Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene058013.t1 | XP_024638782.1 | 93.7 | 287 | 11 | 2 | 1 | 281 | 1 | 286 | 1.60E-132 | 482.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene058013.t1 | Q6DBR4 | 31.7 | 120 | 79 | 2 | 57 | 174 | 61 | 179 | 4.7e-08 | 60.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene058013.t1 | A0A396I7L6 | 93.7 | 287 | 11 | 2 | 1 | 281 | 1 | 286 | 1.1e-132 | 482.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene051914 | MS.gene058013 | 0.818302 | 2.10E-52 | -1.69E-46 |
MS.gene052308 | MS.gene058013 | 0.812281 | 4.59E-51 | -1.69E-46 |
MS.gene053173 | MS.gene058013 | 0.804385 | 2.22E-49 | -1.69E-46 |
MS.gene054551 | MS.gene058013 | 0.802038 | 6.78E-49 | -1.69E-46 |
MS.gene054593 | MS.gene058013 | 0.811128 | 8.18E-51 | -1.69E-46 |
MS.gene054633 | MS.gene058013 | 0.812991 | 3.21E-51 | -1.69E-46 |
MS.gene055308 | MS.gene058013 | 0.812349 | 4.43E-51 | -1.69E-46 |
MS.gene055578 | MS.gene058013 | 0.840537 | 8.19E-58 | -1.69E-46 |
MS.gene056041 | MS.gene058013 | 0.836325 | 1.00E-56 | -1.69E-46 |
MS.gene05640 | MS.gene058013 | 0.82514 | 5.51E-54 | -1.69E-46 |
MS.gene056528 | MS.gene058013 | 0.806598 | 7.61E-50 | -1.69E-46 |
MS.gene058013 | MS.gene058128 | 0.837641 | 4.61E-57 | -1.69E-46 |
MS.gene058013 | MS.gene058853 | 0.818704 | 1.71E-52 | -1.69E-46 |
MS.gene058013 | MS.gene06093 | 0.811286 | 7.56E-51 | -1.69E-46 |
MS.gene058013 | MS.gene061260 | 0.800321 | 1.52E-48 | -1.69E-46 |
MS.gene058013 | MS.gene063308 | 0.817005 | 4.13E-52 | -1.69E-46 |
MS.gene058013 | MS.gene064834 | 0.812165 | 4.86E-51 | -1.69E-46 |
MS.gene058013 | MS.gene066026 | 0.8301 | 3.55E-55 | -1.69E-46 |
MS.gene058013 | MS.gene068197 | 0.808476 | 3.04E-50 | -1.69E-46 |
MS.gene058013 | MS.gene07051 | 0.801556 | 8.52E-49 | -1.69E-46 |
MS.gene058013 | MS.gene070800 | 0.869706 | 2.53E-66 | -1.69E-46 |
MS.gene058013 | MS.gene07616 | 0.832109 | 1.14E-55 | -1.69E-46 |
MS.gene058013 | MS.gene09806 | 0.809206 | 2.12E-50 | -1.69E-46 |
MS.gene058013 | MS.gene20224 | 0.818112 | 2.32E-52 | -1.69E-46 |
MS.gene058013 | MS.gene20231 | 0.805311 | 1.42E-49 | -1.69E-46 |
MS.gene058013 | MS.gene21734 | 0.829656 | 4.56E-55 | -1.69E-46 |
MS.gene058013 | MS.gene21888 | 0.833863 | 4.18E-56 | -1.69E-46 |
MS.gene058013 | MS.gene22466 | 0.821715 | 3.48E-53 | -1.69E-46 |
MS.gene058013 | MS.gene22500 | 0.801497 | 8.76E-49 | -1.69E-46 |
MS.gene058013 | MS.gene23050 | 0.805267 | 1.45E-49 | -1.69E-46 |
MS.gene058013 | MS.gene23886 | 0.857016 | 2.18E-62 | -1.69E-46 |
MS.gene058013 | MS.gene26406 | 0.849707 | 2.72E-60 | -1.69E-46 |
MS.gene058013 | MS.gene27811 | 0.820389 | 7.04E-53 | -1.69E-46 |
MS.gene058013 | MS.gene27812 | 0.824909 | 6.25E-54 | -1.69E-46 |
MS.gene058013 | MS.gene28452 | 0.801448 | 8.96E-49 | -1.69E-46 |
MS.gene058013 | MS.gene28867 | 0.808227 | 3.43E-50 | -1.69E-46 |
MS.gene058013 | MS.gene28923 | 0.814205 | 1.73E-51 | -1.69E-46 |
MS.gene058013 | MS.gene34503 | 0.820802 | 5.66E-53 | -1.69E-46 |
MS.gene058013 | MS.gene34573 | 0.821413 | 4.09E-53 | -1.69E-46 |
MS.gene058013 | MS.gene37495 | 0.811903 | 5.55E-51 | -1.69E-46 |
MS.gene058013 | MS.gene37925 | 0.807235 | 5.58E-50 | -1.69E-46 |
MS.gene058013 | MS.gene38724 | 0.813982 | 1.94E-51 | -1.69E-46 |
MS.gene058013 | MS.gene39469 | 0.800595 | 1.34E-48 | -1.69E-46 |
MS.gene058013 | MS.gene39538 | 0.807518 | 4.86E-50 | -1.69E-46 |
MS.gene058013 | MS.gene40241 | 0.847619 | 1.03E-59 | -1.69E-46 |
MS.gene058013 | MS.gene40329 | 0.815851 | 7.48E-52 | -1.69E-46 |
MS.gene058013 | MS.gene40405 | 0.833556 | 4.98E-56 | -1.69E-46 |
MS.gene058013 | MS.gene40689 | 0.822584 | 2.19E-53 | -1.69E-46 |
MS.gene058013 | MS.gene42750 | 0.807134 | 5.86E-50 | -1.69E-46 |
MS.gene058013 | MS.gene44100 | 0.834068 | 3.71E-56 | -1.69E-46 |
