Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25664.t1 | XP_003609971.1 | 95.3 | 253 | 12 | 0 | 1 | 253 | 1 | 253 | 1.40E-124 | 455.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25664.t1 | O65282 | 75.3 | 255 | 59 | 2 | 1 | 253 | 1 | 253 | 6.1e-100 | 365.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25664.t1 | G7JS70 | 95.3 | 253 | 12 | 0 | 1 | 253 | 1 | 253 | 1.0e-124 | 455.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049758 | MS.gene25664 | 0.811934 | 5.46E-51 | -1.69E-46 |
| MS.gene050099 | MS.gene25664 | 0.869443 | 3.08E-66 | -1.69E-46 |
| MS.gene05101 | MS.gene25664 | 0.826902 | 2.10E-54 | -1.69E-46 |
| MS.gene051471 | MS.gene25664 | 0.841454 | 4.71E-58 | -1.69E-46 |
| MS.gene051662 | MS.gene25664 | 0.827162 | 1.82E-54 | -1.69E-46 |
| MS.gene051663 | MS.gene25664 | 0.815438 | 9.24E-52 | -1.69E-46 |
| MS.gene052078 | MS.gene25664 | 0.812466 | 4.18E-51 | -1.69E-46 |
| MS.gene052178 | MS.gene25664 | 0.812887 | 3.38E-51 | -1.69E-46 |
| MS.gene054376 | MS.gene25664 | 0.817272 | 3.59E-52 | -1.69E-46 |
| MS.gene055277 | MS.gene25664 | 0.812161 | 4.87E-51 | -1.69E-46 |
| MS.gene055422 | MS.gene25664 | 0.816369 | 5.73E-52 | -1.69E-46 |
| MS.gene057439 | MS.gene25664 | 0.830933 | 2.22E-55 | -1.69E-46 |
| MS.gene058845 | MS.gene25664 | 0.81104 | 8.54E-51 | -1.69E-46 |
| MS.gene059228 | MS.gene25664 | 0.801626 | 8.24E-49 | -1.69E-46 |
| MS.gene059326 | MS.gene25664 | 0.849382 | 3.35E-60 | -1.69E-46 |
| MS.gene059518 | MS.gene25664 | 0.809138 | 2.19E-50 | -1.69E-46 |
| MS.gene060476 | MS.gene25664 | 0.804579 | 2.02E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene25664 | MS.gene39354 | PPI |
| MS.gene051662 | MS.gene25664 | PPI |
| MS.gene051663 | MS.gene25664 | PPI |
| MS.gene022688 | MS.gene25664 | PPI |
| MS.gene25664 | MS.gene66497 | PPI |
| MS.gene24508 | MS.gene25664 | PPI |
| MS.gene66498 | MS.gene25664 | PPI |
| MS.gene25664 | MS.gene24509 | PPI |
| MS.gene25664 | MS.gene00537 | PPI |
| MS.gene25664 | MS.gene00538 | PPI |
| MS.gene39671 | MS.gene25664 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25664.t1 | MTR_4g124910 | 95.257 | 253 | 12 | 0 | 1 | 253 | 1 | 253 | 1.37e-174 | 481 |
| MS.gene25664.t1 | MTR_2g043230 | 76.378 | 254 | 59 | 1 | 1 | 253 | 1 | 254 | 6.61e-142 | 398 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25664.t1 | AT5G20720 | 75.294 | 255 | 59 | 2 | 1 | 253 | 1 | 253 | 1.20e-135 | 382 |
| MS.gene25664.t1 | AT5G20720 | 75.294 | 255 | 59 | 2 | 1 | 253 | 1 | 253 | 1.20e-135 | 382 |
| MS.gene25664.t1 | AT5G20720 | 75.294 | 255 | 59 | 2 | 1 | 253 | 1 | 253 | 1.20e-135 | 382 |
| MS.gene25664.t1 | AT5G20720 | 75.294 | 255 | 59 | 2 | 1 | 253 | 1 | 253 | 1.20e-135 | 382 |
Find 64 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGTCATTCCCTGCATATT+TGG | 0.259970 | 8.2:-8003640 | None:intergenic |
| AACTGTATTCCCGGGTGAAA+TGG | 0.321202 | 8.2:-8003610 | None:intergenic |
