Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24444.t1 | XP_003589128.1 | 96.7 | 547 | 18 | 0 | 1 | 547 | 1 | 547 | 1.90E-275 | 958 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24444.t1 | Q9S9X4 | 56.4 | 525 | 212 | 6 | 14 | 536 | 35 | 544 | 1.3e-155 | 551.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24444.t1 | Q2HTR2 | 96.7 | 547 | 18 | 0 | 1 | 547 | 1 | 547 | 1.4e-275 | 958.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene24444 | 0.80296 | 4.38E-49 | -1.69E-46 |
| MS.gene050085 | MS.gene24444 | 0.812285 | 4.58E-51 | -1.69E-46 |
| MS.gene050213 | MS.gene24444 | 0.809176 | 2.15E-50 | -1.69E-46 |
| MS.gene050359 | MS.gene24444 | 0.821348 | 4.23E-53 | -1.69E-46 |
| MS.gene050384 | MS.gene24444 | 0.813283 | 2.77E-51 | -1.69E-46 |
| MS.gene050386 | MS.gene24444 | 0.817644 | 2.96E-52 | -1.69E-46 |
| MS.gene050414 | MS.gene24444 | 0.821429 | 4.06E-53 | -1.69E-46 |
| MS.gene050646 | MS.gene24444 | 0.828301 | 9.70E-55 | -1.69E-46 |
| MS.gene050654 | MS.gene24444 | 0.835507 | 1.61E-56 | -1.69E-46 |
| MS.gene050689 | MS.gene24444 | 0.814282 | 1.67E-51 | -1.69E-46 |
| MS.gene050931 | MS.gene24444 | 0.80579 | 1.13E-49 | -1.69E-46 |
| MS.gene051234 | MS.gene24444 | 0.810583 | 1.07E-50 | -1.69E-46 |
| MS.gene051343 | MS.gene24444 | 0.835374 | 1.74E-56 | -1.69E-46 |
| MS.gene051856 | MS.gene24444 | 0.809835 | 1.55E-50 | -1.69E-46 |
| MS.gene052034 | MS.gene24444 | 0.806955 | 6.40E-50 | -1.69E-46 |
| MS.gene052036 | MS.gene24444 | 0.834814 | 2.41E-56 | -1.69E-46 |
| MS.gene052307 | MS.gene24444 | 0.834439 | 2.99E-56 | -1.69E-46 |
| MS.gene052609 | MS.gene24444 | 0.805914 | 1.06E-49 | -1.69E-46 |
| MS.gene053058 | MS.gene24444 | 0.809165 | 2.17E-50 | -1.69E-46 |
| MS.gene053143 | MS.gene24444 | 0.814413 | 1.56E-51 | -1.69E-46 |
| MS.gene054004 | MS.gene24444 | 0.83333 | 5.67E-56 | -1.69E-46 |
| MS.gene055513 | MS.gene24444 | 0.814677 | 1.36E-51 | -1.69E-46 |
| MS.gene056045 | MS.gene24444 | 0.803069 | 4.16E-49 | -1.69E-46 |
| MS.gene056097 | MS.gene24444 | 0.873765 | 1.14E-67 | -1.69E-46 |
| MS.gene056181 | MS.gene24444 | 0.834617 | 2.70E-56 | -1.69E-46 |
| MS.gene056578 | MS.gene24444 | 0.840005 | 1.13E-57 | -1.69E-46 |
| MS.gene056831 | MS.gene24444 | 0.815767 | 7.81E-52 | -1.69E-46 |
| MS.gene059007 | MS.gene24444 | 0.823283 | 1.51E-53 | -1.69E-46 |
| MS.gene060563 | MS.gene24444 | 0.82539 | 4.81E-54 | -1.69E-46 |
| MS.gene061100 | MS.gene24444 | 0.811607 | 6.43E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24444.t1 | MTR_1g018790 | 98.903 | 547 | 6 | 0 | 1 | 547 | 1 | 547 | 0.0 | 1096 |
| MS.gene24444.t1 | MTR_4g094932 | 54.268 | 492 | 219 | 3 | 52 | 538 | 34 | 524 | 0.0 | 535 |
| MS.gene24444.t1 | MTR_2g021030 | 27.489 | 462 | 261 | 13 | 59 | 449 | 5 | 463 | 8.81e-30 | 124 |
| MS.gene24444.t1 | MTR_2g021030 | 26.171 | 363 | 224 | 12 | 98 | 453 | 245 | 570 | 3.53e-18 | 88.6 |
| MS.gene24444.t1 | MTR_2g021030 | 27.945 | 433 | 239 | 12 | 59 | 421 | 5 | 434 | 1.79e-27 | 115 |
| MS.gene24444.t1 | MTR_4g091290 | 24.375 | 480 | 252 | 18 | 57 | 443 | 19 | 480 | 2.44e-17 | 85.9 |
| MS.gene24444.t1 | MTR_7g083610 | 22.764 | 492 | 261 | 13 | 64 | 446 | 4 | 485 | 3.95e-16 | 82.0 |
| MS.gene24444.t1 | MTR_1g114610 | 24.471 | 425 | 230 | 13 | 66 | 455 | 23 | 391 | 3.88e-15 | 78.2 |
| MS.gene24444.t1 | MTR_3g088895 | 30.806 | 211 | 139 | 5 | 257 | 462 | 77 | 285 | 5.42e-15 | 77.0 |
| MS.gene24444.t1 | MTR_4g013255 | 30.081 | 246 | 164 | 6 | 138 | 381 | 346 | 585 | 1.85e-14 | 76.6 |
| MS.gene24444.t1 | MTR_4g013255 | 26.538 | 260 | 182 | 6 | 187 | 443 | 318 | 571 | 8.02e-14 | 74.7 |
| MS.gene24444.t1 | MTR_4g013255 | 25.879 | 398 | 218 | 11 | 135 | 472 | 138 | 518 | 3.37e-11 | 66.2 |
| MS.gene24444.t1 | MTR_3g107280 | 25.620 | 363 | 198 | 13 | 137 | 434 | 225 | 580 | 2.34e-14 | 76.3 |
| MS.gene24444.t1 | MTR_3g107280 | 37.143 | 140 | 82 | 4 | 320 | 453 | 143 | 282 | 8.40e-13 | 71.6 |
| MS.gene24444.t1 | MTR_3g107280 | 30.052 | 193 | 98 | 7 | 294 | 453 | 200 | 388 | 4.00e-11 | 66.2 |
| MS.gene24444.t1 | MTR_8g028140 | 24.033 | 362 | 204 | 14 | 45 | 341 | 4 | 359 | 7.04e-14 | 73.9 |
| MS.gene24444.t1 | MTR_4g080020 | 24.520 | 469 | 247 | 16 | 54 | 470 | 3 | 416 | 9.39e-14 | 74.7 |
