Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23050.t1 | RHN48851.1 | 93 | 227 | 16 | 0 | 1 | 227 | 99 | 325 | 4.40E-109 | 404.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23050.t1 | A0A072UEV4 | 93.0 | 227 | 16 | 0 | 1 | 227 | 66 | 292 | 3.2e-109 | 404.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049298 | MS.gene23050 | 0.800493 | 1.40E-48 | -1.69E-46 |
| MS.gene050875 | MS.gene23050 | 0.820329 | 7.27E-53 | -1.69E-46 |
| MS.gene051914 | MS.gene23050 | 0.95614 | 5.94E-114 | -1.69E-46 |
| MS.gene052308 | MS.gene23050 | 0.855483 | 6.12E-62 | -1.69E-46 |
| MS.gene053173 | MS.gene23050 | 0.840536 | 8.20E-58 | -1.69E-46 |
| MS.gene053348 | MS.gene23050 | 0.811239 | 7.73E-51 | -1.69E-46 |
| MS.gene054551 | MS.gene23050 | 0.86464 | 1.05E-64 | -1.69E-46 |
| MS.gene054552 | MS.gene23050 | 0.801685 | 8.01E-49 | -1.69E-46 |
| MS.gene054593 | MS.gene23050 | 0.871207 | 8.15E-67 | -1.69E-46 |
| MS.gene054633 | MS.gene23050 | 0.833714 | 4.55E-56 | -1.69E-46 |
| MS.gene054662 | MS.gene23050 | 0.847443 | 1.15E-59 | -1.69E-46 |
| MS.gene054941 | MS.gene23050 | 0.817383 | 3.39E-52 | -1.69E-46 |
| MS.gene055308 | MS.gene23050 | 0.858744 | 6.67E-63 | -1.69E-46 |
| MS.gene055578 | MS.gene23050 | 0.845968 | 2.92E-59 | -1.69E-46 |
| MS.gene056041 | MS.gene23050 | 0.828458 | 8.89E-55 | -1.69E-46 |
| MS.gene05640 | MS.gene23050 | 0.861663 | 8.76E-64 | -1.69E-46 |
| MS.gene056528 | MS.gene23050 | 0.828914 | 6.90E-55 | -1.69E-46 |
| MS.gene05652 | MS.gene23050 | 0.846221 | 2.49E-59 | -1.69E-46 |
| MS.gene057101 | MS.gene23050 | 0.823335 | 1.46E-53 | -1.69E-46 |
| MS.gene057367 | MS.gene23050 | 0.813661 | 2.29E-51 | -1.69E-46 |
| MS.gene057458 | MS.gene23050 | 0.831266 | 1.84E-55 | -1.69E-46 |
| MS.gene058013 | MS.gene23050 | 0.805267 | 1.45E-49 | -1.69E-46 |
| MS.gene058128 | MS.gene23050 | 0.872765 | 2.47E-67 | -1.69E-46 |
| MS.gene058853 | MS.gene23050 | 0.860601 | 1.84E-63 | -1.69E-46 |
| MS.gene059553 | MS.gene23050 | 0.80133 | 9.47E-49 | -1.69E-46 |
| MS.gene059616 | MS.gene23050 | 0.854692 | 1.04E-61 | -1.69E-46 |
| MS.gene06093 | MS.gene23050 | 0.853878 | 1.79E-61 | -1.69E-46 |
| MS.gene061099 | MS.gene23050 | 0.81243 | 4.26E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23050.t1 | MTR_7g107150 | 95.154 | 227 | 11 | 0 | 1 | 227 | 66 | 292 | 1.33e-145 | 408 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23050.t1 | AT5G06590 | 44.664 | 253 | 102 | 7 | 4 | 226 | 69 | 313 | 6.20e-56 | 181 |
| MS.gene23050.t1 | AT5G06590 | 42.857 | 224 | 90 | 7 | 4 | 197 | 69 | 284 | 4.50e-41 | 142 |
Find 48 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCTTCCTCCTCAATTTC+AGG | 0.165758 | 7.2:+7134926 | None:intergenic |