| CCTCGTAACAATGCTAGAAT+TGG | 0.335567 | 8.2:+8001729 | MS.gene25664:CDS |
| TTCCCGGGTGAAATGGATAA+TGG | 0.363835 | 8.2:-8003603 | None:intergenic |
| TTTAAGATCTTTGACCTCTT+CGG | 0.402758 | 8.2:-8002867 | None:intergenic |
| AGGAACCTTTCTTCCTTTGA+AGG | 0.413360 | 8.2:+8001681 | MS.gene25664:CDS |
| GGAGTACAAAACTGTATTCC+CGG | 0.420138 | 8.2:-8003619 | None:intergenic |
| TATCAAGACTCTGTCATTCA+AGG | 0.421253 | 8.2:-8002891 | None:intergenic |
| CCTTCGTCATCCACAGGCCC+TGG | 0.444066 | 8.2:-8003570 | None:intergenic |
| GGCTTTGATTGAGCAGTTGA+TGG | 0.449739 | 8.2:-8002580 | None:intergenic |
| CTGTTGCCTTCGTCATCCAC+AGG | 0.452383 | 8.2:-8003576 | None:intergenic |
| CAGGTGATAGCTGTTGGTCC+AGG | 0.460455 | 8.2:+8003552 | MS.gene25664:intron |
| GAATGACAGAGTCTTGATAA+AGG | 0.473936 | 8.2:+8002895 | MS.gene25664:CDS |
| TTGGAGACGGGAAGACAGTT+GGG | 0.483437 | 8.2:+8002626 | MS.gene25664:CDS |
| GCAATCCTTCAAAGGAAGAA+AGG | 0.496887 | 8.2:-8001686 | None:intergenic |
| GCCAATGGATGGCTTATCCT+TGG | 0.505865 | 8.2:-8003129 | None:intergenic |
| AATGACTTCAAAGGCAAAGA+TGG | 0.508584 | 8.2:+8003654 | MS.gene25664:CDS |
| GAGGTAGTTGCTGTTGGAGA+CGG | 0.521962 | 8.2:+8002613 | MS.gene25664:CDS |
| GTTGGAGACGGGAAGACAGT+TGG | 0.523055 | 8.2:+8002625 | MS.gene25664:CDS |
| TGCTGGTGGTTTGTTGCTCA+CGG | 0.524264 | 8.2:+8003100 | MS.gene25664:CDS |
| ATCAAGACTCTGTCATTCAA+GGG | 0.529761 | 8.2:-8002890 | None:intergenic |
| CTGCTCAATCAAAGCCTCAA+GGG | 0.533192 | 8.2:+8002587 | MS.gene25664:CDS |
| AGGTAGTTGCTGTTGGAGAC+GGG | 0.539082 | 8.2:+8002614 | MS.gene25664:CDS |
| GCCACTAGGTGATAGAGTAC+TGG | 0.539283 | 8.2:+8002510 | MS.gene25664:CDS |
| AAGCTTACCGTGCCAATGGA+TGG | 0.542126 | 8.2:-8003140 | None:intergenic |
| AGAAAAGCTTACCGTGCCAA+TGG | 0.548046 | 8.2:-8003144 | None:intergenic |
| GGAACTGAAGTGGAGTTCAA+TGG | 0.549387 | 8.2:+8002794 | MS.gene25664:CDS |
| AGCTGTTGGTCCAGGGCCTG+TGG | 0.552111 | 8.2:+8003560 | MS.gene25664:CDS |
| GGAAGTTCGCAATCCTTCAA+AGG | 0.561777 | 8.2:-8001694 | None:intergenic |
| GCGGCTTTAACAACAATAGA+CGG | 0.565089 | 8.2:-8001774 | None:intergenic |
| TTCAAAACATCTTATACTGA+AGG | 0.568271 | 8.2:+8002817 | MS.gene25664:CDS |
| CATACAACTGTCAAGCCACT+AGG | 0.568378 | 8.2:+8002496 | MS.gene25664:CDS |
| ACCAAGGATAAGCCATCCAT+TGG | 0.568643 | 8.2:+8003128 | MS.gene25664:CDS |
| TATGCAGGGAATGACTTCAA+AGG | 0.569312 | 8.2:+8003645 | MS.gene25664:CDS |
| TTTGAGAGCCTCAGATGTCA+TGG | 0.571249 | 8.2:+8003692 | MS.gene25664:CDS |
| GAGTACAAAACTGTATTCCC+GGG | 0.572521 | 8.2:-8003618 | None:intergenic |
| CTGAAGGATGATGACATCGT+TGG | 0.572824 | 8.2:+8002833 | MS.gene25664:CDS |
| TGCTCAATCAAAGCCTCAAG+GGG | 0.578517 | 8.2:+8002588 | MS.gene25664:CDS |
| AGGTGATAGCTGTTGGTCCA+GGG | 0.579593 | 8.2:+8003553 | MS.gene25664:intron |
| AAAGTATGCAGGAACTGAAG+TGG | 0.581171 | 8.2:+8002784 | MS.gene25664:CDS |
| ACTGCTCAATCAAAGCCTCA+AGG | 0.582194 | 8.2:+8002586 | MS.gene25664:CDS |