MS.gene058013 | MS.gene47007 | 0.807953 | 3.93E-50 | -1.69E-46 |
MS.gene058013 | MS.gene48492 | 0.81507 | 1.12E-51 | -1.69E-46 |
MS.gene058013 | MS.gene49312 | 0.823585 | 1.28E-53 | -1.69E-46 |
MS.gene058013 | MS.gene50484 | 0.820701 | 5.97E-53 | -1.69E-46 |
MS.gene058013 | MS.gene51554 | 0.820635 | 6.18E-53 | -1.69E-46 |
MS.gene058013 | MS.gene52403 | 0.83496 | 2.21E-56 | -1.69E-46 |
MS.gene058013 | MS.gene52624 | 0.808362 | 3.21E-50 | -1.69E-46 |
MS.gene058013 | MS.gene52772 | 0.809197 | 2.13E-50 | -1.69E-46 |
MS.gene058013 | MS.gene52980 | 0.849742 | 2.66E-60 | -1.69E-46 |
MS.gene058013 | MS.gene53408 | 0.829656 | 4.56E-55 | -1.69E-46 |
MS.gene058013 | MS.gene57751 | 0.85677 | 2.57E-62 | -1.69E-46 |
MS.gene058013 | MS.gene58114 | 0.804858 | 1.77E-49 | -1.69E-46 |
MS.gene058013 | MS.gene58234 | 0.853647 | 2.08E-61 | -1.69E-46 |
MS.gene058013 | MS.gene58285 | 0.801466 | 8.89E-49 | -1.69E-46 |
MS.gene058013 | MS.gene58754 | 0.839992 | 1.14E-57 | -1.69E-46 |
MS.gene058013 | MS.gene58835 | 0.829073 | 6.31E-55 | -1.69E-46 |
MS.gene058013 | MS.gene60269 | 0.814338 | 1.62E-51 | -1.69E-46 |
MS.gene058013 | MS.gene61094 | 0.803675 | 3.11E-49 | -1.69E-46 |
MS.gene058013 | MS.gene61107 | 0.818631 | 1.77E-52 | -1.69E-46 |
MS.gene058013 | MS.gene61618 | 0.842701 | 2.20E-58 | -1.69E-46 |
MS.gene058013 | MS.gene61684 | 0.816923 | 4.30E-52 | -1.69E-46 |
MS.gene058013 | MS.gene63469 | 0.826391 | 2.78E-54 | -1.69E-46 |
MS.gene058013 | MS.gene65301 | 0.816543 | 5.24E-52 | -1.69E-46 |
MS.gene058013 | MS.gene65431 | 0.807302 | 5.40E-50 | -1.69E-46 |
MS.gene058013 | MS.gene66615 | 0.819071 | 1.41E-52 | -1.69E-46 |
MS.gene058013 | MS.gene67555 | 0.805991 | 1.02E-49 | -1.69E-46 |
MS.gene058013 | MS.gene69328 | 0.81349 | 2.49E-51 | -1.69E-46 |
MS.gene058013 | MS.gene69722 | 0.820337 | 7.24E-53 | -1.69E-46 |
MS.gene058013 | MS.gene70263 | 0.844562 | 7.00E-59 | -1.69E-46 |
MS.gene058013 | MS.gene70494 | 0.805196 | 1.50E-49 | -1.69E-46 |
MS.gene058013 | MS.gene71431 | 0.809084 | 2.25E-50 | -1.69E-46 |
MS.gene058013 | MS.gene75318 | 0.812146 | 4.91E-51 | -1.69E-46 |
MS.gene058013 | MS.gene75320 | 0.800603 | 1.33E-48 | -1.69E-46 |
MS.gene058013 | MS.gene75642 | 0.819721 | 1.00E-52 | -1.69E-46 |
MS.gene058013 | MS.gene77563 | 0.81804 | 2.41E-52 | -1.69E-46 |
MS.gene058013 | MS.gene78224 | 0.816187 | 6.29E-52 | -1.69E-46 |
MS.gene058013 | MS.gene79251 | 0.822607 | 2.16E-53 | -1.69E-46 |
MS.gene058013 | MS.gene79921 | 0.835522 | 1.60E-56 | -1.69E-46 |
MS.gene058013 | MS.gene89653 | 0.829763 | 4.29E-55 | -1.69E-46 |
MS.gene058013 | MS.gene90302 | 0.815082 | 1.11E-51 | -1.69E-46 |
MS.gene058013 | MS.gene91412 | 0.81232 | 4.50E-51 | -1.69E-46 |
MS.gene058013 | MS.gene91551 | 0.806273 | 8.91E-50 | -1.69E-46 |
MS.gene058013 | MS.gene92313 | 0.803396 | 3.56E-49 | -1.69E-46 |
MS.gene058013 | MS.gene93762 | 0.816158 | 6.39E-52 | -1.69E-46 |
MS.gene058013 | MS.gene93854 | 0.800204 | 1.61E-48 | -1.69E-46 |
MS.gene058013 | MS.gene97701 | 0.826235 | 3.03E-54 | -1.69E-46 |
MS.gene058013 | MS.gene99337 | 0.800279 | 1.55E-48 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene058013.t1 | AT3G02820 | 48.375 | 277 | 127 | 7 | 8 | 274 | 6 | 276 | 9.65e-79 | 240 |
MS.gene058013.t1 | AT3G02820 | 48.375 | 277 | 127 | 7 | 8 | 274 | 23 | 293 | 1.74e-78 | 240 |
Find 79 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GACAGACTGGTTCCATTATT+TGG | 0.093724 | 4.2:-33618136 | None:intergenic |
TAGGGTTTGGATTGGGATTT+GGG | 0.153645 | 4.2:-33615752 | None:intergenic |
TGAATGTCGTTAACAGTTTC+AGG | 0.178272 | 4.2:-33617533 | None:intergenic |
GCGGTGGAGGTGGTGGTGTT+AGG | 0.206154 | 4.2:-33615771 | None:intergenic |
CTCTTTCTCTTAATTCTCTA+AGG | 0.235487 | 4.2:-33616834 | None:intergenic |
TTAGGGTTTGGATTGGGATT+TGG | 0.242699 | 4.2:-33615753 | None:intergenic |