| AGAGGGAGACAAGGGGAATT+TGG | 0.217034 | 7.2:-7133905 | MS.gene23050:CDS |
| GATAGTCCCTCTTCTTTCTA+TGG | 0.224713 | 7.2:-7134860 | MS.gene23050:CDS |
| GATATTTCTTCATTTGATTT+AGG | 0.238863 | 7.2:-7133191 | MS.gene23050:intron |
| CCCTTGTCTCCCTCTAAATT+AGG | 0.260676 | 7.2:+7133913 | None:intergenic |
| GCAGGTTTCGGATGATAAAT+TGG | 0.276771 | 7.2:-7134882 | MS.gene23050:CDS |
| AGCAAATATGATCTTGCTTT+AGG | 0.302372 | 7.2:+7132873 | None:intergenic |
| TCACTCTCAATGGCCGATTC+TGG | 0.318237 | 7.2:-7134836 | MS.gene23050:CDS |
| AGCTGCTATGGCTACGTTCC+AGG | 0.330522 | 7.2:-7135048 | MS.gene23050:intron |
| TGTACAAGCGCCGCAGGTTT+CGG | 0.382807 | 7.2:-7134894 | MS.gene23050:CDS |
| CTTTGAGTTTGAAACAGCTT+GGG | 0.420767 | 7.2:-7134388 | MS.gene23050:CDS |
| GAACAGAGTACCTAATTTAG+AGG | 0.420798 | 7.2:-7133923 | MS.gene23050:intron |
| GCTCTTTAATATCTTTAAAG+TGG | 0.442865 | 7.2:+7133861 | None:intergenic |
| TTCCATCGGTCTTCTTGCTT+AGG | 0.444534 | 7.2:+7133234 | None:intergenic |
| ATGAAGAAATATCATCTTGA+CGG | 0.455986 | 7.2:+7133201 | None:intergenic |
| TGATTTAGTTCCTGAAATTG+AGG | 0.477536 | 7.2:-7134936 | MS.gene23050:intron |
| TCTTTGAGTTTGAAACAGCT+TGG | 0.478455 | 7.2:-7134389 | MS.gene23050:CDS |
| GAACTTCTTGAAGCCAGAAT+CGG | 0.483419 | 7.2:+7134823 | None:intergenic |
| TAATATCTTTAAAGTGGAGC+TGG | 0.492002 | 7.2:+7133867 | None:intergenic |
| CTCTTCAAAGGAAACCGTGC+TGG | 0.493028 | 7.2:+7135143 | None:intergenic |
| TGATGCTAGAGCCTTCATAT+AGG | 0.502322 | 7.2:+7133819 | None:intergenic |
| ATGGTCGTTGAGACAGTTGA+TGG | 0.503531 | 7.2:-7132828 | MS.gene23050:CDS |
| GCTAGAGCCTTCATATAGGC+AGG | 0.529395 | 7.2:+7133823 | None:intergenic |
| TCTAGTGCGCATGAACCGTA+TGG | 0.538349 | 7.2:-7132847 | MS.gene23050:CDS |
| TTATGATGTACAAGCGCCGC+AGG | 0.539382 | 7.2:-7134900 | MS.gene23050:CDS |
| TCTTGTACAATTCGTTGCAG+TGG | 0.542890 | 7.2:+7135112 | None:intergenic |
| CTAGCTACTTTAGCATCTGA+AGG | 0.547806 | 7.2:-7134350 | MS.gene23050:intron |
| ATGTCTTCCTGCCTATATGA+AGG | 0.553974 | 7.2:-7133830 | MS.gene23050:CDS |
| GATCGTCTTAAAAGCTGCTA+TGG | 0.555122 | 7.2:-7135060 | MS.gene23050:CDS |
| TTTCTATGGATCACTCTCAA+TGG | 0.556386 | 7.2:-7134846 | MS.gene23050:CDS |
| TATGAAGGCTCTAGCATCAT+GGG | 0.556428 | 7.2:-7133815 | MS.gene23050:CDS |
| ATATGAAGGCTCTAGCATCA+TGG | 0.557022 | 7.2:-7133816 | MS.gene23050:CDS |
| ACGGAAGAAGTTGCTTCCAT+CGG | 0.562648 | 7.2:+7133220 | None:intergenic |
| CAACTGTCTCAACGACCATA+CGG | 0.576988 | 7.2:+7132832 | None:intergenic |
| GTGGCCTAAAAGCTCTTCAA+AGG | 0.578631 | 7.2:+7135131 | None:intergenic |
| AGCCTAAGCAAGAAGACCGA+TGG | 0.582747 | 7.2:-7133236 | MS.gene23050:CDS |
