AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene23078


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23078.t1 MTR_7g106640 94.382 623 35 0 1 623 1 623 0.0 1153
MS.gene23078.t1 MTR_7g106640 94.382 623 35 0 1 623 1 623 0.0 1153
MS.gene23078.t1 MTR_7g106640 93.536 526 34 0 98 623 1 526 0.0 958
MS.gene23078.t1 MTR_7g106640 93.860 456 28 0 168 623 1 456 0.0 816
MS.gene23078.t1 MTR_1g055315 61.951 410 127 7 1 391 1 400 5.18e-165 485
MS.gene23078.t1 MTR_1g055315 37.815 119 66 3 508 625 373 484 1.11e-12 71.2
MS.gene23078.t1 MTR_1g055315 60.933 343 108 5 67 391 1 335 5.49e-138 413
MS.gene23078.t1 MTR_1g055315 37.815 119 66 3 508 625 308 419 1.00e-12 71.2
MS.gene23078.t1 MTR_2g066850 71.053 228 43 4 123 349 732 937 1.78e-89 301
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23078.t1 AT5G06440 53.165 316 135 3 1 315 1 304 4.38e-116 355
MS.gene23078.t1 AT5G06440 53.165 316 135 3 1 315 1 304 4.38e-116 355
MS.gene23078.t1 AT5G06440 51.852 324 134 5 1 315 1 311 1.19e-111 344
MS.gene23078.t1 AT5G06440 53.310 287 119 4 1 285 1 274 3.42e-103 315
MS.gene23078.t1 AT5G06440 59.565 230 88 2 87 315 5 230 1.31e-98 307
MS.gene23078.t1 AT5G06440 59.817 219 83 2 98 315 1 215 1.06e-94 296
MS.gene23078.t1 AT3G11720 44.411 331 152 6 1 326 1 304 8.46e-94 299
MS.gene23078.t1 AT3G11720 44.411 331 152 6 1 326 1 304 8.46e-94 299
MS.gene23078.t1 AT3G11720 44.411 331 152 6 1 326 55 358 8.50e-93 298
MS.gene23078.t1 AT3G11720 49.130 230 97 4 98 326 1 211 3.55e-74 245

Find 105 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTGTAATTATTTGCATTT+TGG 0.137288 7.2:+7402131 None:intergenic
ATCTTCAATATTTGCTTCTA+TGG 0.200100 7.2:+7401670 None:intergenic
ATTCTCACCATTTCTTATAA+AGG 0.226461 7.2:+7403637 None:intergenic
CGACAATCTCACAATTCTTT+TGG 0.239123 7.2:+7401711 None:intergenic
TTGTAGGGCAATAGGGAATT+TGG 0.245211 7.2:-7402553 MS.gene23078:intron
TTCATTTCAAGGCAACTTAT+TGG 0.246795 7.2:-7402492 MS.gene23078:CDS
GCCTTGAAATGAAATTTATA+AGG 0.259631 7.2:+7402502 None:intergenic
TTCAATAAGCAATGTATTAT+AGG 0.275063 7.2:+7403831 None:intergenic
CTCACAACACCCTTTGCTTC+AGG 0.277935 7.2:+7402901 None:intergenic
TATGTTGCTGCTTGGTCCTT+TGG 0.311330 7.2:+7401358 None:intergenic
TTCTCACCATTTCTTATAAA+GGG 0.318688 7.2:+7403638 None:intergenic
CATCTGAAAGAAGTTATTTC+CGG 0.324574 7.2:-7402840 MS.gene23078:intron
GATGTATTGCTTTCCTCAAA+TGG 0.327557 7.2:+7401893 None:intergenic
GTGCTATTTGTTCTCCAGTC+TGG 0.329723 7.2:+7403313 None:intergenic
CCCTTATAAATTTCATTTCA+AGG 0.335848 7.2:-7402503 MS.gene23078:CDS
GAGAACAAATAGCACTAATA+AGG 0.341307 7.2:-7403305 MS.gene23078:intron
CTTATTGAAGGCTATGTAGA+TGG 0.348985 7.2:-7403817 MS.gene23078:CDS
GAGATTGCAGAAGCAGATAT+TGG 0.359607 7.2:-7401818 MS.gene23078:CDS
AAAATTAATGAGACTATTGA+TGG 0.372387 7.2:-7402943 MS.gene23078:CDS
AATCATCCCTTTATAAGAAA+TGG 0.382734 7.2:-7403644 MS.gene23078:intron
TCAATAAGCAATGTATTATA+GGG 0.386854 7.2:+7403832 None:intergenic
TATAATACATTGCTTATTGA+AGG 0.397643 7.2:-7403829 MS.gene23078:CDS
TATCAGCTCAAATGTAAAAC+AGG 0.404649 7.2:-7401552 MS.gene23078:CDS
ATTTCATCAGTTCAGAAATA+CGG 0.409322 7.2:-7401506 MS.gene23078:CDS
CCTTGAAATGAAATTTATAA+GGG 0.411284 7.2:+7402503 None:intergenic
TTAGTCAAAGTAAGCAAGAT+TGG 0.417597 7.2:-7402186 MS.gene23078:CDS
TTCACAATCAGAGATGGAAT+TGG 0.417761 7.2:-7404324 MS.gene23078:CDS
CTTCTTTCGACAGTTAAAAC+AGG 0.422510 7.2:-7403902 MS.gene23078:intron
GGAATTCCGCGTTATGTATC+GGG 0.427926 7.2:-7403872 MS.gene23078:CDS
ATTGAATATGATAATATAAG+AGG 0.428070 7.2:-7401602 MS.gene23078:CDS