GAGGTGGTGGTGTTAGGGTT+TGG | 0.285661 | 4.2:-33615765 | None:intergenic |
GTAACAACCTGTTGCTGTTC+CGG | 0.287274 | 4.2:-33615682 | None:intergenic |
AGAAGCTCGGGAGTGAGTTT+TGG | 0.293857 | 4.2:-33615873 | None:intergenic |
TCAAATGAAGTCCCAAATAA+TGG | 0.319473 | 4.2:+33618124 | MS.gene058013:CDS |
AGGTGGATCGGCGGTGGAGG+TGG | 0.322815 | 4.2:-33615781 | None:intergenic |
CTTCTCTCTGATGACGGCCT+TGG | 0.344424 | 4.2:+33615894 | MS.gene058013:CDS |
GTGGTGTTAGGGTTTGGATT+GGG | 0.352807 | 4.2:-33615759 | None:intergenic |
ACAGACTGGTTCCATTATTT+GGG | 0.352932 | 4.2:-33618135 | None:intergenic |
CGGTGGAGGTGGTGGTGTTA+GGG | 0.379415 | 4.2:-33615770 | None:intergenic |
TGCTGTTATCTCAGCACTGC+TGG | 0.389855 | 4.2:-33618158 | None:intergenic |
GGAGGTAGGTGGATCGGCGG+TGG | 0.391333 | 4.2:-33615787 | None:intergenic |
TTGCTGTATCTGCAGAAAAT+GGG | 0.395630 | 4.2:+33617474 | MS.gene058013:intron |
AGATTACCTTGTTCACCATC+TGG | 0.397013 | 4.2:-33616916 | None:intergenic |
GGTAGGTGGATCGGCGGTGG+AGG | 0.397936 | 4.2:-33615784 | None:intergenic |
TGCTGCTACTAGGCGTGTTA+AGG | 0.413675 | 4.2:+33616164 | MS.gene058013:CDS |
TGGATCGGCGGTGGAGGTGG+TGG | 0.423688 | 4.2:-33615778 | None:intergenic |
TCAGGATCCGGAACAGCAAC+AGG | 0.431444 | 4.2:+33615675 | MS.gene058013:CDS |
AAGACTGTGGTATGCTGGCT+CGG | 0.435771 | 4.2:-33618237 | None:intergenic |
GGTGGTGTTAGGGTTTGGAT+TGG | 0.441623 | 4.2:-33615760 | None:intergenic |
TCAACCTATTTGCTTCCATA+CGG | 0.452181 | 4.2:-33618192 | None:intergenic |
GAGCCCGTATGGAAGCAAAT+AGG | 0.454008 | 4.2:+33618188 | MS.gene058013:CDS |
CTCAGCACTGCTGGACAGAC+TGG | 0.455206 | 4.2:-33618149 | None:intergenic |
GGGATGCTGTCGTCCACAAC+TGG | 0.457982 | 4.2:-33616895 | None:intergenic |
CTAGGAAGACTGTGGTATGC+TGG | 0.471259 | 4.2:-33618242 | None:intergenic |
GAAGAGAAAATGTCAGGATC+CGG | 0.473828 | 4.2:+33615663 | None:intergenic |
ACCTCCACCTTCAAACCCTC+TGG | 0.474558 | 4.2:+33615804 | MS.gene058013:CDS |
AGAAGAGAAGAGAAAATGTC+AGG | 0.483482 | 4.2:+33615657 | None:intergenic |
CAACCTATTTGCTTCCATAC+GGG | 0.491149 | 4.2:-33618191 | None:intergenic |
AGCAGAGCAGAGAGCCCGTA+TGG | 0.494494 | 4.2:+33618177 | MS.gene058013:CDS |
TCTGGGTCCAGAGGGTTTGA+AGG | 0.495023 | 4.2:-33615811 | None:intergenic |
TTGGGATTTGGGGCGGTGAA+AGG | 0.495060 | 4.2:-33615741 | None:intergenic |
TTAAGAGAAAGAGTTGCAAA+TGG | 0.496853 | 4.2:+33616844 | MS.gene058013:CDS |
GTTTGGATTGGGATTTGGGG+CGG | 0.497587 | 4.2:-33615748 | None:intergenic |
TTGAGAAAGTTGCTGCTACT+AGG | 0.498945 | 4.2:+33616154 | MS.gene058013:CDS |
TCATCAGAGAGAAGAAGCTC+GGG | 0.503800 | 4.2:-33615885 | None:intergenic |
GTCATCAGAGAGAAGAAGCT+CGG | 0.508978 | 4.2:-33615886 | None:intergenic |
GATTACCTTGTTCACCATCT+GGG | 0.514063 | 4.2:-33616915 | None:intergenic |
TGTTACAAATGCGGCAGACC+AGG | 0.517761 | 4.2:+33615699 | MS.gene058013:CDS |
AGGGTTTGGATTGGGATTTG+GGG | 0.518659 | 4.2:-33615751 | None:intergenic |
GGTTTGAAGGTGGAGGTAGG+TGG | 0.525605 | 4.2:-33615798 | None:intergenic |
GAGAAAGAGTTGCAAATGGT+GGG | 0.533112 | 4.2:+33616848 | MS.gene058013:CDS |
GAAGGTGGAGGTAGGTGGAT+CGG | 0.539108 | 4.2:-33615793 | None:intergenic |
AGAGAAAGAGTTGCAAATGG+TGG | 0.541281 | 4.2:+33616847 | MS.gene058013:CDS |
TATGGAAGCAAATAGGTTGA+AGG | 0.541904 | 4.2:+33618195 | MS.gene058013:CDS |
TGCTTGACTTATACTCTGAC+TGG | 0.544504 | 4.2:+33616082 | MS.gene058013:CDS |
ATAGGTTGAAGGCACTAGAA+AGG | 0.545276 | 4.2:+33618206 | MS.gene058013:CDS |
AACTTCAAATACCACGGTCG+CGG | 0.560735 | 4.2:+33615942 | MS.gene058013:CDS |
CCGTGGTATTTGAAGTTGCG+AGG | 0.565970 | 4.2:-33615936 | None:intergenic |
TGCTGTATCTGCAGAAAATG+GGG | 0.567337 | 4.2:+33617475 | MS.gene058013:intron |
CAGTCGCGTGACCAGTGACC+TGG | 0.568375 | 4.2:-33615717 | None:intergenic |
GGTGGTTCACGCAACTTCGA+TGG | 0.570994 | 4.2:-33616874 | None:intergenic |
AGACTGTGGTATGCTGGCTC+GGG | 0.572569 | 4.2:-33618236 | None:intergenic |