| AGTGATCCATAGAAAGAAGA+GGG | 0.586786 | 7.2:+7134854 | None:intergenic |
| CCTAATTTAGAGGGAGACAA+GGG | 0.590428 | 7.2:-7133913 | MS.gene23050:CDS |
| ATCTTCGAGTTCGATTAGAT+CGG | 0.595046 | 7.2:+7135080 | None:intergenic |
| ACCTAATTTAGAGGGAGACA+AGG | 0.595373 | 7.2:-7133914 | MS.gene23050:CDS |
| AACAGAGTACCTAATTTAGA+GGG | 0.598785 | 7.2:-7133922 | MS.gene23050:intron |
| GAGTGATCCATAGAAAGAAG+AGG | 0.611635 | 7.2:+7134853 | None:intergenic |
| GGCCTTCTAGGATCTACTCG+TGG | 0.641817 | 7.2:-7133279 | MS.gene23050:intron |
| TTTAGTTCCTGAAATTGAGG+AGG | 0.651521 | 7.2:-7134933 | MS.gene23050:intron |
| GCTCGATTCAATGTCCAGCA+CGG | 0.657391 | 7.2:-7135157 | None:intergenic |
| AATTTATCATCCGAAACCTG+CGG | 0.707837 | 7.2:+7134884 | None:intergenic |
| CTAATTTAGAGGGAGACAAG+GGG | 0.710745 | 7.2:-7133912 | MS.gene23050:CDS |
| GAAGGCTCTAGCATCATGGG+AGG | 0.711259 | 7.2:-7133812 | MS.gene23050:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTTATATGGATTTTT+AGG | + | chr7.2:7134472-7134491 | None:intergenic | 10.0% |
| !!! | ATAACTTACAATTTTTTATA+TGG | + | chr7.2:7134481-7134500 | None:intergenic | 10.0% |
| !!! | ATTTTTTATATGGATTTTTA+GGG | + | chr7.2:7134471-7134490 | None:intergenic | 10.0% |
| !! | AATTGTAAGTTATATGTAAA+AGG | - | chr7.2:7134488-7134507 | MS.gene23050:intron | 15.0% |
| !! | TGAAAAAGTCTTTAAATTTA+AGG | + | chr7.2:7133171-7133190 | None:intergenic | 15.0% |
| !!! | TCATTTTTTCAAATTATAGT+TGG | + | chr7.2:7133390-7133409 | None:intergenic | 15.0% |
| !! | ACACTAAAAACTAAACTTAA+CGG | + | chr7.2:7132948-7132967 | None:intergenic | 20.0% |
| !! | ATTATGTGTTTATATACCAA+AGG | - | chr7.2:7134184-7134203 | MS.gene23050:intron | 20.0% |
| !! | ATTATTAAACTATGCTAAAG+AGG | + | chr7.2:7134881-7134900 | None:intergenic | 20.0% |
| !! | TAAAAAAAAAATTGCTTCTG+TGG | + | chr7.2:7134975-7134994 | None:intergenic | 20.0% |
| !! | TTATGTGTTTATATACCAAA+GGG | - | chr7.2:7134185-7134204 | MS.gene23050:intron | 20.0% |
| !! | TTATTAAACTATGCTAAAGA+GGG | + | chr7.2:7134880-7134899 | None:intergenic | 20.0% |
| !! | TTGCAAATAAAAATCACATA+CGG | - | chr7.2:7133291-7133310 | MS.gene23050:intron | 20.0% |
| !!! | ATCAATTCTAAAGAGAATAA+AGG | + | chr7.2:7133538-7133557 | None:intergenic | 20.0% |
| !!! | GATATTTCTTCATTTGATTT+AGG | - | chr7.2:7134759-7134778 | MS.gene23050:intron | 20.0% |
| !!! | TTAAAGACTTTTTCATACTT+TGG | - | chr7.2:7133176-7133195 | MS.gene23050:intron | 20.0% |
| !!! | TTTTGTTTACTAGTTTTTGT+GGG | - | chr7.2:7133775-7133794 | MS.gene23050:intron | 20.0% |
| ! | AACTGTTAAATTACATTGAC+TGG | - | chr7.2:7133476-7133495 | MS.gene23050:intron | 25.0% |
| ! | ATAATCATGTTGAAAGTTTC+TGG | - | chr7.2:7134540-7134559 | MS.gene23050:intron | 25.0% |
