AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene26487

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26487.t1 MTR_7g106320 97.001 667 13 1 1 667 1 660 0.0 1337
MS.gene26487.t1 MTR_1g057790 66.909 689 166 20 1 667 1 649 0.0 812
MS.gene26487.t1 MTR_4g051532 45.455 759 274 24 1 667 1 711 2.73e-164 488
MS.gene26487.t1 MTR_1g023050 56.146 301 97 8 153 433 146 431 5.95e-100 319
MS.gene26487.t1 MTR_3g112300 54.676 278 94 6 172 435 163 422 2.39e-92 296
MS.gene26487.t1 MTR_3g112300 54.676 278 94 6 172 435 163 422 1.38e-91 296
MS.gene26487.t1 MTR_8g078480 53.929 280 122 2 172 447 389 665 1.92e-86 289
MS.gene26487.t1 MTR_5g018860 46.061 330 156 4 172 490 339 657 2.27e-86 286
MS.gene26487.t1 MTR_8g098815 52.416 269 115 4 160 421 170 432 1.30e-80 268
MS.gene26487.t1 MTR_3g112300 52.419 248 86 6 172 405 163 392 6.67e-75 246
MS.gene26487.t1 MTR_3g112290 46.622 296 129 7 169 451 163 442 2.31e-71 238
MS.gene26487.t1 MTR_4g019450 44.108 297 123 6 175 464 200 460 4.25e-64 223
MS.gene26487.t1 MTR_7g065050 43.796 274 129 6 175 445 141 392 3.76e-62 216
MS.gene26487.t1 MTR_3g112300 49.780 227 82 6 172 384 163 371 7.76e-62 211
MS.gene26487.t1 MTR_2g095050 38.253 332 165 7 118 430 201 511 1.97e-61 216
MS.gene26487.t1 MTR_1g016490 38.519 270 132 7 172 427 244 493 1.95e-48 178
MS.gene26487.t1 MTR_7g114930 67.568 37 12 0 547 583 9 45 1.08e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26487.t1 AT2G35940 48.529 748 236 32 1 667 1 680 7.49e-169 499
MS.gene26487.t1 AT2G35940 48.529 748 236 32 1 667 1 680 7.49e-169 499
MS.gene26487.t1 AT2G35940 48.529 748 236 32 1 667 1 680 7.49e-169 499
MS.gene26487.t1 AT2G16400 52.769 307 113 5 163 455 98 386 1.13e-96 306
MS.gene26487.t1 AT4G34610 52.308 325 129 7 132 446 94 402 1.62e-92 297
MS.gene26487.t1 AT4G34610 52.308 325 129 7 132 446 94 402 1.62e-92 297
MS.gene26487.t1 AT4G34610 52.308 325 129 7 132 446 94 402 1.62e-92 297
MS.gene26487.t1 AT4G34610 52.308 325 129 7 132 446 94 402 1.62e-92 297
MS.gene26487.t1 AT1G75410 53.608 291 114 7 172 458 168 441 3.13e-92 296
MS.gene26487.t1 AT1G75410 53.608 291 114 7 172 458 168 441 3.13e-92 296
MS.gene26487.t1 AT1G19700 55.017 289 112 8 162 441 156 435 2.54e-89 288
MS.gene26487.t1 AT1G19700 55.017 289 112 8 162 441 156 435 2.54e-89 288
MS.gene26487.t1 AT1G19700 55.017 289 112 8 162 441 156 435 2.54e-89 288
MS.gene26487.t1 AT1G19700 55.017 289 112 8 162 441 156 435 2.54e-89 288
MS.gene26487.t1 AT1G19700 55.017 289 112 8 162 441 156 435 2.54e-89 288
MS.gene26487.t1 AT2G27220 51.211 289 98 7 157 442 64 312 3.44e-82 266
MS.gene26487.t1 AT2G27220 51.211 289 98 7 157 442 64 312 3.44e-82 266
MS.gene26487.t1 AT4G36870 49.502 301 124 5 170 449 310 603 2.85e-79 267
MS.gene26487.t1 AT4G36870 49.502 301 124 5 170 449 310 603 2.85e-79 267
MS.gene26487.t1 AT2G27220 48.208 307 98 8 157 442 64 330 2.17e-78 257
MS.gene26487.t1 AT2G23760 50.758 264 117 3 169 425 234 491 2.98e-76 256
MS.gene26487.t1 AT2G23760 50.758 264 117 3 169 425 234 491 2.98e-76 256
MS.gene26487.t1 AT2G23760 50.758 264 117 3 169 425 234 491 2.98e-76 256
MS.gene26487.t1 AT5G41410 44.795 317 161 5 170 472 192 508 5.11e-76 255
MS.gene26487.t1 AT1G75410 53.361 238 95 6 172 405 168 393 2.62e-73 242
MS.gene26487.t1 AT2G23760 42.405 316 117 4 169 425 234 543 3.61e-66 230
MS.gene26487.t1 AT4G36870 49.180 244 110 4 170 406 310 546 4.03e-63 219
MS.gene26487.t1 AT4G36870 48.347 242 111 4 170 404 310 544 6.17e-62 216
MS.gene26487.t1 AT1G75430 40.830 289 143 7 172 448 17 289 1.18e-60 205
MS.gene26487.t1 AT5G02030 54.595 185 75 3 253 428 234 418 3.14e-57 204
MS.gene26487.t1 AT4G32980 39.700 267 142 5 172 437 202 450 6.71e-52 187
MS.gene26487.t1 AT4G32980 39.700 267 142 5 172 437 202 450 6.71e-52 187
MS.gene26487.t1 AT2G27990 38.081 344 158 12 106 430 189 496 2.59e-51 187
MS.gene26487.t1 AT1G75430 34.177 237 107 5 172 384 17 228 3.37e-32 126
MS.gene26487.t1 AT2G27990 31.879 298 148 12 106 384 189 450 5.24e-25 108

Find 173 sgRNAs with CRISPR-Local

Find 281 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTGAGTTCAAAGTATTTA+AGG 0.159295 7.3:-7855203 MS.gene26487:CDS
TTAACATCAATGAAACTATT+AGG 0.199947 7.3:+7851975 None:intergenic
ATCTTTCAGGCAATCCTCTT+TGG 0.211678 7.3:+7852843 None:intergenic
TATTGGAGTTTCTTGGCTTT+TGG 0.214418 7.3:+7852142 None:intergenic
TCTTTCAGGCAATCCTCTTT+GGG 0.217697 7.3:+7852844 None:intergenic
ACAAACTTCATTGGTGGATT+TGG 0.243688 7.3:-7851864 MS.gene26487:CDS
AACTGTGCAGCAAACCTCTT+TGG 0.253744 7.3:+7851609 None:intergenic
TAAAGCTACAAATAAGAGTT+TGG 0.254411 7.3:-7852987 MS.gene26487:CDS
TTCTTCCTAGTTGAATGTTT+TGG 0.269559 7.3:+7851712 None:intergenic
CAGAAATTATTGGAGTTTCT+TGG 0.275903 7.3:+7852135 None:intergenic
AATTCAGGATTCAGCTTCAT+TGG 0.282072 7.3:-7852068 MS.gene26487:CDS
GAGGAACTATCAATGAAATT+TGG 0.286124 7.3:-7851933 MS.gene26487:CDS
GGTCTAGAAACAGAAATTAT+TGG 0.288557 7.3:+7852125 None:intergenic
ATGAAGGAAAATGAACTAAA+TGG 0.289721 7.3:-7852284 MS.gene26487:CDS
GTATCACGCGCCGCCGTGTT+TGG 0.299903 7.3:+7855360 None:intergenic
CGCCGCCGCCACCACTTGAT+TGG 0.300629 7.3:+7855682 None:intergenic