| GTTGTGTACTCAAAGTATGC+AGG | 0.590902 | 8.2:+8002773 | MS.gene25664:CDS |
| AAACCATTATCCATTTCACC+CGG | 0.592297 | 8.2:+8003600 | MS.gene25664:CDS |
| CGGCTTTAACAACAATAGAC+GGG | 0.595648 | 8.2:-8001773 | None:intergenic |
| GGATGCAGAAGAGAAAACTC+AGG | 0.597980 | 8.2:+8002543 | MS.gene25664:CDS |
| ACCAGTACTCTATCACCTAG+TGG | 0.604909 | 8.2:-8002511 | None:intergenic |
| CAAAGTGGACATTAGTGTGA+AGG | 0.607471 | 8.2:+8002654 | MS.gene25664:CDS |
| GAATTGGTATTCTTACACAA+AGG | 0.614844 | 8.2:+8001745 | MS.gene25664:CDS |
| CCAGGGCCTGTGGATGACGA+AGG | 0.620963 | 8.2:+8003570 | MS.gene25664:CDS |
| AAAATAGCCAAAATTAAGAG+AGG | 0.622578 | 8.2:-8003719 | None:intergenic |
| GTTGCTCACGGAAGCAACCA+AGG | 0.626344 | 8.2:+8003112 | MS.gene25664:CDS |
| GAGGATAGCCATGACATCTG+AGG | 0.634831 | 8.2:-8003700 | None:intergenic |
| CCAATTCTAGCATTGTTACG+AGG | 0.641555 | 8.2:-8001729 | None:intergenic |
| AACCATTATCCATTTCACCC+GGG | 0.641591 | 8.2:+8003601 | MS.gene25664:CDS |
| GTTACGAGGAAAATGAATTG+CGG | 0.642882 | 8.2:-8001715 | None:intergenic |
| GGATAAGCCATCCATTGGCA+CGG | 0.647992 | 8.2:+8003133 | MS.gene25664:CDS |
| CTGCTTCATCGATTTCTACG+AGG | 0.656045 | 8.2:+8001661 | MS.gene25664:CDS |
| TGGTATTCTTGAAACCGAAG+AGG | 0.662324 | 8.2:+8002853 | MS.gene25664:CDS |
| GCTGCAGGTTGCAGAAGCTG+AGG | 0.680718 | 8.2:+8003070 | MS.gene25664:intron |
| GATGCAGAAGAGAAAACTCA+GGG | 0.684794 | 8.2:+8002544 | MS.gene25664:CDS |
| ATGTAACAGGTGATAGCTGT+TGG | 0.691284 | 8.2:+8003546 | MS.gene25664:intron |
| GACAGTTGGGAAGAACAAAG+TGG | 0.692016 | 8.2:+8002639 | MS.gene25664:CDS |
| GCAGAAGAGAAAACTCAGGG+TGG | 0.728959 | 8.2:+8002547 | MS.gene25664:CDS |
| GCTCAATCAAAGCCTCAAGG+GGG | 0.730531 | 8.2:+8002589 | MS.gene25664:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATAAAAATAATACCT+TGG | - | chr8.2:8001814-8001833 | None:intergenic | 10.0% |
| !! | AAAAATAAAAATAATACCTT+GGG | - | chr8.2:8001813-8001832 | None:intergenic | 10.0% |
| !!! | AAGGTATTATTTTTATTTTT+TGG | + | chr8.2:8001813-8001832 | MS.gene25664:intron | 10.0% |
| !!! | AGGTATTATTTTTATTTTTT+GGG | + | chr8.2:8001814-8001833 | MS.gene25664:intron | 10.0% |
| !!! | TTTTCAAAAAATTAAAACAA+TGG | + | chr8.2:8003283-8003302 | MS.gene25664:intron | 10.0% |
| !! | AAAATAAAAATAATACCTTG+GGG | - | chr8.2:8001812-8001831 | None:intergenic | 15.0% |
| !! | CGAAAAATATTCATAAATAT+TGG | - | chr8.2:8002291-8002310 | None:intergenic | 15.0% |
| !! | GTTAAGACAAATAATTAAAT+GGG | - | chr8.2:8002977-8002996 | None:intergenic | 15.0% |
| !! | AAATAAAAATAATACCTTGG+GGG | - | chr8.2:8001811-8001830 | None:intergenic | 20.0% |
| !! | AAGTATACTGTTTCAAAAAA+AGG | - | chr8.2:8003175-8003194 | None:intergenic | 20.0% |
| !! | ACAAGATGAAATTACTAATA+AGG | - | chr8.2:8002474-8002493 | None:intergenic | 20.0% |
| !! | CAAAAAATTAAAACAATGGA+TGG | + | chr8.2:8003287-8003306 | MS.gene25664:intron | 20.0% |