| ! | ATGAAGAAATATCATCTTGA+CGG | + | chr7.2:7134752-7134771 | None:intergenic | 25.0% |
| ! | CACACAGAGAAAAAAAAATT+AGG | + | chr7.2:7134647-7134666 | None:intergenic | 25.0% |
| ! | TGGATATAATATACTGTTGA+GGG | - | chr7.2:7133946-7133965 | MS.gene23050:intron | 25.0% |
| !! | GCTCTTTAATATCTTTAAAG+TGG | + | chr7.2:7134092-7134111 | None:intergenic | 25.0% |
| !! | TATGCATTTTTACAAATACC+TGG | + | chr7.2:7132923-7132942 | None:intergenic | 25.0% |
| !!! | ATAACATCAATTTTTTCCAC+AGG | - | chr7.2:7133630-7133649 | MS.gene23050:intron | 25.0% |
| !!! | ATCACATTGTTATTTTGCAA+TGG | + | chr7.2:7134831-7134850 | None:intergenic | 25.0% |
| !!! | ATGTGTGCATAGATTTTTTT+TGG | - | chr7.2:7133228-7133247 | MS.gene23050:CDS | 25.0% |
| !!! | ATTTTTATTTGCAACTATCC+AGG | + | chr7.2:7133285-7133304 | None:intergenic | 25.0% |
| !!! | CTTTTGTTTACTAGTTTTTG+TGG | - | chr7.2:7133774-7133793 | MS.gene23050:intron | 25.0% |
| !!! | GAGAAGTAAGTTTAATTTTG+TGG | - | chr7.2:7133926-7133945 | MS.gene23050:intron | 25.0% |
| !!! | TAATGCTTATTTTAGTTGCA+AGG | - | chr7.2:7133682-7133701 | MS.gene23050:intron | 25.0% |
| !!! | TGTGTGCATAGATTTTTTTT+GGG | - | chr7.2:7133229-7133248 | MS.gene23050:CDS | 25.0% |
| !!! | TTTTTTTTCTCTGTGTGATT+TGG | - | chr7.2:7134650-7134669 | MS.gene23050:intron | 25.0% |
| AAAAAAAAACACCCAATTGC+AGG | + | chr7.2:7134912-7134931 | None:intergenic | 30.0% | |
| AAGAAAGATAGAGGCAAAAA+TGG | + | chr7.2:7133868-7133887 | None:intergenic | 30.0% | |
| AGCAAATATGATCTTGCTTT+AGG | + | chr7.2:7135080-7135099 | None:intergenic | 30.0% | |
| AGTTCTTCATAACCACATTA+AGG | - | chr7.2:7134213-7134232 | MS.gene23050:intron | 30.0% | |
| ATCATGAATAAAACAGTAGG+TGG | + | chr7.2:7135038-7135057 | None:intergenic | 30.0% | |
| ATGAATTAATCTAAGAAGCC+AGG | + | chr7.2:7133835-7133854 | None:intergenic | 30.0% | |
| CATCATGTATCGTATAATGT+GGG | - | chr7.2:7134570-7134589 | MS.gene23050:intron | 30.0% | |
| GCACACATTCTAAACATATA+TGG | + | chr7.2:7133216-7133235 | None:intergenic | 30.0% | |
| GGATATAATATACTGTTGAG+GGG | - | chr7.2:7133947-7133966 | MS.gene23050:intron | 30.0% | |
| GTGGATATAATATACTGTTG+AGG | - | chr7.2:7133945-7133964 | MS.gene23050:intron | 30.0% | |
| ! | AACAGAGTACCTAATTTAGA+GGG | - | chr7.2:7134028-7134047 | MS.gene23050:intron | 30.0% |
| ! | GCATTGATAAAGAAAGATAG+AGG | + | chr7.2:7133877-7133896 | None:intergenic | 30.0% |
| ! | TGATTTAGTTCCTGAAATTG+AGG | - | chr7.2:7133014-7133033 | MS.gene23050:intron | 30.0% |
| ! | TTTTCATGGAATCAACAATG+TGG | + | chr7.2:7133807-7133826 | None:intergenic | 30.0% |
| !! | AGAGCTTGTTTTTCTGTTTA+AGG | - | chr7.2:7134261-7134280 | MS.gene23050:intron | 30.0% |