AATTGCAACAGGTTTCAAAT+TGG 0.308221 7.3:-7852367 MS.gene26487:intron
GGAAATGTTAGAAACAATTC+AGG 0.311379 7.3:-7852083 MS.gene26487:CDS
GGTTCGCCGTCTCCGGCTTC+TGG 0.313206 7.3:-7855267 MS.gene26487:CDS
GGAGGAGATGGATCAATAAT+TGG 0.316947 7.3:-7855063 MS.gene26487:CDS
CTGTTTCTGTTCTTCGTGCT+TGG 0.318849 7.3:-7852820 MS.gene26487:CDS
CAATACCCAATTGGTGATAT+TGG 0.320766 7.3:-7851840 MS.gene26487:CDS
CAAAACAAACAGGGCTTACT+AGG 0.321411 7.3:-7852480 MS.gene26487:CDS
TAACATCAATGAAACTATTA+GGG 0.331113 7.3:+7851976 None:intergenic
ACAACGTGCTCTACAACAAT+TGG 0.343052 7.3:-7852894 MS.gene26487:CDS
GAATAATAACAATGGGAATC+CGG 0.361123 7.3:-7855235 MS.gene26487:CDS
TAGGGTTATGCATAAGTTCA+TGG 0.365082 7.3:+7851994 None:intergenic
ATTATTTAGGACACAAAATC+TGG 0.366418 7.3:+7851582 None:intergenic
ATAAGTGAACCAAATGAGTT+TGG 0.373207 7.3:-7851681 MS.gene26487:CDS
CACATGCTTGCAAAACAAAC+AGG 0.376982 7.3:-7852490 MS.gene26487:CDS
CGTCATGGTGCGCGTGGATT+TGG 0.380286 7.3:+7855445 None:intergenic
GGTGAAGAGGATTGCTTTGG+AGG 0.380432 7.3:-7852965 MS.gene26487:CDS
TGTCCTAGCTGAACCGATTC+CGG 0.381221 7.3:+7853081 None:intergenic
TTGGGTGAAGAGGATTGCTT+TGG 0.382173 7.3:-7852968 MS.gene26487:CDS
TTTATAGAACCAAACTCATT+TGG 0.385263 7.3:+7851672 None:intergenic
TGTGAATAGTGGTGTTGAAT+TGG 0.390097 7.3:-7855148 MS.gene26487:CDS
AACCTACCAATATCACCAAT+TGG 0.390271 7.3:+7851834 None:intergenic
ATTGGATCATCAGAACTAGA+AGG 0.393321 7.3:-7852050 MS.gene26487:CDS
AAAGCTACAAATAAGAGTTT+GGG 0.393739 7.3:-7852986 MS.gene26487:CDS
TGTGTGGAATTGTAACCTTT+AGG 0.394460 7.3:+7852173 None:intergenic
GAGGTAAAATTGAAGGTTCA+AGG 0.397374 7.3:-7852946 MS.gene26487:CDS
ACTGTGCAGCAAACCTCTTT+GGG 0.397435 7.3:+7851610 None:intergenic
TATCACGCGCCGCCGTGTTT+GGG 0.400157 7.3:+7855361 None:intergenic
TGGTGTTGTTGGTGGTTAAG+AGG 0.400409 7.3:+7855465 None:intergenic
TGCATAAGTTCATGGTTCCT+TGG 0.400560 7.3:+7852002 None:intergenic
GCAAGATTCGTTTCTATGTC+TGG 0.404625 7.3:-7855291 MS.gene26487:CDS
GACATAGAAACGAATCTTGC+CGG 0.407425 7.3:+7855294 None:intergenic
TAAATGCTCGAGTCAGGCTT+TGG 0.408513 7.3:-7852340 MS.gene26487:CDS
GCGCGTGGATTTGGTGTTGT+TGG 0.411629 7.3:+7855454 None:intergenic
TCTGAGTTCAAAGTATTTAA+GGG 0.411868 7.3:-7855202 MS.gene26487:CDS
GTTGAGGAAAACATAGTTAC+CGG 0.412150 7.3:+7855560 None:intergenic
GGAATGAGCAAGGTGAATAT+TGG 0.415474 7.3:-7855108 MS.gene26487:CDS
ATCCACCAATGAAGTTTGTT+CGG 0.420175 7.3:+7851868 None:intergenic
GGTTTATAAATGCTCGAGTC+AGG 0.425092 7.3:-7852346 MS.gene26487:CDS
GGGGTCTCCAAGCGTTATGC+TGG 0.431536 7.3:+7852864 None:intergenic
AGAACAGAAACAGATCTTTC+AGG 0.435978 7.3:+7852830 None:intergenic
CTTGGTCTTGATTCAATACA+AGG 0.436754 7.3:-7851759 MS.gene26487:CDS
AATAATAACAATGGGAATCC+GGG 0.437333 7.3:-7855234 MS.gene26487:CDS
TCAATAATTGGTGGTGGGGA+GGG 0.443667 7.3:-7855051 MS.gene26487:CDS
GTGAATATTGGAGAATCATC+AGG 0.448018 7.3:-7855096 MS.gene26487:CDS
TTCGAACAAGCCGCCGGAAT+CGG 0.449398 7.3:-7853094 MS.gene26487:CDS
ATTGGTGGTGGGGAGGGAAG+TGG 0.452026 7.3:-7855045 MS.gene26487:CDS
ATCAATAATTGGTGGTGGGG+AGG 0.457926 7.3:-7855052 MS.gene26487:CDS
AAACAATCTCAAAGCAGTTT+CGG 0.458580 7.3:-7853039 MS.gene26487:CDS
TGCTTTGGAGGTAAAATTGA+AGG 0.465481 7.3:-7852953 MS.gene26487:CDS
AAACCACAACCTCCATTTGA+TGG 0.467737 7.3:+7853122 None:intergenic
GTCTGGTGGTTCGCCGTCTC+CGG 0.468228 7.3:-7855274 MS.gene26487:CDS
GGAAACCGAACAAACTTCAT+TGG 0.468666 7.3:-7851873 MS.gene26487:CDS
GTGAATAGTGGTGTTGAATT+GGG 0.472967 7.3:-7855147 MS.gene26487:CDS
TGTTTGAAAGATGCAATAAC+AGG 0.474143 7.3:-7853016 MS.gene26487:CDS
CCACAATCATCACCACTTGT+TGG 0.474765 7.3:-7852104 MS.gene26487:CDS
ATGTTGATACTTTCATATTG+AGG 0.481269 7.3:+7851639 None:intergenic
CACACATGCAGTACAATCAA+TGG 0.483257 7.3:-7855395 MS.gene26487:CDS
ATGTGCTTGTCTGAATCCTT+TGG 0.484894 7.3:+7852508 None:intergenic
AATAATGTTTCACTCACTCT+TGG 0.485275 7.3:-7851777 MS.gene26487:CDS
CAACCTTCTCATGCCGCTGC+CGG 0.488739 7.3:-7855579 MS.gene26487:CDS
TCAGAATATTGTATATAGCC+TGG 0.489333 7.3:+7855627 None:intergenic
TTACAACGAATAATAACAAT+GGG 0.489888 7.3:-7855242 MS.gene26487:CDS
GACGTTGTACCTTCTTTGCA+TGG 0.491466 7.3:-7855426 MS.gene26487:CDS
AGTGGTGGCGGCGGCGCCGA+CGG 0.491733 7.3:-7855675 MS.gene26487:CDS
CCATGATAGTACGTTGCCAT+TGG 0.498403 7.3:+7855720 None:intergenic
CCACCATCAAATGGAGGTTG+TGG 0.501135 7.3:-7853125 MS.gene26487:CDS
ACCTACCAATATCACCAATT+GGG 0.505940 7.3:+7851835 None:intergenic
CAGACAGTACCACCATCAAA+TGG 0.506484 7.3:-7853134 MS.gene26487:CDS
AACAGGGCTTACTAGGAGTC+AGG 0.508298 7.3:-7852473 MS.gene26487:intron
AACCGAACAAACTTCATTGG+TGG 0.508445 7.3:-7851870 MS.gene26487:CDS
ACCTTTAGGTTCTGTTTCAG+AGG 0.511607 7.3:+7852187 None:intergenic
ACGTACATTTCTTCCACCAT+TGG 0.511797 7.3:+7852314 None:intergenic
TTTCTAACATTTCCAACAAG+TGG 0.513849 7.3:+7852092 None:intergenic
ATCCAATCAAGTGGTGGCGG+CGG 0.518066 7.3:-7855684 MS.gene26487:CDS
GAACTCAGAATCTGAATCCC+CGG 0.518621 7.3:+7855216 None:intergenic
CAACGTGCTCTACAACAATT+GGG 0.519313 7.3:-7852893 MS.gene26487:CDS
CTTTCAGGCAATCCTCTTTG+GGG 0.520504 7.3:+7852845 None:intergenic
AAATAAGAGTTTGGGTGAAG+AGG 0.522513 7.3:-7852978 MS.gene26487:CDS
GATGGATCAATAATTGGTGG+TGG 0.523887 7.3:-7855057 MS.gene26487:CDS