| !! | GAAAAATATTCAAAAATGGT+GGG | - | chr8.2:8002265-8002284 | None:intergenic | 20.0% |
| !! | GGTTAAGACAAATAATTAAA+TGG | - | chr8.2:8002978-8002997 | None:intergenic | 20.0% |
| !! | GTCTGAAAAATATTCAAAAA+TGG | - | chr8.2:8002269-8002288 | None:intergenic | 20.0% |
| !! | TGAAAAATATTCAAAAATGG+TGG | - | chr8.2:8002266-8002285 | None:intergenic | 20.0% |
| !! | TTCAGACCAATAAAAAAAAA+GGG | + | chr8.2:8002190-8002209 | MS.gene25664:intron | 20.0% |
| !! | TTTCAGACCAATAAAAAAAA+AGG | + | chr8.2:8002189-8002208 | MS.gene25664:intron | 20.0% |
| !!! | TACATTTTCTCTTATACTAA+GGG | - | chr8.2:8002082-8002101 | None:intergenic | 20.0% |
| !!! | TATTTTTATTTTTTGGGTCA+TGG | + | chr8.2:8001820-8001839 | MS.gene25664:intron | 20.0% |
| ! | TAACACCTTAATGCAAAATA+TGG | - | chr8.2:8002999-8003018 | None:intergenic | 25.0% |
| ! | TGTAATGTATTTCTCTTTAC+AGG | + | chr8.2:8002739-8002758 | MS.gene25664:intron | 25.0% |
| ! | TTCAAAACATCTTATACTGA+AGG | + | chr8.2:8002817-8002836 | MS.gene25664:CDS | 25.0% |
| !! | ACATTTTCTCTTATACTAAG+GGG | - | chr8.2:8002081-8002100 | None:intergenic | 25.0% |
| !! | CTTAACCATATTTTGCATTA+AGG | + | chr8.2:8002991-8003010 | MS.gene25664:intron | 25.0% |
| !! | GTACATTTTCTCTTATACTA+AGG | - | chr8.2:8002083-8002102 | None:intergenic | 25.0% |
| !! | TTTATTTATTGCTTTAGCTC+AGG | + | chr8.2:8003429-8003448 | MS.gene25664:intron | 25.0% |
| AAACACTAGAAATAATCCCA+TGG | - | chr8.2:8002416-8002435 | None:intergenic | 30.0% | |
| AACACTAGAAATAATCCCAT+GGG | - | chr8.2:8002415-8002434 | None:intergenic | 30.0% | |
| AATAAAAAAAAAGGGCAACC+CGG | + | chr8.2:8002198-8002217 | MS.gene25664:intron | 30.0% | |
| AATTAAAACAATGGATGGTC+TGG | + | chr8.2:8003292-8003311 | MS.gene25664:intron | 30.0% | |
| AGAATTGCAAGAATGTGATT+TGG | + | chr8.2:8003256-8003275 | MS.gene25664:intron | 30.0% | |
| CCAAAATAAAAGAAAGACCA+AGG | - | chr8.2:8002714-8002733 | None:intergenic | 30.0% | |
| GAATGGTTATTTACATACCT+AGG | - | chr8.2:8003514-8003533 | None:intergenic | 30.0% | |
| GAATTGCAAGAATGTGATTT+GGG | + | chr8.2:8003257-8003276 | MS.gene25664:intron | 30.0% | |
| GAATTGGTATTCTTACACAA+AGG | + | chr8.2:8001745-8001764 | MS.gene25664:CDS | 30.0% | |
| GCAATGTTATATCGTATGAA+GGG | + | chr8.2:8003224-8003243 | MS.gene25664:intron | 30.0% | |
| GTTGTGTTTATAAGCTATCT+TGG | + | chr8.2:8001933-8001952 | MS.gene25664:intron | 30.0% | |
| TTGAAAGAGCTTATAGCTTA+TGG | - | chr8.2:8002000-8002019 | None:intergenic | 30.0% | |
| ! | AATAACCATTCTACTCCTTT+TGG | + | chr8.2:8003523-8003542 | MS.gene25664:intron | 30.0% |
| ! | CATTAAGGTGTTACGTTTAA+AGG | + | chr8.2:8003006-8003025 | MS.gene25664:intron | 30.0% |
| ! | TGGATTTTCTTCATTATCTG+CGG | + | chr8.2:8001840-8001859 | MS.gene25664:intron | 30.0% |
| ! | TTTAAGATCTTTGACCTCTT+CGG | - | chr8.2:8002870-8002889 | None:intergenic | 30.0% |
| ! | TTTTGTACTCCAAATATGCA+GGG | + | chr8.2:8003631-8003650 | MS.gene25664:CDS | 30.0% |
| !! | CCTTGGTCTTTCTTTTATTT+TGG | + | chr8.2:8002711-8002730 | MS.gene25664:intron | 30.0% |
