AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene058013


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058013.t1 AT3G02820 48.375 277 127 7 8 274 6 276 9.65e-79 240
MS.gene058013.t1 AT3G02820 48.375 277 127 7 8 274 23 293 1.74e-78 240

Find 79 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACAGACTGGTTCCATTATT+TGG 0.093724 4.2:-33618136 None:intergenic
TAGGGTTTGGATTGGGATTT+GGG 0.153645 4.2:-33615752 None:intergenic
TGAATGTCGTTAACAGTTTC+AGG 0.178272 4.2:-33617533 None:intergenic
GCGGTGGAGGTGGTGGTGTT+AGG 0.206154 4.2:-33615771 None:intergenic
CTCTTTCTCTTAATTCTCTA+AGG 0.235487 4.2:-33616834 None:intergenic
TTAGGGTTTGGATTGGGATT+TGG 0.242699 4.2:-33615753 None:intergenic
GAGGTGGTGGTGTTAGGGTT+TGG 0.285661 4.2:-33615765 None:intergenic
GTAACAACCTGTTGCTGTTC+CGG 0.287274 4.2:-33615682 None:intergenic
AGAAGCTCGGGAGTGAGTTT+TGG 0.293857 4.2:-33615873 None:intergenic
TCAAATGAAGTCCCAAATAA+TGG 0.319473 4.2:+33618124 MS.gene058013:CDS
AGGTGGATCGGCGGTGGAGG+TGG 0.322815 4.2:-33615781 None:intergenic
CTTCTCTCTGATGACGGCCT+TGG 0.344424 4.2:+33615894 MS.gene058013:CDS
GTGGTGTTAGGGTTTGGATT+GGG 0.352807 4.2:-33615759 None:intergenic
ACAGACTGGTTCCATTATTT+GGG 0.352932 4.2:-33618135 None:intergenic
CGGTGGAGGTGGTGGTGTTA+GGG 0.379415 4.2:-33615770 None:intergenic
TGCTGTTATCTCAGCACTGC+TGG 0.389855 4.2:-33618158 None:intergenic
GGAGGTAGGTGGATCGGCGG+TGG 0.391333 4.2:-33615787 None:intergenic
TTGCTGTATCTGCAGAAAAT+GGG 0.395630 4.2:+33617474 MS.gene058013:intron
AGATTACCTTGTTCACCATC+TGG 0.397013 4.2:-33616916 None:intergenic
GGTAGGTGGATCGGCGGTGG+AGG 0.397936 4.2:-33615784 None:intergenic
TGCTGCTACTAGGCGTGTTA+AGG 0.413675 4.2:+33616164 MS.gene058013:CDS
TGGATCGGCGGTGGAGGTGG+TGG 0.423688 4.2:-33615778 None:intergenic
TCAGGATCCGGAACAGCAAC+AGG 0.431444 4.2:+33615675 MS.gene058013:CDS
AAGACTGTGGTATGCTGGCT+CGG 0.435771 4.2:-33618237 None:intergenic
GGTGGTGTTAGGGTTTGGAT+TGG 0.441623 4.2:-33615760 None:intergenic
TCAACCTATTTGCTTCCATA+CGG 0.452181 4.2:-33618192 None:intergenic
GAGCCCGTATGGAAGCAAAT+AGG 0.454008 4.2:+33618188 MS.gene058013:CDS
CTCAGCACTGCTGGACAGAC+TGG 0.455206 4.2:-33618149 None:intergenic
GGGATGCTGTCGTCCACAAC+TGG 0.457982 4.2:-33616895 None:intergenic
CTAGGAAGACTGTGGTATGC+TGG 0.471259 4.2:-33618242 None:intergenic
GAAGAGAAAATGTCAGGATC+CGG 0.473828 4.2:+33615663 None:intergenic
ACCTCCACCTTCAAACCCTC+TGG 0.474558 4.2:+33615804 MS.gene058013:CDS
AGAAGAGAAGAGAAAATGTC+AGG 0.483482 4.2:+33615657 None:intergenic
CAACCTATTTGCTTCCATAC+GGG 0.491149 4.2:-33618191 None:intergenic
AGCAGAGCAGAGAGCCCGTA+TGG 0.494494 4.2:+33618177 MS.gene058013:CDS
TCTGGGTCCAGAGGGTTTGA+AGG 0.495023 4.2:-33615811 None:intergenic
TTGGGATTTGGGGCGGTGAA+AGG 0.495060 4.2:-33615741 None:intergenic
TTAAGAGAAAGAGTTGCAAA+TGG 0.496853 4.2:+33616844 MS.gene058013:CDS
GTTTGGATTGGGATTTGGGG+CGG 0.497587 4.2:-33615748 None:intergenic
TTGAGAAAGTTGCTGCTACT+AGG 0.498945 4.2:+33616154 MS.gene058013:CDS
