTAA+TGG - chr5.2:3876508-3876527 MS.gene22597:CDS 30.0%
! AACAATTTACAAGGCATTAG+AGG - chr5.2:3879475-3879494 MS.gene22597:CDS 30.0%
! ACTACAATGTTAGTCTCATT+AGG - chr5.2:3876839-3876858 MS.gene22597:CDS 30.0%
! ATTGATTCCAATTCTGTGAA+AGG - chr5.2:3878589-3878608 MS.gene22597:intron 30.0%
! ATTTTGCCACCAAGTTTTTT+AGG + chr5.2:3876229-3876248 None:intergenic 30.0%
! CATTGATCTTTGGTTTATGT+TGG + chr5.2:3879814-3879833 None:intergenic 30.0%
! CTACAATGTTAGTCTCATTA+GGG - chr5.2:3876840-3876859 MS.gene22597:CDS 30.0%
! TAACATGACACCATTTTAAG+TGG + chr5.2:3879285-3879304 None:intergenic 30.0%
! TACTTGAATTTCTTTTGCCT+TGG - chr5.2:3879533-3879552 MS.gene22597:CDS 30.0%
! TATTTTCCACTTAGAAAAGG+TGG - chr5.2:3876646-3876665 MS.gene22597:CDS 30.0%
!! ATTGTTGGTTCACAGATTAT+TGG - chr5.2:3876430-3876449 MS.gene22597:CDS 30.0%
!! CAGATGGAGTATCATTTTAT+TGG + chr5.2:3878907-3878926 None:intergenic 30.0%
!! CCATGACATAATTTTTCAAC+TGG + chr5.2:3876469-3876488 None:intergenic 30.0%
!! TCTTTTGAGTAAGTACCTAT+AGG + chr5.2:3879719-3879738 None:intergenic 30.0%
!!! AAGATTTTAGCTTTCATTGG+AGG - chr5.2:3877611-3877630 MS.gene22597:CDS 30.0%
!!! ATTGCATCTTTTGGTTCTTT+TGG + chr5.2:3878619-3878638 None:intergenic 30.0%
!!! ATTTTTAGCGCAATTTCCAT+CGG + chr5.2:3879139-3879158 None:intergenic 30.0%
!!! TGGTTTTATAAGCTTTAGCT+AGG - chr5.2:3877853-3877872 MS.gene22597:intron 30.0%
!!! TTGCATATTTTGGAACCTAT+AGG - chr5.2:3879701-3879720 MS.gene22597:CDS 30.0%
!!! TTGCTTTTTGCTTAATTGTC+AGG - chr5.2:3877517-3877536 MS.gene22597:CDS 30.0%
AAAATTGGTGAGGATGTCAT+AGG + chr5.2:3878308-3878327 None:intergenic 35.0%
AAGAAATTCAAGTAGTCCTG+TGG + chr5.2:3879527-3879546 None:intergenic 35.0%
AAGGTAGCCCTTTATAGTAA+TGG - chr5.2:3876589-3876608 MS.gene22597:CDS 35.0%
ACTTATGAACACTTATGACG+AGG - chr5.2:3877162-3877181 MS.gene22597:CDS 35.0%
AGAGACACAGAAATTGCAAT+GGG - chr5.2:3879843-3879862 MS.gene22597:CDS 35.0%
ATGAAAGTCATCTTTGTGTG+TGG + chr5.2:3877699-3877718 None:intergenic 35.0%
ATGGTTATAGAATGTCCCTA+TGG - chr5.2:3879925-3879944 MS.gene22597:CDS 35.0%
ATTGCCTATTCAAAAGTAGC+AGG + chr5.2:3877078-3877097 None:intergenic 35.0%
CACCAACACCATTACTATAA+AGG + chr5.2:3876600-3876619 None:intergenic 35.0%
CATATCAGCCTAATCATACT+TGG - chr5.2:3879868-3879887 MS.gene22597:CDS 35.0%
CATGATGTGAGTTATGAGAA+TGG - chr5.2:3876742-3876761 MS.gene22597:intron 35.0%
CTAAGTGGAAAATATGTAGC+AGG + chr5.2:3876640-3876659 None:intergenic 35.0%
GATTTGCATTCCAAAGTTGA+TGG - chr5.2:3878274-3878293 MS.gene22597:intron 35.0%
GCACCTGTGAATAAAAGAAA+AGG + chr5.2:3879103-3879122 None:intergenic 35.0%
GCTACAGAAACAGTTACATA+CGG + chr5.2:3876286-3876305 None:intergenic 35.0%