| !! | TAGAGTACTGGTAAAAATCA+AGG | + | chr8.2:8002522-8002541 | MS.gene25664:CDS | 30.0% |
| !!! | TTGTTTTGATCGAGTAGTTT+TGG | + | chr8.2:8003487-8003506 | MS.gene25664:intron | 30.0% |
| AAACCATTATCCATTTCACC+CGG | + | chr8.2:8003600-8003619 | MS.gene25664:CDS | 35.0% | |
| AAAGAAAGACCAAGGCTTAA+AGG | - | chr8.2:8002706-8002725 | None:intergenic | 35.0% | |
| AACACATTCTACCGTCTTAA+GGG | - | chr8.2:8003384-8003403 | None:intergenic | 35.0% | |
| AATGACTTCAAAGGCAAAGA+TGG | + | chr8.2:8003654-8003673 | MS.gene25664:CDS | 35.0% | |
| ACCTGCAGCATCATAATTAA+AGG | - | chr8.2:8003059-8003078 | None:intergenic | 35.0% | |
| ACTAGCATTATCCCTTAAGA+CGG | + | chr8.2:8003370-8003389 | MS.gene25664:intron | 35.0% | |
| ATCAAGACTCTGTCATTCAA+GGG | - | chr8.2:8002893-8002912 | None:intergenic | 35.0% | |
| ATCTCATAATGCACTTGAGT+GGG | - | chr8.2:8002026-8002045 | None:intergenic | 35.0% | |
| ATGTATTTCTCTTTACAGGC+AGG | + | chr8.2:8002743-8002762 | MS.gene25664:intron | 35.0% | |
| GAATGACAGAGTCTTGATAA+AGG | + | chr8.2:8002895-8002914 | MS.gene25664:CDS | 35.0% | |
| GGCAATGTTATATCGTATGA+AGG | + | chr8.2:8003223-8003242 | MS.gene25664:intron | 35.0% | |
| GTTACGAGGAAAATGAATTG+CGG | - | chr8.2:8001718-8001737 | None:intergenic | 35.0% | |
| TAAAGGATTCCATAAGCTAG+TGG | - | chr8.2:8002689-8002708 | None:intergenic | 35.0% | |
| TACATCCAAAAGGAGTAGAA+TGG | - | chr8.2:8003531-8003550 | None:intergenic | 35.0% | |
| TATCAAGACTCTGTCATTCA+AGG | - | chr8.2:8002894-8002913 | None:intergenic | 35.0% | |
| TATCACCTGTTACATCCAAA+AGG | - | chr8.2:8003541-8003560 | None:intergenic | 35.0% | |
| TATCTCATAATGCACTTGAG+TGG | - | chr8.2:8002027-8002046 | None:intergenic | 35.0% | |
| TGTTATATCGTATGAAGGGA+AGG | + | chr8.2:8003228-8003247 | MS.gene25664:intron | 35.0% | |
| TTATGGAATCCTTTAAGCCT+TGG | + | chr8.2:8002694-8002713 | MS.gene25664:intron | 35.0% | |
| ! | AACACCACTCTTCTAAAAGA+GGG | + | chr8.2:8003202-8003221 | MS.gene25664:intron | 35.0% |
| ! | GTTTTGTACTCCAAATATGC+AGG | + | chr8.2:8003630-8003649 | MS.gene25664:CDS | 35.0% |
| ! | TAACACCACTCTTCTAAAAG+AGG | + | chr8.2:8003201-8003220 | MS.gene25664:intron | 35.0% |
| !!! | GGGTTGCCCTTTTTTTTTAT+TGG | - | chr8.2:8002199-8002218 | None:intergenic | 35.0% |
| AAAGTATGCAGGAACTGAAG+TGG | + | chr8.2:8002784-8002803 | MS.gene25664:CDS | 40.0% | |
| AACCATTATCCATTTCACCC+GGG | + | chr8.2:8003601-8003620 | MS.gene25664:CDS | 40.0% | |
| ACAGAGTCTTGATAAAGGTG+TGG | + | chr8.2:8002900-8002919 | MS.gene25664:intron | 40.0% | |
| AGAAATAATCCCATGGGACA+GGG | - | chr8.2:8002409-8002428 | None:intergenic | 40.0% | |
| AGGAACCTTTCTTCCTTTGA+AGG | + | chr8.2:8001681-8001700 | MS.gene25664:CDS | 40.0% | |
| ATGTAACAGGTGATAGCTGT+TGG | + | chr8.2:8003546-8003565 | MS.gene25664:intron | 40.0% | |
| CAAAGTGGACATTAGTGTGA+AGG | + | chr8.2:8002654-8002673 | MS.gene25664:CDS | 40.0% | |