| !! | CAGAAAAACAAGCTCTAAAT+TGG | + | chr7.2:7134257-7134276 | None:intergenic | 30.0% |
| !! | TAATATCTTTAAAGTGGAGC+TGG | + | chr7.2:7134086-7134105 | None:intergenic | 30.0% |
| !! | TTGACTGGTTTGATTGATTA+CGG | - | chr7.2:7133491-7133510 | MS.gene23050:intron | 30.0% |
| !!! | TTTTAGGGCTGTTTAGTTTA+AGG | + | chr7.2:7134456-7134475 | None:intergenic | 30.0% |
| AAAAAATTGCTTCTGTGGAG+TGG | + | chr7.2:7134970-7134989 | None:intergenic | 35.0% | |
| AAAGCTATAACACAGTTTCC+AGG | + | chr7.2:7133446-7133465 | None:intergenic | 35.0% | |
| AAGATCTGAAGAAGCAAAGA+TGG | + | chr7.2:7134798-7134817 | None:intergenic | 35.0% | |
| AAGCTATAACACAGTTTCCA+GGG | + | chr7.2:7133445-7133464 | None:intergenic | 35.0% | |
| AATCCATATGACCTGCAATT+GGG | - | chr7.2:7134898-7134917 | MS.gene23050:CDS | 35.0% | |
| AATTTATCATCCGAAACCTG+CGG | + | chr7.2:7133069-7133088 | None:intergenic | 35.0% | |
| AGTCAAAAAACCAAAACCAC+TGG | + | chr7.2:7133743-7133762 | None:intergenic | 35.0% | |
| AGTGATCCATAGAAAGAAGA+GGG | + | chr7.2:7133099-7133118 | None:intergenic | 35.0% | |
| CCACATTAAGGATAGTTAAC+TGG | - | chr7.2:7134225-7134244 | MS.gene23050:intron | 35.0% | |
| CCAGTTAACTATCCTTAATG+TGG | + | chr7.2:7134228-7134247 | None:intergenic | 35.0% | |
| CTGAATGTAATGTTAAGTCC+TGG | - | chr7.2:7133264-7133283 | MS.gene23050:CDS | 35.0% | |
| CTTTCTTTATCAATGCTTGC+AGG | - | chr7.2:7133881-7133900 | MS.gene23050:CDS | 35.0% | |
| GCATCATGTATCGTATAATG+TGG | - | chr7.2:7134569-7134588 | MS.gene23050:intron | 35.0% | |
| GGCATCATGAATAAAACAGT+AGG | + | chr7.2:7135041-7135060 | None:intergenic | 35.0% | |
| GTCAAAAAACCAAAACCACT+GGG | + | chr7.2:7133742-7133761 | None:intergenic | 35.0% | |
| GTGATGCTTCTTAGATACTT+TGG | - | chr7.2:7134604-7134623 | MS.gene23050:intron | 35.0% | |
| TAATCCATATGACCTGCAAT+TGG | - | chr7.2:7134897-7134916 | MS.gene23050:CDS | 35.0% | |
| TCAAAAAACCAAAACCACTG+GGG | + | chr7.2:7133741-7133760 | None:intergenic | 35.0% | |
| TCATACTTTGGTTGATCTCT+AGG | - | chr7.2:7133188-7133207 | MS.gene23050:intron | 35.0% | |
| TCTGTTCACTCATAACTTGA+GGG | + | chr7.2:7134014-7134033 | None:intergenic | 35.0% | |
| TGGAAACTGTGTTATAGCTT+TGG | - | chr7.2:7133445-7133464 | MS.gene23050:intron | 35.0% | |
| TTAGGTCCTGAAAAAACAGA+CGG | + | chr7.2:7135062-7135081 | None:intergenic | 35.0% | |
| TTTCTATGGATCACTCTCAA+TGG | - | chr7.2:7133104-7133123 | MS.gene23050:intron | 35.0% | |
| ! | ATCTTCGAGTTCGATTAGAT+CGG | + | chr7.2:7132873-7132892 | None:intergenic | 35.0% |
| ! | CTTTGAGTTTGAAACAGCTT+GGG | - | chr7.2:7133562-7133581 | MS.gene23050:intron | 35.0% |
| ! | GAACAGAGTACCTAATTTAG+AGG | - | chr7.2:7134027-7134046 | MS.gene23050:intron | 35.0% |