| MS.gene24444.t1 | MTR_1g054625 | 27.668 | 253 | 159 | 9 | 120 | 361 | 77 | 316 | 8.29e-13 | 70.5 |
| MS.gene24444.t1 | MTR_1g012520 | 24.545 | 330 | 202 | 11 | 137 | 453 | 201 | 496 | 9.59e-13 | 71.2 |
| MS.gene24444.t1 | MTR_1g012520 | 30.370 | 135 | 66 | 3 | 320 | 453 | 177 | 284 | 1.19e-11 | 67.8 |
| MS.gene24444.t1 | MTR_7g112570 | 25.852 | 352 | 219 | 13 | 134 | 453 | 193 | 534 | 1.79e-12 | 70.5 |
| MS.gene24444.t1 | MTR_7g112570 | 23.148 | 432 | 241 | 15 | 64 | 453 | 49 | 431 | 6.68e-11 | 65.5 |
| MS.gene24444.t1 | MTR_7g112570 | 25.852 | 352 | 219 | 13 | 134 | 453 | 193 | 534 | 2.27e-12 | 70.1 |
| MS.gene24444.t1 | MTR_7g112570 | 23.148 | 432 | 241 | 15 | 64 | 453 | 49 | 431 | 8.13e-11 | 65.1 |
| MS.gene24444.t1 | MTR_7g112570 | 25.852 | 352 | 219 | 13 | 134 | 453 | 193 | 534 | 2.64e-12 | 70.1 |
| MS.gene24444.t1 | MTR_1g054625 | 27.511 | 229 | 127 | 6 | 138 | 361 | 25 | 219 | 1.57e-11 | 65.1 |
| MS.gene24444.t1 | MTR_4g130630 | 32.653 | 147 | 92 | 4 | 296 | 438 | 73 | 216 | 6.87e-11 | 62.8 |
| MS.gene24444.t1 | MTR_2g104760 | 24.163 | 418 | 256 | 13 | 71 | 453 | 9 | 400 | 9.01e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24444.t1 | AT1G47056 | 66.529 | 484 | 156 | 4 | 55 | 536 | 34 | 513 | 0.0 | 628 |
| MS.gene24444.t1 | AT4G07400 | 61.228 | 521 | 185 | 6 | 13 | 531 | 34 | 539 | 0.0 | 607 |
| MS.gene24444.t1 | AT5G67250 | 56.354 | 543 | 207 | 6 | 1 | 538 | 1 | 518 | 0.0 | 555 |
| MS.gene24444.t1 | AT3G50080 | 56.790 | 486 | 200 | 6 | 56 | 538 | 36 | 514 | 0.0 | 530 |
| MS.gene24444.t1 | AT4G15475 | 29.697 | 330 | 210 | 13 | 127 | 447 | 274 | 590 | 1.15e-23 | 105 |
| MS.gene24444.t1 | AT4G15475 | 27.696 | 408 | 243 | 12 | 51 | 453 | 3 | 363 | 2.94e-21 | 98.2 |
| MS.gene24444.t1 | AT2G25490 | 25.874 | 429 | 274 | 16 | 61 | 453 | 64 | 484 | 1.43e-16 | 83.6 |
| MS.gene24444.t1 | AT2G25490 | 24.931 | 361 | 204 | 9 | 134 | 433 | 212 | 566 | 5.99e-14 | 75.1 |
| MS.gene24444.t1 | AT5G27920 | 26.796 | 362 | 216 | 13 | 134 | 459 | 155 | 503 | 3.87e-16 | 82.0 |
| MS.gene24444.t1 | AT5G27920 | 26.087 | 299 | 148 | 9 | 158 | 446 | 332 | 567 | 5.26e-11 | 65.9 |
| MS.gene24444.t1 | AT1G12820 | 24.356 | 427 | 253 | 13 | 61 | 443 | 1 | 401 | 1.61e-14 | 77.0 |
| MS.gene24444.t1 | AT5G01720 | 28.906 | 256 | 164 | 6 | 134 | 382 | 338 | 582 | 1.77e-14 | 77.0 |
| MS.gene24444.t1 | AT5G01720 | 23.684 | 494 | 265 | 17 | 63 | 452 | 14 | 499 | 2.20e-11 | 67.0 |
| MS.gene24444.t1 | AT5G23340 | 25.806 | 341 | 177 | 13 | 64 | 365 | 10 | 313 | 2.36e-14 | 75.5 |
| MS.gene24444.t1 | AT3G26810 | 25.180 | 417 | 260 | 16 | 61 | 443 | 1 | 399 | 4.09e-14 | 75.5 |
| MS.gene24444.t1 | AT3G07550 | 25.294 | 340 | 217 | 14 | 61 | 377 | 15 | 340 | 5.62e-14 | 73.9 |
| MS.gene24444.t1 | AT1G80570 | 24.138 | 435 | 264 | 17 | 55 | 453 | 8 | 412 | 3.05e-13 | 72.4 |
| MS.gene24444.t1 | AT1G80570 | 24.242 | 429 | 259 | 17 | 61 | 453 | 1 | 399 | 1.14e-12 | 70.9 |
| MS.gene24444.t1 | AT1G80570 | 24.242 | 429 | 259 | 17 | 61 | 453 | 1 | 399 | 1.14e-12 | 70.9 |
| MS.gene24444.t1 | AT5G25350 | 33.163 | 196 | 88 | 7 | 294 | 453 | 180 | 368 | 1.32e-12 | 70.9 |
| MS.gene24444.t1 | AT3G07550 | 24.176 | 364 | 218 | 14 | 61 | 377 | 15 | 367 | 2.77e-12 | 68.9 |
| MS.gene24444.t1 | AT3G07550 | 24.176 | 364 | 218 | 14 | 61 | 377 | 15 | 367 | 2.77e-12 | 68.9 |
| MS.gene24444.t1 | AT1G21410 | 27.638 | 199 | 137 | 5 | 257 | 450 | 66 | 262 | 2.30e-11 | 65.9 |
| MS.gene24444.t1 | AT1G21410 | 27.638 | 199 | 137 | 5 | 257 | 450 | 66 | 262 | 2.30e-11 | 65.9 |
| MS.gene24444.t1 | AT4G03190 | 21.384 | 477 | 254 | 14 | 80 | 446 | 22 | 487 | 7.62e-11 | 65.1 |
Find 153 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCACCAATTCTTGCAAATT+AGG | 0.147721 | 1.1:+4156473 | None:intergenic |
| GACCTTCACTTTCACCAAAT+TGG | 0.167556 | 1.1:+4156244 | None:intergenic |
| TATTTCGAATTGTTCGAATT+TGG | 0.247249 | 1.1:-4156648 | MS.gene24444:CDS |
| AGTTGTCCTGTTTCTGATCT+TGG | 0.260446 | 1.1:-4156293 | MS.gene24444:CDS |
| GCCGCGGAGCCGGGCATTGC+AGG | 0.275184 | 1.1:+4156074 | None:intergenic |
| AGGCTTCAGATTAGTGATAT+TGG | 0.286479 | 1.1:-4156680 | MS.gene24444:CDS |
| TTGCAAGAATTGGTGCTTAT+TGG | 0.291569 | 1.1:-4156467 | MS.gene24444:CDS |