TCATCAGAGAGAAGAAGCTC+GGG 0.503800 4.2:-33615885 None:intergenic
GTCATCAGAGAGAAGAAGCT+CGG 0.508978 4.2:-33615886 None:intergenic
GATTACCTTGTTCACCATCT+GGG 0.514063 4.2:-33616915 None:intergenic
TGTTACAAATGCGGCAGACC+AGG 0.517761 4.2:+33615699 MS.gene058013:CDS
AGGGTTTGGATTGGGATTTG+GGG 0.518659 4.2:-33615751 None:intergenic
GGTTTGAAGGTGGAGGTAGG+TGG 0.525605 4.2:-33615798 None:intergenic
GAGAAAGAGTTGCAAATGGT+GGG 0.533112 4.2:+33616848 MS.gene058013:CDS
GAAGGTGGAGGTAGGTGGAT+CGG 0.539108 4.2:-33615793 None:intergenic
AGAGAAAGAGTTGCAAATGG+TGG 0.541281 4.2:+33616847 MS.gene058013:CDS
TATGGAAGCAAATAGGTTGA+AGG 0.541904 4.2:+33618195 MS.gene058013:CDS
TGCTTGACTTATACTCTGAC+TGG 0.544504 4.2:+33616082 MS.gene058013:CDS
ATAGGTTGAAGGCACTAGAA+AGG 0.545276 4.2:+33618206 MS.gene058013:CDS
AACTTCAAATACCACGGTCG+CGG 0.560735 4.2:+33615942 MS.gene058013:CDS
CCGTGGTATTTGAAGTTGCG+AGG 0.565970 4.2:-33615936 None:intergenic
TGCTGTATCTGCAGAAAATG+GGG 0.567337 4.2:+33617475 MS.gene058013:intron
CAGTCGCGTGACCAGTGACC+TGG 0.568375 4.2:-33615717 None:intergenic
GGTGGTTCACGCAACTTCGA+TGG 0.570994 4.2:-33616874 None:intergenic
AGACTGTGGTATGCTGGCTC+GGG 0.572569 4.2:-33618236 None:intergenic
GGGTCCAGAGGGTTTGAAGG+TGG 0.574431 4.2:-33615808 None:intergenic
TCCAGAGGGTTTGAAGGTGG+AGG 0.577332 4.2:-33615805 None:intergenic
AATTGATTGAAAGAGTAATA+CGG 0.577716 4.2:-33616120 None:intergenic
AATGCGGCAGACCAGGTCAC+TGG 0.581408 4.2:+33615706 MS.gene058013:CDS
CAACCTCATGGCCGCGACCG+TGG 0.581868 4.2:-33615953 None:intergenic
GACGGCGGATCTGGGTCCAG+AGG 0.589738 4.2:-33615820 None:intergenic
AGCATCCCAGATGGTGAACA+AGG 0.590534 4.2:+33616910 MS.gene058013:CDS
CGTGGTATTTGAAGTTGCGA+GGG 0.591626 4.2:-33615935 None:intergenic
GAGGGTTTGAAGGTGGAGGT+AGG 0.595710 4.2:-33615801 None:intergenic
ACGGCGGATCTGGGTCCAGA+GGG 0.600152 4.2:-33615819 None:intergenic
GAGCTTCTTCTCTCTGATGA+CGG 0.601771 4.2:+33615888 MS.gene058013:CDS
GGTGGAGGTAGGTGGATCGG+CGG 0.604040 4.2:-33615790 None:intergenic
GTTGCGTGAACCACCAGTTG+TGG 0.626399 4.2:+33616882 MS.gene058013:CDS
AGAAAGAGTTGCAAATGGTG+GGG 0.639503 4.2:+33616849 MS.gene058013:CDS
ATACCACGGTCGCGGCCATG+AGG 0.648998 4.2:+33615950 MS.gene058013:CDS
ATGCTGTCGTCCACAACTGG+TGG 0.670186 4.2:-33616892 None:intergenic
GTGGACGACAGCATCCCAGA+TGG 0.678430 4.2:+33616901 MS.gene058013:CDS
CCTCGCAACTTCAAATACCA+CGG 0.686072 4.2:+33615936 MS.gene058013:CDS
GCAACAGGTTGTTACAAATG+CGG 0.691238 4.2:+33615690 MS.gene058013:CDS
AATAGCGAAGAACGTAACCA+AGG 0.694872 4.2:-33615911 None:intergenic
TATCAAAGCTAGGAAGACTG+TGG 0.695853 4.2:-33618250 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAACAATTAATTAAGAAAA+AGG - chr4.2:33615992-33616011 None:intergenic 10.0%
!!! TAAAATCTAATTAGTTCTTT+TGG - chr4.2:33617410-33617429 None:intergenic 15.0%
!! AATAACGAAGCTTAAAAATA+AGG + chr4.2:33616342-33616361 MS.gene058013:intron 20.0%
!! AATTGATTGAAAGAGTAATA+CGG - chr4.2:33616123-33616142 None:intergenic 20.0%
!! ATTCACATACAATTGAAAAA+AGG - chr4.2:33617196-33617215 None:intergenic 20.0%