AATGTACGTGGAAGAAATGA+AGG 0.525935 7.3:-7852300 MS.gene26487:CDS
CGTGGATTTGGTGTTGTTGG+TGG 0.528203 7.3:+7855457 None:intergenic
GAATCATCAGGAGTTGGTAG+TGG 0.530198 7.3:-7855084 MS.gene26487:CDS
AGGTGGCGCGTGAGGTGAGA+AGG 0.530811 7.3:+7855515 None:intergenic
GGAAGGAAGCCATGCAAAGA+AGG 0.533172 7.3:+7855417 None:intergenic
TTCGTTGTAACACCAGAAGC+CGG 0.536997 7.3:+7855255 None:intergenic
CCAATGGCAACGTACTATCA+TGG 0.542137 7.3:-7855720 MS.gene26487:CDS
ACATTATTACTTGAAAACCT+TGG 0.542336 7.3:+7851792 None:intergenic
GGATTTGGACAATACCCAAT+TGG 0.542874 7.3:-7851849 MS.gene26487:CDS
GGAGTTGGTAGTGGAGGAGA+TGG 0.547177 7.3:-7855075 MS.gene26487:CDS
AAAAGTGTACTTACGGGTGG+AGG 0.547866 7.3:+7852783 None:intergenic
ACACTTGTTCTCATGAATCC+AGG 0.550346 7.3:-7855645 MS.gene26487:CDS
TCCTCGTTCGAACAAGCCGC+CGG 0.551758 7.3:-7853100 MS.gene26487:CDS
ACCCAATTGGTGATATTGGT+AGG 0.552228 7.3:-7851836 MS.gene26487:CDS
GAATGATCCAGCATAACGCT+TGG 0.554984 7.3:-7852871 MS.gene26487:CDS
TCCAACACTCAACAATTCGT+TGG 0.555631 7.3:-7855492 MS.gene26487:CDS
ACCTCTGAAACAGAACCTAA+AGG 0.555839 7.3:-7852188 MS.gene26487:CDS
TCTTAGTCTCTCTTCACAGC+CGG 0.560177 7.3:-7855313 MS.gene26487:CDS
CATTGATTGTACTGCATGTG+TGG 0.560839 7.3:+7855396 None:intergenic
TTGAGATTGTTTGTAGTGCA+AGG 0.562020 7.3:+7853050 None:intergenic
CCGCCGGAATCGGTTCAGCT+AGG 0.562168 7.3:-7853084 MS.gene26487:CDS
ATTGGAGAATCATCAGGAGT+TGG 0.562542 7.3:-7855090 MS.gene26487:CDS
TTGGGAAAGAAGAGTGGTGG+TGG 0.562954 7.3:-7855129 MS.gene26487:CDS
GAAAACATAGTTACCGGCAG+CGG 0.567137 7.3:+7855566 None:intergenic
TCATCAGGAGTTGGTAGTGG+AGG 0.567311 7.3:-7855081 MS.gene26487:CDS
GTTACAACGAATAATAACAA+TGG 0.571166 7.3:-7855243 MS.gene26487:CDS
GCCAACGAATTGTTGAGTGT+TGG 0.571349 7.3:+7855491 None:intergenic
ATGGATCAATAATTGGTGGT+GGG 0.575349 7.3:-7855056 MS.gene26487:CDS
ATGAAATACCTCATCAAGCA+TGG 0.576005 7.3:+7854954 None:intergenic
TGAGATTGTTTGTAGTGCAA+GGG 0.576129 7.3:+7853051 None:intergenic
GCACAATGAGGCAAATAATG+AGG 0.576266 7.3:-7851952 MS.gene26487:CDS
TTTCAGCTGCTGTAGAGTTG+AGG 0.579177 7.3:+7855544 None:intergenic
CCAAACCAAAACATTCAACT+AGG 0.579234 7.3:-7851717 MS.gene26487:CDS
GAAATCCAATCAAGTGGTGG+CGG 0.581239 7.3:-7855687 MS.gene26487:CDS
CATTGATGTTAAGCACAATG+AGG 0.585091 7.3:-7851964 MS.gene26487:CDS
GTTGGTTGAAGGTGGAGCAA+AGG 0.585799 7.3:-7853159 MS.gene26487:intron
GATGAGAGACAAAATAGAGA+TGG 0.586332 7.3:-7851909 MS.gene26487:CDS
TTACCGGCAGCGGCATGAGA+AGG 0.586375 7.3:+7855576 None:intergenic
TCAACATGCAAAACCCAAAG+AGG 0.590340 7.3:-7851623 MS.gene26487:CDS
AACAAGTGTTTGAAGTCCGT+CGG 0.592444 7.3:+7855659 None:intergenic
TTGGATCATCAGAACTAGAA+GGG 0.594241 7.3:-7852049 MS.gene26487:CDS
AGTCAGGCTTTGGAAGCCAA+TGG 0.594390 7.3:-7852330 MS.gene26487:CDS
GAGTGGTGGTGGAATGAGCA+AGG 0.594607 7.3:-7855118 MS.gene26487:CDS
GCTAATTACCATGCTTGATG+AGG 0.595737 7.3:-7854962 MS.gene26487:intron
GTACAACGTCATGGTGCGCG+TGG 0.595803 7.3:+7855439 None:intergenic
GACAGTCCTTGTTGAGCGCG+TGG 0.597975 7.3:+7855336 None:intergenic
GATTGTACTGCATGTGTGGA+AGG 0.599960 7.3:+7855400 None:intergenic
CCAACAAGTGGTGATGATTG+TGG 0.604006 7.3:+7852104 None:intergenic
AAATGAACTAAATGGATCTG+AGG 0.605958 7.3:-7852276 MS.gene26487:CDS
TGGATCAATAATTGGTGGTG+GGG 0.613381 7.3:-7855055 MS.gene26487:CDS
GATACTTTCATATTGAGGAG+AGG 0.614077 7.3:+7851644 None:intergenic
AATTCTGAAATCCAATCAAG+TGG 0.614202 7.3:-7855693 MS.gene26487:CDS
AGATTCGTTTCTATGTCTGG+TGG 0.614647 7.3:-7855288 MS.gene26487:CDS
GAACACAATTGACCCAAACA+CGG 0.622706 7.3:-7855373 MS.gene26487:CDS
AATTGTTGAGTGTTGGAAGG+TGG 0.623899 7.3:+7855498 None:intergenic
GCAAAGAAGGTACAACGTCA+TGG 0.625334 7.3:+7855430 None:intergenic
GATACACCACGCGCTCAACA+AGG 0.625868 7.3:-7855342 MS.gene26487:CDS
CAGGCTTTGGAAGCCAATGG+TGG 0.629052 7.3:-7852327 MS.gene26487:CDS
GAGGTTGTGAATGTGAATAG+TGG 0.635951 7.3:-7855159 MS.gene26487:CDS
ACGAATTGTTGAGTGTTGGA+AGG 0.639184 7.3:+7855495 None:intergenic
GTAACACCAGAAGCCGGAGA+CGG 0.643060 7.3:+7855261 None:intergenic
GTGTTGGAAGGTGGCGCGTG+AGG 0.647584 7.3:+7855507 None:intergenic
ATAATAACAATGGGAATCCG+GGG 0.647699 7.3:-7855233 MS.gene26487:CDS
CCACAACCTCCATTTGATGG+TGG 0.650106 7.3:+7853125 None:intergenic
TCCGGCGGCTTGTTCGAACG+AGG 0.652183 7.3:+7853099 None:intergenic
ACATGCTTGCAAAACAAACA+GGG 0.653038 7.3:-7852489 MS.gene26487:CDS
ACTCAGAACAATTCACACCA+AGG 0.656664 7.3:-7851809 MS.gene26487:CDS
TCTGAAATCCAATCAAGTGG+TGG 0.660822 7.3:-7855690 MS.gene26487:CDS
GTTGAATTGGGAAAGAAGAG+TGG 0.679581 7.3:-7855135 MS.gene26487:CDS
GGAGATGGATCAATAATTGG+TGG 0.682848 7.3:-7855060 MS.gene26487:CDS
AACGCTTGGAGACCCCAAAG+AGG 0.685460 7.3:-7852857 MS.gene26487:CDS
GAACTAGAAGGGATACCACA+AGG 0.698540 7.3:-7852038 MS.gene26487:CDS
GAATTGGGAAAGAAGAGTGG+TGG 0.708823 7.3:-7855132 MS.gene26487:CDS
ACAGTACCACCATCAAATGG+AGG 0.710282 7.3:-7853131 MS.gene26487:CDS
CACAATTGACCCAAACACGG+CGG 0.712861 7.3:-7855370 MS.gene26487:CDS
CCTAGCTGAACCGATTCCGG+CGG 0.726597 7.3:+7853084 None:intergenic
ATGGCAACGTACTATCATGG+TGG 0.734896 7.3:-7855717 MS.gene26487:CDS
AATGGTGGAAGAAATGTACG+TGG 0.752334 7.3:-7852312 MS.gene26487:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATTAATTAAATTTTTAT+AGG - chr7.3:7852622-7852641 MS.gene26487:intron 0.0%