GCTTCCTTTACCACTTAAAA+TGG - chr5.2:3879272-3879291 MS.gene22597:intron 35.0%
GGATAACTAACCACAAAGTT+AGG + chr5.2:3877725-3877744 None:intergenic 35.0%
GTCAAATATCTCCATTATCG+TGG + chr5.2:3878932-3878951 None:intergenic 35.0%
GTCTTACCTAAAAAACTTGG+TGG - chr5.2:3876220-3876239 MS.gene22597:CDS 35.0%
TAGAGACACAGAAATTGCAA+TGG - chr5.2:3879842-3879861 MS.gene22597:CDS 35.0%
TATCTTCGATGCAATAAGTC+AGG - chr5.2:3876780-3876799 MS.gene22597:CDS 35.0%
TCAAATGTTGTAAGAGCTAC+TGG - chr5.2:3879587-3879606 MS.gene22597:CDS 35.0%
TCAACCATTAAACTCTGTGA+CGG + chr5.2:3878097-3878116 None:intergenic 35.0%
TCAGTATACACCTGTTGATA+AGG - chr5.2:3876570-3876589 MS.gene22597:CDS 35.0%
TCTTCTCAAAGCTAAATCAC+AGG - chr5.2:3876897-3876916 MS.gene22597:CDS 35.0%
TGAAAATGAGTATGAACCAC+AGG - chr5.2:3879508-3879527 MS.gene22597:CDS 35.0%
TGCAAACAACTTAATTCCGA+TGG - chr5.2:3879120-3879139 MS.gene22597:intron 35.0%
TGGAAATCCTTTCACAGAAT+TGG + chr5.2:3878599-3878618 None:intergenic 35.0%
TGTCATGGTACAAAAGTTGA+AGG - chr5.2:3876481-3876500 MS.gene22597:CDS 35.0%
TTTACTGAAATACCCACTTG+AGG - chr5.2:3880082-3880101 MS.gene22597:CDS 35.0%
TTTCAAGCACTCTTCAGTTA+GGG - chr5.2:3877198-3877217 MS.gene22597:CDS 35.0%
! AAACTTGGTGGCAAAATTGA+AGG - chr5.2:3876232-3876251 MS.gene22597:CDS 35.0%
! AATTTACAAGGCATTAGAGG+AGG - chr5.2:3879478-3879497 MS.gene22597:CDS 35.0%
! ACACTATTAGTCTATTCCCT+TGG - chr5.2:3877044-3877063 MS.gene22597:intron 35.0%
! ACACTTTTCACAAGAAAGTG+GGG - chr5.2:3876185-3876204 MS.gene22597:CDS 35.0%
! ACCCTTTGTATTGCATCTTT+TGG + chr5.2:3878628-3878647 None:intergenic 35.0%
! ACTTTTCCACCTTTTCTAAG+TGG + chr5.2:3876655-3876674 None:intergenic 35.0%
! ATTGAACAGAACTTGGTTTG+TGG - chr5.2:3878727-3878746 MS.gene22597:CDS 35.0%
! CTTTATAGTAATGGTGTTGG+TGG - chr5.2:3876598-3876617 MS.gene22597:CDS 35.0%
! GACACTTTTCACAAGAAAGT+GGG - chr5.2:3876184-3876203 MS.gene22597:CDS 35.0%
!! GACACCATTTTAAGTGGTAA+AGG + chr5.2:3879279-3879298 None:intergenic 35.0%
!! GATTGGTCTATATTGTTGGT+TGG - chr5.2:3876809-3876828 MS.gene22597:CDS 35.0%
!! GCTTGCAATTCTGTTATTTC+TGG - chr5.2:3877334-3877353 MS.gene22597:intron 35.0%
!! TATGTAACTGTTTCTGTAGC+TGG - chr5.2:3876286-3876305 MS.gene22597:CDS 35.0%
!! TTTTCAAGCACTCTTCAGTT+AGG - chr5.2:3877197-3877216 MS.gene22597:CDS 35.0%
AAACATTCCCTGATGTTGGT+GGG - chr5.2:3880144-3880163 MS.gene22597:CDS 40.0%
AAACTAGGAAGACAACCTTG+TGG + chr5.2:3876703-3876722 None:intergenic 40.0%
AAATCATGCCATGGTTGTCT+TGG + chr5.2:3878259-3878278 None:intergenic 40.0%
AACAGTTACATACGGATCAC+TGG + chr5.2:3876278-3876297 None:intergenic 40.0%
