Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23164.t1 | XP_003622748.2 | 91.2 | 136 | 12 | 0 | 1 | 136 | 343 | 478 | 3.30E-67 | 264.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23164.t1 | Q1XH05 | 42.7 | 143 | 73 | 3 | 1 | 136 | 352 | 492 | 1.6e-22 | 107.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23164.t1 | G7KXY9 | 91.2 | 136 | 12 | 0 | 1 | 136 | 339 | 474 | 2.4e-67 | 264.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050670 | MS.gene23164 | 0.803551 | 3.30E-49 | -1.69E-46 |
| MS.gene051255 | MS.gene23164 | 0.857526 | 1.54E-62 | -1.69E-46 |
| MS.gene051360 | MS.gene23164 | 0.809724 | 1.64E-50 | -1.69E-46 |
| MS.gene051387 | MS.gene23164 | 0.812158 | 4.88E-51 | -1.69E-46 |
| MS.gene051525 | MS.gene23164 | 0.818879 | 1.56E-52 | -1.69E-46 |
| MS.gene052011 | MS.gene23164 | -0.808044 | 3.76E-50 | -1.69E-46 |
| MS.gene052253 | MS.gene23164 | 0.819213 | 1.31E-52 | -1.69E-46 |
| MS.gene052999 | MS.gene23164 | 0.807736 | 4.37E-50 | -1.69E-46 |
| MS.gene053169 | MS.gene23164 | 0.831877 | 1.30E-55 | -1.69E-46 |
| MS.gene053758 | MS.gene23164 | 0.802338 | 5.88E-49 | -1.69E-46 |
| MS.gene054010 | MS.gene23164 | 0.813003 | 3.19E-51 | -1.69E-46 |
| MS.gene054011 | MS.gene23164 | 0.804592 | 2.01E-49 | -1.69E-46 |
| MS.gene054012 | MS.gene23164 | 0.80072 | 1.26E-48 | -1.69E-46 |
| MS.gene054183 | MS.gene23164 | 0.812699 | 3.72E-51 | -1.69E-46 |
| MS.gene054486 | MS.gene23164 | 0.814936 | 1.19E-51 | -1.69E-46 |
| MS.gene054556 | MS.gene23164 | 0.837056 | 6.51E-57 | -1.69E-46 |
| MS.gene055369 | MS.gene23164 | 0.81748 | 3.23E-52 | -1.69E-46 |
| MS.gene055666 | MS.gene23164 | 0.834653 | 2.65E-56 | -1.69E-46 |
| MS.gene055909 | MS.gene23164 | 0.815917 | 7.23E-52 | -1.69E-46 |
| MS.gene055911 | MS.gene23164 | 0.819361 | 1.21E-52 | -1.69E-46 |
| MS.gene05594 | MS.gene23164 | 0.805504 | 1.29E-49 | -1.69E-46 |
| MS.gene056191 | MS.gene23164 | 0.814693 | 1.35E-51 | -1.69E-46 |
| MS.gene056346 | MS.gene23164 | 0.837574 | 4.80E-57 | -1.69E-46 |
| MS.gene056902 | MS.gene23164 | 0.815178 | 1.06E-51 | -1.69E-46 |
| MS.gene057469 | MS.gene23164 | 0.802335 | 5.89E-49 | -1.69E-46 |
| MS.gene057749 | MS.gene23164 | 0.813328 | 2.71E-51 | -1.69E-46 |
| MS.gene057823 | MS.gene23164 | 0.814671 | 1.37E-51 | -1.69E-46 |
| MS.gene058700 | MS.gene23164 | 0.806268 | 8.93E-50 | -1.69E-46 |
| MS.gene05886 | MS.gene23164 | 0.812501 | 4.11E-51 | -1.69E-46 |
| MS.gene058995 | MS.gene23164 | 0.807894 | 4.04E-50 | -1.69E-46 |
| MS.gene05907 | MS.gene23164 | 0.813589 | 2.37E-51 | -1.69E-46 |
| MS.gene059420 | MS.gene23164 | 0.839378 | 1.64E-57 | -1.69E-46 |
| MS.gene060837 | MS.gene23164 | 0.816213 | 6.21E-52 | -1.69E-46 |
| MS.gene061154 | MS.gene23164 | 0.80739 | 5.17E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23164.t1 | MTR_7g051650 | 91.176 | 136 | 12 | 0 | 1 | 136 | 339 | 474 | 2.60e-87 | 264 |
| MS.gene23164.t1 | MTR_7g051650 | 91.176 | 136 | 12 | 0 | 1 | 136 | 343 | 478 | 3.50e-87 | 264 |