!! AAAATGTAATTATAAAAATG+AGG + chr7.3:7854059-7854078 None:intergenic 10.0%
!!! AAAAGTTTAGTATAATTTTT+TGG - chr7.3:7852534-7852553 MS.gene26487:intron 10.0%
!!! ACTTTTATAATGAATTAAAA+TGG + chr7.3:7852560-7852579 None:intergenic 10.0%
!!! TAATTACATTTTGAAATTAA+CGG - chr7.3:7854067-7854086 MS.gene26487:intron 10.0%
!!! TTTAACAATTTTTTTTTAAC+TGG - chr7.3:7852879-7852898 MS.gene26487:CDS 10.0%
!! TGTGATAAAATATTAATGTA+AGG + chr7.3:7853062-7853081 None:intergenic 15.0%
!! TGTTTATGATATATACTATT+TGG - chr7.3:7853441-7853460 MS.gene26487:intron 15.0%
!!! AATACAATCTTTTAAAGTAA+AGG - chr7.3:7853732-7853751 MS.gene26487:intron 15.0%
!!! AGTTTTATTGAAATGATTTA+TGG + chr7.3:7853950-7853969 None:intergenic 15.0%
!!! GTAATCAATCAATATAATTT+TGG - chr7.3:7854853-7854872 MS.gene26487:intron 15.0%
!! ACTAAAATGAATTTACTTGT+TGG - chr7.3:7854127-7854146 MS.gene26487:intron 20.0%
!! ATAGCAATAAATGACATAAA+TGG - chr7.3:7853708-7853727 MS.gene26487:intron 20.0%
!! ATATATCATAAACACCAAAT+AGG + chr7.3:7853435-7853454 None:intergenic 20.0%
!! ATTTGAATATGCCAAAAATA+AGG + chr7.3:7854891-7854910 None:intergenic 20.0%
!! CATCAAGGTTAAATTATAAA+TGG + chr7.3:7853156-7853175 None:intergenic 20.0%
!! TAACATCAATGAAACTATTA+GGG + chr7.3:7855331-7855350 None:intergenic 20.0%
!! TTAACATCAATGAAACTATT+AGG + chr7.3:7855332-7855351 None:intergenic 20.0%
!! TTACAACGAATAATAACAAT+GGG - chr7.3:7852062-7852081 MS.gene26487:CDS 20.0%
!! TTTCAATAAAACTAATTGCA+TGG - chr7.3:7853957-7853976 MS.gene26487:intron 20.0%
!!! AAATTAGAAAAGTGTACTTA+CGG + chr7.3:7854531-7854550 None:intergenic 20.0%
!!! AATAGTGAATTTTCATTAGA+TGG + chr7.3:7854026-7854045 None:intergenic 20.0%
!!! ACAATTTCTTTCCTTATTTT+TGG - chr7.3:7854877-7854896 MS.gene26487:intron 20.0%
!!! GAGTCATTTAGTAAATTTTT+TGG - chr7.3:7853484-7853503 MS.gene26487:intron 20.0%
!!! TAATATTTTATCACAGTCAA+TGG - chr7.3:7853067-7853086 MS.gene26487:CDS 20.0%
! AAAAACTACTCTTGTACTTA+AGG - chr7.3:7852947-7852966 MS.gene26487:CDS 25.0%
! AAAGCTACAAATAAGAGTTT+GGG - chr7.3:7854318-7854337 MS.gene26487:intron 25.0%
! ACATTATTACTTGAAAACCT+TGG + chr7.3:7855515-7855534 None:intergenic 25.0%
! ACTTATAACTCAACATGATT+TGG - chr7.3:7853006-7853025 MS.gene26487:CDS 25.0%
! ACTTATTGATACCAAATCTA+AGG - chr7.3:7853373-7853392 MS.gene26487:intron 25.0%
! ATGAAGGAAAATGAACTAAA+TGG - chr7.3:7855020-7855039 MS.gene26487:CDS 25.0%
! ATGTTGATACTTTCATATTG+AGG + chr7.3:7855668-7855687 None:intergenic 25.0%
! GTTACAACGAATAATAACAA+TGG - chr7.3:7852061-7852080 MS.gene26487:CDS 25.0%
! TAAAGCTACAAATAAGAGTT+TGG - chr7.3:7854317-7854336 MS.gene26487:intron 25.0%
! TAATCAATATCACATTCTTC+CGG + chr7.3:7853517-7853536 None:intergenic 25.0%
! TTTATAGAACCAAACTCATT+TGG + chr7.3:7855635-7855654 None:intergenic 25.0%
!! AATTAGAAAAGTGTACTTAC+GGG + chr7.3:7854530-7854549 None:intergenic 25.0%
!! TCTGAGTTCAAAGTATTTAA+GGG - chr7.3:7852102-7852121 MS.gene26487:CDS 25.0%
!! TTCTGAGTTCAAAGTATTTA+AGG - chr7.3:7852101-7852120 MS.gene26487:CDS 25.0%
!!! AATTTTGTTTGAATTGCAAC+AGG - chr7.3:7854926-7854945 MS.gene26487:intron 25.0%
!!! ATTAGGAATAGTTATTTCTC+TGG - chr7.3:7853313-7853332 MS.gene26487:intron 25.0%
!!! GTTGAGTTTTTTCTTTAGAA+AGG + chr7.3:7853037-7853056 None:intergenic 25.0%
!!! TAAATTTTTTGGTGTTAGAC+CGG - chr7.3:7853495-7853514 MS.gene26487:intron 25.0%
!!! TTTAACTTTTTATCTCTACG+TGG - chr7.3:7852691-7852710 MS.gene26487:intron 25.0%
AAACAATCTCAAAGCAGTTT+CGG - chr7.3:7854265-7854284 MS.gene26487:intron 30.0%
AAATGAACTAAATGGATCTG+AGG - chr7.3:7855028-7855047 MS.gene26487:CDS 30.0%
AAGACTAATATACCCAACAA+TGG + chr7.3:7853284-7853303 None:intergenic 30.0%
AATAATAACAATGGGAATCC+GGG - chr7.3:7852070-7852089 MS.gene26487:CDS 30.0%
AATAATGTTTCACTCACTCT+TGG - chr7.3:7855527-7855546 MS.gene26487:CDS 30.0%
AATGATAGAAAAACTGTGAG+TGG + chr7.3:7852821-7852840 None:intergenic 30.0%
AATTGCAACAGGTTTCAAAT+TGG - chr7.3:7854937-7854956 MS.gene26487:intron 30.0%
ATAAGTGAACCAAATGAGTT+TGG - chr7.3:7855623-7855642 MS.gene26487:CDS 30.0%
ATCAAGAAGGTAGTCTAAAT+GGG + chr7.3:7853181-7853200 None:intergenic 30.0%
ATTTATACATCTTGAGCACT+TGG + chr7.3:7854691-7854710 None:intergenic 30.0%
CAGAAATTATTGGAGTTTCT+TGG + chr7.3:7855172-7855191 None:intergenic 30.0%
CATATACTGGTATTATTGCT+AGG - chr7.3:7853124-7853143 MS.gene26487:CDS 30.0%
CCCTATTTGTATTAATCACA+CGG - chr7.3:7853660-7853679 MS.gene26487:intron 30.0%
CCGTGTGATTAATACAAATA+GGG + chr7.3:7853663-7853682 None:intergenic 30.0%
CCTATTTGTATTAATCACAC+GGG - chr7.3:7853661-7853680 MS.gene26487:intron 30.0%
CTATCATTCGAGTATTTAAG+TGG - chr7.3:7852833-7852852 MS.gene26487:CDS 30.0%
GAATAATAACAATGGGAATC+CGG - chr7.3:7852069-7852088 MS.gene26487:CDS 30.0%
GAGGAACTATCAATGAAATT+TGG - chr7.3:7855371-7855390 MS.gene26487:CDS 30.0%
GGAAATGTTAGAAACAATTC+AGG - chr7.3:7855221-7855240 MS.gene26487:CDS 30.0%
GGTCTAGAAACAGAAATTAT+TGG + chr7.3:7855182-7855201 None:intergenic 30.0%
TACTCTTGTACTTAAGGAAA+CGG - chr7.3:7852953-7852972 MS.gene26487:CDS 30.0%
TATCAAGAAGGTAGTCTAAA+TGG + chr7.3:7853182-7853201 None:intergenic 30.0%