!! TTGAAAAAAGGAAAATTAAG+AGG - chr4.2:33617184-33617203 None:intergenic 20.0%
!!! ACTTAATTGTTTGTTTTGTT+AGG + chr4.2:33616041-33616060 MS.gene058013:intron 20.0%
!!! ATGCATATTTTTCTTTCAAT+TGG + chr4.2:33616602-33616621 MS.gene058013:intron 20.0%
!!! ATTTTTAAGCTTCGTTATTA+TGG - chr4.2:33616341-33616360 None:intergenic 20.0%
!!! TTCAATTACACTCAAAATTT+TGG - chr4.2:33616274-33616293 None:intergenic 20.0%
!!! TTTTTAAGCTTCGTTATTAT+GGG - chr4.2:33616340-33616359 None:intergenic 20.0%
! AAAAAGGAAAATTAAGAGGA+AGG - chr4.2:33617180-33617199 None:intergenic 25.0%
! AACAAACAATTAAGTGATTG+CGG - chr4.2:33616036-33616055 None:intergenic 25.0%
! AAGCTTAAAAATAAGGACTT+TGG + chr4.2:33616349-33616368 MS.gene058013:intron 25.0%
! AGATGAGTACAAATATGATT+AGG + chr4.2:33616293-33616312 MS.gene058013:intron 25.0%
! ATACAGCAAAATCCAATATA+GGG - chr4.2:33617463-33617482 None:intergenic 25.0%
! ATGAGTACAAATATGATTAG+GGG + chr4.2:33616295-33616314 MS.gene058013:intron 25.0%
! ATGATCAAATTGTCAATTGT+TGG - chr4.2:33617250-33617269 None:intergenic 25.0%
! CAAAGAAATTAAACTCACTT+CGG - chr4.2:33617594-33617613 None:intergenic 25.0%
! CAGGTGATTAATTCAATAAA+TGG - chr4.2:33617121-33617140 None:intergenic 25.0%
! GATGAGTACAAATATGATTA+GGG + chr4.2:33616294-33616313 MS.gene058013:intron 25.0%
! TATCATTAATAACACACTTC+TGG - chr4.2:33617809-33617828 None:intergenic 25.0%
! TCACTAAATAGAAGTGATAA+TGG - chr4.2:33617975-33617994 None:intergenic 25.0%
! TGATTGATGGAAAATAGTTA+TGG - chr4.2:33616572-33616591 None:intergenic 25.0%
! TTAAACACAAAGTTTGAACA+AGG - chr4.2:33616783-33616802 None:intergenic 25.0%
! TTCTAGACTAACTTTACTAT+AGG - chr4.2:33617059-33617078 None:intergenic 25.0%
! TTTCTGAACAACTTTATAAC+AGG - chr4.2:33617140-33617159 None:intergenic 25.0%
!! AACTGATTCATATTTCAAAC+AGG + chr4.2:33617334-33617353 MS.gene058013:intron 25.0%
!! ACTGATTCATATTTCAAACA+GGG + chr4.2:33617335-33617354 MS.gene058013:intron 25.0%
!! AGTGTGTTATTAATGATACA+AGG + chr4.2:33617811-33617830 MS.gene058013:intron 25.0%
!! GAAATCTGTTAAAACACTTT+TGG + chr4.2:33617687-33617706 MS.gene058013:intron 25.0%
!! GTGTGTTATTAATGATACAA+GGG + chr4.2:33617812-33617831 MS.gene058013:intron 25.0%
!! TAGGTATTTTCTTAGATATG+TGG + chr4.2:33617008-33617027 MS.gene058013:intron 25.0%
!! TGAACATTTTCTTTTGTGAA+AGG + chr4.2:33617665-33617684 MS.gene058013:intron 25.0%
!!! ATGAAGGAATACATTGATTT+TGG + chr4.2:33617302-33617321 MS.gene058013:intron 25.0%
AAAGCATAAAAACATAGCAG+AGG - chr4.2:33616663-33616682 None:intergenic 30.0%
AGAAATCTAGAGACTTAAGA+AGG - chr4.2:33617913-33617932 None:intergenic 30.0%
CAATATTCCAGTGAACTATA+TGG - chr4.2:33617374-33617393 None:intergenic 30.0%
CATTAGTTGAAGATGATTGA+TGG - chr4.2:33616585-33616604 None:intergenic 30.0%
CTCTTTCTCTTAATTCTCTA+AGG - chr4.2:33616837-33616856 None:intergenic 30.0%
GATAAACCAAATCGTAAACA+AGG + chr4.2:33617993-33618012 MS.gene058013:intron 30.0%
GATACAGCAAAATCCAATAT+AGG - chr4.2:33617464-33617483 None:intergenic 30.0%