AACCAAGCATTCTAAACCTC+AGG - chr5.2:3879893-3879912 MS.gene22597:CDS 40.0%
AAGGTTGTCTTCCTAGTTTG+AGG - chr5.2:3876704-3876723 MS.gene22597:intron 40.0%
ACATTCTATAACCATGCACC+TGG + chr5.2:3879920-3879939 None:intergenic 40.0%
ACCAAGCATTCTAAACCTCA+GGG - chr5.2:3879894-3879913 MS.gene22597:CDS 40.0%
ACTAAACAGGGTTCTGTTAC+TGG - chr5.2:3878229-3878248 MS.gene22597:intron 40.0%
AGGTTGTCTTCCTAGTTTGA+GGG - chr5.2:3876705-3876724 MS.gene22597:intron 40.0%
ATGAGCATAACAAGGAGACT+TGG - chr5.2:3878455-3878474 MS.gene22597:intron 40.0%
CAACCATTAAACTCTGTGAC+GGG + chr5.2:3878096-3878115 None:intergenic 40.0%
CCTATTCAAAAGTAGCAGGA+AGG + chr5.2:3877074-3877093 None:intergenic 40.0%
CCTTTGAATCAACCTCAAGT+GGG + chr5.2:3880097-3880116 None:intergenic 40.0%
CGGTAATAGAAGTAAGCAAC+TGG + chr5.2:3877111-3877130 None:intergenic 40.0%
CTCAAAGCTAAATCACAGGA+AGG - chr5.2:3876901-3876920 MS.gene22597:CDS 40.0%
CTCATTAGGGATACTAGAGA+TGG - chr5.2:3876853-3876872 MS.gene22597:CDS 40.0%
GAAACAATGAGAACCCTGTT+TGG - chr5.2:3876338-3876357 MS.gene22597:CDS 40.0%
GCCCTTTATAGTAATGGTGT+TGG - chr5.2:3876595-3876614 MS.gene22597:CDS 40.0%
GGAGGTCTTGATTTATGTCT+CGG - chr5.2:3877629-3877648 MS.gene22597:CDS 40.0%
GGTCATTGAGTGAGTATAAC+TGG - chr5.2:3880018-3880037 MS.gene22597:CDS 40.0%
GTCCTAAAGAGAGAATGTGT+CGG + chr5.2:3877668-3877687 None:intergenic 40.0%
TAAAGGGCTACCTTATCAAC+AGG + chr5.2:3876583-3876602 None:intergenic 40.0%
TAACCAACGCTCCTCAAAAT+TGG + chr5.2:3878323-3878342 None:intergenic 40.0%
TACTGGACAAAACAATCCTC+AGG - chr5.2:3879604-3879623 MS.gene22597:CDS 40.0%
TAGTGCCTTCCATTGATCTT+TGG + chr5.2:3879824-3879843 None:intergenic 40.0%
TCACAGATTATTGGTGCAGT+TGG - chr5.2:3876439-3876458 MS.gene22597:CDS 40.0%
TCATCAGAAGACAGTCATTG+TGG - chr5.2:3877562-3877581 MS.gene22597:CDS 40.0%
TCCTATGTGTTCACTCCATA+GGG + chr5.2:3879943-3879962 None:intergenic 40.0%
TGACCTATCAGATCTTTGGT+AGG + chr5.2:3877897-3877916 None:intergenic 40.0%
TGGGATTCTTTCAAAGACCT+CGG - chr5.2:3878862-3878881 MS.gene22597:intron 40.0%
TGTGAAACATTCCCTGATGT+TGG - chr5.2:3880140-3880159 MS.gene22597:CDS 40.0%
TTAGAACTCAATACTCACCG+AGG + chr5.2:3878882-3878901 None:intergenic 40.0%
TTATGTTCCCACCAACATCA+GGG + chr5.2:3880154-3880173 None:intergenic 40.0%
TTGCCTTGATGAGCATAACA+AGG - chr5.2:3878447-3878466 MS.gene22597:intron 40.0%
TTGCTTAATTGTCAGGAAGC+TGG - chr5.2:3877524-3877543 MS.gene22597:CDS 40.0%
TTGGAATGCAAATCATGCCA+TGG + chr5.2:3878268-3878287 None:intergenic 40.0%
TTGGTTGCCCAAGTATGATT+AGG + chr5.2:3879879-3879898 None:intergenic 40.0%
TTGTTATGCTCATCAAGGCA+AGG + chr5.2:3878448-3878467 None:intergenic 40.0%