| TCGTGTGGATCTTGTACTTT+TGG | 0.297932 | 1.1:-4157004 | MS.gene24444:CDS |
| CTTTATAATGGACAGTGTTT+TGG | 0.307331 | 1.1:-4156830 | MS.gene24444:CDS |
| ATCGGTTGCCTGCACTTTCC+CGG | 0.307896 | 1.1:+4157512 | None:intergenic |
| GACACCTGAGTGTACTGATA+TGG | 0.308361 | 1.1:-4156606 | MS.gene24444:CDS |
| GCACCAATTCTTGCAAATTA+GGG | 0.310819 | 1.1:+4156474 | None:intergenic |
| GGCGGTGGATCTGTTGGTTT+TGG | 0.323583 | 1.1:+4157486 | None:intergenic |
| TTGCCCTAATTTGCAAGAAT+TGG | 0.326430 | 1.1:-4156477 | MS.gene24444:CDS |
| GGCAAATGGGTGTCCCAATT+TGG | 0.327661 | 1.1:-4156258 | MS.gene24444:CDS |
| CTGAAAGATGTAAGTTGTTA+AGG | 0.328374 | 1.1:-4156568 | MS.gene24444:CDS |
| ACCTTCACTTTCACCAAATT+GGG | 0.329278 | 1.1:+4156245 | None:intergenic |
| ATCAGTGTTCACTCGTTTGC+CGG | 0.338793 | 1.1:-4157306 | MS.gene24444:CDS |
| TGTTTGAAGGAACTTTATAA+TGG | 0.338946 | 1.1:-4156842 | MS.gene24444:CDS |
| TATTTCGATGTTCCGGTGAT+TGG | 0.339573 | 1.1:-4156766 | MS.gene24444:CDS |
| TGATCTTGGGATGGAAGCTT+TGG | 0.344571 | 1.1:-4156279 | MS.gene24444:CDS |
| AATTGTCGGTGAAGCGGCTT+AGG | 0.348422 | 1.1:-4156934 | MS.gene24444:CDS |
| GTTGTCCTGTTTCTGATCTT+GGG | 0.350129 | 1.1:-4156292 | MS.gene24444:CDS |
| CGCGACACGCGCGGAGCTTA+AGG | 0.354968 | 1.1:+4157086 | None:intergenic |
| TTGCATTGCTGCAAAGTGTT+TGG | 0.356470 | 1.1:-4156339 | MS.gene24444:CDS |
| CGCGAAGTTTGATCTTCTTC+CGG | 0.356911 | 1.1:-4157236 | MS.gene24444:CDS |
| CTCAACCAATCCCCACCTTC+AGG | 0.369729 | 1.1:+4156200 | None:intergenic |
| TTGAAGCTATTTCGATGTTC+CGG | 0.378035 | 1.1:-4156773 | MS.gene24444:CDS |
| TAACCCTACGAGAGTGAGTT+TGG | 0.378471 | 1.1:-4156441 | MS.gene24444:CDS |
| AGTTCATTCAAGCAAAGGTT+AGG | 0.388373 | 1.1:-4156008 | MS.gene24444:CDS |
| GGGATTGGTTGAGGCACACT+AGG | 0.389313 | 1.1:-4156190 | MS.gene24444:CDS |
| CTAAGAATTGCAAGGGTTTG+AGG | 0.389340 | 1.1:-4157033 | MS.gene24444:CDS |
| AAAGCCAATCTCTCTAGATT+CGG | 0.392075 | 1.1:+4156398 | None:intergenic |
| GTTGAAGACGATTTGTTTGA+AGG | 0.397116 | 1.1:-4156855 | MS.gene24444:CDS |
| GGGATGGAAGCTTTGGCAAA+TGG | 0.408413 | 1.1:-4156272 | MS.gene24444:CDS |
| TTAAGGAAGCTACATATTGA+TGG | 0.408793 | 1.1:-4156551 | MS.gene24444:CDS |
| CGATGTAGATGCCGCGGAGC+CGG | 0.410875 | 1.1:+4156064 | None:intergenic |
| ATTTCGATGTTCCGGTGATT+GGG | 0.419025 | 1.1:-4156765 | MS.gene24444:CDS |
| GGTTTCTGTAGCTGTGAATC+TGG | 0.425023 | 1.1:-4156168 | MS.gene24444:CDS |
| ACTTTCCCGGCGGTTGGTTC+CGG | 0.430973 | 1.1:+4157525 | None:intergenic |
| CCGCGCGTGTCGCGAACTTA+CGG | 0.432226 | 1.1:-4157077 | MS.gene24444:CDS |
| GATGTAGATGCCGCGGAGCC+GGG | 0.436914 | 1.1:+4156065 | None:intergenic |
| TTACACCTGAAGGTGGGGAT+TGG | 0.440333 | 1.1:-4156205 | MS.gene24444:CDS |
| GCCTGCACTTTCCCGGCGGT+TGG | 0.443897 | 1.1:+4157519 | None:intergenic |
| GTTCACTCGTTTGCCGGCGG+TGG | 0.448947 | 1.1:-4157300 | MS.gene24444:CDS |
| GCAAATCGGATTGGCGATGA+AGG | 0.452211 | 1.1:-4156521 | MS.gene24444:CDS |
| TTGCCCGAATCTAGAGAGAT+TGG | 0.454730 | 1.1:-4156402 | MS.gene24444:CDS |
| TTAAACAGAGAAGGAATTAC+CGG | 0.456733 | 1.1:+4157217 | None:intergenic |
| CGGTGACGATGTTGCAGATC+CGG | 0.458209 | 1.1:-4157434 | MS.gene24444:CDS |
| TCGTTACCGTCACCGTCAAC+CGG | 0.458796 | 1.1:+4157415 | None:intergenic |
| CGGCGGTGGCTTCACGTTGA+AGG | 0.459312 | 1.1:-4157286 | MS.gene24444:CDS |
| TGTCGCGAACTTACGGATGC+TGG | 0.459477 | 1.1:-4157070 | MS.gene24444:CDS |
| AGGTAGATCTGATATATAAT+CGG | 0.459744 | 1.1:+4157378 | None:intergenic |
| CGAACTTACGGATGCTGGAA+TGG | 0.461081 | 1.1:-4157065 | MS.gene24444:CDS |
| TGGCTAACACTTTGAGAAGA+TGG | 0.461170 | 1.1:-4155962 | MS.gene24444:CDS |
| CAAAGGTTAGGGCTACTGTC+CGG | 0.463095 | 1.1:-4155996 | MS.gene24444:CDS |
| AGCTTAAGGCGCGTGAGATT+AGG | 0.464192 | 1.1:+4157100 | None:intergenic |
| TCCTGTTTCTGATCTTGGGA+TGG | 0.465939 | 1.1:-4156288 | MS.gene24444:CDS |
| GGATGGAAGCTTTGGCAAAT+GGG | 0.471037 | 1.1:-4156271 | MS.gene24444:CDS |
| TCCATCCCAAGATCAGAAAC+AGG | 0.475671 | 1.1:+4156287 | None:intergenic |
| AGTGAAGGTCAAGAAGTGTA+AGG | 0.477496 | 1.1:-4156231 | MS.gene24444:CDS |
| CGCCGCGCTCGAGGAATTGT+CGG | 0.479472 | 1.1:-4156948 | MS.gene24444:CDS |
| ATTGAATTTCCTGCAATGCC+CGG | 0.481428 | 1.1:-4156083 | MS.gene24444:CDS |
| AAGCCAATCTCTCTAGATTC+GGG | 0.481744 | 1.1:+4156399 | None:intergenic |