GCATAATGTTAAAAGTTCAG+TGG + chr4.2:33616233-33616252 MS.gene058013:intron 30.0%
TAAAAACATAGCAGAGGAAT+TGG - chr4.2:33616657-33616676 None:intergenic 30.0%
TAATAACACACTTCTGGATA+AGG - chr4.2:33617803-33617822 None:intergenic 30.0%
TACTCACAAATTTGTGAGAA+TGG - chr4.2:33617732-33617751 None:intergenic 30.0%
TCAAATGAAGTCCCAAATAA+TGG + chr4.2:33618124-33618143 MS.gene058013:CDS 30.0%
TCAACAGATATAAAGCCATA+GGG - chr4.2:33616731-33616750 None:intergenic 30.0%
TGAGATTAATTACAACCTCA+TGG - chr4.2:33615968-33615987 None:intergenic 30.0%
TGTGAGTAATCTGAATTGTT+TGG + chr4.2:33617744-33617763 MS.gene058013:intron 30.0%
TTAAGAGAAAGAGTTGCAAA+TGG + chr4.2:33616844-33616863 MS.gene058013:CDS 30.0%
TTCAACAGATATAAAGCCAT+AGG - chr4.2:33616732-33616751 None:intergenic 30.0%
TTGCTTGCGTTTGAATTAAT+AGG + chr4.2:33616989-33617008 MS.gene058013:intron 30.0%
TTTGCTAAGTATCCCTATAT+TGG + chr4.2:33617448-33617467 MS.gene058013:intron 30.0%
! TTTTGTTAGGTTCGTGATTT+GGG + chr4.2:33616054-33616073 MS.gene058013:intron 30.0%
!! TAGAAAGGCATTACAAACTT+AGG - chr4.2:33618026-33618045 None:intergenic 30.0%
!!! TTTTCAGTTGTGCTACTTTT+GGG - chr4.2:33618100-33618119 None:intergenic 30.0%
ACCATAGGTAGACAAAATGA+AGG + chr4.2:33617286-33617305 MS.gene058013:intron 35.0%
ATTTGATCATTGAAGCTCAC+TGG + chr4.2:33617260-33617279 MS.gene058013:intron 35.0%
GTGAACTATATGGAATCAGT+TGG - chr4.2:33617364-33617383 None:intergenic 35.0%
TCAACCTATTTGCTTCCATA+CGG - chr4.2:33618195-33618214 None:intergenic 35.0%
TGAATGTCGTTAACAGTTTC+AGG - chr4.2:33617536-33617555 None:intergenic 35.0%
TTAAGCTTCGTTATTATGGG+TGG - chr4.2:33616337-33616356 None:intergenic 35.0%
TTAGAGACTATTTGAACGTC+TGG + chr4.2:33617871-33617890 MS.gene058013:intron 35.0%
TTAGTCTCGTGTATGCAAAA+AGG + chr4.2:33616501-33616520 MS.gene058013:intron 35.0%
TTGCTGTATCTGCAGAAAAT+GGG + chr4.2:33617474-33617493 MS.gene058013:intron 35.0%
TTGTAATGCCTTTCTATTGC+AGG + chr4.2:33618030-33618049 MS.gene058013:intron 35.0%
! ACAGACTGGTTCCATTATTT+GGG - chr4.2:33618138-33618157 None:intergenic 35.0%
! ACTGATTCCATATAGTTCAC+TGG + chr4.2:33617364-33617383 MS.gene058013:intron 35.0%
! ATTGTTGGTTGTAATCTCTC+TGG - chr4.2:33617235-33617254 None:intergenic 35.0%
! TATGGAAGCAAATAGGTTGA+AGG + chr4.2:33618195-33618214 MS.gene058013:CDS 35.0%
! TCAGATCCTTGTTTACGATT+TGG - chr4.2:33618002-33618021 None:intergenic 35.0%
! TCATTTTGTCTACCTATGGT+TGG - chr4.2:33617286-33617305 None:intergenic 35.0%
! TCCTTCATTTTGTCTACCTA+TGG - chr4.2:33617290-33617309 None:intergenic 35.0%
! TTTGCTGTATCTGCAGAAAA+TGG + chr4.2:33617473-33617492 MS.gene058013:intron 35.0%
!! ACATGCTGACTTCATAACAA+AGG - chr4.2:33617946-33617965 None:intergenic 35.0%
!! GTTTTGTTAGGTTCGTGATT+TGG + chr4.2:33616053-33616072 MS.gene058013:intron 35.0%
!! TTAATTCTCTAAGGCTAGTC+TGG - chr4.2:33616828-33616847 None:intergenic 35.0%
!!! CTTTTCAGTTGTGCTACTTT+TGG - chr4.2:33618101-33618120 None:intergenic 35.0%
AATAGCGAAGAACGTAACCA+AGG - chr4.2:33615914-33615933 None:intergenic 40.0%