TTTATGTTCCCACCAACATC+AGG + chr5.2:3880155-3880174 None:intergenic 40.0%
! CACTTTTCACAAGAAAGTGG+GGG - chr5.2:3876186-3876205 MS.gene22597:CDS 40.0%
! CCACTTGAGGTTGATTCAAA+GGG - chr5.2:3880095-3880114 MS.gene22597:CDS 40.0%
! CTACTCAGAGGATTCTCTTT+TGG - chr5.2:3879242-3879261 MS.gene22597:intron 40.0%
! GATGTTGGTGGGAACATAAA+GGG - chr5.2:3880155-3880174 MS.gene22597:CDS 40.0%
! GGACACTTTTCACAAGAAAG+TGG - chr5.2:3876183-3876202 MS.gene22597:CDS 40.0%
! TCTCCTTGTTATGCTCATCA+AGG + chr5.2:3878453-3878472 None:intergenic 40.0%
! TCTTGGCTCGTCATATAACT+GGG - chr5.2:3878843-3878862 MS.gene22597:intron 40.0%
! TGACATCCTCACCAATTTTG+AGG - chr5.2:3878309-3878328 MS.gene22597:intron 40.0%
! TGATGTTGGTGGGAACATAA+AGG - chr5.2:3880154-3880173 MS.gene22597:CDS 40.0%
! TTCTTGGCTCGTCATATAAC+TGG - chr5.2:3878842-3878861 MS.gene22597:intron 40.0%
!! ACATAGCTTGCTCAAACAAC+AGG - chr5.2:3877252-3877271 MS.gene22597:CDS 40.0%
!! AGACACGTATGTTTCGAGTT+AGG - chr5.2:3878021-3878040 MS.gene22597:CDS 40.0%
!! ATCCAAGTGGACTAATTAGC+AGG + chr5.2:3877920-3877939 None:intergenic 40.0%
!! CGTCGATTGGTCTATATTGT+TGG - chr5.2:3876805-3876824 MS.gene22597:CDS 40.0%
!! TGAAGTGCTGATTCCAAACA+GGG + chr5.2:3876354-3876373 None:intergenic 40.0%
!! TTGAAGTGCTGATTCCAAAC+AGG + chr5.2:3876355-3876374 None:intergenic 40.0%
!!! CCTTCCTGCTACTTTTGAAT+AGG - chr5.2:3877071-3877090 MS.gene22597:intron 40.0%
AACGCTCCTCAAAATTGGTG+AGG + chr5.2:3878318-3878337 None:intergenic 45.0%
AATGTTTCACAGCCAACGAG+AGG + chr5.2:3880131-3880150 None:intergenic 45.0%
CAAGATGCTCATGTTCCACA+AGG - chr5.2:3876685-3876704 MS.gene22597:intron 45.0%
CACCTGCTAATTAGTCCACT+TGG - chr5.2:3877915-3877934 MS.gene22597:CDS 45.0%
CAGGTGACCTATCAGATCTT+TGG + chr5.2:3877901-3877920 None:intergenic 45.0%
CCAAGCATGCTGTTAGAAGT+AGG + chr5.2:3876958-3876977 None:intergenic 45.0%
CCCTTTGAATCAACCTCAAG+TGG + chr5.2:3880098-3880117 None:intergenic 45.0%
CCTACTTCTAACAGCATGCT+TGG - chr5.2:3876955-3876974 MS.gene22597:intron 45.0%
CTATGGAGTGAACACATAGG+AGG - chr5.2:3879942-3879961 MS.gene22597:CDS 45.0%
CTCACACATTCAATGCTCTC+TGG + chr5.2:3879990-3880009 None:intergenic 45.0%
CTCCATCTGTTCCACGATAA+TGG - chr5.2:3878918-3878937 MS.gene22597:intron 45.0%
CTCCATTATCGTGGAACAGA+TGG + chr5.2:3878923-3878942 None:intergenic 45.0%
CTCCGACACATTCTCTCTTT+AGG - chr5.2:3877663-3877682 MS.gene22597:intron 45.0%
CTCCTATGTGTTCACTCCAT+AGG + chr5.2:3879944-3879963 None:intergenic 45.0%
CTCTGACATTATCGGCATTC+AGG - chr5.2:3878417-3878436 MS.gene22597:intron 45.0%
CTCTGAGTAGCTGTACTTGA+GGG + chr5.2:3879232-3879251 None:intergenic 45.0%
CTTCCTAGTTTGAGGGTTGA+TGG - chr5.2:3876712-3876731 MS.gene22597:intron 45.0%