GGGTCCAGAGGGTTTGAAGG+TGG | 0.574431 | 4.2:-33615808 | None:intergenic |
TCCAGAGGGTTTGAAGGTGG+AGG | 0.577332 | 4.2:-33615805 | None:intergenic |
AATTGATTGAAAGAGTAATA+CGG | 0.577716 | 4.2:-33616120 | None:intergenic |
AATGCGGCAGACCAGGTCAC+TGG | 0.581408 | 4.2:+33615706 | MS.gene058013:CDS |
CAACCTCATGGCCGCGACCG+TGG | 0.581868 | 4.2:-33615953 | None:intergenic |
GACGGCGGATCTGGGTCCAG+AGG | 0.589738 | 4.2:-33615820 | None:intergenic |
AGCATCCCAGATGGTGAACA+AGG | 0.590534 | 4.2:+33616910 | MS.gene058013:CDS |
CGTGGTATTTGAAGTTGCGA+GGG | 0.591626 | 4.2:-33615935 | None:intergenic |
GAGGGTTTGAAGGTGGAGGT+AGG | 0.595710 | 4.2:-33615801 | None:intergenic |
ACGGCGGATCTGGGTCCAGA+GGG | 0.600152 | 4.2:-33615819 | None:intergenic |
GAGCTTCTTCTCTCTGATGA+CGG | 0.601771 | 4.2:+33615888 | MS.gene058013:CDS |
GGTGGAGGTAGGTGGATCGG+CGG | 0.604040 | 4.2:-33615790 | None:intergenic |
GTTGCGTGAACCACCAGTTG+TGG | 0.626399 | 4.2:+33616882 | MS.gene058013:CDS |
AGAAAGAGTTGCAAATGGTG+GGG | 0.639503 | 4.2:+33616849 | MS.gene058013:CDS |
ATACCACGGTCGCGGCCATG+AGG | 0.648998 | 4.2:+33615950 | MS.gene058013:CDS |
ATGCTGTCGTCCACAACTGG+TGG | 0.670186 | 4.2:-33616892 | None:intergenic |
GTGGACGACAGCATCCCAGA+TGG | 0.678430 | 4.2:+33616901 | MS.gene058013:CDS |
CCTCGCAACTTCAAATACCA+CGG | 0.686072 | 4.2:+33615936 | MS.gene058013:CDS |
GCAACAGGTTGTTACAAATG+CGG | 0.691238 | 4.2:+33615690 | MS.gene058013:CDS |
AATAGCGAAGAACGTAACCA+AGG | 0.694872 | 4.2:-33615911 | None:intergenic |
TATCAAAGCTAGGAAGACTG+TGG | 0.695853 | 4.2:-33618250 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTAACAATTAATTAAGAAAA+AGG | - | chr4.2:33615992-33616011 | None:intergenic | 10.0% |
!!! | TAAAATCTAATTAGTTCTTT+TGG | - | chr4.2:33617410-33617429 | None:intergenic | 15.0% |
!! | AATAACGAAGCTTAAAAATA+AGG | + | chr4.2:33616342-33616361 | MS.gene058013:intron | 20.0% |
!! | AATTGATTGAAAGAGTAATA+CGG | - | chr4.2:33616123-33616142 | None:intergenic | 20.0% |
!! | ATTCACATACAATTGAAAAA+AGG | - | chr4.2:33617196-33617215 | None:intergenic | 20.0% |
!! | TTGAAAAAAGGAAAATTAAG+AGG | - | chr4.2:33617184-33617203 | None:intergenic | 20.0% |
!!! | ACTTAATTGTTTGTTTTGTT+AGG | + | chr4.2:33616041-33616060 | MS.gene058013:intron | 20.0% |
!!! | ATGCATATTTTTCTTTCAAT+TGG | + | chr4.2:33616602-33616621 | MS.gene058013:intron | 20.0% |
!!! | ATTTTTAAGCTTCGTTATTA+TGG | - | chr4.2:33616341-33616360 | None:intergenic | 20.0% |
!!! | TTCAATTACACTCAAAATTT+TGG | - | chr4.2:33616274-33616293 | None:intergenic | 20.0% |
!!! | TTTTTAAGCTTCGTTATTAT+GGG | - | chr4.2:33616340-33616359 | None:intergenic | 20.0% |
! | AAAAAGGAAAATTAAGAGGA+AGG | - | chr4.2:33617180-33617199 | None:intergenic | 25.0% |
! | AACAAACAATTAAGTGATTG+CGG | - | chr4.2:33616036-33616055 | None:intergenic | 25.0% |
! | AAGCTTAAAAATAAGGACTT+TGG | + | chr4.2:33616349-33616368 | MS.gene058013:intron | 25.0% |
! | AGATGAGTACAAATATGATT+AGG | + | chr4.2:33616293-33616312 | MS.gene058013:intron | 25.0% |
! | ATACAGCAAAATCCAATATA+GGG | - | chr4.2:33617463-33617482 | None:intergenic | 25.0% |
! | ATGAGTACAAATATGATTAG+GGG | + | chr4.2:33616295-33616314 | MS.gene058013:intron | 25.0% |
! | ATGATCAAATTGTCAATTGT+TGG | - | chr4.2:33617250-33617269 | None:intergenic | 25.0% |
! | CAAAGAAATTAAACTCACTT+CGG | - | chr4.2:33617594-33617613 | None:intergenic | 25.0% |
! | CAGGTGATTAATTCAATAAA+TGG | - | chr4.2:33617121-33617140 | None:intergenic | 25.0% |
! | GATGAGTACAAATATGATTA+GGG | + | chr4.2:33616294-33616313 | MS.gene058013:intron | 25.0% |
! | TATCATTAATAACACACTTC+TGG | - | chr4.2:33617809-33617828 | None:intergenic | 25.0% |
! | TCACTAAATAGAAGTGATAA+TGG | - | chr4.2:33617975-33617994 | None:intergenic | 25.0% |
! | TGATTGATGGAAAATAGTTA+TGG | - | chr4.2:33616572-33616591 | None:intergenic | 25.0% |