TCAGAATATTGTATATAGCC+TGG + chr7.3:7851680-7851699 None:intergenic 30.0%
TGTTTGAAAGATGCAATAAC+AGG - chr7.3:7854288-7854307 MS.gene26487:intron 30.0%
TTTCTAACATTTCCAACAAG+TGG + chr7.3:7855215-7855234 None:intergenic 30.0%
! ACTCTAAAGAAAGGTTTGTT+AGG - chr7.3:7853244-7853263 MS.gene26487:intron 30.0%
! AGAGATGGTTACTCTTTTAT+GGG - chr7.3:7855410-7855429 MS.gene26487:CDS 30.0%
! CTTAAGTTACACCTTTTCAA+AGG + chr7.3:7853817-7853836 None:intergenic 30.0%
! TAGAGATGGTTACTCTTTTA+TGG - chr7.3:7855409-7855428 MS.gene26487:CDS 30.0%
! TCTTCACTTTCATGTGATTT+TGG - chr7.3:7852379-7852398 MS.gene26487:intron 30.0%
! TGAATTTACTTGTTGGTTGA+AGG - chr7.3:7854134-7854153 MS.gene26487:intron 30.0%
! TTCTTCCTAGTTGAATGTTT+TGG + chr7.3:7855595-7855614 None:intergenic 30.0%
! TTTAGAGTATCTCTAGCTAA+TGG + chr7.3:7853232-7853251 None:intergenic 30.0%
!! AATTCTGAAATCCAATCAAG+TGG - chr7.3:7851611-7851630 MS.gene26487:CDS 30.0%
!! ATTTGTTTTCAGCTATCCAA+AGG - chr7.3:7854780-7854799 MS.gene26487:intron 30.0%
!! CTCTAAAGAAAGGTTTGTTA+GGG - chr7.3:7853245-7853264 MS.gene26487:intron 30.0%
!! TAACTCAACATGATTTGGTT+TGG - chr7.3:7853011-7853030 MS.gene26487:CDS 30.0%
!! TTAGTCTTAGGTTTCTGATT+AGG - chr7.3:7853296-7853315 MS.gene26487:intron 30.0%
!! TTGTTGGGTATATTAGTCTT+AGG - chr7.3:7853284-7853303 MS.gene26487:intron 30.0%
!!! CAAGAGTAGTTTTTTTTCCA+AGG + chr7.3:7852941-7852960 None:intergenic 30.0%
!!! GAGAATTGTTTTTGCTAAAG+TGG - chr7.3:7852713-7852732 MS.gene26487:intron 30.0%
!!! TTTTTTCCAAGGTGTTGAAT+TGG + chr7.3:7852930-7852949 None:intergenic 30.0%
AAATAAGAGTTTGGGTGAAG+AGG - chr7.3:7854326-7854345 MS.gene26487:intron 35.0%
AACCTACCAATATCACCAAT+TGG + chr7.3:7855473-7855492 None:intergenic 35.0%
AAGGAAGTCCTAAAAAACCA+AGG - chr7.3:7855285-7855304 MS.gene26487:CDS 35.0%
AATATACCCAACAATGGAGA+TGG + chr7.3:7853278-7853297 None:intergenic 35.0%
AATGTACGTGGAAGAAATGA+AGG - chr7.3:7855004-7855023 MS.gene26487:CDS 35.0%
AATGTGCACAAACCAAATTG+AGG - chr7.3:7853545-7853564 MS.gene26487:intron 35.0%
AATTCAGGATTCAGCTTCAT+TGG - chr7.3:7855236-7855255 MS.gene26487:CDS 35.0%
ACATGCTTGCAAAACAAACA+GGG - chr7.3:7854815-7854834 MS.gene26487:intron 35.0%
ACCTACCAATATCACCAATT+GGG + chr7.3:7855472-7855491 None:intergenic 35.0%
ACTCTTGTACTTAAGGAAAC+GGG - chr7.3:7852954-7852973 MS.gene26487:CDS 35.0%
AGAACAGAAACAGATCTTTC+AGG + chr7.3:7854477-7854496 None:intergenic 35.0%
ATAATAACAATGGGAATCCG+GGG - chr7.3:7852071-7852090 MS.gene26487:CDS 35.0%
ATATACTATTTGGACGTGCA+TGG - chr7.3:7853451-7853470 MS.gene26487:intron 35.0%
ATGAAATACCTCATCAAGCA+TGG + chr7.3:7852353-7852372 None:intergenic 35.0%
ATTGGATCATCAGAACTAGA+AGG - chr7.3:7855254-7855273 MS.gene26487:CDS 35.0%
CACTTCAAAGTTATGAAGCA+CGG - chr7.3:7854556-7854575 MS.gene26487:intron 35.0%
CATTGATGTTAAGCACAATG+AGG - chr7.3:7855340-7855359 MS.gene26487:CDS 35.0%
CCAAACCAAAACATTCAACT+AGG - chr7.3:7855587-7855606 MS.gene26487:CDS 35.0%
CCCGTGTGATTAATACAAAT+AGG + chr7.3:7853664-7853683 None:intergenic 35.0%
CGTGGACTTTATAAATTGCA+AGG - chr7.3:7853096-7853115 MS.gene26487:CDS 35.0%
GAGGTAAAATTGAAGGTTCA+AGG - chr7.3:7854358-7854377 MS.gene26487:intron 35.0%
GATACTTTCATATTGAGGAG+AGG + chr7.3:7855663-7855682 None:intergenic 35.0%
GATGAGAGACAAAATAGAGA+TGG - chr7.3:7855395-7855414 MS.gene26487:CDS 35.0%
GCTCAAGATGTATAAATGCT+CGG - chr7.3:7854694-7854713 MS.gene26487:intron 35.0%
GTGAATATTGGAGAATCATC+AGG - chr7.3:7852208-7852227 MS.gene26487:CDS 35.0%
GTTGAGGAAAACATAGTTAC+CGG + chr7.3:7851747-7851766 None:intergenic 35.0%
TAATGGCAGAGGTGATTAAA+TGG + chr7.3:7853215-7853234 None:intergenic 35.0%
TACTAGAGAGAAGAGAAAGT+TGG + chr7.3:7853409-7853428 None:intergenic 35.0%
TACTGGTATTATTGCTAGGT+AGG - chr7.3:7853128-7853147 MS.gene26487:CDS 35.0%
TAGGGTTATGCATAAGTTCA+TGG + chr7.3:7855313-7855332 None:intergenic 35.0%
TAGTCTAAATGGGTACATCA+AGG + chr7.3:7853171-7853190 None:intergenic 35.0%
TGAGATTGTTTGTAGTGCAA+GGG + chr7.3:7854256-7854275 None:intergenic 35.0%
TGAGCTAGCTCCAAATTAAT+GGG + chr7.3:7853342-7853361 None:intergenic 35.0%
TGTGTGGAATTGTAACCTTT+AGG + chr7.3:7855134-7855153 None:intergenic 35.0%
TTGAGATTGTTTGTAGTGCA+AGG + chr7.3:7854257-7854276 None:intergenic 35.0%
TTGCAAGGAATAGCATATAC+TGG - chr7.3:7853111-7853130 MS.gene26487:CDS 35.0%
TTGGATCATCAGAACTAGAA+GGG - chr7.3:7855255-7855274 MS.gene26487:CDS 35.0%
! ATACCAAATCTAAGGTCTAG+AGG - chr7.3:7853381-7853400 MS.gene26487:intron 35.0%
! ATCCACCAATGAAGTTTGTT+CGG + chr7.3:7855439-7855458 None:intergenic 35.0%
! ATGGATCAATAATTGGTGGT+GGG - chr7.3:7852248-7852267 MS.gene26487:CDS 35.0%
! ATTTACTTGTTGGTTGAAGG+TGG - chr7.3:7854137-7854156 MS.gene26487:intron 35.0%
! CAATACCCAATTGGTGATAT+TGG - chr7.3:7855464-7855483 MS.gene26487:CDS 35.0%
! CTTACTCTTGTCCTTTGAAA+AGG - chr7.3:7853803-7853822 MS.gene26487:intron 35.0%
! CTTTTCAAAGGACAAGAGTA+AGG + chr7.3:7853805-7853824 None:intergenic 35.0%
! GCTAGAGATACTCTAAAGAA+AGG - chr7.3:7853235-7853254 MS.gene26487:intron 35.0%
! GTGAATAGTGGTGTTGAATT+GGG - chr7.3:7852157-7852176 MS.gene26487:CDS 35.0%
! TGTGAATAGTGGTGTTGAAT+TGG - chr7.3:7852156-7852175 MS.gene26487:CDS 35.0%