| ! | TATTTTGCAATGGTCGAATC+AGG | + | chr7.2:7134821-7134840 | None:intergenic | 35.0% |
| ! | TCTTTGAGTTTGAAACAGCT+TGG | - | chr7.2:7133561-7133580 | MS.gene23050:intron | 35.0% |
| ! | TTTAGTTCCTGAAATTGAGG+AGG | - | chr7.2:7133017-7133036 | MS.gene23050:intron | 35.0% |
| !! | GTTTCCTTTGAAGAGCTTTT+AGG | - | chr7.2:7132815-7132834 | MS.gene23050:CDS | 35.0% |
| !!! | ATGGGAGGTAAGGTTTTTTA+TGG | - | chr7.2:7134153-7134172 | MS.gene23050:intron | 35.0% |
| !!! | TATAGCTTTGTAGTTTTCCC+TGG | - | chr7.2:7133425-7133444 | MS.gene23050:intron | 35.0% |
| AAAACAGTAGGTGGTAAGTC+AGG | + | chr7.2:7135029-7135048 | None:intergenic | 40.0% | |
| AAACAGTAGGTGGTAAGTCA+GGG | + | chr7.2:7135028-7135047 | None:intergenic | 40.0% | |
| ACCTAATTTAGAGGGAGACA+AGG | - | chr7.2:7134036-7134055 | MS.gene23050:intron | 40.0% | |
| ATGAAGAACTAGCATCCCTT+TGG | + | chr7.2:7134203-7134222 | None:intergenic | 40.0% | |
| ATGTCTTCCTGCCTATATGA+AGG | - | chr7.2:7134120-7134139 | MS.gene23050:intron | 40.0% | |
| ATGTGTGAATGGTAAGTTGC+TGG | + | chr7.2:7134943-7134962 | None:intergenic | 40.0% | |
| CCAGATGGTAAAATGTTGCA+GGG | - | chr7.2:7133331-7133350 | MS.gene23050:intron | 40.0% | |
| CCTAATTTAGAGGGAGACAA+GGG | - | chr7.2:7134037-7134056 | MS.gene23050:intron | 40.0% | |
| CTAATTTAGAGGGAGACAAG+GGG | - | chr7.2:7134038-7134057 | MS.gene23050:intron | 40.0% | |
| CTCTGTTCACTCATAACTTG+AGG | + | chr7.2:7134015-7134034 | None:intergenic | 40.0% | |
| CTGTTCACTCATAACTTGAG+GGG | + | chr7.2:7134013-7134032 | None:intergenic | 40.0% | |
| CTTTAGCATCTGAAGGTTAG+TGG | - | chr7.2:7133607-7133626 | MS.gene23050:intron | 40.0% | |
| GAACTTCTTGAAGCCAGAAT+CGG | + | chr7.2:7133130-7133149 | None:intergenic | 40.0% | |
| GAGTGATCCATAGAAAGAAG+AGG | + | chr7.2:7133100-7133119 | None:intergenic | 40.0% | |
| GATAGTCCCTCTTCTTTCTA+TGG | - | chr7.2:7133090-7133109 | MS.gene23050:intron | 40.0% | |
| GATCGTCTTAAAAGCTGCTA+TGG | - | chr7.2:7132890-7132909 | MS.gene23050:intron | 40.0% | |
| GATTACGGTTCTTGAAAAGC+TGG | - | chr7.2:7133506-7133525 | MS.gene23050:intron | 40.0% | |
| GATTCCATGAAAACTAGACC+TGG | - | chr7.2:7133814-7133833 | MS.gene23050:CDS | 40.0% | |
| GCAGGTTTCGGATGATAAAT+TGG | - | chr7.2:7133068-7133087 | MS.gene23050:intron | 40.0% | |
| TCATCTTCCTCCTCAATTTC+AGG | + | chr7.2:7133027-7133046 | None:intergenic | 40.0% | |
| TCTTGTACAATTCGTTGCAG+TGG | + | chr7.2:7132841-7132860 | None:intergenic | 40.0% | |
| TGATGCTAGAGCCTTCATAT+AGG | + | chr7.2:7134134-7134153 | None:intergenic | 40.0% | |
| TGCTAAAGAGGGATCTTGAA+AGG | + | chr7.2:7134869-7134888 | None:intergenic | 40.0% | |