AATCCCTTCTAACGGCAATT+GGG - chr4.2:33616425-33616444 None:intergenic 40.0%
AGAAAGAGTTGCAAATGGTG+GGG + chr4.2:33616849-33616868 MS.gene058013:CDS 40.0%
AGAAGGTTCCTGCAATAGAA+AGG - chr4.2:33618041-33618060 None:intergenic 40.0%
AGAGAAAGAGTTGCAAATGG+TGG + chr4.2:33616847-33616866 MS.gene058013:CDS 40.0%
AGATTACCTTGTTCACCATC+TGG - chr4.2:33616919-33616938 None:intergenic 40.0%
CAACCTATTTGCTTCCATAC+GGG - chr4.2:33618194-33618213 None:intergenic 40.0%
CGACAGTTAATCCCTTCTAA+CGG - chr4.2:33616433-33616452 None:intergenic 40.0%
CGTTAGAAGGGATTAACTGT+CGG + chr4.2:33616431-33616450 MS.gene058013:intron 40.0%
GAGAAAGAGTTGCAAATGGT+GGG + chr4.2:33616848-33616867 MS.gene058013:CDS 40.0%
GATTACCTTGTTCACCATCT+GGG - chr4.2:33616918-33616937 None:intergenic 40.0%
GCAACAGGTTGTTACAAATG+CGG + chr4.2:33615690-33615709 MS.gene058013:CDS 40.0%
GTATTTGCACTTCGCTATCA+AGG + chr4.2:33616948-33616967 MS.gene058013:intron 40.0%
TAATCCCTTCTAACGGCAAT+TGG - chr4.2:33616426-33616445 None:intergenic 40.0%
TGCTGTATCTGCAGAAAATG+GGG + chr4.2:33617475-33617494 MS.gene058013:intron 40.0%
TGCTTGACTTATACTCTGAC+TGG + chr4.2:33616082-33616101 MS.gene058013:CDS 40.0%
TTGAGAAAGTTGCTGCTACT+AGG + chr4.2:33616154-33616173 MS.gene058013:CDS 40.0%
! CGCAGAAATCACATTTTGCA+CGG - chr4.2:33618068-33618087 None:intergenic 40.0%
! GACAGACTGGTTCCATTATT+TGG - chr4.2:33618139-33618158 None:intergenic 40.0%
! GCAGAAATCACATTTTGCAC+GGG - chr4.2:33618067-33618086 None:intergenic 40.0%
! TAGGGTTTGGATTGGGATTT+GGG - chr4.2:33615755-33615774 None:intergenic 40.0%
! TTAGGGTTTGGATTGGGATT+TGG - chr4.2:33615756-33615775 None:intergenic 40.0%
!! AAATTAAGAGGAAGGCGTTC+TGG - chr4.2:33617172-33617191 None:intergenic 40.0%
!! AATTAAGAGGAAGGCGTTCT+GGG - chr4.2:33617171-33617190 None:intergenic 40.0%
!! AGTTCAGTGGATTAGTGTTC+AGG + chr4.2:33616246-33616265 MS.gene058013:intron 40.0%
!! ATAGGTTGAAGGCACTAGAA+AGG + chr4.2:33618206-33618225 MS.gene058013:CDS 40.0%
AACTTCAAATACCACGGTCG+CGG + chr4.2:33615942-33615961 MS.gene058013:CDS 45.0%
ATCCCTTCTAACGGCAATTG+GGG - chr4.2:33616424-33616443 None:intergenic 45.0%
CCTCGCAACTTCAAATACCA+CGG + chr4.2:33615936-33615955 MS.gene058013:CDS 45.0%
GAGCTTCTTCTCTCTGATGA+CGG + chr4.2:33615888-33615907 MS.gene058013:CDS 45.0%
GTCATCAGAGAGAAGAAGCT+CGG - chr4.2:33615889-33615908 None:intergenic 45.0%
TCATCAGAGAGAAGAAGCTC+GGG - chr4.2:33615888-33615907 None:intergenic 45.0%
TTTACGCGTGAGTCAACTCT+AGG + chr4.2:33616385-33616404 MS.gene058013:intron 45.0%
! AGGGTTTGGATTGGGATTTG+GGG - chr4.2:33615754-33615773 None:intergenic 45.0%
! CGTGGTATTTGAAGTTGCGA+GGG - chr4.2:33615938-33615957 None:intergenic 45.0%
! GTAACAACCTGTTGCTGTTC+CGG - chr4.2:33615685-33615704 None:intergenic 45.0%
! GTGGTGTTAGGGTTTGGATT+GGG - chr4.2:33615762-33615781 None:intergenic 45.0%
!! AGGCTTTTTGGGCTTTTCGA+CGG - chr4.2:33615841-33615860 None:intergenic 45.0%
!! TCTAAGGCTAGTCTGGTTAG+AGG - chr4.2:33616821-33616840 None:intergenic 45.0%