| CAACACATTCTACCGTCTTA+AGG | - | chr8.2:8003385-8003404 | None:intergenic | 40.0% | |
| CCAATTCTAGCATTGTTACG+AGG | - | chr8.2:8001732-8001751 | None:intergenic | 40.0% | |
| CCTCGTAACAATGCTAGAAT+TGG | + | chr8.2:8001729-8001748 | MS.gene25664:CDS | 40.0% | |
| GAAGTCATTCCCTGCATATT+TGG | - | chr8.2:8003643-8003662 | None:intergenic | 40.0% | |
| GAGTACAAAACTGTATTCCC+GGG | - | chr8.2:8003621-8003640 | None:intergenic | 40.0% | |
| GATGCAGAAGAGAAAACTCA+GGG | + | chr8.2:8002544-8002563 | MS.gene25664:CDS | 40.0% | |
| GCAATCCTTCAAAGGAAGAA+AGG | - | chr8.2:8001689-8001708 | None:intergenic | 40.0% | |
| GCCTTTAATTATGATGCTGC+AGG | + | chr8.2:8003055-8003074 | MS.gene25664:intron | 40.0% | |
| GGAGTACAAAACTGTATTCC+CGG | - | chr8.2:8003622-8003641 | None:intergenic | 40.0% | |
| GTTGTGTACTCAAAGTATGC+AGG | + | chr8.2:8002773-8002792 | MS.gene25664:CDS | 40.0% | |
| TAGAAATAATCCCATGGGAC+AGG | - | chr8.2:8002410-8002429 | None:intergenic | 40.0% | |
| TATGCAGGGAATGACTTCAA+AGG | + | chr8.2:8003645-8003664 | MS.gene25664:CDS | 40.0% | |
| TGGTATTCTTGAAACCGAAG+AGG | + | chr8.2:8002853-8002872 | MS.gene25664:CDS | 40.0% | |
| ! | ATTGCTTTAGCTCAGGTCAT+TGG | + | chr8.2:8003436-8003455 | MS.gene25664:intron | 40.0% |
| ! | CGGCTTTAACAACAATAGAC+GGG | - | chr8.2:8001776-8001795 | None:intergenic | 40.0% |
| ! | CTACTCCTTTTGGATGTAAC+AGG | + | chr8.2:8003533-8003552 | MS.gene25664:intron | 40.0% |
| ! | GCGGCTTTAACAACAATAGA+CGG | - | chr8.2:8001777-8001796 | None:intergenic | 40.0% |
| ! | TTTAGCTCAGGTCATTGGTT+TGG | + | chr8.2:8003441-8003460 | MS.gene25664:intron | 40.0% |
| !! | ATTGCCCTCTTTTAGAAGAG+TGG | - | chr8.2:8003209-8003228 | None:intergenic | 40.0% |
| AACTGTATTCCCGGGTGAAA+TGG | - | chr8.2:8003613-8003632 | None:intergenic | 45.0% | |
| ACCAAGGATAAGCCATCCAT+TGG | + | chr8.2:8003128-8003147 | MS.gene25664:CDS | 45.0% | |
| ACCAGTACTCTATCACCTAG+TGG | - | chr8.2:8002514-8002533 | None:intergenic | 45.0% | |
| ACTGCTCAATCAAAGCCTCA+AGG | + | chr8.2:8002586-8002605 | MS.gene25664:CDS | 45.0% | |
| AGAAAAGCTTACCGTGCCAA+TGG | - | chr8.2:8003147-8003166 | None:intergenic | 45.0% | |
| ATACATAAGCCCTGTCCCAT+GGG | + | chr8.2:8002397-8002416 | MS.gene25664:intron | 45.0% | |
| CATACAACTGTCAAGCCACT+AGG | + | chr8.2:8002496-8002515 | MS.gene25664:CDS | 45.0% | |
| CTACAGCGAGAGATCAAAGT+AGG | + | chr8.2:8002131-8002150 | MS.gene25664:intron | 45.0% | |
| CTGAAGGATGATGACATCGT+TGG | + | chr8.2:8002833-8002852 | MS.gene25664:CDS | 45.0% | |
| CTGCTCAATCAAAGCCTCAA+GGG | + | chr8.2:8002587-8002606 | MS.gene25664:CDS | 45.0% | |
| GAAGCTGAGGAAAAAACTGC+TGG | + | chr8.2:8003083-8003102 | MS.gene25664:CDS | 45.0% | |
| GACAGTTGGGAAGAACAAAG+TGG | + | chr8.2:8002639-8002658 | MS.gene25664:CDS | 45.0% | |
| GGAACTGAAGTGGAGTTCAA+TGG | + | chr8.2:8002794-8002813 | MS.gene25664:CDS | 45.0% | |
| GGAAGTTCGCAATCCTTCAA+AGG | - | chr8.2:8001697-8001716 | None:intergenic | 45.0% | |