| MS.gene23164.t1 | MTR_7g056747 | 77.941 | 136 | 15 | 1 | 1 | 136 | 223 | 343 | 2.29e-70 | 217 |
| MS.gene23164.t1 | MTR_7g051510 | 77.941 | 136 | 29 | 1 | 1 | 136 | 343 | 477 | 6.97e-70 | 219 |
| MS.gene23164.t1 | MTR_7g051610 | 77.941 | 136 | 29 | 1 | 1 | 136 | 343 | 477 | 1.29e-69 | 218 |
| MS.gene23164.t1 | MTR_7g033860 | 69.118 | 136 | 42 | 0 | 1 | 136 | 322 | 457 | 7.76e-60 | 192 |
| MS.gene23164.t1 | MTR_0108s0030 | 56.618 | 136 | 40 | 1 | 1 | 136 | 278 | 394 | 9.50e-45 | 152 |
| MS.gene23164.t1 | MTR_4g066210 | 42.958 | 142 | 75 | 2 | 1 | 137 | 324 | 464 | 6.38e-27 | 104 |
| MS.gene23164.t1 | MTR_2g098540 | 42.254 | 142 | 76 | 2 | 1 | 137 | 268 | 408 | 2.88e-24 | 97.1 |
| MS.gene23164.t1 | MTR_2g098540 | 42.254 | 142 | 76 | 2 | 1 | 137 | 312 | 452 | 3.85e-24 | 96.7 |
| MS.gene23164.t1 | MTR_2g098520 | 42.254 | 142 | 76 | 2 | 1 | 137 | 315 | 455 | 4.87e-24 | 96.7 |
| MS.gene23164.t1 | MTR_6g078330 | 39.310 | 145 | 76 | 3 | 1 | 137 | 214 | 354 | 1.08e-23 | 95.1 |
| MS.gene23164.t1 | MTR_6g078330 | 39.310 | 145 | 76 | 3 | 1 | 137 | 214 | 354 | 1.15e-23 | 95.1 |
| MS.gene23164.t1 | MTR_6g078330 | 39.310 | 145 | 76 | 3 | 1 | 137 | 318 | 458 | 1.91e-23 | 94.7 |
| MS.gene23164.t1 | MTR_4g066590 | 41.497 | 147 | 76 | 3 | 1 | 138 | 314 | 459 | 2.52e-23 | 94.4 |
| MS.gene23164.t1 | MTR_5g071520 | 38.462 | 143 | 82 | 2 | 1 | 138 | 329 | 470 | 2.98e-23 | 94.4 |
| MS.gene23164.t1 | MTR_2g098790 | 41.096 | 146 | 72 | 3 | 1 | 137 | 319 | 459 | 3.01e-23 | 94.4 |
| MS.gene23164.t1 | MTR_6g078380 | 41.958 | 143 | 76 | 3 | 1 | 137 | 317 | 458 | 3.54e-23 | 94.0 |
| MS.gene23164.t1 | MTR_4g066630 | 41.791 | 134 | 72 | 2 | 1 | 129 | 320 | 452 | 4.04e-23 | 93.6 |
| MS.gene23164.t1 | MTR_6g078450 | 39.161 | 143 | 79 | 3 | 1 | 137 | 317 | 457 | 4.36e-23 | 93.6 |
| MS.gene23164.t1 | MTR_6g078450 | 39.161 | 143 | 79 | 3 | 1 | 137 | 317 | 457 | 5.30e-23 | 93.6 |
| MS.gene23164.t1 | MTR_4g066630 | 41.791 | 134 | 72 | 2 | 1 | 129 | 320 | 452 | 5.52e-23 | 93.6 |
| MS.gene23164.t1 | MTR_3g028720 | 40.141 | 142 | 79 | 2 | 1 | 137 | 319 | 459 | 6.88e-23 | 93.2 |
| MS.gene23164.t1 | MTR_3g028720 | 40.141 | 142 | 79 | 2 | 1 | 137 | 319 | 459 | 9.38e-23 | 92.8 |
| MS.gene23164.t1 | MTR_4g066240 | 39.437 | 142 | 80 | 2 | 1 | 137 | 317 | 457 | 2.17e-22 | 92.0 |
| MS.gene23164.t1 | MTR_4g066340 | 38.732 | 142 | 81 | 2 | 1 | 137 | 244 | 384 | 3.07e-22 | 91.3 |
| MS.gene23164.t1 | MTR_4g066240 | 39.716 | 141 | 79 | 2 | 1 | 136 | 317 | 456 | 4.20e-22 | 90.9 |
| MS.gene23164.t1 | MTR_4g066640 | 39.860 | 143 | 80 | 2 | 1 | 138 | 318 | 459 | 6.46e-22 | 90.5 |
| MS.gene23164.t1 | MTR_4g066580 | 39.437 | 142 | 80 | 2 | 1 | 137 | 320 | 460 | 1.74e-21 | 89.4 |
| MS.gene23164.t1 | MTR_4g066630 | 45.283 | 106 | 57 | 1 | 1 | 106 | 320 | 424 | 2.55e-20 | 85.9 |
| MS.gene23164.t1 | MTR_4g066240 | 44.340 | 106 | 58 | 1 | 1 | 106 | 317 | 421 | 3.50e-20 | 85.5 |
| MS.gene23164.t1 | MTR_4g066280 | 35.664 | 143 | 86 | 2 | 1 | 137 | 296 | 438 | 4.18e-20 | 85.5 |