| TTGATGGATGGAAGGCAAAT+CGG | 0.482279 | 1.1:-4156535 | MS.gene24444:CDS |
| GATGGTGGAGCACAAGAGAA+TGG | 0.489500 | 1.1:-4156107 | MS.gene24444:CDS |
| CGGTGACCGTGGAAGCTGCT+TGG | 0.490935 | 1.1:+4157545 | None:intergenic |
| GCGGCCACACCCGGTCCAAT+CGG | 0.492352 | 1.1:+4156884 | None:intergenic |
| GGTGGCTGAGCCGATTGGAC+CGG | 0.494009 | 1.1:-4156894 | MS.gene24444:CDS |
| AAAGGTTAGGGCTACTGTCC+GGG | 0.502510 | 1.1:-4155995 | MS.gene24444:CDS |
| CAAGCAGCTTCCACGGTCAC+CGG | 0.502543 | 1.1:-4157544 | MS.gene24444:CDS |
| ACACCTGAGTGTACTGATAT+GGG | 0.505583 | 1.1:-4156605 | MS.gene24444:CDS |
| AACACTTTGAGAAGATGGTC+AGG | 0.506891 | 1.1:-4155957 | MS.gene24444:CDS |
| ACCAACCGCCGGGAAAGTGC+AGG | 0.508208 | 1.1:-4157520 | MS.gene24444:CDS |
| GATCGAGTTCATTCAAGCAA+AGG | 0.510836 | 1.1:-4156013 | MS.gene24444:CDS |
| GCAGCAATGCAAGATATCTC+AGG | 0.514016 | 1.1:+4156350 | None:intergenic |
| ATTGTCGGTGAAGCGGCTTA+GGG | 0.516744 | 1.1:-4156933 | MS.gene24444:CDS |
| CGGCTCCGCGGCATCTACAT+CGG | 0.517144 | 1.1:-4156063 | MS.gene24444:CDS |
| GAGAGTGAGTTTGGAAATGT+TGG | 0.521536 | 1.1:-4156432 | MS.gene24444:CDS |
| CGGTCACCGGAACCAACCGC+CGG | 0.521564 | 1.1:-4157531 | MS.gene24444:CDS |
| AACCAACAGATCCACCGCCT+TGG | 0.526292 | 1.1:-4157482 | MS.gene24444:CDS |
| ATGGTGGAGCACAAGAGAAT+GGG | 0.527565 | 1.1:-4156106 | MS.gene24444:CDS |
| CTGAAGGTGGGGATTGGTTG+AGG | 0.528050 | 1.1:-4156199 | MS.gene24444:CDS |
| ACAATCGCTAAACATTCATC+AGG | 0.529545 | 1.1:+4157358 | None:intergenic |
| ACTGCGGTGGCTGAGCCGAT+TGG | 0.531430 | 1.1:-4156899 | MS.gene24444:CDS |
| CTCTTGTCTCTAACCATGGC+GGG | 0.531541 | 1.1:+4155920 | None:intergenic |
| AACCAAGGCGGTGGATCTGT+TGG | 0.533705 | 1.1:+4157480 | None:intergenic |
| TCCTGCAATGCCCGGCTCCG+CGG | 0.534211 | 1.1:-4156075 | MS.gene24444:CDS |
| GGTGACGGTAACGACGGAAT+CGG | 0.538000 | 1.1:-4157406 | MS.gene24444:CDS |
| GATGGGCCAAGCAGCTTCCA+CGG | 0.538513 | 1.1:-4157551 | MS.gene24444:CDS |
| TATGCTCTTGTCTCTAACCA+TGG | 0.541827 | 1.1:+4155916 | None:intergenic |
| GGATGGAAGGCAAATCGGAT+TGG | 0.542728 | 1.1:-4156530 | MS.gene24444:CDS |
| GGATTGGTTGAGGCACACTA+GGG | 0.546523 | 1.1:-4156189 | MS.gene24444:CDS |
| TGAAAATTGCGCCGCGCTCG+AGG | 0.548189 | 1.1:-4156957 | MS.gene24444:CDS |
| TACGCTTATGGCTGAAAGAG+TGG | 0.548501 | 1.1:-4156732 | MS.gene24444:CDS |
| GTTCATTCAAGCAAAGGTTA+GGG | 0.551510 | 1.1:-4156007 | MS.gene24444:CDS |
| GTGGCTGAGCCGATTGGACC+GGG | 0.559010 | 1.1:-4156893 | MS.gene24444:CDS |
| CATCGGAGAAACCAAGGCGG+TGG | 0.561191 | 1.1:+4157471 | None:intergenic |
| AACGACGCAGCGGCCACACC+CGG | 0.561295 | 1.1:+4156875 | None:intergenic |
| TCAAATCGATTAAACAGAGA+AGG | 0.563215 | 1.1:+4157208 | None:intergenic |
| TTTCCAAACTCACTCTCGTA+GGG | 0.564500 | 1.1:+4156438 | None:intergenic |
| GGTCACCGGAACCAACCGCC+GGG | 0.573207 | 1.1:-4157530 | MS.gene24444:CDS |
| CTTCAACGTGAAGCCACCGC+CGG | 0.574094 | 1.1:+4157287 | None:intergenic |
| CCGTCGTCGGTGGAGATCAT+CGG | 0.576061 | 1.1:+4157454 | None:intergenic |
| ATTTCCAAACTCACTCTCGT+AGG | 0.578841 | 1.1:+4156437 | None:intergenic |
| CCGTAAGTTCGCGACACGCG+CGG | 0.579903 | 1.1:+4157077 | None:intergenic |
| TGAGCCGATTGGACCGGGTG+TGG | 0.583172 | 1.1:-4156888 | MS.gene24444:CDS |
| AGGGTGTTACACCTGAAGGT+GGG | 0.590987 | 1.1:-4156211 | MS.gene24444:CDS |
| TGCAACATCGTCACCGTCGT+CGG | 0.591831 | 1.1:+4157441 | None:intergenic |
| GCAGATCCGGTTGACGGTGA+CGG | 0.594512 | 1.1:-4157421 | MS.gene24444:CDS |
| TCGAGGAATTGTCGGTGAAG+CGG | 0.594693 | 1.1:-4156940 | MS.gene24444:CDS |
| AGTCGTTGAATCCCTCTGAT+CGG | 0.596436 | 1.1:-4157330 | MS.gene24444:CDS |
| CACCGACAATTCCTCGAGCG+CGG | 0.597818 | 1.1:+4156946 | None:intergenic |
| GGAAGCTACATATTGATGGA+TGG | 0.598307 | 1.1:-4156547 | MS.gene24444:CDS |
| TTGAGAAGATGGTCAGGTGG+TGG | 0.599941 | 1.1:-4155951 | MS.gene24444:CDS |
| GCTACATATTGATGGATGGA+AGG | 0.601245 | 1.1:-4156543 | MS.gene24444:CDS |
| GCGGTTGGTTCCGGTGACCG+TGG | 0.602758 | 1.1:+4157534 | None:intergenic |
| TGAACACTGATTCCGATCAG+AGG | 0.604053 | 1.1:+4157318 | None:intergenic |
| TAGGGGAATTGCTGAGACTG+CGG | 0.604704 | 1.1:-4156915 | MS.gene24444:CDS |
| GTGAAGGTCAAGAAGTGTAA+GGG | 0.606922 | 1.1:-4156230 | MS.gene24444:CDS |