| GGATGCAGAAGAGAAAACTC+AGG | + | chr8.2:8002543-8002562 | MS.gene25664:CDS | 45.0% | |
| GGGATAATGCTAGTTGCTAC+AGG | - | chr8.2:8003364-8003383 | None:intergenic | 45.0% | |
| TATACATAAGCCCTGTCCCA+TGG | + | chr8.2:8002396-8002415 | MS.gene25664:intron | 45.0% | |
| TGCTCAATCAAAGCCTCAAG+GGG | + | chr8.2:8002588-8002607 | MS.gene25664:CDS | 45.0% | |
| TTCCCGGGTGAAATGGATAA+TGG | - | chr8.2:8003606-8003625 | None:intergenic | 45.0% | |
| TTTGAGAGCCTCAGATGTCA+TGG | + | chr8.2:8003692-8003711 | MS.gene25664:CDS | 45.0% | |
| ! | GGCTTTGATTGAGCAGTTGA+TGG | - | chr8.2:8002583-8002602 | None:intergenic | 45.0% |
| ! | TGAGTGATGCCACTAGCTTA+TGG | + | chr8.2:8002677-8002696 | MS.gene25664:intron | 45.0% |
| !! | CTGCTTCATCGATTTCTACG+AGG | + | chr8.2:8001661-8001680 | MS.gene25664:CDS | 45.0% |
| !!! | GATCGAGTAGTTTTGGTCCT+AGG | + | chr8.2:8003494-8003513 | MS.gene25664:intron | 45.0% |
| AAGCTTACCGTGCCAATGGA+TGG | - | chr8.2:8003143-8003162 | None:intergenic | 50.0% | |
| AGGTGATAGCTGTTGGTCCA+GGG | + | chr8.2:8003553-8003572 | MS.gene25664:intron | 50.0% | |
| GAGGATAGCCATGACATCTG+AGG | - | chr8.2:8003703-8003722 | None:intergenic | 50.0% | |
| GCAGAAGAGAAAACTCAGGG+TGG | + | chr8.2:8002547-8002566 | MS.gene25664:CDS | 50.0% | |
| GCCAATGGATGGCTTATCCT+TGG | - | chr8.2:8003132-8003151 | None:intergenic | 50.0% | |
| GCCACTAGGTGATAGAGTAC+TGG | + | chr8.2:8002510-8002529 | MS.gene25664:CDS | 50.0% | |
| GCTCAATCAAAGCCTCAAGG+GGG | + | chr8.2:8002589-8002608 | MS.gene25664:CDS | 50.0% | |
| GCTGAGGAAAAAACTGCTGG+TGG | + | chr8.2:8003086-8003105 | MS.gene25664:CDS | 50.0% | |
| GGATAAGCCATCCATTGGCA+CGG | + | chr8.2:8003133-8003152 | MS.gene25664:CDS | 50.0% | |
| GGGCAGATCATCAAGACAAC+TGG | - | chr8.2:8002957-8002976 | None:intergenic | 50.0% | |
| TACCTTGGGGGTAACAACAG+TGG | - | chr8.2:8001799-8001818 | None:intergenic | 50.0% | |
| TTGGAGACGGGAAGACAGTT+GGG | + | chr8.2:8002626-8002645 | MS.gene25664:CDS | 50.0% | |
| ! | AGGTAGTTGCTGTTGGAGAC+GGG | + | chr8.2:8002614-8002633 | MS.gene25664:CDS | 50.0% |
| ! | GAGGTAGTTGCTGTTGGAGA+CGG | + | chr8.2:8002613-8002632 | MS.gene25664:CDS | 50.0% |
| !! | TGCTGGTGGTTTGTTGCTCA+CGG | + | chr8.2:8003100-8003119 | MS.gene25664:CDS | 50.0% |
| ACTAAAGCTCCCGCATACGC+GGG | + | chr8.2:8002224-8002243 | MS.gene25664:intron | 55.0% | |
| ATCAAAGCCTCAAGGGGGTG+AGG | + | chr8.2:8002594-8002613 | MS.gene25664:CDS | 55.0% | |
| CACTAAAGCTCCCGCATACG+CGG | + | chr8.2:8002223-8002242 | MS.gene25664:intron | 55.0% | |
| CAGGTGATAGCTGTTGGTCC+AGG | + | chr8.2:8003552-8003571 | MS.gene25664:intron | 55.0% | |
| CTGTTGCCTTCGTCATCCAC+AGG | - | chr8.2:8003579-8003598 | None:intergenic | 55.0% | |
| CTTGGGGGTAACAACAGTGG+CGG | - | chr8.2:8001796-8001815 | None:intergenic | 55.0% | |
| GTTGCTCACGGAAGCAACCA+AGG | + | chr8.2:8003112-8003131 | MS.gene25664:CDS | 55.0% | |
| GTTGGAGACGGGAAGACAGT+TGG | + | chr8.2:8002625-8002644 | MS.gene25664:CDS | 55.0% | |