! | TTAAACACAAAGTTTGAACA+AGG | - | chr4.2:33616783-33616802 | None:intergenic | 25.0% |
! | TTCTAGACTAACTTTACTAT+AGG | - | chr4.2:33617059-33617078 | None:intergenic | 25.0% |
! | TTTCTGAACAACTTTATAAC+AGG | - | chr4.2:33617140-33617159 | None:intergenic | 25.0% |
!! | AACTGATTCATATTTCAAAC+AGG | + | chr4.2:33617334-33617353 | MS.gene058013:intron | 25.0% |
!! | ACTGATTCATATTTCAAACA+GGG | + | chr4.2:33617335-33617354 | MS.gene058013:intron | 25.0% |
!! | AGTGTGTTATTAATGATACA+AGG | + | chr4.2:33617811-33617830 | MS.gene058013:intron | 25.0% |
!! | GAAATCTGTTAAAACACTTT+TGG | + | chr4.2:33617687-33617706 | MS.gene058013:intron | 25.0% |
!! | GTGTGTTATTAATGATACAA+GGG | + | chr4.2:33617812-33617831 | MS.gene058013:intron | 25.0% |
!! | TAGGTATTTTCTTAGATATG+TGG | + | chr4.2:33617008-33617027 | MS.gene058013:intron | 25.0% |
!! | TGAACATTTTCTTTTGTGAA+AGG | + | chr4.2:33617665-33617684 | MS.gene058013:intron | 25.0% |
!!! | ATGAAGGAATACATTGATTT+TGG | + | chr4.2:33617302-33617321 | MS.gene058013:intron | 25.0% |
AAAGCATAAAAACATAGCAG+AGG | - | chr4.2:33616663-33616682 | None:intergenic | 30.0% | |
AGAAATCTAGAGACTTAAGA+AGG | - | chr4.2:33617913-33617932 | None:intergenic | 30.0% | |
CAATATTCCAGTGAACTATA+TGG | - | chr4.2:33617374-33617393 | None:intergenic | 30.0% | |
CATTAGTTGAAGATGATTGA+TGG | - | chr4.2:33616585-33616604 | None:intergenic | 30.0% | |
CTCTTTCTCTTAATTCTCTA+AGG | - | chr4.2:33616837-33616856 | None:intergenic | 30.0% | |
GATAAACCAAATCGTAAACA+AGG | + | chr4.2:33617993-33618012 | MS.gene058013:intron | 30.0% | |
GATACAGCAAAATCCAATAT+AGG | - | chr4.2:33617464-33617483 | None:intergenic | 30.0% | |
GCATAATGTTAAAAGTTCAG+TGG | + | chr4.2:33616233-33616252 | MS.gene058013:intron | 30.0% | |
TAAAAACATAGCAGAGGAAT+TGG | - | chr4.2:33616657-33616676 | None:intergenic | 30.0% | |
TAATAACACACTTCTGGATA+AGG | - | chr4.2:33617803-33617822 | None:intergenic | 30.0% | |
TACTCACAAATTTGTGAGAA+TGG | - | chr4.2:33617732-33617751 | None:intergenic | 30.0% | |
TCAAATGAAGTCCCAAATAA+TGG | + | chr4.2:33618124-33618143 | MS.gene058013:CDS | 30.0% | |
TCAACAGATATAAAGCCATA+GGG | - | chr4.2:33616731-33616750 | None:intergenic | 30.0% | |
TGAGATTAATTACAACCTCA+TGG | - | chr4.2:33615968-33615987 | None:intergenic | 30.0% | |
TGTGAGTAATCTGAATTGTT+TGG | + | chr4.2:33617744-33617763 | MS.gene058013:intron | 30.0% | |
TTAAGAGAAAGAGTTGCAAA+TGG | + | chr4.2:33616844-33616863 | MS.gene058013:CDS | 30.0% | |
TTCAACAGATATAAAGCCAT+AGG | - | chr4.2:33616732-33616751 | None:intergenic | 30.0% | |
TTGCTTGCGTTTGAATTAAT+AGG | + | chr4.2:33616989-33617008 | MS.gene058013:intron | 30.0% | |
TTTGCTAAGTATCCCTATAT+TGG | + | chr4.2:33617448-33617467 | MS.gene058013:intron | 30.0% | |
! | TTTTGTTAGGTTCGTGATTT+GGG | + | chr4.2:33616054-33616073 | MS.gene058013:intron | 30.0% |
!! | TAGAAAGGCATTACAAACTT+AGG | - | chr4.2:33618026-33618045 | None:intergenic | 30.0% |
!!! | TTTTCAGTTGTGCTACTTTT+GGG | - | chr4.2:33618100-33618119 | None:intergenic | 30.0% |
ACCATAGGTAGACAAAATGA+AGG | + | chr4.2:33617286-33617305 | MS.gene058013:intron | 35.0% | |
ATTTGATCATTGAAGCTCAC+TGG | + | chr4.2:33617260-33617279 | MS.gene058013:intron | 35.0% | |
GTGAACTATATGGAATCAGT+TGG | - | chr4.2:33617364-33617383 | None:intergenic | 35.0% | |
TCAACCTATTTGCTTCCATA+CGG | - | chr4.2:33618195-33618214 | None:intergenic | 35.0% | |
TGAATGTCGTTAACAGTTTC+AGG | - | chr4.2:33617536-33617555 | None:intergenic | 35.0% | |
TTAAGCTTCGTTATTATGGG+TGG | - | chr4.2:33616337-33616356 | None:intergenic | 35.0% | |
TTAGAGACTATTTGAACGTC+TGG | + | chr4.2:33617871-33617890 | MS.gene058013:intron | 35.0% | |
TTAGTCTCGTGTATGCAAAA+AGG | + | chr4.2:33616501-33616520 | MS.gene058013:intron | 35.0% | |
TTGCTGTATCTGCAGAAAAT+GGG | + | chr4.2:33617474-33617493 | MS.gene058013:intron | 35.0% | |
TTGTAATGCCTTTCTATTGC+AGG | + | chr4.2:33618030-33618049 | MS.gene058013:intron | 35.0% | |