| MS.gene23164.t1 | MTR_3g028720 | 46.226 | 106 | 56 | 1 | 1 | 106 | 319 | 423 | 5.12e-20 | 84.7 |
| MS.gene23164.t1 | MTR_4g066330 | 37.762 | 143 | 83 | 2 | 1 | 137 | 296 | 438 | 6.12e-20 | 84.7 |
| MS.gene23164.t1 | MTR_4g066580 | 46.226 | 106 | 56 | 1 | 1 | 106 | 320 | 424 | 6.96e-20 | 84.7 |
| MS.gene23164.t1 | MTR_5g044000 | 35.417 | 144 | 85 | 3 | 1 | 137 | 324 | 466 | 4.18e-19 | 82.4 |
| MS.gene23164.t1 | MTR_2g043200 | 39.437 | 142 | 69 | 6 | 9 | 137 | 327 | 464 | 1.02e-18 | 81.6 |
| MS.gene23164.t1 | MTR_4g083000 | 33.103 | 145 | 87 | 3 | 1 | 137 | 306 | 448 | 2.17e-18 | 80.5 |
| MS.gene23164.t1 | MTR_4g083000 | 33.793 | 145 | 86 | 3 | 1 | 137 | 212 | 354 | 4.46e-18 | 79.3 |
| MS.gene23164.t1 | MTR_3g026620 | 36.620 | 142 | 83 | 4 | 1 | 137 | 316 | 455 | 4.93e-17 | 76.6 |
| MS.gene23164.t1 | MTR_4g015460 | 34.211 | 152 | 83 | 6 | 5 | 139 | 300 | 451 | 7.52e-17 | 76.3 |
| MS.gene23164.t1 | MTR_4g081530 | 33.566 | 143 | 89 | 2 | 1 | 137 | 302 | 444 | 2.97e-16 | 74.3 |
| MS.gene23164.t1 | MTR_3g026280 | 33.566 | 143 | 82 | 4 | 1 | 137 | 303 | 438 | 6.36e-16 | 73.6 |
| MS.gene23164.t1 | MTR_3g026400 | 37.838 | 111 | 65 | 3 | 1 | 110 | 315 | 422 | 8.94e-16 | 73.2 |
| MS.gene23164.t1 | MTR_3g026400 | 37.838 | 111 | 65 | 3 | 1 | 110 | 284 | 391 | 8.95e-16 | 73.2 |
| MS.gene23164.t1 | MTR_2g022760 | 33.108 | 148 | 83 | 3 | 1 | 137 | 315 | 457 | 4.70e-15 | 70.9 |
| MS.gene23164.t1 | MTR_2g022760 | 33.108 | 148 | 83 | 3 | 1 | 137 | 212 | 354 | 4.90e-15 | 70.9 |
| MS.gene23164.t1 | MTR_3g033790 | 32.867 | 143 | 86 | 4 | 1 | 137 | 288 | 426 | 4.95e-15 | 70.9 |
| MS.gene23164.t1 | MTR_4g023000 | 35.938 | 128 | 75 | 5 | 5 | 129 | 308 | 431 | 1.67e-14 | 69.3 |
| MS.gene23164.t1 | MTR_0110s0030 | 31.655 | 139 | 91 | 2 | 1 | 136 | 320 | 457 | 4.25e-14 | 68.2 |
| MS.gene23164.t1 | MTR_4g131800 | 29.730 | 148 | 88 | 3 | 1 | 137 | 794 | 936 | 1.40e-13 | 67.0 |
| MS.gene23164.t1 | MTR_0110s0040 | 30.935 | 139 | 92 | 2 | 1 | 136 | 320 | 457 | 2.94e-13 | 65.9 |
| MS.gene23164.t1 | MTR_2g079580 | 34.247 | 146 | 79 | 5 | 1 | 133 | 310 | 451 | 3.49e-13 | 65.5 |
| MS.gene23164.t1 | MTR_3g033810 | 31.469 | 143 | 89 | 4 | 1 | 137 | 290 | 429 | 3.57e-13 | 65.5 |
| MS.gene23164.t1 | MTR_2g079550 | 33.775 | 151 | 83 | 5 | 1 | 138 | 308 | 454 | 3.59e-13 | 65.5 |
| MS.gene23164.t1 | MTR_4g067040 | 41.489 | 94 | 54 | 1 | 1 | 94 | 315 | 407 | 6.08e-13 | 64.7 |
| MS.gene23164.t1 | MTR_4g131810 | 30.345 | 145 | 91 | 3 | 1 | 137 | 309 | 451 | 8.62e-13 | 64.3 |
| MS.gene23164.t1 | MTR_4g015420 | 32.653 | 147 | 82 | 4 | 7 | 137 | 325 | 470 | 1.78e-12 | 63.5 |
| MS.gene23164.t1 | MTR_2g079580 | 37.273 | 110 | 61 | 3 | 1 | 106 | 310 | 415 | 1.98e-12 | 63.5 |
| MS.gene23164.t1 | MTR_7g068900 | 34.307 | 137 | 85 | 3 | 1 | 137 | 233 | 364 | 5.55e-12 | 62.0 |
| MS.gene23164.t1 | MTR_2g022710 | 27.397 | 146 | 94 | 3 | 1 | 137 | 313 | 455 | 6.34e-11 | 59.3 |
