AlfalfaGEDB | MS.gene24885

M. sativa cultivar XinJiangDaYe / MS.gene24885

KEGG: K12854
GO: -
PFAM: PF02889.19

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24885.t1	RHN79081.1	94.5	145	8	0	1	145	464	608	3.30E-73	284.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24885.t1	O48534	70.5	139	41	0	1	139	2030	2168	9.0e-56	217.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24885.t1	A0A396JQU6	94.5	145	8	0	1	145	464	608	2.3e-73	284.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049404	MS.gene24885	0.803495	3.39E-49	-1.69E-46
MS.gene050026	MS.gene24885	0.820007	8.61E-53	-1.69E-46
MS.gene050611	MS.gene24885	0.815177	1.06E-51	-1.69E-46
MS.gene051279	MS.gene24885	0.813026	3.15E-51	-1.69E-46
MS.gene051594	MS.gene24885	0.803769	2.98E-49	-1.69E-46
MS.gene051957	MS.gene24885	0.814082	1.85E-51	-1.69E-46
MS.gene052190	MS.gene24885	0.803179	3.94E-49	-1.69E-46
MS.gene052447	MS.gene24885	0.805275	1.44E-49	-1.69E-46
MS.gene052519	MS.gene24885	0.800404	1.46E-48	-1.69E-46
MS.gene053154	MS.gene24885	0.800865	1.18E-48	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24885.t1	MTR_2g064740	86.331	139	19	0	1	139	2048	2186	7.55e-82	262
MS.gene24885.t1	MTR_4g008780	83.448	145	6	1	1	145	764	890	4.22e-78	248
MS.gene24885.t1	MTR_4g011450	82.069	145	6	1	1	145	1948	2072	2.05e-75	244
MS.gene24885.t1	MTR_4g011450	82.069	145	6	1	1	145	1975	2099	2.11e-75	244

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24885.t1	AT2G42270	70.504	139	41	0	1	139	2030	2168	1.19e-68	224
MS.gene24885.t1	AT1G20960	68.571	140	44	0	1	140	2029	2168	1.60e-66	218
MS.gene24885.t1	AT1G20960	68.571	140	44	0	1	140	2029	2168	1.60e-66	218
MS.gene24885.t1	AT3G28870	64.583	48	17	0	92	139	304	351	4.56e-15	70.9
MS.gene24885.t1	AT5G61140	32.759	116	75	2	13	128	2038	2150	9.94e-15	70.5
MS.gene24885.t1	AT5G61140	32.759	116	75	2	13	128	2027	2139	1.06e-14	70.5

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Find 34 sgRNAs with CRISPR-Local

Find 35 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGCTAAGGAGGAGGGATGG+TGG	0.635031	4.1:+84187828	MS.gene24885:CDS
AATATGTGTCACTCTGGAGA+GGG	0.599575	4.1:+84187754	MS.gene24885:CDS
ACTCGTTACTTGCAATTAAG+CGG	0.599217	4.1:+84187876	MS.gene24885:CDS
ACTCTGGAGAGGGATATCGA+CGG	0.757543	4.1:+84187764	MS.gene24885:CDS
AGGTGCAGCAAACTGCAGTT+TGG	0.462926	4.1:-84187924	None:intergenic
ATCGACGGTAAGACAGAAGT+AGG	0.607178	4.1:+84187779	MS.gene24885:CDS
ATGTCCAATAAGTATGAATT+TGG	0.325930	4.1:-84187644	None:intergenic
CAAAAGCTAAGGAGGAGGGA+TGG	0.631038	4.1:+84187825	MS.gene24885:CDS
CAATATGTGTCACTCTGGAG+AGG	0.618178	4.1:+84187753	MS.gene24885:CDS
CACAATGACAGTGTCCGGAC+TGG	0.599754	4.1:+84187719	MS.gene24885:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAGTTTCACTGTTGATGTTA+AGG	+	chr4.1:84188018-84188037	MS.gene24885:CDS	30.0%
TCATACGACAAATCAACATT+AGG	-	chr4.1:84187692-84187711	None:intergenic	30.0%
ACTCGTTACTTGCAATTAAG+CGG	+	chr4.1:84187876-84187895	MS.gene24885:CDS	35.0%
CTTAATTGCAAGTAACGAGT+TGG	-	chr4.1:84187876-84187895	None:intergenic	35.0%
TTGTTATATCATCACCAGTC+CGG	-	chr4.1:84187736-84187755	None:intergenic	35.0%
CTCGTTACTTGCAATTAAGC+GGG	+	chr4.1:84187877-84187896	MS.gene24885:CDS	40.0%
GTTGATGTTAAGGAAGCAGA+TGG	+	chr4.1:84188028-84188047	MS.gene24885:CDS	40.0%
TAGGTATCCAAAAGCTAAGG+AGG	+	chr4.1:84187817-84187836	MS.gene24885:CDS	40.0%
TATCCAAAAGCTAAGGAGGA+GGG	+	chr4.1:84187821-84187840	MS.gene24885:CDS	40.0%
TCCTAGGTATCCAAAAGCTA+AGG	+	chr4.1:84187814-84187833	MS.gene24885:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	84187641	84188078	84187641	ID=MS.gene24885
chr4.1	mRNA	84187641	84188078	84187641	ID=MS.gene24885.t1;Parent=MS.gene24885
chr4.1	exon	84187641	84188078	84187641	ID=MS.gene24885.t1.exon1;Parent=MS.gene24885.t1
chr4.1	CDS	84187641	84188078	84187641	ID=cds.MS.gene24885.t1;Parent=MS.gene24885.t1

Gene Sequence

>MS.gene24885

ATGCCAAATTCATACTTATTGGACATTGCTCGCTTTTGTAATCGCTTTCCTAATGTTGATTTGTCGTATGAAGTACTGCACAATGACAGTGTCCGGACTGGTGATGATATAACAATATGTGTCACTCTGGAGAGGGATATCGACGGTAAGACAGAAGTAGGACCTGTTGATGCTCCTAGGTATCCAAAAGCTAAGGAGGAGGGATGGTGGCTTGTTGTTGGTGATGCCAAAACCAACTCGTTACTTGCAATTAAGCGGGTTTCCTTGCAGCGGAAATTAAAAGCCAAACTGCAGTTTGCTGCACCTGCTGATGCTGGAAAGAAATCTTACATACTTTATTTCATGTGCGACTCATACATGGGTTGTGATCAAGAATATAGTTTCACTGTTGATGTTAAGGAAGCAGATGGTGGCGATAAAGATAGCAGCAAAGAATGA

Protein sequence

>MS.gene24885.t1

MPNSYLLDIARFCNRFPNVDLSYEVLHNDSVRTGDDITICVTLERDIDGKTEVGPVDAPRYPKAKEEGWWLVVGDAKTNSLLAIKRVSLQRKLKAKLQFAAPADAGKKSYILYFMCDSYMGCDQEYSFTVDVKEADGGDKDSSKE