! | ACAGACTGGTTCCATTATTT+GGG | - | chr4.2:33618138-33618157 | None:intergenic | 35.0% |
! | ACTGATTCCATATAGTTCAC+TGG | + | chr4.2:33617364-33617383 | MS.gene058013:intron | 35.0% |
! | ATTGTTGGTTGTAATCTCTC+TGG | - | chr4.2:33617235-33617254 | None:intergenic | 35.0% |
! | TATGGAAGCAAATAGGTTGA+AGG | + | chr4.2:33618195-33618214 | MS.gene058013:CDS | 35.0% |
! | TCAGATCCTTGTTTACGATT+TGG | - | chr4.2:33618002-33618021 | None:intergenic | 35.0% |
! | TCATTTTGTCTACCTATGGT+TGG | - | chr4.2:33617286-33617305 | None:intergenic | 35.0% |
! | TCCTTCATTTTGTCTACCTA+TGG | - | chr4.2:33617290-33617309 | None:intergenic | 35.0% |
! | TTTGCTGTATCTGCAGAAAA+TGG | + | chr4.2:33617473-33617492 | MS.gene058013:intron | 35.0% |
!! | ACATGCTGACTTCATAACAA+AGG | - | chr4.2:33617946-33617965 | None:intergenic | 35.0% |
!! | GTTTTGTTAGGTTCGTGATT+TGG | + | chr4.2:33616053-33616072 | MS.gene058013:intron | 35.0% |
!! | TTAATTCTCTAAGGCTAGTC+TGG | - | chr4.2:33616828-33616847 | None:intergenic | 35.0% |
!!! | CTTTTCAGTTGTGCTACTTT+TGG | - | chr4.2:33618101-33618120 | None:intergenic | 35.0% |
AATAGCGAAGAACGTAACCA+AGG | - | chr4.2:33615914-33615933 | None:intergenic | 40.0% | |
AATCCCTTCTAACGGCAATT+GGG | - | chr4.2:33616425-33616444 | None:intergenic | 40.0% | |
AGAAAGAGTTGCAAATGGTG+GGG | + | chr4.2:33616849-33616868 | MS.gene058013:CDS | 40.0% | |
AGAAGGTTCCTGCAATAGAA+AGG | - | chr4.2:33618041-33618060 | None:intergenic | 40.0% | |
AGAGAAAGAGTTGCAAATGG+TGG | + | chr4.2:33616847-33616866 | MS.gene058013:CDS | 40.0% | |
AGATTACCTTGTTCACCATC+TGG | - | chr4.2:33616919-33616938 | None:intergenic | 40.0% | |
CAACCTATTTGCTTCCATAC+GGG | - | chr4.2:33618194-33618213 | None:intergenic | 40.0% | |
CGACAGTTAATCCCTTCTAA+CGG | - | chr4.2:33616433-33616452 | None:intergenic | 40.0% | |
CGTTAGAAGGGATTAACTGT+CGG | + | chr4.2:33616431-33616450 | MS.gene058013:intron | 40.0% | |
GAGAAAGAGTTGCAAATGGT+GGG | + | chr4.2:33616848-33616867 | MS.gene058013:CDS | 40.0% | |
GATTACCTTGTTCACCATCT+GGG | - | chr4.2:33616918-33616937 | None:intergenic | 40.0% | |
GCAACAGGTTGTTACAAATG+CGG | + | chr4.2:33615690-33615709 | MS.gene058013:CDS | 40.0% | |
GTATTTGCACTTCGCTATCA+AGG | + | chr4.2:33616948-33616967 | MS.gene058013:intron | 40.0% | |
TAATCCCTTCTAACGGCAAT+TGG | - | chr4.2:33616426-33616445 | None:intergenic | 40.0% | |
TGCTGTATCTGCAGAAAATG+GGG | + | chr4.2:33617475-33617494 | MS.gene058013:intron | 40.0% | |
TGCTTGACTTATACTCTGAC+TGG | + | chr4.2:33616082-33616101 | MS.gene058013:CDS | 40.0% | |
TTGAGAAAGTTGCTGCTACT+AGG | + | chr4.2:33616154-33616173 | MS.gene058013:CDS | 40.0% | |
! | CGCAGAAATCACATTTTGCA+CGG | - | chr4.2:33618068-33618087 | None:intergenic | 40.0% |
! | GACAGACTGGTTCCATTATT+TGG | - | chr4.2:33618139-33618158 | None:intergenic | 40.0% |
! | GCAGAAATCACATTTTGCAC+GGG | - | chr4.2:33618067-33618086 | None:intergenic | 40.0% |
! | TAGGGTTTGGATTGGGATTT+GGG | - | chr4.2:33615755-33615774 | None:intergenic | 40.0% |
! | TTAGGGTTTGGATTGGGATT+TGG | - | chr4.2:33615756-33615775 | None:intergenic | 40.0% |
!! | AAATTAAGAGGAAGGCGTTC+TGG | - | chr4.2:33617172-33617191 | None:intergenic | 40.0% |
!! | AATTAAGAGGAAGGCGTTCT+GGG | - | chr4.2:33617171-33617190 | None:intergenic | 40.0% |
!! | AGTTCAGTGGATTAGTGTTC+AGG | + | chr4.2:33616246-33616265 | MS.gene058013:intron | 40.0% |
!! | ATAGGTTGAAGGCACTAGAA+AGG | + | chr4.2:33618206-33618225 | MS.gene058013:CDS | 40.0% |
AACTTCAAATACCACGGTCG+CGG | + | chr4.2:33615942-33615961 | MS.gene058013:CDS | 45.0% | |
ATCCCTTCTAACGGCAATTG+GGG | - | chr4.2:33616424-33616443 | None:intergenic | 45.0% | |
CCTCGCAACTTCAAATACCA+CGG | + | chr4.2:33615936-33615955 | MS.gene058013:CDS | 45.0% | |
GAGCTTCTTCTCTCTGATGA+CGG | + | chr4.2:33615888-33615907 | MS.gene058013:CDS | 45.0% | |