| MS.gene23164.t1 | MTR_2g022710 | 27.397 | 146 | 94 | 3 | 1 | 137 | 212 | 354 | 6.42e-11 | 58.9 |
| MS.gene23164.t1 | MTR_2g022710 | 27.397 | 146 | 94 | 3 | 1 | 137 | 313 | 455 | 6.48e-11 | 58.9 |
| MS.gene23164.t1 | MTR_2g022710 | 27.397 | 146 | 94 | 3 | 1 | 137 | 313 | 455 | 6.85e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23164.t1 | AT2G44490 | 37.415 | 147 | 77 | 3 | 1 | 136 | 295 | 437 | 1.20e-20 | 87.0 |
| MS.gene23164.t1 | AT2G44480 | 36.029 | 136 | 81 | 2 | 1 | 131 | 109 | 243 | 6.06e-20 | 83.6 |
| MS.gene23164.t1 | AT5G25980 | 37.324 | 142 | 82 | 4 | 1 | 137 | 328 | 467 | 7.48e-20 | 84.7 |
| MS.gene23164.t1 | AT5G25980 | 37.324 | 142 | 82 | 4 | 1 | 137 | 328 | 467 | 7.48e-20 | 84.7 |
| MS.gene23164.t1 | AT5G25980 | 37.324 | 142 | 82 | 4 | 1 | 137 | 328 | 467 | 9.62e-20 | 84.3 |
| MS.gene23164.t1 | AT2G44480 | 36.029 | 136 | 81 | 2 | 1 | 131 | 213 | 347 | 1.13e-19 | 84.0 |
| MS.gene23164.t1 | AT2G44480 | 36.029 | 136 | 81 | 2 | 1 | 131 | 346 | 480 | 1.46e-19 | 84.0 |
| MS.gene23164.t1 | AT2G44480 | 36.029 | 136 | 81 | 2 | 1 | 131 | 315 | 449 | 1.54e-19 | 84.0 |
| MS.gene23164.t1 | AT2G44460 | 35.172 | 145 | 81 | 3 | 1 | 136 | 309 | 449 | 1.64e-19 | 84.0 |
| MS.gene23164.t1 | AT2G44460 | 35.172 | 145 | 81 | 3 | 1 | 136 | 163 | 303 | 1.77e-19 | 83.6 |
| MS.gene23164.t1 | AT2G44450 | 38.235 | 136 | 81 | 2 | 5 | 139 | 165 | 298 | 2.41e-19 | 82.8 |
| MS.gene23164.t1 | AT1G51470 | 35.570 | 149 | 72 | 5 | 1 | 137 | 320 | 456 | 5.07e-19 | 82.4 |
| MS.gene23164.t1 | AT2G44450 | 38.519 | 135 | 80 | 2 | 5 | 138 | 316 | 448 | 5.89e-19 | 82.0 |
| MS.gene23164.t1 | AT1G26560 | 33.793 | 145 | 86 | 3 | 1 | 137 | 310 | 452 | 7.85e-19 | 81.6 |
| MS.gene23164.t1 | AT3G60130 | 37.778 | 135 | 77 | 3 | 8 | 139 | 267 | 397 | 9.28e-19 | 81.6 |
| MS.gene23164.t1 | AT1G47600 | 34.459 | 148 | 74 | 5 | 1 | 137 | 320 | 455 | 1.08e-18 | 81.3 |
| MS.gene23164.t1 | AT3G60130 | 37.778 | 135 | 77 | 3 | 8 | 139 | 319 | 449 | 1.32e-18 | 81.3 |
| MS.gene23164.t1 | AT1G47600 | 34.228 | 149 | 74 | 5 | 1 | 137 | 320 | 456 | 1.45e-18 | 81.3 |
| MS.gene23164.t1 | AT2G44470 | 34.483 | 145 | 82 | 3 | 1 | 136 | 310 | 450 | 1.91e-18 | 80.5 |
| MS.gene23164.t1 | AT1G66280 | 41.509 | 106 | 62 | 0 | 1 | 106 | 315 | 420 | 2.14e-18 | 80.5 |
| MS.gene23164.t1 | AT1G75940 | 36.879 | 141 | 72 | 3 | 1 | 129 | 320 | 455 | 2.17e-18 | 80.5 |
| MS.gene23164.t1 | AT5G44640 | 36.842 | 133 | 81 | 2 | 8 | 139 | 320 | 450 | 2.35e-18 | 80.5 |
| MS.gene23164.t1 | AT2G44470 | 34.483 | 145 | 82 | 3 | 1 | 136 | 310 | 450 | 2.52e-18 | 80.5 |
| MS.gene23164.t1 | AT5G48375 | 41.818 | 110 | 54 | 3 | 1 | 106 | 285 | 388 | 2.92e-18 | 80.1 |
| MS.gene23164.t1 | AT3G60120 | 34.722 | 144 | 85 | 3 | 1 | 137 | 294 | 435 | 4.92e-18 | 79.7 |
| MS.gene23164.t1 | AT5G42260 | 36.296 | 135 | 83 | 2 | 6 | 139 | 318 | 450 | 5.97e-18 | 79.3 |
| MS.gene23164.t1 | AT5G26000 | 35.811 | 148 | 76 | 5 | 1 | 137 | 317 | 456 | 1.39e-17 | 78.2 |