| GGTGGCACTAGTGCCCGCCA+TGG | 0.608146 | 1.1:-4155933 | MS.gene24444:CDS |
| GAACACTGATTCCGATCAGA+GGG | 0.612028 | 1.1:+4157319 | None:intergenic |
| TGTAAGGGTGTTACACCTGA+AGG | 0.612165 | 1.1:-4156215 | MS.gene24444:CDS |
| GATGCTAGTGCTAGTGATGG+TGG | 0.613432 | 1.1:-4156122 | MS.gene24444:CDS |
| TGTAGCTGTGAATCTGGACG+CGG | 0.617383 | 1.1:-4156162 | MS.gene24444:CDS |
| GGGTGTTACACCTGAAGGTG+GGG | 0.621074 | 1.1:-4156210 | MS.gene24444:CDS |
| TTGAAGGACAGAGTCGTCAA+CGG | 0.623455 | 1.1:-4157270 | MS.gene24444:CDS |
| TTGTCGGTGAAGCGGCTTAG+GGG | 0.627341 | 1.1:-4156932 | MS.gene24444:CDS |
| CAAATCGGATTGGCGATGAA+GGG | 0.628264 | 1.1:-4156520 | MS.gene24444:CDS |
| TGGCGATGAAGGGTTAATTG+CGG | 0.631783 | 1.1:-4156510 | MS.gene24444:CDS |
| TCCCAATTTGGTGAAAGTGA+AGG | 0.632374 | 1.1:-4156246 | MS.gene24444:CDS |
| TTGTGTGCAAGTGATACTGT+TGG | 0.633448 | 1.1:-4156377 | MS.gene24444:CDS |
| AGTGTTCACTCGTTTGCCGG+CGG | 0.634069 | 1.1:-4157303 | MS.gene24444:CDS |
| AAGGGTGTTACACCTGAAGG+TGG | 0.641667 | 1.1:-4156212 | MS.gene24444:CDS |
| GGAGATCATCGGAGAAACCA+AGG | 0.642236 | 1.1:+4157465 | None:intergenic |
| AGTGGCGAGTATGATTGTTG+AGG | 0.646663 | 1.1:-4156714 | MS.gene24444:CDS |
| GATGTTGCAGATCCGGTTGA+CGG | 0.647651 | 1.1:-4157427 | MS.gene24444:CDS |
| AACATCGTCACCGTCGTCGG+TGG | 0.649647 | 1.1:+4157444 | None:intergenic |
| GCTCTTGTCTCTAACCATGG+CGG | 0.650458 | 1.1:+4155919 | None:intergenic |
| GGGAATTGCTGAGACTGCGG+TGG | 0.651918 | 1.1:-4156912 | MS.gene24444:CDS |
| ATTTGCCGATGTAGATGCCG+CGG | 0.660814 | 1.1:+4156058 | None:intergenic |
| CCGATGATCTCCACCGACGA+CGG | 0.668098 | 1.1:-4157454 | MS.gene24444:CDS |
| CAAGATGCTAGTGCTAGTGA+TGG | 0.682263 | 1.1:-4156125 | MS.gene24444:CDS |
| GGTTTGAGGAAATTATCGTG+TGG | 0.686243 | 1.1:-4157019 | MS.gene24444:CDS |
| ACTGTCCGGGAGGAAAATTG+TGG | 0.692257 | 1.1:-4155982 | MS.gene24444:CDS |
| GTTGACGGTGACGGTAACGA+CGG | 0.702577 | 1.1:-4157412 | MS.gene24444:CDS |
| AATCGTCTTCAACGACGCAG+CGG | 0.706961 | 1.1:+4156865 | None:intergenic |
| GGTTGCCTGCACTTTCCCGG+CGG | 0.709663 | 1.1:+4157515 | None:intergenic |
| ACTTTGAGAAGATGGTCAGG+TGG | 0.710543 | 1.1:-4155954 | MS.gene24444:CDS |
| GGTTAGGGCTACTGTCCGGG+AGG | 0.714520 | 1.1:-4155992 | MS.gene24444:CDS |
| AGTCCCATATCAGTACACTC+AGG | 0.721622 | 1.1:+4156602 | None:intergenic |
| TGGATCTAAAGGTATGAACG+CGG | 0.726086 | 1.1:-4156984 | MS.gene24444:CDS |
| GATCATCGGAGAAACCAAGG+CGG | 0.832722 | 1.1:+4157468 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AGGTAGATCTGATATATAAT+CGG | + | chr1.1:4156104-4156123 | None:intergenic | 25.0% |
| ! | TATTTCGAATTGTTCGAATT+TGG | - | chr1.1:4156831-4156850 | MS.gene24444:CDS | 25.0% |
| ! | TGTTTGAAGGAACTTTATAA+TGG | - | chr1.1:4156637-4156656 | MS.gene24444:CDS | 25.0% |
| CTGAAAGATGTAAGTTGTTA+AGG | - | chr1.1:4156911-4156930 | MS.gene24444:CDS | 30.0% | |
| TCAAATCGATTAAACAGAGA+AGG | + | chr1.1:4156274-4156293 | None:intergenic | 30.0% | |
| TTAAACAGAGAAGGAATTAC+CGG | + | chr1.1:4156265-4156284 | None:intergenic | 30.0% | |
| TTAAGGAAGCTACATATTGA+TGG | - | chr1.1:4156928-4156947 | MS.gene24444:CDS | 30.0% | |
| ! | TCTTGTACTTTTGGATCTAA+AGG | - | chr1.1:4156484-4156503 | MS.gene24444:CDS | 30.0% |
| !!! | CTTTATAATGGACAGTGTTT+TGG | - | chr1.1:4156649-4156668 | MS.gene24444:CDS | 30.0% |
| !!! | TGTTTTGGTTCGTTGATTTT+AGG | - | chr1.1:4156664-4156683 | MS.gene24444:CDS | 30.0% |
| AAAGCCAATCTCTCTAGATT+CGG | + | chr1.1:4157084-4157103 | None:intergenic | 35.0% | |
| ACAATCGCTAAACATTCATC+AGG | + | chr1.1:4156124-4156143 | None:intergenic | 35.0% | |
| ACCTTCACTTTCACCAAATT+GGG | + | chr1.1:4157237-4157256 | None:intergenic | 35.0% | |
| AGCACCAATTCTTGCAAATT+AGG | + | chr1.1:4157009-4157028 | None:intergenic | 35.0% | |
| AGGCTTCAGATTAGTGATAT+TGG | - | chr1.1:4156799-4156818 | MS.gene24444:CDS | 35.0% | |
| AGTTCATTCAAGCAAAGGTT+AGG | - | chr1.1:4157471-4157490 | MS.gene24444:CDS | 35.0% | |
| GCACCAATTCTTGCAAATTA+GGG | + | chr1.1:4157008-4157027 | None:intergenic | 35.0% | |
| GTTCATTCAAGCAAAGGTTA+GGG | - | chr1.1:4157472-4157491 | MS.gene24444:CDS | 35.0% | |
| ! | AGCTTTTGCTAAGAATTGCA+AGG | - | chr1.1:4156438-4156457 | MS.gene24444:CDS | 35.0% |
| ! | GCTTTTGCTAAGAATTGCAA+GGG | - | chr1.1:4156439-4156458 | MS.gene24444:CDS | 35.0% |