TTAGCACATCAAGGACTGAT+TGG 0.429890 7.2:-7404125 MS.gene23078:CDS
CTCCATGGCCACTGTCTACA+AGG 0.436068 7.2:-7403166 MS.gene23078:CDS
TGATACATCTATTGTGCTAA+AGG 0.436279 7.2:-7401735 MS.gene23078:CDS
TGCGACTGACCAACATCAAC+AGG 0.445763 7.2:+7403793 None:intergenic
GGGAGGTTATGTTATACAAA+AGG 0.451155 7.2:-7402866 MS.gene23078:CDS
AGGAATTCCGCGTTATGTAT+CGG 0.463488 7.2:-7403873 MS.gene23078:CDS
ATGAACGGCGACAAAGAATT+CGG 0.464485 7.2:-7402331 MS.gene23078:CDS
TCCCGTAGTATGTTGCTGCT+TGG 0.470591 7.2:+7401350 None:intergenic
GTTGTGAGAATTGATTTGTT+GGG 0.475038 7.2:-7402886 MS.gene23078:CDS
AGTACACGACATTCCATTTG+AGG 0.475441 7.2:-7401906 MS.gene23078:CDS
TGTGCAATATAGGGAGAGGT+TGG 0.477595 7.2:-7404423 MS.gene23078:CDS
AGGCTTTAGAAACATTAGAA+AGG 0.478529 7.2:-7401532 MS.gene23078:CDS
GATACATCTATTGTGCTAAA+GGG 0.484119 7.2:-7401734 MS.gene23078:CDS
GATACATAAAGATGGACAAA+AGG 0.484559 7.2:-7404454 None:intergenic
ATCCATAGCATTTGATTCAT+CGG 0.487059 7.2:+7402255 None:intergenic
GGCTTTAGAAACATTAGAAA+GGG 0.487114 7.2:-7401531 MS.gene23078:CDS
AGATATTGTACAAATTGAAA+AGG 0.488307 7.2:-7401651 MS.gene23078:CDS
GTATTATAGGGAGTTCCCTC+TGG 0.491261 7.2:+7403844 None:intergenic
TGACAGCTTTATGCGTCTCA+TGG 0.495714 7.2:-7403668 MS.gene23078:intron
CTTTGACTAAGCTCTTCAGC+AGG 0.503153 7.2:+7402199 None:intergenic
TGTTGTGAGAATTGATTTGT+TGG 0.503261 7.2:-7402887 MS.gene23078:CDS
TAGTCAAAGTAAGCAAGATT+GGG 0.503463 7.2:-7402185 MS.gene23078:CDS
GACCAAGCAGCAACATACTA+CGG 0.504286 7.2:-7401352 MS.gene23078:CDS
TCAAGGCAACTTATTGGCAG+TGG 0.505086 7.2:-7402486 MS.gene23078:CDS
TGTTTGCAGAAGGTCCAGAC+TGG 0.509433 7.2:-7403327 MS.gene23078:CDS
AAGTAAATGACATTTCAGTC+GGG 0.509863 7.2:-7401763 MS.gene23078:CDS
GATGCAGTAACTTTGAAAGT+AGG 0.512463 7.2:+7403354 None:intergenic
TGCATCTGATTGTTTGCAGA+AGG 0.516483 7.2:-7403337 MS.gene23078:CDS
TACCGATGAATCAAATGCTA+TGG 0.518027 7.2:-7402257 MS.gene23078:CDS
AAAGTAAATGACATTTCAGT+CGG 0.519463 7.2:-7401764 MS.gene23078:CDS
ATGAAATTTATAAGGGATGG+AGG 0.526404 7.2:+7402510 None:intergenic
AGGGAATTTGGATATCAAGC+TGG 0.527263 7.2:-7402541 MS.gene23078:CDS
GAAATGAAATTTATAAGGGA+TGG 0.541927 7.2:+7402507 None:intergenic
ACAGTTAAAACAGGATAATG+AGG 0.545296 7.2:-7403893 MS.gene23078:intron
AAAAGATGTATCACCTTCCT+CGG 0.546283 7.2:+7402033 None:intergenic
GACAGCTTTATGCGTCTCAT+GGG 0.548438 7.2:-7403667 MS.gene23078:intron
AGAGATTGTACAAATTGAGA+AGG 0.555855 7.2:-7401939 MS.gene23078:CDS
AGTGCTTCTGCAGATGAAAG+TGG 0.566002 7.2:-7404153 MS.gene23078:CDS
CATGACATTTCAACCGAGGA+AGG 0.569041 7.2:-7402046 MS.gene23078:CDS
AGAGATTGTACAAAGTGAGA+AGG 0.571592 7.2:-7402083 MS.gene23078:CDS
TCCCTTGTAGACAGTGGCCA+TGG 0.571642 7.2:+7403164 None:intergenic
ATAATTTGTAAGATCAAATG+AGG 0.571787 7.2:+7404388 None:intergenic
TCGTTCTTCACAATCAGAGA+TGG 0.574271 7.2:-7404330 MS.gene23078:CDS
AAGAAAGGATGAAGCCTCCA+TGG 0.577075 7.2:-7403181 MS.gene23078:intron
ACCAAGCAGCAACATACTAC+GGG 0.580272 7.2:-7401351 MS.gene23078:CDS
TTCGGTTCATTCAGGCACAC+AGG 0.582875 7.2:-7401032 MS.gene23078:intron
TGAATCAAATGCTATGGATG+AGG 0.587498 7.2:-7402251 MS.gene23078:CDS
AGGAGCAGATCTTAGCATGA+AGG 0.589267 7.2:-7401012 None:intergenic
TGGTTTCAGACTTTATCAGA+AGG 0.594007 7.2:-7402466 MS.gene23078:intron
GAAAATGATGTCAGTGCCAA+AGG 0.594639 7.2:-7401374 MS.gene23078:CDS
GTGGAGGATTTAGCACATCA+AGG 0.603076 7.2:-7404134 MS.gene23078:CDS
GTGAGAATTGATTTGTTGGG+AGG 0.607741 7.2:-7402883 MS.gene23078:CDS
ATATTGTGCAATATAGGGAG+AGG 0.608785 7.2:-7404427 MS.gene23078:CDS
CTTGTAGACAGTGGCCATGG+AGG 0.613608 7.2:+7403167 None:intergenic
TGATGTGATTCCTGAAGCAA+AGG 0.614045 7.2:-7402911 MS.gene23078:CDS