!! ACAAACTTCATTGGTGGATT+TGG - chr7.3:7855440-7855459 MS.gene26487:CDS 35.0%
!! CTCGGAGTCTTTAAAATCTT+CGG - chr7.3:7854712-7854731 MS.gene26487:intron 35.0%
!! CTTGGTCTTGATTCAATACA+AGG - chr7.3:7855545-7855564 MS.gene26487:CDS 35.0%
!! TATTGGAGTTTCTTGGCTTT+TGG + chr7.3:7855165-7855184 None:intergenic 35.0%
!! TGCTTTGGAGGTAAAATTGA+AGG - chr7.3:7854351-7854370 MS.gene26487:intron 35.0%
!!! CCTAGTTGAATGTTTTGGTT+TGG + chr7.3:7855590-7855609 None:intergenic 35.0%
!!! TCATGGTTCCTTGGTTTTTT+AGG + chr7.3:7855296-7855315 None:intergenic 35.0%
AAACCACAACCTCCATTTGA+TGG + chr7.3:7854185-7854204 None:intergenic 40.0%
AACCGAACAAACTTCATTGG+TGG - chr7.3:7855434-7855453 MS.gene26487:CDS 40.0%
ACAACGTGCTCTACAACAAT+TGG - chr7.3:7854410-7854429 MS.gene26487:intron 40.0%
ACACTTGTTCTCATGAATCC+AGG - chr7.3:7851659-7851678 MS.gene26487:CDS 40.0%
ACGTACATTTCTTCCACCAT+TGG + chr7.3:7854993-7855012 None:intergenic 40.0%
ACTCAGAACAATTCACACCA+AGG - chr7.3:7855495-7855514 MS.gene26487:CDS 40.0%
AGATTCGTTTCTATGTCTGG+TGG - chr7.3:7852016-7852035 MS.gene26487:CDS 40.0%
AGGTGATTAAATGGCAAGCA+CGG + chr7.3:7853206-7853225 None:intergenic 40.0%
ATCTTTCAGGCAATCCTCTT+TGG + chr7.3:7854464-7854483 None:intergenic 40.0%
ATGCTTTCTGAGCCTCAATT+TGG + chr7.3:7853560-7853579 None:intergenic 40.0%
ATGTGCTTGTCTGAATCCTT+TGG + chr7.3:7854799-7854818 None:intergenic 40.0%
ATTGGAGAATCATCAGGAGT+TGG - chr7.3:7852214-7852233 MS.gene26487:CDS 40.0%
CAAAACAAACAGGGCTTACT+AGG - chr7.3:7854824-7854843 MS.gene26487:intron 40.0%
CAACGTGCTCTACAACAATT+GGG - chr7.3:7854411-7854430 MS.gene26487:intron 40.0%
CACACATGCAGTACAATCAA+TGG - chr7.3:7851909-7851928 MS.gene26487:CDS 40.0%
CACATGCTTGCAAAACAAAC+AGG - chr7.3:7854814-7854833 MS.gene26487:intron 40.0%
CTCTTGTACTTAAGGAAACG+GGG - chr7.3:7852955-7852974 MS.gene26487:CDS 40.0%
GAAACGGGGTTATGATAATC+TGG - chr7.3:7852969-7852988 MS.gene26487:CDS 40.0%
GAACACAATTGACCCAAACA+CGG - chr7.3:7851931-7851950 MS.gene26487:CDS 40.0%
GACATAGAAACGAATCTTGC+CGG + chr7.3:7852013-7852032 None:intergenic 40.0%
GAGCTAGCTCCAAATTAATG+GGG + chr7.3:7853341-7853360 None:intergenic 40.0%
GAGGTTGTGAATGTGAATAG+TGG - chr7.3:7852145-7852164 MS.gene26487:CDS 40.0%
GATAGAAAAACTGTGAGTGG+TGG + chr7.3:7852818-7852837 None:intergenic 40.0%
GATGGATCAATAATTGGTGG+TGG - chr7.3:7852247-7852266 MS.gene26487:CDS 40.0%
GCAAGATTCGTTTCTATGTC+TGG - chr7.3:7852013-7852032 MS.gene26487:CDS 40.0%
GCACAATGAGGCAAATAATG+AGG - chr7.3:7855352-7855371 MS.gene26487:CDS 40.0%
GCTAATTACCATGCTTGATG+AGG - chr7.3:7852342-7852361 MS.gene26487:CDS 40.0%
GGAAACCGAACAAACTTCAT+TGG - chr7.3:7855431-7855450 MS.gene26487:CDS 40.0%
GGAATGAGCAAGGTGAATAT+TGG - chr7.3:7852196-7852215 MS.gene26487:CDS 40.0%
GGAGATGGATCAATAATTGG+TGG - chr7.3:7852244-7852263 MS.gene26487:CDS 40.0%
GGAGGAGATGGATCAATAAT+TGG - chr7.3:7852241-7852260 MS.gene26487:CDS 40.0%
GGATTTGGACAATACCCAAT+TGG - chr7.3:7855455-7855474 MS.gene26487:CDS 40.0%
GGCTTAGAGTCAACAATAGT+GGG - chr7.3:7853769-7853788 MS.gene26487:intron 40.0%
GGTTTATAAATGCTCGAGTC+AGG - chr7.3:7854958-7854977 MS.gene26487:intron 40.0%
GTAAAGGTCGTCAAACATAG+TGG - chr7.3:7853748-7853767 MS.gene26487:intron 40.0%
GTGAGCTAGCTCCAAATTAA+TGG + chr7.3:7853343-7853362 None:intergenic 40.0%
GTTGAATTGGGAAAGAAGAG+TGG - chr7.3:7852169-7852188 MS.gene26487:CDS 40.0%
TCAACATGCAAAACCCAAAG+AGG - chr7.3:7855681-7855700 MS.gene26487:CDS 40.0%
TCCAACACTCAACAATTCGT+TGG - chr7.3:7851812-7851831 MS.gene26487:CDS 40.0%
TCTCTCTAGTAGAGCCTATT+TGG - chr7.3:7853418-7853437 MS.gene26487:intron 40.0%
TCTCTGGTACCCCATTAATT+TGG - chr7.3:7853329-7853348 MS.gene26487:intron 40.0%
TCTTTCAGGCAATCCTCTTT+GGG + chr7.3:7854463-7854482 None:intergenic 40.0%
TGCATAAGTTCATGGTTCCT+TGG + chr7.3:7855305-7855324 None:intergenic 40.0%
TGGCTTAGAGTCAACAATAG+TGG - chr7.3:7853768-7853787 MS.gene26487:intron 40.0%
! AACAAGTGTTTGAAGTCCGT+CGG + chr7.3:7851648-7851667 None:intergenic 40.0%
! AATGGTGGAAGAAATGTACG+TGG - chr7.3:7854992-7855011 MS.gene26487:CDS 40.0%
! ACCCAATTGGTGATATTGGT+AGG - chr7.3:7855468-7855487 MS.gene26487:CDS 40.0%
! ACCTTTAGGTTCTGTTTCAG+AGG + chr7.3:7855120-7855139 None:intergenic 40.0%
! CATTGATTGTACTGCATGTG+TGG + chr7.3:7851911-7851930 None:intergenic 40.0%
! TAGAAAAGTGTACTTACGGG+TGG + chr7.3:7854527-7854546 None:intergenic 40.0%
! TCTGAAATCCAATCAAGTGG+TGG - chr7.3:7851614-7851633 MS.gene26487:CDS 40.0%
! TTAGAGTCAACAATAGTGGG+TGG - chr7.3:7853772-7853791 MS.gene26487:intron 40.0%
!! AATTGTTGAGTGTTGGAAGG+TGG + chr7.3:7851809-7851828 None:intergenic 40.0%
!! ACCTCTGAAACAGAACCTAA+AGG - chr7.3:7855116-7855135 MS.gene26487:CDS 40.0%
!! ACGAATTGTTGAGTGTTGGA+AGG + chr7.3:7851812-7851831 None:intergenic 40.0%
!! AGCACATGAGCTTTTAGAAG+AGG - chr7.3:7852126-7852145 MS.gene26487:CDS 40.0%
!! GCTTTTGGAAATGTCTTGTG+TGG + chr7.3:7855150-7855169 None:intergenic 40.0%
!! TGGATCAATAATTGGTGGTG+GGG - chr7.3:7852249-7852268 MS.gene26487:CDS 40.0%
!! TTCCAAGGTGTTGAATTGGA+GGG + chr7.3:7852926-7852945 None:intergenic 40.0%
!! TTTCCAAGGTGTTGAATTGG+AGG + chr7.3:7852927-7852946 None:intergenic 40.0%
!!! GGTTTTTTAGGACTTCCTTG+TGG + chr7.3:7855284-7855303 None:intergenic 40.0%