| ! | GTTGAAGACGATTTGTTTGA+AGG | - | chr1.1:4156624-4156643 | MS.gene24444:CDS | 35.0% |
| ! | TTGAAGCTATTTCGATGTTC+CGG | - | chr1.1:4156706-4156725 | MS.gene24444:CDS | 35.0% |
| ! | TTGCAAGAATTGGTGCTTAT+TGG | - | chr1.1:4157012-4157031 | MS.gene24444:CDS | 35.0% |
| ! | TTGCCCTAATTTGCAAGAAT+TGG | - | chr1.1:4157002-4157021 | MS.gene24444:CDS | 35.0% |
| ! | TTGTTGAGGTTCATTTTGAG+AGG | - | chr1.1:4156779-4156798 | MS.gene24444:CDS | 35.0% |
| !!! | ATCTGTTGGTTTTGGTAGAT+CGG | + | chr1.1:4155988-4156007 | None:intergenic | 35.0% |
| AAGCCAATCTCTCTAGATTC+GGG | + | chr1.1:4157083-4157102 | None:intergenic | 40.0% | |
| ATTGAATTTCCTGCAATGCC+CGG | - | chr1.1:4157396-4157415 | MS.gene24444:CDS | 40.0% | |
| ATTTCCAAACTCACTCTCGT+AGG | + | chr1.1:4157045-4157064 | None:intergenic | 40.0% | |
| ATTTCGATGTTCCGGTGATT+GGG | - | chr1.1:4156714-4156733 | MS.gene24444:CDS | 40.0% | |
| CTAAGAATTGCAAGGGTTTG+AGG | - | chr1.1:4156446-4156465 | MS.gene24444:CDS | 40.0% | |
| GACCTTCACTTTCACCAAAT+TGG | + | chr1.1:4157238-4157257 | None:intergenic | 40.0% | |
| GAGAGTGAGTTTGGAAATGT+TGG | - | chr1.1:4157047-4157066 | MS.gene24444:CDS | 40.0% | |
| GATCGAGTTCATTCAAGCAA+AGG | - | chr1.1:4157466-4157485 | MS.gene24444:CDS | 40.0% | |
| GGAAGCTACATATTGATGGA+TGG | - | chr1.1:4156932-4156951 | MS.gene24444:CDS | 40.0% | |
| GGTTTGAGGAAATTATCGTG+TGG | - | chr1.1:4156460-4156479 | MS.gene24444:CDS | 40.0% | |
| TATTTCGATGTTCCGGTGAT+TGG | - | chr1.1:4156713-4156732 | MS.gene24444:CDS | 40.0% | |
| TTGTGTGCAAGTGATACTGT+TGG | - | chr1.1:4157102-4157121 | MS.gene24444:CDS | 40.0% | |
| TTTCCAAACTCACTCTCGTA+GGG | + | chr1.1:4157044-4157063 | None:intergenic | 40.0% | |
| ! | AAAAAGCGTATCCCAATCAC+CGG | + | chr1.1:4156728-4156747 | None:intergenic | 40.0% |
| ! | AACACTTTGAGAAGATGGTC+AGG | - | chr1.1:4157522-4157541 | MS.gene24444:CDS | 40.0% |
| ! | ACACCTGAGTGTACTGATAT+GGG | - | chr1.1:4156874-4156893 | MS.gene24444:CDS | 40.0% |
| ! | AGTGAAGGTCAAGAAGTGTA+AGG | - | chr1.1:4157248-4157267 | MS.gene24444:CDS | 40.0% |
| ! | GCTACATATTGATGGATGGA+AGG | - | chr1.1:4156936-4156955 | MS.gene24444:CDS | 40.0% |
| ! | GTGAAGGTCAAGAAGTGTAA+GGG | - | chr1.1:4157249-4157268 | MS.gene24444:CDS | 40.0% |
| ! | TCCCAATTTGGTGAAAGTGA+AGG | - | chr1.1:4157233-4157252 | MS.gene24444:CDS | 40.0% |
| ! | TCGTGTGGATCTTGTACTTT+TGG | - | chr1.1:4156475-4156494 | MS.gene24444:CDS | 40.0% |
| ! | TGGATCTAAAGGTATGAACG+CGG | - | chr1.1:4156495-4156514 | MS.gene24444:CDS | 40.0% |
| ! | TGGCTAACACTTTGAGAAGA+TGG | - | chr1.1:4157517-4157536 | MS.gene24444:CDS | 40.0% |
| ! | TTGATGGATGGAAGGCAAAT+CGG | - | chr1.1:4156944-4156963 | MS.gene24444:CDS | 40.0% |
| ! | TTGCATTGCTGCAAAGTGTT+TGG | - | chr1.1:4157140-4157159 | MS.gene24444:CDS | 40.0% |
| !! | AGTTGTCCTGTTTCTGATCT+TGG | - | chr1.1:4157186-4157205 | MS.gene24444:CDS | 40.0% |
| !! | GGATACGCTTTTTACGCTTA+TGG | - | chr1.1:4156735-4156754 | MS.gene24444:CDS | 40.0% |
| !! | GTTGTCCTGTTTCTGATCTT+GGG | - | chr1.1:4157187-4157206 | MS.gene24444:CDS | 40.0% |
| AGTCCCATATCAGTACACTC+AGG | + | chr1.1:4156880-4156899 | None:intergenic | 45.0% | |
| AGTCGTTGAATCCCTCTGAT+CGG | - | chr1.1:4156149-4156168 | MS.gene24444:CDS | 45.0% | |
| AGTGGCGAGTATGATTGTTG+AGG | - | chr1.1:4156765-4156784 | MS.gene24444:CDS | 45.0% | |
| ATCAGTGTTCACTCGTTTGC+CGG | - | chr1.1:4156173-4156192 | MS.gene24444:CDS | 45.0% | |
| CAAGATGCTAGTGCTAGTGA+TGG | - | chr1.1:4157354-4157373 | MS.gene24444:CDS | 45.0% | |
| CGCGAAGTTTGATCTTCTTC+CGG | - | chr1.1:4156243-4156262 | MS.gene24444:CDS | 45.0% | |
| GCAGCAATGCAAGATATCTC+AGG | + | chr1.1:4157132-4157151 | None:intergenic | 45.0% | |
| GGTTTCTGTAGCTGTGAATC+TGG | - | chr1.1:4157311-4157330 | MS.gene24444:CDS | 45.0% | |
| TAACCCTACGAGAGTGAGTT+TGG | - | chr1.1:4157038-4157057 | MS.gene24444:CDS | 45.0% | |
| TACGCTTATGGCTGAAAGAG+TGG | - | chr1.1:4156747-4156766 | MS.gene24444:CDS | 45.0% | |
| TCCATCCCAAGATCAGAAAC+AGG | + | chr1.1:4157195-4157214 | None:intergenic | 45.0% | |
| TGATCTTGGGATGGAAGCTT+TGG | - | chr1.1:4157200-4157219 | MS.gene24444:CDS | 45.0% | |
| TGGCGATGAAGGGTTAATTG+CGG | - | chr1.1:4156969-4156988 | MS.gene24444:CDS | 45.0% | |