AACATACAACAAGTCAGTCA+AGG 0.623049 7.2:+7402303 None:intergenic
TCTCTGATTGTGAAGAACGA+TGG 0.629137 7.2:+7404333 None:intergenic
GCTGTAGCTTCTAAGATGAA+CGG 0.631947 7.2:-7402346 MS.gene23078:CDS
AGTAAATGACATTTCAGTCG+GGG 0.634575 7.2:-7401762 MS.gene23078:CDS
CAATCAGAGATGGAATTGGA+AGG 0.638150 7.2:-7404320 MS.gene23078:intron
CAAAATGCAAATAATTACAA+TGG 0.638245 7.2:-7402130 MS.gene23078:CDS
GTAGATGGACCTGTTGATGT+TGG 0.638645 7.2:-7403802 MS.gene23078:intron
TTCCGCGTTATGTATCGGGA+AGG 0.644276 7.2:-7403868 MS.gene23078:CDS
TATGTATCGGGAAGGACCAG+AGG 0.648489 7.2:-7403860 MS.gene23078:CDS
TCCATGGCCACTGTCTACAA+GGG 0.652310 7.2:-7403165 MS.gene23078:CDS
ATGTATCGGGAAGGACCAGA+GGG 0.653338 7.2:-7403859 MS.gene23078:CDS
AATACGGATTTCGTTCACGC+AGG 0.658313 7.2:-7401490 MS.gene23078:CDS
ATGGCCACTGTCTACAAGGG+AGG 0.663692 7.2:-7403162 MS.gene23078:CDS
CGGCGACAAAGAATTCGGCA+AGG 0.680174 7.2:-7402326 MS.gene23078:CDS
GATGTGATTCCTGAAGCAAA+GGG 0.685960 7.2:-7402910 MS.gene23078:CDS
ACAGCCTCCCTTGTAGACAG+TGG 0.690378 7.2:+7403158 None:intergenic
GCTTCTGCAGATGAAAGTGG+AGG 0.692008 7.2:-7404150 MS.gene23078:CDS
AAAGTAGGAACAGTAAACTG+TGG 0.716270 7.2:+7403369 None:intergenic
AGTGCATGACATTTCAACCG+AGG 0.717008 7.2:-7402050 MS.gene23078:CDS
GTCCTTCCCGATACATAACG+CGG 0.745686 7.2:+7403866 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATGTCAAAATATATAATA+TGG + chr7.2:7401744-7401763 None:intergenic 15.0%
!! ACGAATAATTACAAAAATTA+TGG - chr7.2:7404279-7404298 MS.gene23078:intron 15.0%
!! AGAACAATTAATGAAAATTA+TGG - chr7.2:7401966-7401985 MS.gene23078:CDS 15.0%
!! ATTGAATATGATAATATAAG+AGG - chr7.2:7403856-7403875 MS.gene23078:CDS 15.0%
!! GATAAAAATAAAACAAAACT+TGG + chr7.2:7401388-7401407 None:intergenic 15.0%
!! TGAAACAAAATATTACTTAT+TGG + chr7.2:7402832-7402851 None:intergenic 15.0%
!!! ATAAGTAATATTTTGTTTCA+TGG - chr7.2:7402832-7402851 MS.gene23078:intron 15.0%
!!! ATTTGTTGTTAAACTTAAAA+AGG + chr7.2:7401720-7401739 None:intergenic 15.0%
!!! ATTTTATATCATTTGTTGAT+TGG - chr7.2:7402688-7402707 MS.gene23078:intron 15.0%
!!! ATTTTTTGTCAAATTTTGTA+GGG - chr7.2:7402890-7402909 MS.gene23078:CDS 15.0%
!!! TATTTTTTGTCAAATTTTGT+AGG - chr7.2:7402889-7402908 MS.gene23078:CDS 15.0%
!!! TTTGTTGTTAAACTTAAAAA+GGG + chr7.2:7401719-7401738 None:intergenic 15.0%
!! AAAATTAATGAGACTATTGA+TGG - chr7.2:7402515-7402534 MS.gene23078:CDS 20.0%
!! AGAAATGAAAATTGTGATAA+AGG + chr7.2:7402062-7402081 None:intergenic 20.0%
!! AGATATTGTACAAATTGAAA+AGG - chr7.2:7403807-7403826 MS.gene23078:CDS 20.0%
!! CAAAATGCAAATAATTACAA+TGG - chr7.2:7403328-7403347 MS.gene23078:CDS 20.0%
!! CCTTGAAATGAAATTTATAA+GGG + chr7.2:7402958-7402977 None:intergenic 20.0%
!! GAAAAATATTGTGCAATATA+GGG - chr7.2:7401026-7401045 MS.gene23078:intron 20.0%
!! TATAATACATTGCTTATTGA+AGG - chr7.2:7401629-7401648 MS.gene23078:CDS 20.0%
!! TATGATTGTTTGGAAATATT+AGG - chr7.2:7404350-7404369 MS.gene23078:CDS 20.0%
!! TATTGTTACATATGATTGTT+TGG - chr7.2:7404340-7404359 MS.gene23078:CDS 20.0%
!! TCAATAAGCAATGTATTATA+GGG + chr7.2:7401629-7401648 None:intergenic 20.0%
!! TTAGAAATTTCTCTTTCATT+GGG - chr7.2:7402734-7402753 MS.gene23078:intron 20.0%
!! TTCAATAAGCAATGTATTAT+AGG + chr7.2:7401630-7401649 None:intergenic 20.0%
!!! AATACATCTTTTGTACTAAA+AGG - chr7.2:7403580-7403599 MS.gene23078:intron 20.0%
!!! ATAATTTGTAAGATCAAATG+AGG + chr7.2:7401073-7401092 None:intergenic 20.0%
!!! CATTGTAATTATTTGCATTT+TGG + chr7.2:7403330-7403349 None:intergenic 20.0%
!!! TTTATGCTTAATTTTATCTC+AGG - chr7.2:7402478-7402497 MS.gene23078:CDS 20.0%