GAAACATTCCCTGATGTTGG+TGG - chr5.2:3880143-3880162 MS.gene22597:CDS 45.0%
GAGCCTACCAAAGATCTGAT+AGG - chr5.2:3877891-3877910 MS.gene22597:intron 45.0%
GCAGTCCTCACCATATAATC+TGG - chr5.2:3877833-3877852 MS.gene22597:intron 45.0%
TCCCTATGGAGTGAACACAT+AGG - chr5.2:3879939-3879958 MS.gene22597:CDS 45.0%
TCTGATGCAAGATGTGCAAC+AGG + chr5.2:3876382-3876401 None:intergenic 45.0%
! CCCACTTGAGGTTGATTCAA+AGG - chr5.2:3880094-3880113 MS.gene22597:CDS 45.0%
! GTCCTTTTCCTCCAGATCTT+GGG + chr5.2:3877234-3877253 None:intergenic 45.0%
! TCAGAGGATTCTCTTTTGGC+AGG - chr5.2:3879246-3879265 MS.gene22597:intron 45.0%
! TGTCCTTTTCCTCCAGATCT+TGG + chr5.2:3877235-3877254 None:intergenic 45.0%
!! GAGAGTGCTTCTACTTGTGT+GGG - chr5.2:3876927-3876946 MS.gene22597:CDS 45.0%
!! TCACCAATTTTGAGGAGCGT+TGG - chr5.2:3878317-3878336 MS.gene22597:intron 45.0%
!! TGAGAGTGCTTCTACTTGTG+TGG - chr5.2:3876926-3876945 MS.gene22597:CDS 45.0%
!!! GGTGTTGGTGGTGATTTTCA+AGG - chr5.2:3876610-3876629 MS.gene22597:CDS 45.0%
!! ATATATTATAACATATTTAA+AGG + chr5.2:3879048-3879067 None:intergenic 5.0%
!! TATATTATAACATATTTAAA+GGG + chr5.2:3879047-3879066 None:intergenic 5.0%
!! TTAAATATGTTATAATATAT+AGG - chr5.2:3879048-3879067 MS.gene22597:intron 5.0%
AGGCCCGTCACAGAGTTTAA+TGG - chr5.2:3878090-3878109 MS.gene22597:CDS 50.0%
CAAGGAGACTTGGCATGTTC+AGG - chr5.2:3878465-3878484 MS.gene22597:intron 50.0%
CCACCATCAACCCTCAAACT+AGG + chr5.2:3876718-3876737 None:intergenic 50.0%
CCTCAAGTACAGCTACTCAG+AGG - chr5.2:3879230-3879249 MS.gene22597:intron 50.0%
CCTCTGAGTAGCTGTACTTG+AGG + chr5.2:3879233-3879252 None:intergenic 50.0%
CTGGTTGTCCAAGACAACCA+TGG - chr5.2:3878248-3878267 MS.gene22597:intron 50.0%
CTTCTTTGCCCAAGATCTGG+AGG - chr5.2:3877223-3877242 MS.gene22597:CDS 50.0%
GAGTGAACACATAGGAGGTG+TGG - chr5.2:3879947-3879966 MS.gene22597:CDS 50.0%
GGCATTGTAAAGCCTCTCGT+TGG - chr5.2:3880116-3880135 MS.gene22597:CDS 50.0%
GTCATTGTGGATGCTGATGC+TGG - chr5.2:3877575-3877594 MS.gene22597:CDS 50.0%
GTGATTCCTATGTGGCCTGA+AGG - chr5.2:3879202-3879221 MS.gene22597:CDS 50.0%
GTGCTTCTTTGCCCAAGATC+TGG - chr5.2:3877220-3877239 MS.gene22597:CDS 50.0%
TGCCCAAGATCTGGAGGAAA+AGG - chr5.2:3877229-3877248 MS.gene22597:CDS 50.0%
! AATAAGTCAGGCGCGTCGAT+TGG - chr5.2:3876792-3876811 MS.gene22597:CDS 50.0%
! CATCTGGAGCATGATCCAAG+TGG + chr5.2:3877933-3877952 None:intergenic 50.0%
! GCCCTGAGGTTTAGAATGCT+TGG + chr5.2:3879898-3879917 None:intergenic 50.0%
! GTACTTGAGGGTACACCTTC+AGG + chr5.2:3879220-3879239 None:intergenic 50.0%
! TACAAGGCATTAGAGGAGGC+TGG - chr5.2:3879482-3879501 MS.gene22597:CDS 50.0%