| TTGAAGGACAGAGTCGTCAA+CGG | - | chr1.1:4156209-4156228 | MS.gene24444:CDS | 45.0% | |
| TTGCCCGAATCTAGAGAGAT+TGG | - | chr1.1:4157077-4157096 | MS.gene24444:CDS | 45.0% | |
| ! | ACTTTGAGAAGATGGTCAGG+TGG | - | chr1.1:4157525-4157544 | MS.gene24444:CDS | 45.0% |
| ! | ATGGTGGAGCACAAGAGAAT+GGG | - | chr1.1:4157373-4157392 | MS.gene24444:CDS | 45.0% |
| ! | GACACCTGAGTGTACTGATA+TGG | - | chr1.1:4156873-4156892 | MS.gene24444:CDS | 45.0% |
| ! | GGATGGAAGCTTTGGCAAAT+GGG | - | chr1.1:4157208-4157227 | MS.gene24444:CDS | 45.0% |
| ! | GTTAGCCACAATTTTCCTCC+CGG | + | chr1.1:4157505-4157524 | None:intergenic | 45.0% |
| !! | CAAATCGGATTGGCGATGAA+GGG | - | chr1.1:4156959-4156978 | MS.gene24444:CDS | 45.0% |
| !! | GAACACTGATTCCGATCAGA+GGG | + | chr1.1:4156163-4156182 | None:intergenic | 45.0% |
| !! | TCCTGTTTCTGATCTTGGGA+TGG | - | chr1.1:4157191-4157210 | MS.gene24444:CDS | 45.0% |
| !! | TGAACACTGATTCCGATCAG+AGG | + | chr1.1:4156164-4156183 | None:intergenic | 45.0% |
| !! | TGTAAGGGTGTTACACCTGA+AGG | - | chr1.1:4157264-4157283 | MS.gene24444:CDS | 45.0% |
| AAAGGTTAGGGCTACTGTCC+GGG | - | chr1.1:4157484-4157503 | MS.gene24444:CDS | 50.0% | |
| AATCGTCTTCAACGACGCAG+CGG | + | chr1.1:4156617-4156636 | None:intergenic | 50.0% | |
| AATTGTCGGTGAAGCGGCTT+AGG | - | chr1.1:4156545-4156564 | MS.gene24444:CDS | 50.0% | |
| ACTGTCCGGGAGGAAAATTG+TGG | - | chr1.1:4157497-4157516 | MS.gene24444:CDS | 50.0% | |
| AGCTTAAGGCGCGTGAGATT+AGG | + | chr1.1:4156382-4156401 | None:intergenic | 50.0% | |
| ATTGTCGGTGAAGCGGCTTA+GGG | - | chr1.1:4156546-4156565 | MS.gene24444:CDS | 50.0% | |
| ATTTGCCGATGTAGATGCCG+CGG | + | chr1.1:4157424-4157443 | None:intergenic | 50.0% | |
| CAAAGGTTAGGGCTACTGTC+CGG | - | chr1.1:4157483-4157502 | MS.gene24444:CDS | 50.0% | |
| CGAACTTACGGATGCTGGAA+TGG | - | chr1.1:4156414-4156433 | MS.gene24444:CDS | 50.0% | |
| GATCATCGGAGAAACCAAGG+CGG | + | chr1.1:4156014-4156033 | None:intergenic | 50.0% | |
| GATGCTAGTGCTAGTGATGG+TGG | - | chr1.1:4157357-4157376 | MS.gene24444:CDS | 50.0% | |
| GATGTTGCAGATCCGGTTGA+CGG | - | chr1.1:4156052-4156071 | MS.gene24444:CDS | 50.0% | |
| GGAGATCATCGGAGAAACCA+AGG | + | chr1.1:4156017-4156036 | None:intergenic | 50.0% | |
| GGATGGAAGGCAAATCGGAT+TGG | - | chr1.1:4156949-4156968 | MS.gene24444:CDS | 50.0% | |
| GGCAAATGGGTGTCCCAATT+TGG | - | chr1.1:4157221-4157240 | MS.gene24444:CDS | 50.0% | |
| TAGGGGAATTGCTGAGACTG+CGG | - | chr1.1:4156564-4156583 | MS.gene24444:CDS | 50.0% | |
| TCGAGGAATTGTCGGTGAAG+CGG | - | chr1.1:4156539-4156558 | MS.gene24444:CDS | 50.0% | |
| TGTAGCTGTGAATCTGGACG+CGG | - | chr1.1:4157317-4157336 | MS.gene24444:CDS | 50.0% | |
| TTACACCTGAAGGTGGGGAT+TGG | - | chr1.1:4157274-4157293 | MS.gene24444:CDS | 50.0% | |
| TTGAGAAGATGGTCAGGTGG+TGG | - | chr1.1:4157528-4157547 | MS.gene24444:CDS | 50.0% | |
| ! | AGGGTGTTACACCTGAAGGT+GGG | - | chr1.1:4157268-4157287 | MS.gene24444:CDS | 50.0% |
| ! | GGGATGGAAGCTTTGGCAAA+TGG | - | chr1.1:4157207-4157226 | MS.gene24444:CDS | 50.0% |
| !! | AAGGGTGTTACACCTGAAGG+TGG | - | chr1.1:4157267-4157286 | MS.gene24444:CDS | 50.0% |
| !! | GATGGTGGAGCACAAGAGAA+TGG | - | chr1.1:4157372-4157391 | MS.gene24444:CDS | 50.0% |
| !! | GCAAATCGGATTGGCGATGA+AGG | - | chr1.1:4156958-4156977 | MS.gene24444:CDS | 50.0% |
| !! | GGATTGGTTGAGGCACACTA+GGG | - | chr1.1:4157290-4157309 | MS.gene24444:CDS | 50.0% |
| AACCAACAGATCCACCGCCT+TGG | - | chr1.1:4155997-4156016 | MS.gene24444:CDS | 55.0% | |
| AACCAAGGCGGTGGATCTGT+TGG | + | chr1.1:4156002-4156021 | None:intergenic | 55.0% | |
| AGTGTTCACTCGTTTGCCGG+CGG | - | chr1.1:4156176-4156195 | MS.gene24444:CDS | 55.0% | |
| ATCGGTTGCCTGCACTTTCC+CGG | + | chr1.1:4155970-4155989 | None:intergenic | 55.0% | |
| CGGTGACGATGTTGCAGATC+CGG | - | chr1.1:4156045-4156064 | MS.gene24444:CDS | 55.0% | |
| CTCAACCAATCCCCACCTTC+AGG | + | chr1.1:4157282-4157301 | None:intergenic | 55.0% | |
| TCGTTACCGTCACCGTCAAC+CGG | + | chr1.1:4156067-4156086 | None:intergenic | 55.0% | |
| TGCAACATCGTCACCGTCGT+CGG | + | chr1.1:4156041-4156060 | None:intergenic | 55.0% | |
| TGTCGCGAACTTACGGATGC+TGG | - | chr1.1:4156409-4156428 | MS.gene24444:CDS | 55.0% | |
| TTGTCGGTGAAGCGGCTTAG+GGG | - | chr1.1:4156547-4156566 | MS.gene24444:CDS | 55.0% | |