! AAAGTAAATGACATTTCAGT+CGG - chr7.2:7403694-7403713 MS.gene23078:intron 25.0%
! AATCATCCCTTTATAAGAAA+TGG - chr7.2:7401814-7401833 MS.gene23078:CDS 25.0%
! ACTCATGAATATCTATGTAA+GGG - chr7.2:7401935-7401954 MS.gene23078:CDS 25.0%
! ATATAAGCATTCAAAAGTGA+AGG + chr7.2:7402242-7402261 None:intergenic 25.0%
! ATCTTCAATATTTGCTTCTA+TGG + chr7.2:7403791-7403810 None:intergenic 25.0%
! ATTCTCACCATTTCTTATAA+AGG + chr7.2:7401824-7401843 None:intergenic 25.0%
! ATTTCATCAGTTCAGAAATA+CGG - chr7.2:7403952-7403971 MS.gene23078:intron 25.0%
! CCCTTATAAATTTCATTTCA+AGG - chr7.2:7402955-7402974 MS.gene23078:CDS 25.0%
! GAAATGAAATTTATAAGGGA+TGG + chr7.2:7402954-7402973 None:intergenic 25.0%
! GCCTTGAAATGAAATTTATA+AGG + chr7.2:7402959-7402978 None:intergenic 25.0%
! GGAAAAATATTGTGCAATAT+AGG - chr7.2:7401025-7401044 MS.gene23078:intron 25.0%
! GTTAGAAATTTCTCTTTCAT+TGG - chr7.2:7402733-7402752 MS.gene23078:intron 25.0%
! TCATCCTTTCTTACAAAATA+TGG + chr7.2:7402269-7402288 None:intergenic 25.0%
! TTCTCACCATTTCTTATAAA+GGG + chr7.2:7401823-7401842 None:intergenic 25.0%
!! ATTGATAACTTCATTTCAGA+AGG - chr7.2:7401410-7401429 MS.gene23078:CDS 25.0%
!! TATCACAATTTTCATTTCTC+AGG - chr7.2:7402063-7402082 MS.gene23078:CDS 25.0%
!! TCTGAAATGAAGTTATCAAT+TGG + chr7.2:7401410-7401429 None:intergenic 25.0%
!! TGTTCCATATTTTGTAAGAA+AGG - chr7.2:7402262-7402281 MS.gene23078:CDS 25.0%
!! TTGATAACTTCATTTCAGAA+GGG - chr7.2:7401411-7401430 MS.gene23078:CDS 25.0%
!!! GATAGTAGTTCTTTTGAAAA+CGG - chr7.2:7402362-7402381 MS.gene23078:intron 25.0%
!!! TCTAAGCACTGATTATAAAT+GGG + chr7.2:7404217-7404236 None:intergenic 25.0%
!!! TCTATTTCTTTTTTTGTTGC+AGG - chr7.2:7401221-7401240 MS.gene23078:intron 25.0%
!!! TTGACACTTTTATTTCCTTT+CGG - chr7.2:7404408-7404427 MS.gene23078:CDS 25.0%
AAGTAAATGACATTTCAGTC+GGG - chr7.2:7403695-7403714 MS.gene23078:intron 30.0%
ACAGTTAAAACAGGATAATG+AGG - chr7.2:7401565-7401584 MS.gene23078:CDS 30.0%
ACTCACTTAAAAAAACTCAC+CGG + chr7.2:7402640-7402659 None:intergenic 30.0%
AGAAACAGAAAAAAAGATCG+AGG + chr7.2:7402394-7402413 None:intergenic 30.0%
AGAGATTGTACAAATTGAGA+AGG - chr7.2:7403519-7403538 MS.gene23078:intron 30.0%
AGATAAACTCATGATACTAG+TGG + chr7.2:7401204-7401223 None:intergenic 30.0%
ATCCATAGCATTTGATTCAT+CGG + chr7.2:7403206-7403225 None:intergenic 30.0%
ATGAAATTTATAAGGGATGG+AGG + chr7.2:7402951-7402970 None:intergenic 30.0%
ATTGTTACACAAGATTGCAT+TGG + chr7.2:7401453-7401472 None:intergenic 30.0%
CACTCATGAATATCTATGTA+AGG - chr7.2:7401934-7401953 MS.gene23078:CDS 30.0%
GAGAACAAATAGCACTAATA+AGG - chr7.2:7402153-7402172 MS.gene23078:CDS 30.0%
GATACATCTATTGTGCTAAA+GGG - chr7.2:7403724-7403743 MS.gene23078:intron 30.0%
GTGTGCTTAATAATATCAGT+TGG + chr7.2:7402002-7402021 None:intergenic 30.0%
TACAATGTGAGATTCTTGAA+TGG - chr7.2:7404248-7404267 MS.gene23078:intron 30.0%
TAGTCAAAGTAAGCAAGATT+GGG - chr7.2:7403273-7403292 MS.gene23078:intron 30.0%
TATCAGCTCAAATGTAAAAC+AGG - chr7.2:7403906-7403925 MS.gene23078:intron 30.0%
TGATAACTTCATTTCAGAAG+GGG - chr7.2:7401412-7401431 MS.gene23078:CDS 30.0%
TGATACATCTATTGTGCTAA+AGG - chr7.2:7403723-7403742 MS.gene23078:intron 30.0%
TTAGTCAAAGTAAGCAAGAT+TGG - chr7.2:7403272-7403291 MS.gene23078:intron 30.0%
TTCATTTCAAGGCAACTTAT+TGG - chr7.2:7402966-7402985 MS.gene23078:intron 30.0%
! AATGGTGAGATTTTAGATAC+AGG - chr7.2:7403346-7403365 MS.gene23078:CDS 30.0%
! CATCTGAAAGAAGTTATTTC+CGG - chr7.2:7402618-7402637 MS.gene23078:intron 30.0%
! CCTTGGTTATTTAACTTCTT+CGG - chr7.2:7402763-7402782 MS.gene23078:intron 30.0%