| ! | AGGCATGCTTGTTACTTACT+TGG | - | chr7.2:7133650-7133669 | MS.gene23050:intron | 40.0% |
| ! | ATATGAAGGCTCTAGCATCA+TGG | - | chr7.2:7134134-7134153 | MS.gene23050:intron | 40.0% |
| ! | CTAGCTACTTTAGCATCTGA+AGG | - | chr7.2:7133600-7133619 | MS.gene23050:intron | 40.0% |
| ! | TATGAAGGCTCTAGCATCAT+GGG | - | chr7.2:7134135-7134154 | MS.gene23050:intron | 40.0% |
| !!! | ATGATGCCGTCTGTTTTTTC+AGG | - | chr7.2:7135053-7135072 | MS.gene23050:CDS | 40.0% |
| ACACCCAATTGCAGGTCATA+TGG | + | chr7.2:7134904-7134923 | None:intergenic | 45.0% | |
| ACCAAAACCACTGGGGAAAA+TGG | + | chr7.2:7133734-7133753 | None:intergenic | 45.0% | |
| ACGGAAGAAGTTGCTTCCAT+CGG | + | chr7.2:7134733-7134752 | None:intergenic | 45.0% | |
| ATGGTCGTTGAGACAGTTGA+TGG | - | chr7.2:7135122-7135141 | MS.gene23050:CDS | 45.0% | |
| CAACTGTCTCAACGACCATA+CGG | + | chr7.2:7135121-7135140 | None:intergenic | 45.0% | |
| CCCTTGTCTCCCTCTAAATT+AGG | + | chr7.2:7134040-7134059 | None:intergenic | 45.0% | |
| GCCAGATGGTAAAATGTTGC+AGG | - | chr7.2:7133330-7133349 | MS.gene23050:intron | 45.0% | |
| GGAGTGGCTTAATGTGTGAA+TGG | + | chr7.2:7134954-7134973 | None:intergenic | 45.0% | |
| GTAAGTAACAAGCATGCCTG+TGG | + | chr7.2:7133649-7133668 | None:intergenic | 45.0% | |
| GTAAGTCAGGGCTAGAATTC+AGG | + | chr7.2:7135016-7135035 | None:intergenic | 45.0% | |
| GTGGCCTAAAAGCTCTTCAA+AGG | + | chr7.2:7132822-7132841 | None:intergenic | 45.0% | |
| TTACCATCTGGCTGAACCAA+CGG | + | chr7.2:7133322-7133341 | None:intergenic | 45.0% | |
| TTCCATCGGTCTTCTTGCTT+AGG | + | chr7.2:7134719-7134738 | None:intergenic | 45.0% | |
| ! | CATTGTTCCATTTTCCCCAG+TGG | - | chr7.2:7133724-7133743 | MS.gene23050:intron | 45.0% |
| ! | CCCTGCAACATTTTACCATC+TGG | + | chr7.2:7133334-7133353 | None:intergenic | 45.0% |
| ! | TCCATTTTCCCCAGTGGTTT+TGG | - | chr7.2:7133730-7133749 | MS.gene23050:intron | 45.0% |
| ! | TCTGTGTGATTTGGCCTTCT+AGG | - | chr7.2:7134659-7134678 | MS.gene23050:intron | 45.0% |
| !!! | GAAGCCAGGTCTAGTTTTCA+TGG | + | chr7.2:7133821-7133840 | None:intergenic | 45.0% |
| !!! | TTTTTTTTAAAATAGTTTAT+GGG | - | chr7.2:7134986-7135005 | MS.gene23050:intron | 5.0% |
| !!! | TTTTTTTTTAAAATAGTTTA+TGG | - | chr7.2:7134985-7135004 | MS.gene23050:intron | 5.0% |
| AGAGGGAGACAAGGGGAATT+TGG | - | chr7.2:7134045-7134064 | MS.gene23050:CDS | 50.0% | |
| AGCCACGAGTAGATCCTAGA+AGG | + | chr7.2:7134676-7134695 | None:intergenic | 50.0% | |
| AGCCTAAGCAAGAAGACCGA+TGG | - | chr7.2:7134714-7134733 | MS.gene23050:intron | 50.0% | |
| ATCACATACGGTAGTCCCGT+TGG | - | chr7.2:7133303-7133322 | MS.gene23050:intron | 50.0% | |
| CTCTAGCATCATGGGAGGTA+AGG | - | chr7.2:7134143-7134162 | MS.gene23050:intron | 50.0% | |