| MS.gene23164.t1 | AT5G26000 | 35.811 | 148 | 76 | 5 | 1 | 137 | 317 | 456 | 1.89e-17 | 77.8 |
| MS.gene23164.t1 | AT5G16580 | 36.232 | 138 | 81 | 4 | 1 | 137 | 158 | 289 | 3.92e-17 | 75.9 |
| MS.gene23164.t1 | AT4G21760 | 33.103 | 145 | 82 | 3 | 1 | 137 | 332 | 469 | 4.86e-17 | 76.6 |
| MS.gene23164.t1 | AT1G66270 | 33.333 | 144 | 91 | 1 | 1 | 139 | 313 | 456 | 6.24e-17 | 76.3 |
| MS.gene23164.t1 | AT1G66270 | 33.333 | 144 | 91 | 1 | 1 | 139 | 315 | 458 | 6.25e-17 | 76.3 |
| MS.gene23164.t1 | AT3G60130 | 37.037 | 135 | 67 | 4 | 8 | 139 | 267 | 386 | 7.25e-17 | 76.3 |
| MS.gene23164.t1 | AT3G09260 | 31.757 | 148 | 88 | 3 | 1 | 139 | 315 | 458 | 7.58e-17 | 76.3 |
| MS.gene23164.t1 | AT1G52400 | 36.232 | 138 | 75 | 3 | 1 | 129 | 320 | 453 | 8.02e-17 | 75.9 |
| MS.gene23164.t1 | AT1G52400 | 36.232 | 138 | 75 | 3 | 1 | 129 | 320 | 453 | 1.18e-16 | 75.5 |
| MS.gene23164.t1 | AT1G52400 | 36.232 | 138 | 75 | 3 | 1 | 129 | 320 | 453 | 1.18e-16 | 75.5 |
| MS.gene23164.t1 | AT5G24540 | 35.211 | 142 | 78 | 4 | 5 | 136 | 317 | 454 | 1.30e-16 | 75.5 |
| MS.gene23164.t1 | AT3G21370 | 36.242 | 149 | 85 | 3 | 1 | 139 | 314 | 462 | 1.33e-16 | 75.5 |
| MS.gene23164.t1 | AT5G24540 | 35.211 | 142 | 78 | 4 | 5 | 136 | 317 | 454 | 1.33e-16 | 75.5 |
| MS.gene23164.t1 | AT3G03640 | 34.694 | 147 | 88 | 2 | 1 | 139 | 317 | 463 | 1.37e-16 | 75.5 |
| MS.gene23164.t1 | AT3G60140 | 35.849 | 106 | 68 | 0 | 1 | 106 | 307 | 412 | 1.81e-16 | 75.1 |
| MS.gene23164.t1 | AT3G60140 | 36.449 | 107 | 68 | 0 | 1 | 107 | 307 | 413 | 2.10e-16 | 75.1 |
| MS.gene23164.t1 | AT4G27830 | 33.813 | 139 | 82 | 3 | 1 | 137 | 300 | 430 | 2.68e-16 | 74.7 |
| MS.gene23164.t1 | AT5G28510 | 35.664 | 143 | 83 | 3 | 1 | 136 | 324 | 464 | 2.82e-16 | 74.7 |
| MS.gene23164.t1 | AT5G24550 | 34.932 | 146 | 81 | 4 | 1 | 136 | 313 | 454 | 4.57e-16 | 73.9 |
| MS.gene23164.t1 | AT5G36890 | 35.211 | 142 | 82 | 5 | 1 | 134 | 285 | 424 | 1.21e-15 | 72.8 |
| MS.gene23164.t1 | AT5G36890 | 35.211 | 142 | 82 | 5 | 1 | 134 | 285 | 424 | 1.27e-15 | 72.8 |
| MS.gene23164.t1 | AT4G27830 | 33.813 | 139 | 82 | 3 | 1 | 137 | 212 | 342 | 1.45e-15 | 72.4 |
| MS.gene23164.t1 | AT4G27820 | 31.788 | 151 | 70 | 5 | 1 | 137 | 212 | 343 | 2.56e-15 | 71.6 |
| MS.gene23164.t1 | AT4G27820 | 31.788 | 151 | 70 | 5 | 1 | 137 | 212 | 343 | 2.56e-15 | 71.6 |
| MS.gene23164.t1 | AT3G62750 | 33.094 | 139 | 84 | 3 | 1 | 137 | 203 | 334 | 3.47e-15 | 71.2 |
| MS.gene23164.t1 | AT3G62750 | 33.094 | 139 | 84 | 3 | 1 | 137 | 203 | 334 | 3.47e-15 | 71.2 |
| MS.gene23164.t1 | AT4G27820 | 31.788 | 151 | 70 | 5 | 1 | 137 | 297 | 428 | 3.62e-15 | 71.2 |
| MS.gene23164.t1 | AT3G62750 | 33.094 | 139 | 84 | 3 | 1 | 137 | 288 | 419 | 3.90e-15 | 71.2 |
| MS.gene23164.t1 | AT3G62750 | 33.094 | 139 | 84 | 3 | 1 | 137 | 314 | 445 | 4.18e-15 | 71.2 |
| MS.gene23164.t1 | AT3G62750 | 33.094 | 139 | 84 | 3 | 1 | 137 | 314 | 445 | 4.57e-15 | 70.9 |
| MS.gene23164.t1 | AT3G62740 | 31.387 | 137 | 86 | 3 | 1 | 136 | 294 | 423 | 2.32e-14 | 68.9 |