AGCATCCCAGATGGTGAACA+AGG + chr4.2:33616910-33616929 MS.gene058013:CDS 50.0%
CTAACGGCAATTGGGGACAA+TGG - chr4.2:33616417-33616436 None:intergenic 50.0%
CTAGGAAGACTGTGGTATGC+TGG - chr4.2:33618245-33618264 None:intergenic 50.0%
GAGCCCGTATGGAAGCAAAT+AGG + chr4.2:33618188-33618207 MS.gene058013:CDS 50.0%
GCTCTGTATCTCTCTCCCTA+TGG + chr4.2:33616713-33616732 MS.gene058013:intron 50.0%
GGGAGAGAGATACAGAGCAA+TGG - chr4.2:33616711-33616730 None:intergenic 50.0%
GTCCCCAATTGCCGTTAGAA+GGG + chr4.2:33616419-33616438 MS.gene058013:intron 50.0%
TGCTGCTACTAGGCGTGTTA+AGG + chr4.2:33616164-33616183 MS.gene058013:CDS 50.0%
TGCTGTTATCTCAGCACTGC+TGG - chr4.2:33618161-33618180 None:intergenic 50.0%
TGTCCCCAATTGCCGTTAGA+AGG + chr4.2:33616418-33616437 MS.gene058013:intron 50.0%
TGTTACAAATGCGGCAGACC+AGG + chr4.2:33615699-33615718 MS.gene058013:CDS 50.0%
TTAGGGGCCTGACAGTTACT+TGG + chr4.2:33616311-33616330 MS.gene058013:intron 50.0%
! AAGACTGTGGTATGCTGGCT+CGG - chr4.2:33618240-33618259 None:intergenic 50.0%
! AGAAGCTCGGGAGTGAGTTT+TGG - chr4.2:33615876-33615895 None:intergenic 50.0%
! CCGTGGTATTTGAAGTTGCG+AGG - chr4.2:33615939-33615958 None:intergenic 50.0%
! GGTGGTGTTAGGGTTTGGAT+TGG - chr4.2:33615763-33615782 None:intergenic 50.0%
! GTTTGGATTGGGATTTGGGG+CGG - chr4.2:33615751-33615770 None:intergenic 50.0%
!! ACATTTTGCACGGGCTGAGA+AGG - chr4.2:33618058-33618077 None:intergenic 50.0%
!! CTTTTTGGGCTTTTCGACGG+CGG - chr4.2:33615838-33615857 None:intergenic 50.0%
ACCTCCACCTTCAAACCCTC+TGG + chr4.2:33615804-33615823 MS.gene058013:CDS 55.0%
ACGGCAATTGGGGACAATGG+CGG - chr4.2:33616414-33616433 None:intergenic 55.0%
ATGCTGTCGTCCACAACTGG+TGG - chr4.2:33616895-33616914 None:intergenic 55.0%
GAAGCTCACTGGCCAACCAT+AGG + chr4.2:33617271-33617290 MS.gene058013:intron 55.0%
GAAGGTGGAGGTAGGTGGAT+CGG - chr4.2:33615796-33615815 None:intergenic 55.0%
GAGGGTTTGAAGGTGGAGGT+AGG - chr4.2:33615804-33615823 None:intergenic 55.0%
GGTGGTTCACGCAACTTCGA+TGG - chr4.2:33616877-33616896 None:intergenic 55.0%
GGTTTGAAGGTGGAGGTAGG+TGG - chr4.2:33615801-33615820 None:intergenic 55.0%
GTTGCGTGAACCACCAGTTG+TGG + chr4.2:33616882-33616901 MS.gene058013:CDS 55.0%
TCAGGATCCGGAACAGCAAC+AGG + chr4.2:33615675-33615694 MS.gene058013:CDS 55.0%
TCCAGAGGGTTTGAAGGTGG+AGG - chr4.2:33615808-33615827 None:intergenic 55.0%
TCTGGGTCCAGAGGGTTTGA+AGG - chr4.2:33615814-33615833 None:intergenic 55.0%
TGGGTGGCCAAGTAACTGTC+AGG - chr4.2:33616321-33616340 None:intergenic 55.0%
! ACGGGTACGTGGAGGCTTTT+TGG - chr4.2:33615853-33615872 None:intergenic 55.0%
! CGGGTACGTGGAGGCTTTTT+GGG - chr4.2:33615852-33615871 None:intergenic 55.0%
! GAGGTGGTGGTGTTAGGGTT+TGG - chr4.2:33615768-33615787 None:intergenic 55.0%
! TTGGGATTTGGGGCGGTGAA+AGG - chr4.2:33615744-33615763 None:intergenic 55.0%
!! AGACTGTGGTATGCTGGCTC+GGG - chr4.2:33618239-33618258 None:intergenic 55.0%
!! AGAGGAAGGCGTTCTGGGTA+AGG - chr4.2:33617166-33617185 None:intergenic 55.0%