GTCATCAGAGAGAAGAAGCT+CGG | - | chr4.2:33615889-33615908 | None:intergenic | 45.0% | |
TCATCAGAGAGAAGAAGCTC+GGG | - | chr4.2:33615888-33615907 | None:intergenic | 45.0% | |
TTTACGCGTGAGTCAACTCT+AGG | + | chr4.2:33616385-33616404 | MS.gene058013:intron | 45.0% | |
! | AGGGTTTGGATTGGGATTTG+GGG | - | chr4.2:33615754-33615773 | None:intergenic | 45.0% |
! | CGTGGTATTTGAAGTTGCGA+GGG | - | chr4.2:33615938-33615957 | None:intergenic | 45.0% |
! | GTAACAACCTGTTGCTGTTC+CGG | - | chr4.2:33615685-33615704 | None:intergenic | 45.0% |
! | GTGGTGTTAGGGTTTGGATT+GGG | - | chr4.2:33615762-33615781 | None:intergenic | 45.0% |
!! | AGGCTTTTTGGGCTTTTCGA+CGG | - | chr4.2:33615841-33615860 | None:intergenic | 45.0% |
!! | TCTAAGGCTAGTCTGGTTAG+AGG | - | chr4.2:33616821-33616840 | None:intergenic | 45.0% |
AGCATCCCAGATGGTGAACA+AGG | + | chr4.2:33616910-33616929 | MS.gene058013:CDS | 50.0% | |
CTAACGGCAATTGGGGACAA+TGG | - | chr4.2:33616417-33616436 | None:intergenic | 50.0% | |
CTAGGAAGACTGTGGTATGC+TGG | - | chr4.2:33618245-33618264 | None:intergenic | 50.0% | |
GAGCCCGTATGGAAGCAAAT+AGG | + | chr4.2:33618188-33618207 | MS.gene058013:CDS | 50.0% | |
GCTCTGTATCTCTCTCCCTA+TGG | + | chr4.2:33616713-33616732 | MS.gene058013:intron | 50.0% | |
GGGAGAGAGATACAGAGCAA+TGG | - | chr4.2:33616711-33616730 | None:intergenic | 50.0% | |
GTCCCCAATTGCCGTTAGAA+GGG | + | chr4.2:33616419-33616438 | MS.gene058013:intron | 50.0% | |
TGCTGCTACTAGGCGTGTTA+AGG | + | chr4.2:33616164-33616183 | MS.gene058013:CDS | 50.0% | |
TGCTGTTATCTCAGCACTGC+TGG | - | chr4.2:33618161-33618180 | None:intergenic | 50.0% | |
TGTCCCCAATTGCCGTTAGA+AGG | + | chr4.2:33616418-33616437 | MS.gene058013:intron | 50.0% | |
TGTTACAAATGCGGCAGACC+AGG | + | chr4.2:33615699-33615718 | MS.gene058013:CDS | 50.0% | |
TTAGGGGCCTGACAGTTACT+TGG | + | chr4.2:33616311-33616330 | MS.gene058013:intron | 50.0% | |
! | AAGACTGTGGTATGCTGGCT+CGG | - | chr4.2:33618240-33618259 | None:intergenic | 50.0% |
! | AGAAGCTCGGGAGTGAGTTT+TGG | - | chr4.2:33615876-33615895 | None:intergenic | 50.0% |
! | CCGTGGTATTTGAAGTTGCG+AGG | - | chr4.2:33615939-33615958 | None:intergenic | 50.0% |
! | GGTGGTGTTAGGGTTTGGAT+TGG | - | chr4.2:33615763-33615782 | None:intergenic | 50.0% |
! | GTTTGGATTGGGATTTGGGG+CGG | - | chr4.2:33615751-33615770 | None:intergenic | 50.0% |
!! | ACATTTTGCACGGGCTGAGA+AGG | - | chr4.2:33618058-33618077 | None:intergenic | 50.0% |
!! | CTTTTTGGGCTTTTCGACGG+CGG | - | chr4.2:33615838-33615857 | None:intergenic | 50.0% |
ACCTCCACCTTCAAACCCTC+TGG | + | chr4.2:33615804-33615823 | MS.gene058013:CDS | 55.0% | |
ACGGCAATTGGGGACAATGG+CGG | - | chr4.2:33616414-33616433 | None:intergenic | 55.0% | |
ATGCTGTCGTCCACAACTGG+TGG | - | chr4.2:33616895-33616914 | None:intergenic | 55.0% | |
GAAGCTCACTGGCCAACCAT+AGG | + | chr4.2:33617271-33617290 | MS.gene058013:intron | 55.0% | |
GAAGGTGGAGGTAGGTGGAT+CGG | - | chr4.2:33615796-33615815 | None:intergenic | 55.0% | |
GAGGGTTTGAAGGTGGAGGT+AGG | - | chr4.2:33615804-33615823 | None:intergenic | 55.0% | |
GGTGGTTCACGCAACTTCGA+TGG | - | chr4.2:33616877-33616896 | None:intergenic | 55.0% | |
GGTTTGAAGGTGGAGGTAGG+TGG | - | chr4.2:33615801-33615820 | None:intergenic | 55.0% | |
GTTGCGTGAACCACCAGTTG+TGG | + | chr4.2:33616882-33616901 | MS.gene058013:CDS | 55.0% | |
TCAGGATCCGGAACAGCAAC+AGG | + | chr4.2:33615675-33615694 | MS.gene058013:CDS | 55.0% | |
TCCAGAGGGTTTGAAGGTGG+AGG | - | chr4.2:33615808-33615827 | None:intergenic | 55.0% | |
TCTGGGTCCAGAGGGTTTGA+AGG | - | chr4.2:33615814-33615833 | None:intergenic | 55.0% | |
TGGGTGGCCAAGTAACTGTC+AGG | - | chr4.2:33616321-33616340 | None:intergenic | 55.0% | |
! | ACGGGTACGTGGAGGCTTTT+TGG | - | chr4.2:33615853-33615872 | None:intergenic | 55.0% |
! | CGGGTACGTGGAGGCTTTTT+GGG | - | chr4.2:33615852-33615871 | None:intergenic | 55.0% |