AACTGTGCAGCAAACCTCTT+TGG + chr7.3:7855698-7855717 None:intergenic 45.0%
ACACATGCCATCTCCATTGT+TGG - chr7.3:7853268-7853287 MS.gene26487:intron 45.0%
ACAGTACCACCATCAAATGG+AGG - chr7.3:7854173-7854192 MS.gene26487:intron 45.0%
ACTGTGCAGCAAACCTCTTT+GGG + chr7.3:7855697-7855716 None:intergenic 45.0%
ATGGCAACGTACTATCATGG+TGG - chr7.3:7851587-7851606 MS.gene26487:CDS 45.0%
CACATGCCATCTCCATTGTT+GGG - chr7.3:7853269-7853288 MS.gene26487:intron 45.0%
CAGACAGTACCACCATCAAA+TGG - chr7.3:7854170-7854189 MS.gene26487:intron 45.0%
CCACAATCATCACCACTTGT+TGG - chr7.3:7855200-7855219 MS.gene26487:CDS 45.0%
CTTTCAGGCAATCCTCTTTG+GGG + chr7.3:7854462-7854481 None:intergenic 45.0%
GAAAACATAGTTACCGGCAG+CGG + chr7.3:7851741-7851760 None:intergenic 45.0%
GAAATCCAATCAAGTGGTGG+CGG - chr7.3:7851617-7851636 MS.gene26487:CDS 45.0%
GAACTAGAAGGGATACCACA+AGG - chr7.3:7855266-7855285 MS.gene26487:CDS 45.0%
GAACTCAGAATCTGAATCCC+CGG + chr7.3:7852091-7852110 None:intergenic 45.0%
GAATGATCCAGCATAACGCT+TGG - chr7.3:7854433-7854452 MS.gene26487:intron 45.0%
GAATTGGGAAAGAAGAGTGG+TGG - chr7.3:7852172-7852191 MS.gene26487:CDS 45.0%
GACGTTGTACCTTCTTTGCA+TGG - chr7.3:7851878-7851897 MS.gene26487:CDS 45.0%
GATTGTACTGCATGTGTGGA+AGG + chr7.3:7851907-7851926 None:intergenic 45.0%
GCCAACGAATTGTTGAGTGT+TGG + chr7.3:7851816-7851835 None:intergenic 45.0%
GGTGATTAAATGGCAAGCAC+GGG + chr7.3:7853205-7853224 None:intergenic 45.0%
GTATCTCTAGCTAATGGCAG+AGG + chr7.3:7853226-7853245 None:intergenic 45.0%
GTGCCTCTAGACCTTAGATT+TGG + chr7.3:7853387-7853406 None:intergenic 45.0%
TAAATGCTCGAGTCAGGCTT+TGG - chr7.3:7854964-7854983 MS.gene26487:CDS 45.0%
TCTTAGTCTCTCTTCACAGC+CGG - chr7.3:7851991-7852010 MS.gene26487:CDS 45.0%
TTCGTTGTAACACCAGAAGC+CGG + chr7.3:7852052-7852071 None:intergenic 45.0%
TTGGGTGAAGAGGATTGCTT+TGG - chr7.3:7854336-7854355 MS.gene26487:intron 45.0%
TTTCAGCTGCTGTAGAGTTG+AGG + chr7.3:7851763-7851782 None:intergenic 45.0%
! AAAAGTGTACTTACGGGTGG+AGG + chr7.3:7854524-7854543 None:intergenic 45.0%
! CCAACAAGTGGTGATGATTG+TGG + chr7.3:7855203-7855222 None:intergenic 45.0%
! GCAAAGAAGGTACAACGTCA+TGG + chr7.3:7851877-7851896 None:intergenic 45.0%
!! ATCAATAATTGGTGGTGGGG+AGG - chr7.3:7852252-7852271 MS.gene26487:CDS 45.0%
!! CTGTTTCTGTTCTTCGTGCT+TGG - chr7.3:7854484-7854503 MS.gene26487:intron 45.0%
!! GAATCATCAGGAGTTGGTAG+TGG - chr7.3:7852220-7852239 MS.gene26487:CDS 45.0%
!! GGTGAGAGCTTTTTCTTGAG+AGG + chr7.3:7855099-7855118 None:intergenic 45.0%
!! TCAATAATTGGTGGTGGGGA+GGG - chr7.3:7852253-7852272 MS.gene26487:CDS 45.0%
!! TCCAAGGTGTTGAATTGGAG+GGG + chr7.3:7852925-7852944 None:intergenic 45.0%
!! TGGTGTTGTTGGTGGTTAAG+AGG + chr7.3:7851842-7851861 None:intergenic 45.0%
!!! TTTTTATAGATTAATTTTTT+TGG - chr7.3:7852438-7852457 MS.gene26487:intron 5.0%
AACAGGGCTTACTAGGAGTC+AGG - chr7.3:7854831-7854850 MS.gene26487:intron 50.0%
ACCCCTCCAATTCAACACCT+TGG - chr7.3:7852921-7852940 MS.gene26487:CDS 50.0%
CACAATTGACCCAAACACGG+CGG - chr7.3:7851934-7851953 MS.gene26487:CDS 50.0%
CACAGTCAATGGTACGTACG+TGG - chr7.3:7853078-7853097 MS.gene26487:CDS 50.0%
CCACAACCTCCATTTGATGG+TGG + chr7.3:7854182-7854201 None:intergenic 50.0%
CCACCATCAAATGGAGGTTG+TGG - chr7.3:7854179-7854198 MS.gene26487:intron 50.0%
GGAAGGAAGCCATGCAAAGA+AGG + chr7.3:7851890-7851909 None:intergenic 50.0%
GGTGAAGAGGATTGCTTTGG+AGG - chr7.3:7854339-7854358 MS.gene26487:intron 50.0%
GTTGGTTGAAGGTGGAGCAA+AGG - chr7.3:7854145-7854164 MS.gene26487:intron 50.0%
TTGGGAAAGAAGAGTGGTGG+TGG - chr7.3:7852175-7852194 MS.gene26487:CDS 50.0%
! TGTCCTAGCTGAACCGATTC+CGG + chr7.3:7854226-7854245 None:intergenic 50.0%
!! AGTCAGGCTTTGGAAGCCAA+TGG - chr7.3:7854974-7854993 MS.gene26487:CDS 50.0%
!! CGTGGATTTGGTGTTGTTGG+TGG + chr7.3:7851850-7851869 None:intergenic 50.0%
!! TCATCAGGAGTTGGTAGTGG+AGG - chr7.3:7852223-7852242 MS.gene26487:CDS 50.0%
AACGCTTGGAGACCCCAAAG+AGG - chr7.3:7854447-7854466 MS.gene26487:intron 55.0%
GATACACCACGCGCTCAACA+AGG - chr7.3:7851962-7851981 MS.gene26487:CDS 55.0%
GGCAAGCACGGGTATCAAGA+AGG + chr7.3:7853194-7853213 None:intergenic 55.0%
GTAACACCAGAAGCCGGAGA+CGG + chr7.3:7852046-7852065 None:intergenic 55.0%
TTCGAACAAGCCGCCGGAAT+CGG - chr7.3:7854210-7854229 MS.gene26487:intron 55.0%
!! ATCCAATCAAGTGGTGGCGG+CGG - chr7.3:7851620-7851639 MS.gene26487:CDS 55.0%
!! CAGGCTTTGGAAGCCAATGG+TGG - chr7.3:7854977-7854996 MS.gene26487:CDS 55.0%
!! GAGTGGTGGTGGAATGAGCA+AGG - chr7.3:7852186-7852205 MS.gene26487:CDS 55.0%
!! GCGCGTGGATTTGGTGTTGT+TGG + chr7.3:7851853-7851872 None:intergenic 55.0%
!! GGAGTTGGTAGTGGAGGAGA+TGG - chr7.3:7852229-7852248 MS.gene26487:CDS 55.0%
CAACCTTCTCATGCCGCTGC+CGG - chr7.3:7851725-7851744 MS.gene26487:CDS 60.0%
CGTCATGGTGCGCGTGGATT+TGG + chr7.3:7851862-7851881 None:intergenic 60.0%
GACAGTCCTTGTTGAGCGCG+TGG + chr7.3:7851971-7851990 None:intergenic 60.0%
GGGGTCTCCAAGCGTTATGC+TGG + chr7.3:7854443-7854462 None:intergenic 60.0%
GTACAACGTCATGGTGCGCG+TGG + chr7.3:7851868-7851887 None:intergenic 60.0%
TATCACGCGCCGCCGTGTTT+GGG + chr7.3:7851946-7851965 None:intergenic 60.0%
TCCTCGTTCGAACAAGCCGC+CGG - chr7.3:7854204-7854223 MS.gene26487:intron 60.0%