!! CTTCTCTCTGATGACGGCCT+TGG + chr4.2:33615894-33615913 MS.gene058013:CDS 55.0%
!!! AGTTTTGGACGGGTACGTGG+AGG - chr4.2:33615861-33615880 None:intergenic 55.0%
!!! CTCGGGAGTGAGTTTTGGAC+GGG - chr4.2:33615871-33615890 None:intergenic 55.0%
!!! GCTCGGGAGTGAGTTTTGGA+CGG - chr4.2:33615872-33615891 None:intergenic 55.0%
!!! GTGAGTTTTGGACGGGTACG+TGG - chr4.2:33615864-33615883 None:intergenic 55.0%
AATGCGGCAGACCAGGTCAC+TGG + chr4.2:33615706-33615725 MS.gene058013:CDS 60.0%
AGCAGAGCAGAGAGCCCGTA+TGG + chr4.2:33618177-33618196 MS.gene058013:CDS 60.0%
CTCAGCACTGCTGGACAGAC+TGG - chr4.2:33618152-33618171 None:intergenic 60.0%
GGGATGCTGTCGTCCACAAC+TGG - chr4.2:33616898-33616917 None:intergenic 60.0%
GGGTCCAGAGGGTTTGAAGG+TGG - chr4.2:33615811-33615830 None:intergenic 60.0%
GTGGACGACAGCATCCCAGA+TGG + chr4.2:33616901-33616920 MS.gene058013:CDS 60.0%
! CGGTGGAGGTGGTGGTGTTA+GGG - chr4.2:33615773-33615792 None:intergenic 60.0%
! GGCTTTTCGACGGCGGATCT+GGG - chr4.2:33615831-33615850 None:intergenic 60.0%
ACGGCGGATCTGGGTCCAGA+GGG - chr4.2:33615822-33615841 None:intergenic 65.0%
ATACCACGGTCGCGGCCATG+AGG + chr4.2:33615950-33615969 MS.gene058013:CDS 65.0%
CAGTCGCGTGACCAGTGACC+TGG - chr4.2:33615720-33615739 None:intergenic 65.0%
GGTGGAGGTAGGTGGATCGG+CGG - chr4.2:33615793-33615812 None:intergenic 65.0%
! GCGGTGGAGGTGGTGGTGTT+AGG - chr4.2:33615774-33615793 None:intergenic 65.0%
! GGGCTTTTCGACGGCGGATC+TGG - chr4.2:33615832-33615851 None:intergenic 65.0%
AGGTGGATCGGCGGTGGAGG+TGG - chr4.2:33615784-33615803 None:intergenic 70.0%
CAACCTCATGGCCGCGACCG+TGG - chr4.2:33615956-33615975 None:intergenic 70.0%
GACGGCGGATCTGGGTCCAG+AGG - chr4.2:33615823-33615842 None:intergenic 70.0%
GGAGGTAGGTGGATCGGCGG+TGG - chr4.2:33615790-33615809 None:intergenic 70.0%
GGTAGGTGGATCGGCGGTGG+AGG - chr4.2:33615787-33615806 None:intergenic 70.0%
TGGATCGGCGGTGGAGGTGG+TGG - chr4.2:33615781-33615800 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 33615672 33618264 33615672 ID=MS.gene058013
chr4.2 mRNA 33615672 33618264 33615672 ID=MS.gene058013.t1;Parent=MS.gene058013
chr4.2 exon 33615672 33615971 33615672 ID=MS.gene058013.t1.exon1;Parent=MS.gene058013.t1
chr4.2 CDS 33615672 33615971 33615672 ID=cds.MS.gene058013.t1;Parent=MS.gene058013.t1
chr4.2 exon 33616063 33616185 33616063 ID=MS.gene058013.t1.exon2;Parent=MS.gene058013.t1
chr4.2 CDS 33616063 33616185 33616063 ID=cds.MS.gene058013.t1;Parent=MS.gene058013.t1
chr4.2 exon 33616829 33616931 33616829 ID=MS.gene058013.t1.exon3;Parent=MS.gene058013.t1
chr4.2 CDS 33616829 33616931 33616829 ID=cds.MS.gene058013.t1;Parent=MS.gene058013.t1
chr4.2 exon 33617489 33617595 33617489 ID=MS.gene058013.t1.exon4;Parent=MS.gene058013.t1
chr4.2 CDS 33617489 33617595 33617489 ID=cds.MS.gene058013.t1;Parent=MS.gene058013.t1
chr4.2 exon 33618052 33618264 33618052 ID=MS.gene058013.t1.exon5;Parent=MS.gene058013.t1
chr4.2 CDS 33618052 33618264 33618052 ID=cds.MS.gene058013.t1;Parent=MS.gene058013.t1
Gene Sequence

>MS.gene058013