| ! | GGGTGTTACACCTGAAGGTG+GGG | - | chr1.1:4157269-4157288 | MS.gene24444:CDS | 55.0% |
| ! | GGTGACGGTAACGACGGAAT+CGG | - | chr1.1:4156073-4156092 | MS.gene24444:CDS | 55.0% |
| ! | GTTGACGGTGACGGTAACGA+CGG | - | chr1.1:4156067-4156086 | MS.gene24444:CDS | 55.0% |
| !! | CTGAAGGTGGGGATTGGTTG+AGG | - | chr1.1:4157280-4157299 | MS.gene24444:CDS | 55.0% |
| !! | GGGATTGGTTGAGGCACACT+AGG | - | chr1.1:4157289-4157308 | MS.gene24444:CDS | 55.0% |
| !!! | GGCGGTGGATCTGTTGGTTT+TGG | + | chr1.1:4155996-4156015 | None:intergenic | 55.0% |
| AACATCGTCACCGTCGTCGG+TGG | + | chr1.1:4156038-4156057 | None:intergenic | 60.0% | |
| CAAGCAGCTTCCACGGTCAC+CGG | - | chr1.1:4155935-4155954 | MS.gene24444:CDS | 60.0% | |
| CACCGACAATTCCTCGAGCG+CGG | + | chr1.1:4156536-4156555 | None:intergenic | 60.0% | |
| CATCGGAGAAACCAAGGCGG+TGG | + | chr1.1:4156011-4156030 | None:intergenic | 60.0% | |
| CCGATGATCTCCACCGACGA+CGG | - | chr1.1:4156025-4156044 | MS.gene24444:CDS | 60.0% | |
| CCGTCGTCGGTGGAGATCAT+CGG | + | chr1.1:4156028-4156047 | None:intergenic | 60.0% | |
| CTTCAACGTGAAGCCACCGC+CGG | + | chr1.1:4156195-4156214 | None:intergenic | 60.0% | |
| GCAGATCCGGTTGACGGTGA+CGG | - | chr1.1:4156058-4156077 | MS.gene24444:CDS | 60.0% | |
| GGGAATTGCTGAGACTGCGG+TGG | - | chr1.1:4156567-4156586 | MS.gene24444:CDS | 60.0% | |
| TGAAAATTGCGCCGCGCTCG+AGG | - | chr1.1:4156522-4156541 | MS.gene24444:CDS | 60.0% | |
| ! | ACTTTCCCGGCGGTTGGTTC+CGG | + | chr1.1:4155957-4155976 | None:intergenic | 60.0% |
| ACTGCGGTGGCTGAGCCGAT+TGG | - | chr1.1:4156580-4156599 | MS.gene24444:CDS | 65.0% | |
| CCGCGCGTGTCGCGAACTTA+CGG | - | chr1.1:4156402-4156421 | MS.gene24444:CDS | 65.0% | |
| CCGTAAGTTCGCGACACGCG+CGG | + | chr1.1:4156405-4156424 | None:intergenic | 65.0% | |
| CGATGTAGATGCCGCGGAGC+CGG | + | chr1.1:4157418-4157437 | None:intergenic | 65.0% | |
| CGCCGCGCTCGAGGAATTGT+CGG | - | chr1.1:4156531-4156550 | MS.gene24444:CDS | 65.0% | |
| CGGCGGTGGCTTCACGTTGA+AGG | - | chr1.1:4156193-4156212 | MS.gene24444:CDS | 65.0% | |
| CGGCTCCGCGGCATCTACAT+CGG | - | chr1.1:4157416-4157435 | MS.gene24444:CDS | 65.0% | |
| CGGTGACCGTGGAAGCTGCT+TGG | + | chr1.1:4155937-4155956 | None:intergenic | 65.0% | |
| GATGTAGATGCCGCGGAGCC+GGG | + | chr1.1:4157417-4157436 | None:intergenic | 65.0% | |
| GGTGGCTGAGCCGATTGGAC+CGG | - | chr1.1:4156585-4156604 | MS.gene24444:CDS | 65.0% | |
| GGTTAGGGCTACTGTCCGGG+AGG | - | chr1.1:4157487-4157506 | MS.gene24444:CDS | 65.0% | |
| GGTTGCCTGCACTTTCCCGG+CGG | + | chr1.1:4155967-4155986 | None:intergenic | 65.0% | |
| GTGGCTGAGCCGATTGGACC+GGG | - | chr1.1:4156586-4156605 | MS.gene24444:CDS | 65.0% | |
| GTTCACTCGTTTGCCGGCGG+TGG | - | chr1.1:4156179-4156198 | MS.gene24444:CDS | 65.0% | |
| TGAGCCGATTGGACCGGGTG+TGG | - | chr1.1:4156591-4156610 | MS.gene24444:CDS | 65.0% | |
| ! | ACCAACCGCCGGGAAAGTGC+AGG | - | chr1.1:4155959-4155978 | MS.gene24444:CDS | 65.0% |
| AACGACGCAGCGGCCACACC+CGG | + | chr1.1:4156607-4156626 | None:intergenic | 70.0% | |
| CGCGACACGCGCGGAGCTTA+AGG | + | chr1.1:4156396-4156415 | None:intergenic | 70.0% | |
| CGGTCACCGGAACCAACCGC+CGG | - | chr1.1:4155948-4155967 | MS.gene24444:CDS | 70.0% | |
| GCCTGCACTTTCCCGGCGGT+TGG | + | chr1.1:4155963-4155982 | None:intergenic | 70.0% | |
| GCGGCCACACCCGGTCCAAT+CGG | + | chr1.1:4156598-4156617 | None:intergenic | 70.0% | |
| GGTCACCGGAACCAACCGCC+GGG | - | chr1.1:4155949-4155968 | MS.gene24444:CDS | 70.0% | |
| GGTGGCACTAGTGCCCGCCA+TGG | - | chr1.1:4157546-4157565 | MS.gene24444:CDS | 70.0% | |
| TCCTGCAATGCCCGGCTCCG+CGG | - | chr1.1:4157404-4157423 | MS.gene24444:CDS | 70.0% | |
| ! | GCGGTTGGTTCCGGTGACCG+TGG | + | chr1.1:4155948-4155967 | None:intergenic | 70.0% |
| !! | GCCGCGGAGCCGGGCATTGC+AGG | + | chr1.1:4157408-4157427 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 4155929 | 4157572 | 4155929 | ID=MS.gene24444 |
| chr1.1 | mRNA | 4155929 | 4157572 | 4155929 | ID=MS.gene24444.t1;Parent=MS.gene24444 |
| chr1.1 | exon | 4155929 | 4157572 | 4155929 | ID=MS.gene24444.t1.exon1;Parent=MS.gene24444.t1 |
| chr1.1 | CDS | 4155929 | 4157572 | 4155929 | ID=cds.MS.gene24444.t1;Parent=MS.gene24444.t1 |
| Gene Sequence |
| Protein sequence |