! TCACGTCAGTACTGGACATC+TGG + chr5.2:3877949-3877968 None:intergenic 50.0%
!! AGATGTCCAGTACTGACGTG+AGG - chr5.2:3877948-3877967 MS.gene22597:CDS 50.0%
!! ATGTCCAGTACTGACGTGAG+GGG - chr5.2:3877950-3877969 MS.gene22597:CDS 50.0%
!! CCTAGTTTGAGGGTTGATGG+TGG - chr5.2:3876715-3876734 MS.gene22597:intron 50.0%
!! GATGTCCAGTACTGACGTGA+GGG - chr5.2:3877949-3877968 MS.gene22597:CDS 50.0%
GCATTCTAAACCTCAGGGCC+AGG - chr5.2:3879899-3879918 MS.gene22597:CDS 55.0%
GGCAGCAGGACCATCAACTT+TGG + chr5.2:3878287-3878306 None:intergenic 55.0%
GGTACACCTTCAGGCCACAT+AGG + chr5.2:3879211-3879230 None:intergenic 55.0%
GTGAGGATGTCATAGGCAGC+AGG + chr5.2:3878301-3878320 None:intergenic 55.0%
! AGTAGCAGGAAGGCATGCCA+AGG + chr5.2:3877064-3877083 None:intergenic 55.0%
! GTAGCAGGAAGGCATGCCAA+GGG + chr5.2:3877063-3877082 None:intergenic 55.0%
AAACCTCAGGGCCAGGTGCA+TGG - chr5.2:3879906-3879925 MS.gene22597:CDS 60.0%
CACACCCCTCACGTCAGTAC+TGG + chr5.2:3877957-3877976 None:intergenic 60.0%
CCTTGGCAATCGCGAGCTCT+CGG - chr5.2:3879550-3879569 MS.gene22597:CDS 60.0%
TAACCATGCACCTGGCCCTG+AGG + chr5.2:3879912-3879931 None:intergenic 60.0%
CCGAGAGCTCGCGATTGCCA+AGG + chr5.2:3879553-3879572 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 3876181 3880214 3876181 ID=MS.gene22597
chr5.2 mRNA 3876181 3880214 3876181 ID=MS.gene22597.t1;Parent=MS.gene22597
chr5.2 exon 3879408 3880214 3879408 ID=MS.gene22597.t1.exon1;Parent=MS.gene22597.t1
chr5.2 CDS 3879408 3880214 3879408 ID=cds.MS.gene22597.t1;Parent=MS.gene22597.t1
chr5.2 exon 3879122 3879238 3879122 ID=MS.gene22597.t1.exon2;Parent=MS.gene22597.t1
chr5.2 CDS 3879122 3879238 3879122 ID=cds.MS.gene22597.t1;Parent=MS.gene22597.t1
chr5.2 exon 3878662 3878856 3878662 ID=MS.gene22597.t1.exon3;Parent=MS.gene22597.t1
chr5.2 CDS 3878662 3878856 3878662 ID=cds.MS.gene22597.t1;Parent=MS.gene22597.t1
chr5.2 exon 3877909 3878157 3877909 ID=MS.gene22597.t1.exon4;Parent=MS.gene22597.t1
chr5.2 CDS 3877909 3878157 3877909 ID=cds.MS.gene22597.t1;Parent=MS.gene22597.t1
chr5.2 exon 3877750 3877818 3877750 ID=MS.gene22597.t1.exon5;Parent=MS.gene22597.t1
chr5.2 CDS 3877750 3877818 3877750 ID=cds.MS.gene22597.t1;Parent=MS.gene22597.t1
chr5.2 exon 3877512 3877659 3877512 ID=MS.gene22597.t1.exon6;Parent=MS.gene22597.t1
chr5.2 CDS 3877512 3877659 3877512 ID=cds.MS.gene22597.t1;Parent=MS.gene22597.t1
chr5.2 exon 3877128 3877276 3877128 ID=MS.gene22597.t1.exon7;Parent=MS.gene22597.t1
chr5.2 CDS 3877128 3877276 3877128 ID=cds.MS.gene22597.t1;Parent=MS.gene22597.t1
chr5.2 exon 3876770 3876946 3876770 ID=MS.gene22597.t1.exon8;Parent=MS.gene22597.t1