! | GAGGTGGTGGTGTTAGGGTT+TGG | - | chr4.2:33615768-33615787 | None:intergenic | 55.0% |
! | TTGGGATTTGGGGCGGTGAA+AGG | - | chr4.2:33615744-33615763 | None:intergenic | 55.0% |
!! | AGACTGTGGTATGCTGGCTC+GGG | - | chr4.2:33618239-33618258 | None:intergenic | 55.0% |
!! | AGAGGAAGGCGTTCTGGGTA+AGG | - | chr4.2:33617166-33617185 | None:intergenic | 55.0% |
!! | CTTCTCTCTGATGACGGCCT+TGG | + | chr4.2:33615894-33615913 | MS.gene058013:CDS | 55.0% |
!!! | AGTTTTGGACGGGTACGTGG+AGG | - | chr4.2:33615861-33615880 | None:intergenic | 55.0% |
!!! | CTCGGGAGTGAGTTTTGGAC+GGG | - | chr4.2:33615871-33615890 | None:intergenic | 55.0% |
!!! | GCTCGGGAGTGAGTTTTGGA+CGG | - | chr4.2:33615872-33615891 | None:intergenic | 55.0% |
!!! | GTGAGTTTTGGACGGGTACG+TGG | - | chr4.2:33615864-33615883 | None:intergenic | 55.0% |
AATGCGGCAGACCAGGTCAC+TGG | + | chr4.2:33615706-33615725 | MS.gene058013:CDS | 60.0% | |
AGCAGAGCAGAGAGCCCGTA+TGG | + | chr4.2:33618177-33618196 | MS.gene058013:CDS | 60.0% | |
CTCAGCACTGCTGGACAGAC+TGG | - | chr4.2:33618152-33618171 | None:intergenic | 60.0% | |
GGGATGCTGTCGTCCACAAC+TGG | - | chr4.2:33616898-33616917 | None:intergenic | 60.0% | |
GGGTCCAGAGGGTTTGAAGG+TGG | - | chr4.2:33615811-33615830 | None:intergenic | 60.0% | |
GTGGACGACAGCATCCCAGA+TGG | + | chr4.2:33616901-33616920 | MS.gene058013:CDS | 60.0% | |
! | CGGTGGAGGTGGTGGTGTTA+GGG | - | chr4.2:33615773-33615792 | None:intergenic | 60.0% |
! | GGCTTTTCGACGGCGGATCT+GGG | - | chr4.2:33615831-33615850 | None:intergenic | 60.0% |
ACGGCGGATCTGGGTCCAGA+GGG | - | chr4.2:33615822-33615841 | None:intergenic | 65.0% | |
ATACCACGGTCGCGGCCATG+AGG | + | chr4.2:33615950-33615969 | MS.gene058013:CDS | 65.0% | |
CAGTCGCGTGACCAGTGACC+TGG | - | chr4.2:33615720-33615739 | None:intergenic | 65.0% | |
GGTGGAGGTAGGTGGATCGG+CGG | - | chr4.2:33615793-33615812 | None:intergenic | 65.0% | |
! | GCGGTGGAGGTGGTGGTGTT+AGG | - | chr4.2:33615774-33615793 | None:intergenic | 65.0% |
! | GGGCTTTTCGACGGCGGATC+TGG | - | chr4.2:33615832-33615851 | None:intergenic | 65.0% |
AGGTGGATCGGCGGTGGAGG+TGG | - | chr4.2:33615784-33615803 | None:intergenic | 70.0% | |
CAACCTCATGGCCGCGACCG+TGG | - | chr4.2:33615956-33615975 | None:intergenic | 70.0% | |
GACGGCGGATCTGGGTCCAG+AGG | - | chr4.2:33615823-33615842 | None:intergenic | 70.0% | |
GGAGGTAGGTGGATCGGCGG+TGG | - | chr4.2:33615790-33615809 | None:intergenic | 70.0% | |
GGTAGGTGGATCGGCGGTGG+AGG | - | chr4.2:33615787-33615806 | None:intergenic | 70.0% | |
TGGATCGGCGGTGGAGGTGG+TGG | - | chr4.2:33615781-33615800 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 33615672 | 33618264 | 33615672 | ID=MS.gene058013 |
chr4.2 | mRNA | 33615672 | 33618264 | 33615672 | ID=MS.gene058013.t1;Parent=MS.gene058013 |
chr4.2 | exon | 33615672 | 33615971 | 33615672 | ID=MS.gene058013.t1.exon1;Parent=MS.gene058013.t1 |
chr4.2 | CDS | 33615672 | 33615971 | 33615672 | ID=cds.MS.gene058013.t1;Parent=MS.gene058013.t1 |
chr4.2 | exon | 33616063 | 33616185 | 33616063 | ID=MS.gene058013.t1.exon2;Parent=MS.gene058013.t1 |
chr4.2 | CDS | 33616063 | 33616185 | 33616063 | ID=cds.MS.gene058013.t1;Parent=MS.gene058013.t1 |
chr4.2 | exon | 33616829 | 33616931 | 33616829 | ID=MS.gene058013.t1.exon3;Parent=MS.gene058013.t1 |
chr4.2 | CDS | 33616829 | 33616931 | 33616829 | ID=cds.MS.gene058013.t1;Parent=MS.gene058013.t1 |
chr4.2 | exon | 33617489 | 33617595 | 33617489 | ID=MS.gene058013.t1.exon4;Parent=MS.gene058013.t1 |
chr4.2 | CDS | 33617489 | 33617595 | 33617489 | ID=cds.MS.gene058013.t1;Parent=MS.gene058013.t1 |
chr4.2 | exon | 33618052 | 33618264 | 33618052 | ID=MS.gene058013.t1.exon5;Parent=MS.gene058013.t1 |
chr4.2 | CDS | 33618052 | 33618264 | 33618052 | ID=cds.MS.gene058013.t1;Parent=MS.gene058013.t1 |
Gene Sequence |
Protein sequence |