| MS.gene23164.t1 | AT4G22100 | 34.532 | 139 | 84 | 4 | 1 | 137 | 295 | 428 | 2.93e-14 | 68.9 |
| MS.gene23164.t1 | AT3G62740 | 31.387 | 137 | 86 | 3 | 1 | 136 | 294 | 423 | 6.10e-14 | 67.8 |
| MS.gene23164.t1 | AT2G25630 | 34.074 | 135 | 69 | 4 | 6 | 139 | 317 | 432 | 9.65e-14 | 67.4 |
| MS.gene23164.t1 | AT5G54570 | 30.345 | 145 | 91 | 3 | 1 | 137 | 309 | 451 | 1.07e-13 | 67.0 |
| MS.gene23164.t1 | AT4G21760 | 31.469 | 143 | 77 | 3 | 1 | 137 | 332 | 459 | 1.12e-13 | 67.0 |
| MS.gene23164.t1 | AT5G54570 | 30.345 | 145 | 91 | 3 | 1 | 137 | 212 | 354 | 1.13e-13 | 67.0 |
| MS.gene23164.t1 | AT5G54570 | 30.345 | 145 | 91 | 3 | 1 | 137 | 309 | 451 | 1.34e-13 | 67.0 |
| MS.gene23164.t1 | AT3G18070 | 33.628 | 113 | 63 | 3 | 1 | 107 | 116 | 222 | 3.45e-12 | 61.6 |
| MS.gene23164.t1 | AT3G18080 | 32.331 | 133 | 75 | 4 | 1 | 124 | 316 | 442 | 4.35e-12 | 62.4 |
| MS.gene23164.t1 | AT3G18070 | 33.628 | 113 | 63 | 3 | 1 | 107 | 228 | 334 | 7.13e-12 | 61.6 |
| MS.gene23164.t1 | AT1G02850 | 31.387 | 137 | 87 | 4 | 1 | 137 | 325 | 454 | 1.17e-11 | 61.2 |
| MS.gene23164.t1 | AT1G02850 | 31.387 | 137 | 87 | 4 | 1 | 137 | 275 | 404 | 1.27e-11 | 61.2 |
| MS.gene23164.t1 | AT1G02850 | 32.824 | 131 | 81 | 4 | 1 | 131 | 325 | 448 | 1.56e-11 | 60.8 |
| MS.gene23164.t1 | AT1G02850 | 31.387 | 137 | 87 | 4 | 1 | 137 | 302 | 431 | 1.62e-11 | 60.8 |
| MS.gene23164.t1 | AT3G18070 | 28.966 | 145 | 88 | 4 | 1 | 136 | 116 | 254 | 1.88e-11 | 60.5 |
| MS.gene23164.t1 | AT3G18070 | 28.966 | 145 | 88 | 4 | 1 | 136 | 228 | 366 | 2.47e-11 | 60.5 |
| MS.gene23164.t1 | AT3G18070 | 28.966 | 145 | 88 | 4 | 1 | 136 | 299 | 437 | 2.53e-11 | 60.5 |
| MS.gene23164.t1 | AT3G18070 | 28.966 | 145 | 88 | 4 | 1 | 136 | 305 | 443 | 2.74e-11 | 60.1 |
| MS.gene23164.t1 | AT1G45191 | 28.261 | 138 | 88 | 3 | 1 | 137 | 302 | 429 | 4.20e-11 | 59.7 |
| MS.gene23164.t1 | AT2G32860 | 29.139 | 151 | 88 | 4 | 1 | 139 | 376 | 519 | 5.01e-11 | 59.7 |
| MS.gene23164.t1 | AT1G60090 | 29.496 | 139 | 89 | 5 | 1 | 137 | 297 | 428 | 5.09e-11 | 59.3 |
Find 19 sgRNAs with CRISPR-Local
Find 44 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAATTTACATCACTGAAAA+TGG | 0.207133 | 7.2:+50921236 | MS.gene23164:CDS |
| GTAGTAATCTTAGTTCTATT+TGG | 0.238425 | 7.2:-50920742 | None:intergenic |
| TGTTCGTCTTTCAATGGATT+TGG | 0.245425 | 7.2:-50921383 | None:intergenic |
| AAAGGAAGTACAGACTTTAT+TGG | 0.307324 | 7.2:+50920682 | MS.gene23164:CDS |
| AAGGAAGTACAGACTTTATT+GGG | 0.346048 | 7.2:+50920683 | MS.gene23164:CDS |
| GTTCGTCTTTCAATGGATTT+GGG | 0.349241 | 7.2:-50921382 | None:intergenic |
| AACTTACTTAATTGTTGCTT+TGG | 0.351416 | 7.2:-50921441 | None:intergenic |
| AAGAAATTATATAATCCTTC+AGG | 0.363248 | 7.2:-50921182 | None:intergenic |
| GTTCGATGTTCGTCTTTCAA+TGG | 0.424862 | 7.2:-50921389 | None:intergenic |
| AGACATAGTTACAACCATAT+TGG | 0.442280 | 7.2:-50921157 | None:intergenic |
| AGAAATTATATAATCCTTCA+GGG | 0.548516 | 7.2:-50921181 | None:intergenic |