! GATACATCTTTTGTACTACA+TGG - chr7.2:7403436-7403455 MS.gene23078:intron 30.0%
! TAATAATATCAGTTGGTGTC+TGG + chr7.2:7401995-7402014 None:intergenic 30.0%
! TATATGATTTGAGCTTGTTC+TGG - chr7.2:7401163-7401182 MS.gene23078:intron 30.0%
! TCAAATTTTGTAGGGCAATA+GGG - chr7.2:7402898-7402917 MS.gene23078:CDS 30.0%
! TGAACAAGTTTTGCAGAATA+CGG + chr7.2:7404054-7404073 None:intergenic 30.0%
!! AAAAGTGAAGGCGTTTAATA+TGG + chr7.2:7402230-7402249 None:intergenic 30.0%
!! AGGCTTTAGAAACATTAGAA+AGG - chr7.2:7403926-7403945 MS.gene23078:intron 30.0%
!! GGCTTTAGAAACATTAGAAA+GGG - chr7.2:7403927-7403946 MS.gene23078:intron 30.0%
!! GTCTAAGCACTGATTATAAA+TGG + chr7.2:7404218-7404237 None:intergenic 30.0%
!! GTTGTGAGAATTGATTTGTT+GGG - chr7.2:7402572-7402591 MS.gene23078:intron 30.0%
!! TGTTGTGAGAATTGATTTGT+TGG - chr7.2:7402571-7402590 MS.gene23078:intron 30.0%
!!! TTTTTTTGTTGCAGGATATG+AGG - chr7.2:7401229-7401248 MS.gene23078:intron 30.0%
AAAAGATGTATCACCTTCCT+CGG + chr7.2:7403428-7403447 None:intergenic 35.0%
AAAGTAGGAACAGTAAACTG+TGG + chr7.2:7402092-7402111 None:intergenic 35.0%
AACATACAACAAGTCAGTCA+AGG + chr7.2:7403158-7403177 None:intergenic 35.0%
AACATTAGTAGTAGCTTGGA+AGG - chr7.2:7402665-7402684 MS.gene23078:intron 35.0%
AGAGATTGTACAAAGTGAGA+AGG - chr7.2:7403375-7403394 MS.gene23078:CDS 35.0%
AGTAAATGACATTTCAGTCG+GGG - chr7.2:7403696-7403715 MS.gene23078:intron 35.0%
ATATTGTGCAATATAGGGAG+AGG - chr7.2:7401031-7401050 MS.gene23078:intron 35.0%
ATCTCGAAATCCAAAACTTC+AGG - chr7.2:7404142-7404161 MS.gene23078:CDS 35.0%
ATGGCGAGTGAGATTAAAAT+GGG + chr7.2:7402211-7402230 None:intergenic 35.0%
CAGAAGGGGAAAAAATTCAA+TGG - chr7.2:7401426-7401445 MS.gene23078:CDS 35.0%
CATGAATATCTATGTAAGGG+TGG - chr7.2:7401938-7401957 MS.gene23078:CDS 35.0%
CCGAAGAAGTTAAATAACCA+AGG + chr7.2:7402766-7402785 None:intergenic 35.0%
CTCAAACATTAGTAGTAGCT+TGG - chr7.2:7402661-7402680 MS.gene23078:intron 35.0%
CTTATTGAAGGCTATGTAGA+TGG - chr7.2:7401641-7401660 MS.gene23078:CDS 35.0%
CTTCTTTCGACAGTTAAAAC+AGG - chr7.2:7401556-7401575 MS.gene23078:CDS 35.0%
GATGTATTGCTTTCCTCAAA+TGG + chr7.2:7403568-7403587 None:intergenic 35.0%
GGGAGGTTATGTTATACAAA+AGG - chr7.2:7402592-7402611 MS.gene23078:intron 35.0%
TACCGATGAATCAAATGCTA+TGG - chr7.2:7403201-7403220 MS.gene23078:intron 35.0%
TATGGCGAGTGAGATTAAAA+TGG + chr7.2:7402212-7402231 None:intergenic 35.0%
TATTTCCTTTCGGTTCATTC+AGG - chr7.2:7404418-7404437 MS.gene23078:CDS 35.0%
TGAATCAAATGCTATGGATG+AGG - chr7.2:7403207-7403226 MS.gene23078:intron 35.0%
TGGTTTCAGACTTTATCAGA+AGG - chr7.2:7402992-7403011 MS.gene23078:intron 35.0%
TTCACAATCAGAGATGGAAT+TGG - chr7.2:7401134-7401153 MS.gene23078:intron 35.0%
TTGGGTGAAAAATATGTCTC+AGG - chr7.2:7403291-7403310 MS.gene23078:intron 35.0%
! CACAATTTTCATTTCTCAGG+TGG - chr7.2:7402066-7402085 MS.gene23078:CDS 35.0%
! CGACAATCTCACAATTCTTT+TGG + chr7.2:7403750-7403769 None:intergenic 35.0%
! CTGACATCATTTTCAACAGA+TGG + chr7.2:7404078-7404097 None:intergenic 35.0%
! GATGCAGTAACTTTGAAAGT+AGG + chr7.2:7402107-7402126 None:intergenic 35.0%
! GTCAAATTTTGTAGGGCAAT+AGG - chr7.2:7402897-7402916 MS.gene23078:CDS 35.0%
! GTTAGACTTACCTGAAGTTT+TGG + chr7.2:7404155-7404174 None:intergenic 35.0%
ACAGCCTATAACAACACCAA+GGG + chr7.2:7403097-7403116 None:intergenic 40.0%
AGGAATTCCGCGTTATGTAT+CGG - chr7.2:7401585-7401604 MS.gene23078:CDS 40.0%
AGGGAATTTGGATATCAAGC+TGG - chr7.2:7402917-7402936 MS.gene23078:CDS 40.0%
AGTACACGACATTCCATTTG+AGG - chr7.2:7403552-7403571 MS.gene23078:intron 40.0%
ATGAACGGCGACAAAGAATT+CGG - chr7.2:7403127-7403146 MS.gene23078:CDS 40.0%