| ! | ATGCGGGAGCTTTAGTGCAC+CGG | - | chr8.2:8002220-8002239 | None:intergenic | 55.0% |
| CGCCACTGTTGTTACCCCCA+AGG | + | chr8.2:8001794-8001813 | MS.gene25664:CDS | 60.0% | |
| CTAAAGCTCCCGCATACGCG+GGG | + | chr8.2:8002225-8002244 | MS.gene25664:intron | 60.0% | |
| GCAACTACCTCACCCCCTTG+AGG | - | chr8.2:8002604-8002623 | None:intergenic | 60.0% | |
| GCTGCAGGTTGCAGAAGCTG+AGG | + | chr8.2:8003070-8003089 | MS.gene25664:intron | 60.0% | |
| GGGGGTGAGGTAGTTGCTGT+TGG | + | chr8.2:8002607-8002626 | MS.gene25664:CDS | 60.0% | |
| ! | AAATGGTGGGACCCCCTTCC+CGG | - | chr8.2:8002252-8002271 | None:intergenic | 60.0% |
| ! | TGCGGGAGCTTTAGTGCACC+GGG | - | chr8.2:8002219-8002238 | None:intergenic | 60.0% |
| AGCTGTTGGTCCAGGGCCTG+TGG | + | chr8.2:8003560-8003579 | MS.gene25664:CDS | 65.0% | |
| CCAGGGCCTGTGGATGACGA+AGG | + | chr8.2:8003570-8003589 | MS.gene25664:CDS | 65.0% | |
| CCTTCGTCATCCACAGGCCC+TGG | - | chr8.2:8003573-8003592 | None:intergenic | 65.0% | |
| ATACGCGGGGTCCGGGAAGG+GGG | + | chr8.2:8002238-8002257 | MS.gene25664:intron | 70.0% | |
| CATACGCGGGGTCCGGGAAG+GGG | + | chr8.2:8002237-8002256 | MS.gene25664:intron | 70.0% | |
| CTTCCCGGACCCCGCGTATG+CGG | - | chr8.2:8002237-8002256 | None:intergenic | 70.0% | |
| GCATACGCGGGGTCCGGGAA+GGG | + | chr8.2:8002236-8002255 | MS.gene25664:intron | 70.0% | |
| TTCCCGGACCCCGCGTATGC+GGG | - | chr8.2:8002236-8002255 | None:intergenic | 70.0% | |
| CGCATACGCGGGGTCCGGGA+AGG | + | chr8.2:8002235-8002254 | MS.gene25664:intron | 75.0% | |
| CTCCCGCATACGCGGGGTCC+GGG | + | chr8.2:8002231-8002250 | MS.gene25664:intron | 75.0% | |
| GCTCCCGCATACGCGGGGTC+CGG | + | chr8.2:8002230-8002249 | MS.gene25664:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 8001642 | 8003728 | 8001642 | ID=MS.gene25664 |
| chr8.2 | mRNA | 8001642 | 8003728 | 8001642 | ID=MS.gene25664.t1;Parent=MS.gene25664 |
| chr8.2 | exon | 8001642 | 8001815 | 8001642 | ID=MS.gene25664.t1.exon1;Parent=MS.gene25664.t1 |
| chr8.2 | CDS | 8001642 | 8001815 | 8001642 | ID=cds.MS.gene25664.t1;Parent=MS.gene25664.t1 |
| chr8.2 | exon | 8002496 | 8002675 | 8002496 | ID=MS.gene25664.t1.exon2;Parent=MS.gene25664.t1 |
| chr8.2 | CDS | 8002496 | 8002675 | 8002496 | ID=cds.MS.gene25664.t1;Parent=MS.gene25664.t1 |
| chr8.2 | exon | 8002761 | 8002916 | 8002761 | ID=MS.gene25664.t1.exon3;Parent=MS.gene25664.t1 |
| chr8.2 | CDS | 8002761 | 8002916 | 8002761 | ID=cds.MS.gene25664.t1;Parent=MS.gene25664.t1 |
| chr8.2 | exon | 8003077 | 8003154 | 8003077 | ID=MS.gene25664.t1.exon4;Parent=MS.gene25664.t1 |
| chr8.2 | CDS | 8003077 | 8003154 | 8003077 | ID=cds.MS.gene25664.t1;Parent=MS.gene25664.t1 |
| chr8.2 | exon | 8003555 | 8003728 | 8003555 | ID=MS.gene25664.t1.exon5;Parent=MS.gene25664.t1 |
| chr8.2 | CDS | 8003555 | 8003728 | 8003555 | ID=cds.MS.gene25664.t1;Parent=MS.gene25664.t1 |
| Gene Sequence |
| Protein sequence |