| AATGAGAAAGAACTGTTGAA+AGG | 0.550913 | 7.2:+50920664 | MS.gene23164:CDS |
| GATGCCTTGGCTGTTTCAGA+AGG | 0.551991 | 7.2:+50920778 | MS.gene23164:CDS |
| GGATTTGGGATATTGAAAGA+AGG | 0.554731 | 7.2:-50921368 | None:intergenic |
| AAAATAATGAGAAAGCTAGT+GGG | 0.562146 | 7.2:+50920616 | None:intergenic |
| TTTACCTTCTGAAACAGCCA+AGG | 0.602078 | 7.2:-50920782 | None:intergenic |
| TGTAACTATGTCTACCCTGA+AGG | 0.602323 | 7.2:+50921167 | MS.gene23164:CDS |
| TTTGGTAGCATTTATATGTG+CGG | 0.602905 | 7.2:-50921423 | None:intergenic |
| AAATAATGAGAAAGCTAGTG+GGG | 0.638767 | 7.2:+50920617 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTAACTTATCAAATTATA+AGG | - | chr7.2:50921480-50921499 | None:intergenic | 10.0% |
| !!! | TATCTAATTTTTATTTTCTA+AGG | + | chr7.2:50921498-50921517 | MS.gene23164:intron | 10.0% |
| !!! | TTAAGAATAATATTTTTTAG+GGG | + | chr7.2:50921051-50921070 | MS.gene23164:intron | 10.0% |
| !!! | TTTTAAATAATTGTATACAA+AGG | + | chr7.2:50920830-50920849 | MS.gene23164:intron | 10.0% |
| !!! | TAAGAATAATATTTTTTAGG+GGG | + | chr7.2:50921052-50921071 | MS.gene23164:intron | 15.0% |
| !! | AAGAAATTATATAATCCTTC+AGG | - | chr7.2:50921185-50921204 | None:intergenic | 20.0% |
| !! | AATTTAATTCGTAGAGTTTA+TGG | - | chr7.2:50920889-50920908 | None:intergenic | 20.0% |
| !! | AGAAATTATATAATCCTTCA+GGG | - | chr7.2:50921184-50921203 | None:intergenic | 20.0% |
| !!! | AAGAATAATATTTTTTAGGG+GGG | + | chr7.2:50921053-50921072 | MS.gene23164:intron | 20.0% |
| !!! | TTTCTCATTTTTAGTGAATT+CGG | - | chr7.2:50920653-50920672 | None:intergenic | 20.0% |
| ! | AAATATGTAAGAGAATCACA+AGG | + | chr7.2:50920918-50920937 | MS.gene23164:intron | 25.0% |
| ! | ACTGCAATAAAGAAAGAATA+AGG | - | chr7.2:50920974-50920993 | None:intergenic | 25.0% |
| ! | AGAATTTACATCACTGAAAA+TGG | + | chr7.2:50921236-50921255 | MS.gene23164:CDS | 25.0% |
| ! | CTTATCAAATTATAAGGATG+TGG | - | chr7.2:50921474-50921493 | None:intergenic | 25.0% |
| !! | AACTTACTTAATTGTTGCTT+TGG | - | chr7.2:50921444-50921463 | None:intergenic | 25.0% |
| !! | TTTTCAGTGATGTAAATTCT+TGG | - | chr7.2:50921236-50921255 | None:intergenic | 25.0% |
| !!! | GTAGTAATCTTAGTTCTATT+TGG | - | chr7.2:50920745-50920764 | None:intergenic | 25.0% |
| !!! | GTTCACTTTTGATATTTTGT+AGG | + | chr7.2:50921133-50921152 | MS.gene23164:intron | 25.0% |
| !!! | TTCTCATTTTTAGTGAATTC+GGG | - | chr7.2:50920652-50920671 | None:intergenic | 25.0% |
| AATGAGAAAGAACTGTTGAA+AGG | + | chr7.2:50920664-50920683 | MS.gene23164:CDS | 30.0% | |
| AGACATAGTTACAACCATAT+TGG | - | chr7.2:50921160-50921179 | None:intergenic | 30.0% | |
| TTTACATCACTGAAAATGGT+TGG | + | chr7.2:50921240-50921259 | MS.gene23164:intron | 30.0% | |
| ! | AAAGGAAGTACAGACTTTAT+TGG | + | chr7.2:50920682-50920701 | MS.gene23164:CDS | 30.0% |
| ! | AAGGAAGTACAGACTTTATT+GGG | + | chr7.2:50920683-50920702 | MS.gene23164:CDS | 30.0% |
| ! | GATATTTTGTAGGACCAATA+TGG | + | chr7.2:50921143-50921162 | MS.gene23164:intron | 30.0% |