CAAAACTGCTTTGTAAGGTG+AGG - chr7.2:7404184-7404203 MS.gene23078:CDS 40.0%
CAATCAGAGATGGAATTGGA+AGG - chr7.2:7401138-7401157 MS.gene23078:intron 40.0%
CCTCACAAAACTGCTTTGTA+AGG - chr7.2:7404179-7404198 MS.gene23078:CDS 40.0%
CTTTCATTGGGTTTGAACCT+TGG - chr7.2:7402746-7402765 MS.gene23078:intron 40.0%
GAAAATGATGTCAGTGCCAA+AGG - chr7.2:7404084-7404103 MS.gene23078:intron 40.0%
GAGATTGCAGAAGCAGATAT+TGG - chr7.2:7403640-7403659 MS.gene23078:intron 40.0%
GATGTGATTCCTGAAGCAAA+GGG - chr7.2:7402548-7402567 MS.gene23078:CDS 40.0%
GGTGAAAAATATGTCTCAGG+AGG - chr7.2:7403294-7403313 MS.gene23078:intron 40.0%
TACAGCCTATAACAACACCA+AGG + chr7.2:7403098-7403117 None:intergenic 40.0%
TCAAGGACTGATTGGAAAGT+AGG - chr7.2:7401341-7401360 MS.gene23078:intron 40.0%
TCGTTCTTCACAATCAGAGA+TGG - chr7.2:7401128-7401147 MS.gene23078:intron 40.0%
TCTCTGATTGTGAAGAACGA+TGG + chr7.2:7401128-7401147 None:intergenic 40.0%
TGATGTGATTCCTGAAGCAA+AGG - chr7.2:7402547-7402566 MS.gene23078:CDS 40.0%
TGCATCTGATTGTTTGCAGA+AGG - chr7.2:7402121-7402140 MS.gene23078:CDS 40.0%
TTAGCACATCAAGGACTGAT+TGG - chr7.2:7401333-7401352 MS.gene23078:intron 40.0%
TTGTAGGGCAATAGGGAATT+TGG - chr7.2:7402905-7402924 MS.gene23078:CDS 40.0%
! CTTTTGTACTACATGGCAGT+AGG - chr7.2:7403443-7403462 MS.gene23078:intron 40.0%
!! CCTTACAAAGCAGTTTTGTG+AGG + chr7.2:7404182-7404201 None:intergenic 40.0%
!! GCTGTAGCTTCTAAGATGAA+CGG - chr7.2:7403112-7403131 MS.gene23078:CDS 40.0%
!! GTGAGAATTGATTTGTTGGG+AGG - chr7.2:7402575-7402594 MS.gene23078:intron 40.0%
!! TACAAAGCAGTTTTGTGAGG+TGG + chr7.2:7404179-7404198 None:intergenic 40.0%
AAGAAAGGATGAAGCCTCCA+TGG - chr7.2:7402277-7402296 MS.gene23078:CDS 45.0%
AATACGGATTTCGTTCACGC+AGG - chr7.2:7403968-7403987 MS.gene23078:intron 45.0%
ACCAAGCAGCAACATACTAC+GGG - chr7.2:7404107-7404126 MS.gene23078:intron 45.0%
AGTGCATGACATTTCAACCG+AGG - chr7.2:7403408-7403427 MS.gene23078:intron 45.0%
AGTGCTTCTGCAGATGAAAG+TGG - chr7.2:7401305-7401324 MS.gene23078:intron 45.0%
CATGACATTTCAACCGAGGA+AGG - chr7.2:7403412-7403431 MS.gene23078:intron 45.0%
CTTTGACTAAGCTCTTCAGC+AGG + chr7.2:7403262-7403281 None:intergenic 45.0%
GACCAAGCAGCAACATACTA+CGG - chr7.2:7404106-7404125 MS.gene23078:intron 45.0%
GGAATTCCGCGTTATGTATC+GGG - chr7.2:7401586-7401605 MS.gene23078:CDS 45.0%
GTAGATGGACCTGTTGATGT+TGG - chr7.2:7401656-7401675 MS.gene23078:CDS 45.0%
GTATTATAGGGAGTTCCCTC+TGG + chr7.2:7401617-7401636 None:intergenic 45.0%
GTGGAGGATTTAGCACATCA+AGG - chr7.2:7401324-7401343 MS.gene23078:intron 45.0%
TCAAGGCAACTTATTGGCAG+TGG - chr7.2:7402972-7402991 MS.gene23078:intron 45.0%
TGTGCAATATAGGGAGAGGT+TGG - chr7.2:7401035-7401054 MS.gene23078:intron 45.0%
! GACAGCTTTATGCGTCTCAT+GGG - chr7.2:7401791-7401810 MS.gene23078:CDS 45.0%
! TATGTTGCTGCTTGGTCCTT+TGG + chr7.2:7404103-7404122 None:intergenic 45.0%
! TGACAGCTTTATGCGTCTCA+TGG - chr7.2:7401790-7401809 MS.gene23078:CDS 45.0%
!! GTGCTATTTGTTCTCCAGTC+TGG + chr7.2:7402148-7402167 None:intergenic 45.0%
ATGTATCGGGAAGGACCAGA+GGG - chr7.2:7401599-7401618 MS.gene23078:CDS 50.0%
CCTATAACAACACCAAGGGC+TGG + chr7.2:7403093-7403112 None:intergenic 50.0%
CTCACAACACCCTTTGCTTC+AGG + chr7.2:7402560-7402579 None:intergenic 50.0%
GCTTCTGCAGATGAAAGTGG+AGG - chr7.2:7401308-7401327 MS.gene23078:intron 50.0%
GTCCTTCCCGATACATAACG+CGG + chr7.2:7401595-7401614 None:intergenic 50.0%
GTGTGCCTGAATGAACCGAA+AGG + chr7.2:7404426-7404445 None:intergenic 50.0%
TATGTATCGGGAAGGACCAG+AGG - chr7.2:7401598-7401617 MS.gene23078:CDS 50.0%