ATGTCAGGATCCGGAACAGCAACAGGTTGTTACAAATGCGGCAGACCAGGTCACTGGTCACGCGACTGTCCTTTCACCGCCCCAAATCCCAATCCAAACCCTAACACCACCACCTCCACCGCCGATCCACCTACCTCCACCTTCAAACCCTCTGGACCCAGATCCGCCGTCGAAAAGCCCAAAAAGCCTCCACGTACCCGTCCAAAACTCACTCCCGAGCTTCTTCTCTCTGATGACGGCCTTGGTTACGTTCTTCGCTATTTCCCTCGCAACTTCAAATACCACGGTCGCGGCCATGAGGTTGTAATTAATCTCATCCTTTTTCTTAATTAATTGTTAATTCATTTTCGATTAATATTAACCGCAATCACTTAATTGTTTGTTTTGTTAGGTTCGTGATTTGGGTAAGTTGCTTGACTTATACTCTGACTGGCACTCTCGTTTGCTACCGTATTACTCTTTCAATCAATTTGTCAATAAAGTTGAGAAAGTTGCTGCTACTAGGCGTGTTAAGGTTAGTGCTTTCTTCAATGTTGAATTGTACATAATTATTTAAATTTAGCATAATGTTAAAAGTTCAGTGGATTAGTGTTCAGGTGCCAAAATTTTGAGTGTAATTGAAGATGAGTACAAATATGATTAGGGGCCTGACAGTTACTTGGCCACCCATAATAACGAAGCTTAAAAATAAGGACTTTGGCTGCAACTATTCTTTTACGCGTGAGTCAACTCTAGGAGACCGCCATTGTCCCCAATTGCCGTTAGAAGGGATTAACTGTCGGCTATTTGCTTGTTGTAGAAAGTAGTTTCTTGCTGTTGAACATGCATGTTAGTCTCGTGTATGCAAAAAGGATGTGACATTGACTTATTTAATTTATAAACTCAACATCTGTGTTTCCATAACTATTTTCCATCAATCATCTTCAACTAATGCATATTTTTCTTTCAATTGGTACATGCACGATACAAGTATATAAGTGTTCCAATTCCTCTGCTATGTTTTTATGCTTTTATACACTCACATTGATATGATTTGCCATTGCTCTGTATCTCTCTCCCTATGGCTTTATATCTGTTGAAAGAGTGTGTTTGTTGCATACTTGCATGTCCTTGTTCAAACTTTGTGTTTAACATTTATTTTTACGTCCTCTAACCAGACTAGCCTTAGAGAATTAAGAGAAAGAGTTGCAAATGGTGGGGATCCATCGAAGTTGCGTGAACCACCAGTTGTGGACGACAGCATCCCAGATGGTGAACAAGGTAATCTACTATCAATGTATTTGCACTTCGCTATCAAGGTCTCAAACTCAAAATACATTGCTTGCGTTTGAATTAATAGGTATTTTCTTAGATATGTGGTTGTAAACTTAGAGAACAACAACATCCTATAGTAAAGTTAGTCTAGAAACAATTATCAACTCAACAATTTAACAATGTCGACAAGTACCATTTATTGAATTAATCACCTGTTATAAAGTTGTTCAGAAATATCCTTACCCAGAACGCCTTCCTCTTAATTTTCCTTTTTTCAATTGTATGTGAATTTTTAAATGTTAATTGCCAGAGAGATTACAACCAACAATTGACAATTTGATCATTGAAGCTCACTGGCCAACCATAGGTAGACAAAATGAAGGAATACATTGATTTTGGAAAACTTCGAACTGATTCATATTTCAAACAGGGTAGCCAACTGATTCCATATAGTTCACTGGAATATTGCTATAAAGTTCGACCAAAAGAACTAATTAGATTTTATTTATTTTATTAAGTATCTTTGCTAAGTATCCCTATATTGGATTTTGCTGTATCTGCAGAAAATGGGGAAGCAAGTCATCAAGAGAATGAGATGTTTGCAGAACCTGAAACTGTTAACGACATTCAAGAAGATTTGTTCAATGATATATATGATAAAGCTACCGAAGTGAGTTTAATTTCTTTGCTAAGTATCATCATGTAAGAAGATCTATTTGTTTCTTTGTTAAAACACATATGAACATTTTCTTTTGTGAAAGGAAATCTGTTAAAACACTTTTGGTAACGTCTTCATTATATGACCATTCTCACAAATTTGTGAGTAATCTGAATTGTTTGGCAAATGTTTAAGTCAGTCAGATTTAGTTTTTATCCTTATCCAGAAGTGTGTTATTAATGATACAAGGGTAAACATTAATCTCTCAAGACTGTTGTATTCTTTCATTAGAGACTATTTGAACGTCTGGTTTATACTTTTTTTTTCCTTCTTAAGTCTCTAGATTTCTTGTAATTATTCCTTTGTTATGAAGTCAGCATGTAAGATGCCATTATCACTTCTATTTAGTGATAAACCAAATCGTAAACAAGGATCTGATCCTAAGTTTGTAATGCCTTTCTATTGCAGGAACCTTCTCAGCCCGTGCAAAATGTGATTTCTGCGAGTACTGATCCCAAAAGTAGCACAACTGAAAAGACATCAAATGAAGTCCCAAATAATGGAACCAGTCTGTCCAGCAGTGCTGAGATAACAGCAGAGCAGAGAGCCCGTATGGAAGCAAATAGGTTGAAGGCACTAGAAAGGCGTGCAGCCCGAGCCAGCATACCACAGTCTTCCTAG

Protein sequence

>MS.gene058013.t1

MSGSGTATGCYKCGRPGHWSRDCPFTAPNPNPNPNTTTSTADPPTSTFKPSGPRSAVEKPKKPPRTRPKLTPELLLSDDGLGYVLRYFPRNFKYHGRGHEVRDLGKLLDLYSDWHSRLLPYYSFNQFVNKVEKVAATRRVKTSLRELRERVANGGDPSKLREPPVVDDSIPDGEQENGEASHQENEMFAEPETVNDIQEDLFNDIYDKATEEPSQPVQNVISASTDPKSSTTEKTSNEVPNNGTSLSSSAEITAEQRARMEANRLKALERRAARASIPQSS