| CTCTTCAAAGGAAACCGTGC+TGG | + | chr7.2:7132810-7132829 | None:intergenic | 50.0% | |
| GCTAGAGCCTTCATATAGGC+AGG | + | chr7.2:7134130-7134149 | None:intergenic | 50.0% | |
| TACCATCTGGCTGAACCAAC+GGG | + | chr7.2:7133321-7133340 | None:intergenic | 50.0% | |
| TCTAGTGCGCATGAACCGTA+TGG | - | chr7.2:7135103-7135122 | MS.gene23050:CDS | 50.0% | |
| ! | TCACTCTCAATGGCCGATTC+TGG | - | chr7.2:7133114-7133133 | MS.gene23050:intron | 50.0% |
| ! | TTATGATGTACAAGCGCCGC+AGG | - | chr7.2:7133050-7133069 | MS.gene23050:intron | 50.0% |
| AGCTGCTATGGCTACGTTCC+AGG | - | chr7.2:7132902-7132921 | MS.gene23050:intron | 55.0% | |
| CTTGAGGGGTGAGATCATGC+AGG | + | chr7.2:7133999-7134018 | None:intergenic | 55.0% | |
| ! | GAAGGCTCTAGCATCATGGG+AGG | - | chr7.2:7134138-7134157 | MS.gene23050:intron | 55.0% |
| ! | TGTACAAGCGCCGCAGGTTT+CGG | - | chr7.2:7133056-7133075 | MS.gene23050:intron | 55.0% |
| !! | GGCCTTCTAGGATCTACTCG+TGG | - | chr7.2:7134671-7134690 | MS.gene23050:intron | 55.0% |
| !! | GTCCCGTTGGTTCAGCCAGA+TGG | - | chr7.2:7133316-7133335 | MS.gene23050:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 7132803 | 7135169 | 7132803 | ID=MS.gene23050 |
| chr7.2 | mRNA | 7132803 | 7135169 | 7132803 | ID=MS.gene23050.t1;Parent=MS.gene23050 |
| chr7.2 | exon | 7135049 | 7135169 | 7135049 | ID=MS.gene23050.t1.exon1;Parent=MS.gene23050.t1 |
| chr7.2 | CDS | 7135049 | 7135169 | 7135049 | ID=cds.MS.gene23050.t1;Parent=MS.gene23050.t1 |
| chr7.2 | exon | 7134809 | 7134950 | 7134809 | ID=MS.gene23050.t1.exon2;Parent=MS.gene23050.t1 |
| chr7.2 | CDS | 7134809 | 7134950 | 7134809 | ID=cds.MS.gene23050.t1;Parent=MS.gene23050.t1 |
| chr7.2 | exon | 7134351 | 7134421 | 7134351 | ID=MS.gene23050.t1.exon3;Parent=MS.gene23050.t1 |
| chr7.2 | CDS | 7134351 | 7134421 | 7134351 | ID=cds.MS.gene23050.t1;Parent=MS.gene23050.t1 |
| chr7.2 | exon | 7134042 | 7134069 | 7134042 | ID=MS.gene23050.t1.exon4;Parent=MS.gene23050.t1 |
| chr7.2 | CDS | 7134042 | 7134069 | 7134042 | ID=cds.MS.gene23050.t1;Parent=MS.gene23050.t1 |
| chr7.2 | exon | 7133813 | 7133939 | 7133813 | ID=MS.gene23050.t1.exon5;Parent=MS.gene23050.t1 |
| chr7.2 | CDS | 7133813 | 7133939 | 7133813 | ID=cds.MS.gene23050.t1;Parent=MS.gene23050.t1 |
| chr7.2 | exon | 7133192 | 7133291 | 7133192 | ID=MS.gene23050.t1.exon6;Parent=MS.gene23050.t1 |
| chr7.2 | CDS | 7133192 | 7133291 | 7133192 | ID=cds.MS.gene23050.t1;Parent=MS.gene23050.t1 |
| chr7.2 | exon | 7132803 | 7132897 | 7132803 | ID=MS.gene23050.t1.exon7;Parent=MS.gene23050.t1 |
| chr7.2 | CDS | 7132803 | 7132897 | 7132803 | ID=cds.MS.gene23050.t1;Parent=MS.gene23050.t1 |
| Gene Sequence |
| Protein sequence |