TCCATGGCCACTGTCTACAA+GGG - chr7.2:7402293-7402312 MS.gene23078:CDS 50.0%
TCCCGTAGTATGTTGCTGCT+TGG + chr7.2:7404111-7404130 None:intergenic 50.0%
TGCGACTGACCAACATCAAC+AGG + chr7.2:7401668-7401687 None:intergenic 50.0%
TGTTTGCAGAAGGTCCAGAC+TGG - chr7.2:7402131-7402150 MS.gene23078:CDS 50.0%
TTCCGCGTTATGTATCGGGA+AGG - chr7.2:7401590-7401609 MS.gene23078:CDS 50.0%
TTCGGTTCATTCAGGCACAC+AGG - chr7.2:7404426-7404445 MS.gene23078:CDS 50.0%
TTCTGACACTAACCAGCCCT+TGG - chr7.2:7403078-7403097 MS.gene23078:intron 50.0%
!! CCAGCCCTTGGTGTTGTTAT+AGG - chr7.2:7403090-7403109 MS.gene23078:intron 50.0%
ACAGCCTCCCTTGTAGACAG+TGG + chr7.2:7402303-7402322 None:intergenic 55.0%
ATGGCCACTGTCTACAAGGG+AGG - chr7.2:7402296-7402315 MS.gene23078:CDS 55.0%
CGGCGACAAAGAATTCGGCA+AGG - chr7.2:7403132-7403151 MS.gene23078:CDS 55.0%
CTCCATGGCCACTGTCTACA+AGG - chr7.2:7402292-7402311 MS.gene23078:CDS 55.0%
CTTGTAGACAGTGGCCATGG+AGG + chr7.2:7402294-7402313 None:intergenic 55.0%
TCCCTTGTAGACAGTGGCCA+TGG + chr7.2:7402297-7402316 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 7401015 7404465 7401015 ID=MS.gene23078
chr7.2 mRNA 7401015 7404465 7401015 ID=MS.gene23078.t1;Parent=MS.gene23078
chr7.2 exon 7404321 7404465 7404321 ID=MS.gene23078.t1.exon1;Parent=MS.gene23078.t1
chr7.2 CDS 7404321 7404465 7404321 ID=cds.MS.gene23078.t1;Parent=MS.gene23078.t1
chr7.2 exon 7404122 7404237 7404122 ID=MS.gene23078.t1.exon2;Parent=MS.gene23078.t1
chr7.2 CDS 7404122 7404237 7404122 ID=cds.MS.gene23078.t1;Parent=MS.gene23078.t1
chr7.2 exon 7403803 7403911 7403803 ID=MS.gene23078.t1.exon3;Parent=MS.gene23078.t1
chr7.2 CDS 7403803 7403911 7403803 ID=cds.MS.gene23078.t1;Parent=MS.gene23078.t1
chr7.2 exon 7403645 7403684 7403645 ID=MS.gene23078.t1.exon4;Parent=MS.gene23078.t1
chr7.2 CDS 7403645 7403684 7403645 ID=cds.MS.gene23078.t1;Parent=MS.gene23078.t1
chr7.2 exon 7403306 7403395 7403306 ID=MS.gene23078.t1.exon5;Parent=MS.gene23078.t1
chr7.2 CDS 7403306 7403395 7403306 ID=cds.MS.gene23078.t1;Parent=MS.gene23078.t1
chr7.2 exon 7403097 7403196 7403097 ID=MS.gene23078.t1.exon6;Parent=MS.gene23078.t1
chr7.2 CDS 7403097 7403196 7403097 ID=cds.MS.gene23078.t1;Parent=MS.gene23078.t1
chr7.2 exon 7402841 7402980 7402841 ID=MS.gene23078.t1.exon7;Parent=MS.gene23078.t1
chr7.2 CDS 7402841 7402980 7402841 ID=cds.MS.gene23078.t1;Parent=MS.gene23078.t1
chr7.2 exon 7402467 7402569 7402467 ID=MS.gene23078.t1.exon8;Parent=MS.gene23078.t1
chr7.2 CDS 7402467 7402569 7402467 ID=cds.MS.gene23078.t1;Parent=MS.gene23078.t1
chr7.2 exon 7401348 7402368 7401348 ID=MS.gene23078.t1.exon9;Parent=MS.gene23078.t1
chr7.2 CDS 7401348 7402368 7401348 ID=cds.MS.gene23078.t1;Parent=MS.gene23078.t1
chr7.2 exon 7401015 7401040 7401015 ID=MS.gene23078.t1.exon10;Parent=MS.gene23078.t1
chr7.2 CDS 7401015 7401040 7401015 ID=cds.MS.gene23078.t1;Parent=MS.gene23078.t1
Gene Sequence

>MS.gene23078

ATGGACAAAAGGAAAAATATTGTGCAATATAGGGAGAGGTTGGATAACACTCTTACCTCATTTGATCTTACAAATTATGAGAAACTCAAAACTCTTGTCAAAAGTCAACTCCATCGTTCTTCACAATCAGAGATGGAATTGGAAGGTATATATGATTTGAGCTTGTTCTGGAAGAAATATATGTTACCACTAGTATCATGAGTTTATCTATTTCTTTTTTTGTTGCAGGATATGAGGAGAAACTAGAAATTAAGACTGCTGAGTTATCAAACTTTCTTGATATGATGAGAAGTGCTTCTGCAGATGAAAGTGGAGGATTTAGCACATCAAGGACTGATTGGAAAGTAGGCTATCTACTCTATAATTTTGACCAAGTTTTGTTTTATTTTTATCCAATTGATAACTTCATTTCAGAAGGGGAAAAAATTCAATGGACCAATGCAATCTTGTGTAACAATTGTGTTCTGAAGTCTAATTTTGCTTTCATCATTAGATACATGAATTTTTCAATTAAATTCTCAAGACAATTTTGATCATTTTTCTTCTTTCGACAGTTAAAACAGGATAATGAGGAATTCCGCGTTATGTATCGGGAAGGACCAGAGGGAACTCCCTATAATACATTGCTTATTGAAGGCTATGTAGATGGACCTGTTGATGTTGGTCAGTCGCATTAAATCAGTCAATTTTTTTTAGCATCACCCTTTTTAAGTTTAACAACAAATACCATATTATATATTTTGACATGTGAAATTCTAATGAGTTATTTTGTTGATGACAGCTTTATGCGTCTCATGGGAATCATCCCTTTATAAGAAATGGTGAGAATCATCATGATCATTAAGATGATGTACTTTCAGTTTTCTTCGTATTTGTCTCATAATGACATGACATTGAAAACTAATGTAATTTATTTTTTCACTCATGAATATCTATGTAAGGGTGGAAATTAGAACAATTAATGAAAATTATGGCTACCAGACACCAACTGATATTATTAAGCACACAAATTAATTTGAATCTAAGTGATACTTGATAAAATAACCTTTATCACAATTTTCATTTCTCAGGTGGCCACAGTTTACTGTTCCTACTTTCAAAGTTACTGCATCTGATTGTTTGCAGAAGGTCCAGACTGGAGAACAAATAGCACTAATAAGGTTTGTATTGCAAGCAACAATTGAAAAAAGTATCCCATTTTAATCTCACTCGCCATATTAAACGCCTTCACTTTTGAATGCTTATATTGTTCCATATTTTGTAAGAAAGGATGAAGCCTCCATGGCCACTGTCTACAAGGGAGGCTGTAGCGCATTATTATCTGTTTGAGTACATTCAAGATGACTTGATAGTAGTTCTTTTGAAAACGGTACTCACCTCGATCTTTTTTTCTGTTTCTTTTTTCTTTTCTTTTCTTTCTGTAGAAAGTTAACTATGAAGTATTATCTTTATGTTTTAAGAAATTTATGCTTAATTTTATCTCAGGTCACTGAGTCAGAGAAAATTAATGAGACTATTGATGGCTTCAGCAATGATGTGATTCCTGAAGCAAAGGGTGTTGTGAGAATTGATTTGTTGGGAGGTTATGTTATACAAAAGGTGACATCTGAAAGAAGTTATTTCCGGTGAGTTTTTTTAAGTGAGTACTCAAACATTAGTAGTAGCTTGGAAGGATTTTATATCATTTGTTGATTGGAAAATGTTAGTATATAAGTTATGTTAGAAATTTCTCTTTCATTGGGTTTGAACCTTGGTTATTTAACTTCTTCGGATAGATAATTTTTATCGTTGATTTTGCAAATAGCTGCTTTTTGCCAATAAGTAATATTTTGTTTCATGGAAAATTATGATCGAGTATTGTAATGTATTTTAATTATTTTTTGTCAAATTTTGTAGGGCAATAGGGAATTTGGATATCAAGCTGGATTTTATGCCTCCATCCCTTATAAATTTCATTTCAAGGCAACTTATTGGCAGTGGTTTCAGACTTTATCAGAAGGTTGTACATTCTTTTCAGATATGTTTCTTTTAAAAACTATATTTGTAAGTTCTTTTTTATCATTTTCTGACACTAACCAGCCCTTGGTGTTGTTATAGGCTGTAGCTTCTAAGATGAACGGCGACAAAGAATTCGGCAAGGCCTTGACTGACTTGTTGTATGTTAGAATTCGTGAAGCTCTATACAATACCGATGAATCAAATGCTATGGATGAGGACGAGCTTAAGCAAGTTGCAAGCATTTTTCCTGCTGAAGAGCTTAGTCAAAGTAAGCAAGATTGGGTGAAAAATATGTCTCAGGAGGATAGAAGCAACCAAAATGCAAATAATTACAATGGTGAGATTTTAGATACAGGTAGTGAAGAGATTGTACAAAGTGAGAAGGATTTCAAGAAAGTGCATGACATTTCAACCGAGGAAGGTGATACATCTTTTGTACTACATGGCAGTAGGAATTGTGAGATTGTCAATGCAGACAGTGAAGAGATTGTAGAAGAAAATATTGAAGAGATTGTACAAATTGAGAAGGATGTCAAGAAAGTACACGACATTCCATTTGAGGAAAGCAATACATCTTTTGTACTAAAAGGAAATAGTAACTGTGAGATTGTAGATGCAGATAGAGAAGAGATTGCAGAAGCAGATATTGGAGAGATTGTACAAATTGAAAAGAATGTAAAGAAAGTAAATGACATTTCAGTCGGGGAAGTTGATACATCTATTGTGCTAAAGGGCCAAAAGAATTGTGAGATTGTCGACGCAGATAGTGAAGCGACCATAGAAGCAAATATTGAAGATATTGTACAAATTGAAAAGGATGTGAATAAAGAACATGACGTTTCAATTGAATATGATAATATAAGAGGTGTATTGAAGAGAAAGAGTAATGTATATATCAGCTCAAATGTAAAACAGGCTTTAGAAACATTAGAAAGGGCTATTTCATCAGTTCAGAAATACGGATTTCGTTCACGCAGGTTCTCTTTTAGCTTTGTTAATGATGAGACAAGCTGCAAAGAAAAAGACGACAAAGAGTATCCGTATTCTGCAAAACTTGTTCAGCCATCTGTTGAAAATGATGTCAGTGCCAAAGGACCAAGCAGCAACATACTACGGGAAAGTTTAGATGATCTCGAAATCCAAAACTTCAGGTAAGTCTAACTCCACCTCACAAAACTGCTTTGTAAGGTGAGGATTGTTTCCCATTTATAATCAGTGCTTAGACTATATTGCTATACAATGTGAGATTCTTGAATGGTTATTTAGACGAATAATTACAAAAATTATGGTTATTTAGACGAACAATCACGAAAATTATGTTTATATATATTGTTACATATGATTGTTTGGAAATATTAGGCAAGTATCAGAAAATGTAGTTTACAATATATTTGATTGACACTTTTATTTCCTTTCGGTTCATTCAGGCACACAGGAGCAGATCTTAGCATGA

Protein sequence

>MS.gene23078.t1

MDKRKNIVQYRERLDNTLTSFDLTNYEKLKTLVKSQLHRSSQSEMELEGYEEKLEIKTAELSNFLDMMRSASADESGGFSTSRTDWKLKQDNEEFRVMYREGPEGTPYNTLLIEGYVDGPVDVALCVSWESSLYKKWWPQFTVPTFKVTASDCLQKVQTGEQIALIRMKPPWPLSTREAVAHYYLFEYIQDDLIVVLLKTVTESEKINETIDGFSNDVIPEAKGVVRIDLLGGYVIQKVTSERSYFRAIGNLDIKLDFMPPSLINFISRQLIGSGFRLYQKAVASKMNGDKEFGKALTDLLYVRIREALYNTDESNAMDEDELKQVASIFPAEELSQSKQDWVKNMSQEDRSNQNANNYNGEILDTGSEEIVQSEKDFKKVHDISTEEGDTSFVLHGSRNCEIVNADSEEIVEENIEEIVQIEKDVKKVHDIPFEESNTSFVLKGNSNCEIVDADREEIAEADIGEIVQIEKNVKKVNDISVGEVDTSIVLKGQKNCEIVDADSEATIEANIEDIVQIEKDVNKEHDVSIEYDNIRGVLKRKSNVYISSNVKQALETLERAISSVQKYGFRSRRFSFSFVNDETSCKEKDDKEYPYSAKLVQPSVENDVSAKGPSSNILRESTQEQILA