| ! | TTGTTACATCCTCTTTTTGT+AGG | + | chr7.2:50921341-50921360 | MS.gene23164:intron | 30.0% |
| ! | TTTGGTAGCATTTATATGTG+CGG | - | chr7.2:50921426-50921445 | None:intergenic | 30.0% |
| !!! | CTTTATTGCAGTTTTGAATG+TGG | + | chr7.2:50920982-50921001 | MS.gene23164:intron | 30.0% |
| AATGTGGAAGGAAAAACTCT+TGG | + | chr7.2:50920998-50921017 | MS.gene23164:CDS | 35.0% | |
| GAAGGAATTCCTACAAAAAG+AGG | - | chr7.2:50921353-50921372 | None:intergenic | 35.0% | |
| ! | GGATTTGGGATATTGAAAGA+AGG | - | chr7.2:50921371-50921390 | None:intergenic | 35.0% |
| ! | GTTCGTCTTTCAATGGATTT+GGG | - | chr7.2:50921385-50921404 | None:intergenic | 35.0% |
| ! | GTTTATGGTGTCAACTTCAA+TGG | - | chr7.2:50920874-50920893 | None:intergenic | 35.0% |
| ! | TGTTCGTCTTTCAATGGATT+TGG | - | chr7.2:50921386-50921405 | None:intergenic | 35.0% |
| !! | TAGTGACAATTTTGATGCCT+TGG | + | chr7.2:50920765-50920784 | MS.gene23164:CDS | 35.0% |
| !!! | ATTGCAGTTTTGAATGTGGA+AGG | + | chr7.2:50920986-50921005 | MS.gene23164:intron | 35.0% |
| GTTCGATGTTCGTCTTTCAA+TGG | - | chr7.2:50921392-50921411 | None:intergenic | 40.0% | |
| TGTAACTATGTCTACCCTGA+AGG | + | chr7.2:50921167-50921186 | MS.gene23164:CDS | 40.0% | |
| !! | TTTACCTTCTGAAACAGCCA+AGG | - | chr7.2:50920785-50920804 | None:intergenic | 40.0% |
| !! | ATACAATTATTTAAAAAAAA+TGG | - | chr7.2:50920826-50920845 | None:intergenic | 5.0% |
| !!! | ACTTTATTATTATTATTTTT+AGG | + | chr7.2:50921079-50921098 | MS.gene23164:intron | 5.0% |
| !!! | ATTAAGAATAATATTTTTTA+GGG | + | chr7.2:50921050-50921069 | MS.gene23164:intron | 5.0% |
| !!! | TATTAAGAATAATATTTTTT+AGG | + | chr7.2:50921049-50921068 | MS.gene23164:intron | 5.0% |
| ! | GATGCCTTGGCTGTTTCAGA+AGG | + | chr7.2:50920778-50920797 | MS.gene23164:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 50920622 | 50921594 | 50920622 | ID=MS.gene23164 |
| chr7.2 | mRNA | 50920622 | 50921594 | 50920622 | ID=MS.gene23164.t1;Parent=MS.gene23164 |
| chr7.2 | exon | 50920622 | 50920799 | 50920622 | ID=MS.gene23164.t1.exon1;Parent=MS.gene23164.t1 |
| chr7.2 | CDS | 50920622 | 50920799 | 50920622 | ID=cds.MS.gene23164.t1;Parent=MS.gene23164.t1 |
| chr7.2 | exon | 50920993 | 50921027 | 50920993 | ID=MS.gene23164.t1.exon2;Parent=MS.gene23164.t1 |
| chr7.2 | CDS | 50920993 | 50921027 | 50920993 | ID=cds.MS.gene23164.t1;Parent=MS.gene23164.t1 |
| chr7.2 | exon | 50921155 | 50921257 | 50921155 | ID=MS.gene23164.t1.exon3;Parent=MS.gene23164.t1 |
| chr7.2 | CDS | 50921155 | 50921257 | 50921155 | ID=cds.MS.gene23164.t1;Parent=MS.gene23164.t1 |
| chr7.2 | exon | 50921363 | 50921456 | 50921363 | ID=MS.gene23164.t1.exon4;Parent=MS.gene23164.t1 |
| chr7.2 | CDS | 50921363 | 50921456 | 50921363 | ID=cds.MS.gene23164.t1;Parent=MS.gene23164.t1 |
| chr7.2 | exon | 50921585 | 50921594 | 50921585 | ID=MS.gene23164.t1.exon5;Parent=MS.gene23164.t1 |
| chr7.2 | CDS | 50921585 | 50921594 | 50921585 | ID=cds.MS.gene23164.t1;Parent=MS.gene23164.t1 |
| Gene Sequence |
| Protein sequence |