chr5.2 CDS 3876770 3876946 3876770 ID=cds.MS.gene22597.t1;Parent=MS.gene22597.t1
chr5.2 exon 3876181 3876672 3876181 ID=MS.gene22597.t1.exon9;Parent=MS.gene22597.t1
chr5.2 CDS 3876181 3876672 3876181 ID=cds.MS.gene22597.t1;Parent=MS.gene22597.t1
Gene Sequence

>MS.gene22597

ATGGACACTTTTCACAAGAAAGTGGGGGAGATGTTTTCAGTCTTACCTAAAAAACTTGGTGGCAAAATTGAAGGCAAAATGTCTCGTAATATAACCAGTGATCCGTATGTAACTGTTTCTGTAGCTGGTGCTGTTATTGCAAGAACCTTTGTAATTAGAAACAATGAGAACCCTGTTTGGAATCAGCACTTCAATGTACCTGTTGCACATCTTGCATCAGAAATTCACTTTGTTGTAAAAGACAATGATATTGTTGGTTCACAGATTATTGGTGCAGTTGGAATTCCAGTTGAAAAATTATGTCATGGTACAAAAGTTGAAGGCTTTTTTCCCATTCTCAATACTAATGGAAAACCCTTTAAGACAGAAACAATTTTGAACTTGTCAATTCAGTATACACCTGTTGATAAGGTAGCCCTTTATAGTAATGGTGTTGGTGGTGATTTTCAAGGTGTTCCTGCTACATATTTTCCACTTAGAAAAGGTGGAAAAGTTACACTTTATCAAGATGCTCATGTTCCACAAGGTTGTCTTCCTAGTTTGAGGGTTGATGGTGGTGATCATGATGTGAGTTATGAGAATGGAAATTGTTGGTATGATATCTTCGATGCAATAAGTCAGGCGCGTCGATTGGTCTATATTGTTGGTTGGTCTGTGTACTACAATGTTAGTCTCATTAGGGATACTAGAGATGGAAAAGATTGTACTTTAGGTGATCTTCTCAAAGCTAAATCACAGGAAGGTGTGAGAGTGCTTCTACTTGTGTGGGATGATCCTACTTCTAACAGCATGCTTGGATATAAAACAGTAATGATCTTCAAAAAAAAAACTTTCTATTTATGTTTCTGATATTTGGCTCTCTAACACTATTAGTCTATTCCCTTGGCATGCCTTCCTGCTACTTTTGAATAGGCAATTAATTTGAAACCAGTTGCTTACTTCTATTACCGAATTACCATGATTTATTGATATGTAGGTTGGACTTATGAACACTTATGACGAGGAAACTCGCAGTTTTTTCAAGCACTCTTCAGTTAGGGTGCTTCTTTGCCCAAGATCTGGAGGAAAAGGACATAGCTTGCTCAAACAACAGGTCAGTTAGAGAAAAACTATTTTTGTATGTCTAACTGCATAGTACTGAATTACACAAAATGCTTGCAATTCTGTTATTTCTGGTTTTACTTATCTGCTTTATATTTCTTGTATACATCTTTTGTCTAAAAAAATATGTATTATATGTATCATATTTTAGAAATTGAAAACATGAGTACTCTATACAGTTTAATCAGATAATAGAAATAGTTAAAGGTGCAATCTTTTTAAAAAAGGACATATTTTGCTTTTTGCTTAATTGTCAGGAAGCTGGAACAATCTATACGCATCATCAGAAGACAGTCATTGTGGATGCTGATGCTGGTCAGCATAAAAGAAAGATTTTAGCTTTCATTGGAGGTCTTGATTTATGTCTCGGAAGATATGATACTCCGACACATTCTCTCTTTAGGACTTTGCAGACCACACACAAAGATGACTTTCATAATCCTAACTTTGTGGTTAGTTATCCATTTTTTATTTTCACTAGTTTTCATTGCCAATGTTATAAGTATGGCATTAAATAAGATATGGTTTTAAAATGTGTTTATACATGATGGGCAGTCCTCACCATATAATCTGGTTTTATAAGCTTTAGCTAGGCTCAAGTTGATATCAGAGCCTACCAAAGATCTGATAGGTCACCTGCTAATTAGTCCACTTGGATCATGCTCCAGATGTCCAGTACTGACGTGAGGGGTGTGAGTTAAGAGTCTGTAGAATTGAATTAGGCATAACCGAAATTCTAAGACACGTATGTTTCGAGTTAGGCACCTTCGCATTTTTAATCTCCATAGACTGCTTTTTCTTTTTCAAAAGGCCCGTCACAGAGTTTAATGGTTGAGAATACATAATCAATTTCAAAATTTCTAACCATTTTATATGTTGTCCTTTGCGTTGTAATTGTTTTATTTGTCATAATAGAGGTTATGAATGAACTGAGTTTTAATTTGCATACTAAACAGGGTTCTGTTACTGGTTGTCCAAGACAACCATGGCATGATTTGCATTCCAAAGTTGATGGTCCTGCTGCCTATGACATCCTCACCAATTTTGAGGAGCGTTGGTTAAGAGCACTAAAAATGAATACACTTCAAAAGATGAAAACTTCACATGATGATTCATTACTGAAAATTGATAGAATCTCTGACATTATCGGCATTCAGGAAGTACCTTGCCTTGATGAGCATAACAAGGAGACTTGGCATGTTCAGGTATCATAGACTGATTTAATTCTCATTCCCTTAAAGAAACTTCTTCAATTTTGATGTATCTAATTGTTTATTATATCCTTTAAATTGAAGATCTTCCGTTCTATTGATTCCAATTCTGTGAAAGGATTTCCAAAAGAACCAAAAGATGCAATACAAAGGGTAAAGTGACTTCATTCCATTCTAAAATTTAGATTTTTTGTTATGTTAGGTGTGAAACAAAGAGCTGACTATGCTTACTTCATTGAACAGAACTTGGTTTGTGGAAAAAATGTAATGATAGACATGAGCATACATTCTGCATATGTCAAATCAATCAGAGCAGCACAGAAGTTCATTTATATTGAGAATCAATATTTTCTTGGCTCGTCATATAACTGGGATTCTTTCAAAGACCTCGGTGAGTATTGAGTTCTAAAACCAATAAAATGATACTCCATCTGTTCCACGATAATGGAGATATTTGACTGTTTCTTACAGATTAAGAAAAGTGTGTAAATATAAGAGTGAAAATAATAATACTTTTATTAAATTACTCTTATCAAGTATTTATGTATTTACCCTTTAAATATGTTATAATATATAGGTTGCAATAGGCATCCTTGTTATATTCATTCCTTTTCTTTTATTCACAGGTGCAAACAACTTAATTCCGATGGAAATTGCGCTAAAAATAGCCAACAAAATCAAACAGAAAGAAAGATTCTCTGTGTATATTGTGATTCCTATGTGGCCTGAAGGTGTACCCTCAAGTACAGCTACTCAGAGGATTCTCTTTTGGCAGGTAAGCTTCCTTTACCACTTAAAATGGTGTCATGTTATAAATCATAAAAATTTCTATTTAGATGGCATAATGATTAAGAAGATTTTCTTCTCAAACATGTATATTAAGCTAGAAGAAACTCTCAAATTTGTGTGCTTTGTATTATCAAATTATCCTAAACTCTTAAATGTTGATTTGGTAGTTCAAAACAATGCAAATGATGTATGGAACAATTTACAAGGCATTAGAGGAGGCTGGACTTGAAAATGAGTATGAACCACAGGACTACTTGAATTTCTTTTGCCTTGGCAATCGCGAGCTCTCGGATAATGAAAATATTTCAAATGTTGTAAGAGCTACTGGACAAAACAATCCTCAGGTATTTTGTTTTTACTCTCTTTAAGTAAACTTGAAATTTTTTGCCTTTTGATCAAGTTAGTTTTATCATTGTTGTTTGCATATTTTGGAACCTATAGGTACTTACTCAAAAGAACAGAAGATTCATGATATATGTTCATTCAAAAGGAATGATAGTGGATGATGAATATGTGTTAATGGGATCTGCCAACATAAACCAAAGATCAATGGAAGGCACTAGAGACACAGAAATTGCAATGGGAGCATATCAGCCTAATCATACTTGGGCAACCAAGCATTCTAAACCTCAGGGCCAGGTGCATGGTTATAGAATGTCCCTATGGAGTGAACACATAGGAGGTGTGGAAGAATGTTTCAAGCAACCAGAGAGCATTGAATGTGTGAGAAGAATAAGGTCATTGAGTGAGTATAACTGGAGACAATATTTGGCTGATGAAGTAACTGAAATGAATGCTCATTTACTGAAATACCCACTTGAGGTTGATTCAAAGGGCATTGTAAAGCCTCTCGTTGGCTGTGAAACATTCCCTGATGTTGGTGGGAACATAAAGGGCACCTTTACTGTACTTCAAGAAAATCTCACCATATAA
Protein sequence

>MS.gene22597.t1

MDTFHKKVGEMFSVLPKKLGGKIEGKMSRNITSDPYVTVSVAGAVIARTFVIRNNENPVWNQHFNVPVAHLASEIHFVVKDNDIVGSQIIGAVGIPVEKLCHGTKVEGFFPILNTNGKPFKTETILNLSIQYTPVDKVALYSNGVGGDFQGVPATYFPLRKGGKVTLYQDAHVPQGCLPSLRVDGGDHDVSYENGNCWYDIFDAISQARRLVYIVGWSVYYNVSLIRDTRDGKDCTLGDLLKAKSQEGVRVLLLVWDDPTSNSMLGYKTVGLMNTYDEETRSFFKHSSVRVLLCPRSGGKGHSLLKQQEAGTIYTHHQKTVIVDADAGQHKRKILAFIGGLDLCLGRYDTPTHSLFRTLQTTHKDDFHNPNFVGSVTGCPRQPWHDLHSKVDGPAAYDILTNFEERWLRALKMNTLQKMKTSHDDSLLKIDRISDIIGIQEVPCLDEHNKETWHVQIFRSIDSNSVKGFPKEPKDAIQRNLVCGKNVMIDMSIHSAYVKSIRAAQKFIYIENQYFLGSSYNWDSFKDLGANNLIPMEIALKIANKIKQKERFSVYIVIPMWPEGVPSSTATQRILFWQFKTMQMMYGTIYKALEEAGLENEYEPQDYLNFFCLGNRELSDNENISNVVRATGQNNPQVLTQKNRRFMIYVHSKGMIVDDEYVLMGSANINQRSMEGTRDTEIAMGAYQPNHTWATKHSKPQGQVHGYRMSLWSEHIGGVEECFKQPESIECVRRIRSLSEYNWRQYLADEVTEMNAHLLKYPLEVDSKGIVKPLVGCETFPDVGGNIKGTFTVLQENLTI