TTACCGGCAGCGGCATGAGA+AGG + chr7.3:7851731-7851750 None:intergenic 60.0%
! CCTAGCTGAACCGATTCCGG+CGG + chr7.3:7854223-7854242 None:intergenic 60.0%
!! ATTGGTGGTGGGGAGGGAAG+TGG - chr7.3:7852259-7852278 MS.gene26487:CDS 60.0%
AGGTGGCGCGTGAGGTGAGA+AGG + chr7.3:7851792-7851811 None:intergenic 65.0%
GTATCACGCGCCGCCGTGTT+TGG + chr7.3:7851947-7851966 None:intergenic 65.0%
GTCTGGTGGTTCGCCGTCTC+CGG - chr7.3:7852030-7852049 MS.gene26487:CDS 65.0%
GTGTTGGAAGGTGGCGCGTG+AGG + chr7.3:7851800-7851819 None:intergenic 65.0%
! CCGCCGGAATCGGTTCAGCT+AGG - chr7.3:7854220-7854239 MS.gene26487:intron 65.0%
! TCCGGCGGCTTGTTCGAACG+AGG + chr7.3:7854208-7854227 None:intergenic 65.0%
CGCCGCCGCCACCACTTGAT+TGG + chr7.3:7851625-7851644 None:intergenic 70.0%
GGTTCGCCGTCTCCGGCTTC+TGG - chr7.3:7852037-7852056 MS.gene26487:CDS 70.0%
!!! AGTGGTGGCGGCGGCGCCGA+CGG - chr7.3:7851629-7851648 MS.gene26487:CDS 80.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 7851587 7855739 7851587 ID=MS.gene26487
chr7.3 mRNA 7851587 7855739 7851587 ID=MS.gene26487.t1;Parent=MS.gene26487
chr7.3 exon 7854963 7855739 7854963 ID=MS.gene26487.t1.exon1;Parent=MS.gene26487.t1
chr7.3 CDS 7854963 7855739 7854963 ID=cds.MS.gene26487.t1;Parent=MS.gene26487.t1
chr7.3 exon 7852797 7853170 7852797 ID=MS.gene26487.t1.exon2;Parent=MS.gene26487.t1
chr7.3 CDS 7852797 7853170 7852797 ID=cds.MS.gene26487.t1;Parent=MS.gene26487.t1
chr7.3 exon 7852474 7852534 7852474 ID=MS.gene26487.t1.exon3;Parent=MS.gene26487.t1
chr7.3 CDS 7852474 7852534 7852474 ID=cds.MS.gene26487.t1;Parent=MS.gene26487.t1
chr7.3 exon 7851587 7852378 7851587 ID=MS.gene26487.t1.exon4;Parent=MS.gene26487.t1
chr7.3 CDS 7851587 7852378 7851587 ID=cds.MS.gene26487.t1;Parent=MS.gene26487.t1
Gene Sequence

>MS.gene26487

ATGGCAACGTACTATCATGGTGGTAATTCTGAAATCCAATCAAGTGGTGGCGGCGGCGCCGACGGACTTCAAACACTTGTTCTCATGAATCCAGGCTATATACAATATTCTGATGCTACACAGCAACAACAAGCTCAACAACCTTCTCATGCCGCTGCCGGTAACTATGTTTTCCTCAACTCTACAGCAGCTGAAAACAACTCCTTCTCACCTCACGCGCCACCTTCCAACACTCAACAATTCGTTGGCATACCTCTTAACCACCAACAACACCAAATCCACGCGCACCATGACGTTGTACCTTCTTTGCATGGCTTCCTTCCACACATGCAGTACAATCAATGGAACACAATTGACCCAAACACGGCGGCGCGTGATACACCACGCGCTCAACAAGGACTGTCTCTTAGTCTCTCTTCACAGCCGGCAAGATTCGTTTCTATGTCTGGTGGTTCGCCGTCTCCGGCTTCTGGTGTTACAACGAATAATAACAATGGGAATCCGGGGATTCAGATTCTGAGTTCAAAGTATTTAAGGGCAGCACATGAGCTTTTAGAAGAGGTTGTGAATGTGAATAGTGGTGTTGAATTGGGAAAGAAGAGTGGTGGTGGAATGAGCAAGGTGAATATTGGAGAATCATCAGGAGTTGGTAGTGGAGGAGATGGATCAATAATTGGTGGTGGGGAGGGAAGTGGAAAACGTAGCTCTGAGCTATCAACAGCTGAAAGACAAGAAATACAGATGAAGAAAGCTAAGCTAATTACCATGCTTGATGAGGTATTTCATTTCATTTCTTCACTTTCATGTGATTTTGGCTATTTGCAATAATTAATTAATTCAAACTATGATATTTTTTATAGATTAATTTTTTTGGTGAATGTATATAATTTTATTTTATAGATTATAATTATGTATTTTATAAGTTTAGTATAATTCTTGTTCAAAAAAAAAGTTTAGTATAATTTTTTGGCCATTTTAATTCATTATAAAAGTTAGAGACTAAAAATATATGTTTTTTGTAAAAGATAATGAATAAAAATTAATTAAATTTTTATAGGATTTAAAATTAGAAAATTGACATTTTGTAGTTTTGCTAAAATTATATTTAACTTTTTATCTCTACGTGGAGAATTGTTTTTGCTAAAGTGGAGCAACTGAGCAAAGATTGTTACAAGTATGATGTATACTGCTTTCATTGATTTATCATTGCAATGCAATGAATGAAAATCCACCACTCACAGTTTTTCTATCATTCGAGTATTTAAGTGGTTTCACTTGTACAAGTTATTTATTTTAACAATTTTTTTTTAACTGGTGTATTCAATATAACTACTACCCCTCCAATTCAACACCTTGGAAAAAAAACTACTCTTGTACTTAAGGAAACGGGGTTATGATAATCTGGAATTTCTAACAATAACTTATAACTCAACATGATTTGGTTTGGCCTTTCTAAAGAAAAAACTCAACATCCTTACATTAATATTTTATCACAGTCAATGGTACGTACGTGGACTTTATAAATTGCAAGGAATAGCATATACTGGTATTATTGCTAGGTAGGCTCCATTTATAATTTAACCTTGATGTACCCATTTAGACTACCTTCTTGATACCCGTGCTTGCCATTTAATCACCTCTGCCATTAGCTAGAGATACTCTAAAGAAAGGTTTGTTAGGGACACATGCCATCTCCATTGTTGGGTATATTAGTCTTAGGTTTCTGATTAGGAATAGTTATTTCTCTGGTACCCCATTAATTTGGAGCTAGCTCACTTTGATGCGTACTTATTGATACCAAATCTAAGGTCTAGAGGCACCAACTTTCTCTTCTCTCTAGTAGAGCCTATTTGGTGTTTATGATATATACTATTTGGACGTGCATGGAGTTATTTGTGAGTCATTTAGTAAATTTTTTGGTGTTAGACCGGAAGAATGTGATATTGATTAGATATTTAAATGTGCACAAACCAAATTGAGGCTCAGAAAGCATAGAGTGAATATACTCTCAAATCTCAAAAGATAAAACTCAATTTTTAGCTTGAAACTTAGATATACATAGATAGATATTGTCCCTATTTGTATTAATCACACGGGTCAATCTACAGTAGAAATAATACTATAGCAATAAATGACATAAATGGAAATACAATCTTTTAAAGTAAAGGTCGTCAAACATAGTGGCTTAGAGTCAACAATAGTGGGTGGTGCAAATCCTTACTCTTGTCCTTTGAAAAGGTGTAACTTAAGTAATTGTTGATATTAGTGAAATTTTAAATAGACTTAATAAAAACTTTTGATTCTATTAGTATTAGTAATTTTGATTGTGTCAATTTAGTTGATGAAAATAGAGACGAATACCATAAATCATTTCAATAAAACTAATTGCATGGATTTAAATGAAATGAATTGTAAATATAAATTGACTTTACAAAGCCATCTAATGAAAATTCACTATTTTGTCACATGCCTCATTTTTATAATTACATTTTGAAATTAACGGTATGATATAAAAATAAAAGATTCTTGTTAAATGTCTGACTAAAATGAATTTACTTGTTGGTTGAAGGTGGAGCAAAGGTACAGACAGTACCACCATCAAATGGAGGTTGTGGTTTCCTCGTTCGAACAAGCCGCCGGAATCGGTTCAGCTAGGACATACACTGCCCTTGCACTACAAACAATCTCAAAGCAGTTTCGGTGTTTGAAAGATGCAATAACAGGACAAATTAAAGCTACAAATAAGAGTTTGGGTGAAGAGGATTGCTTTGGAGGTAAAATTGAAGGTTCAAGGCTCAAATATGTTGATCATCAACTACGTCAACAACGTGCTCTACAACAATTGGGAATGATCCAGCATAACGCTTGGAGACCCCAAAGAGGATTGCCTGAAAGATCTGTTTCTGTTCTTCGTGCTTGGCTCTTTGAACATTTCCTCCACCCGTAAGTACACTTTTCTAATTTTTACTCACTTCAAAGTTATGAAGCACGGACACTAATTACACGTAGTGTTAGAGAAAATAACATAATTCAATGTAATCACAAGTGTTGATGTCGTCGTGTTTGTGTCGAACACAACACTTGTTGAACATCGTGACATGCCAAGTGCTCAAGATGTATAAATGCTCGGAGTCTTTAAAATCTTCGGTATATAGTCTTTAAACTCTTGTCAATTTTATGCTGATATCACTGAATTTGTTTTCAGCTATCCAAAGGATTCAGACAAGCACATGCTTGCAAAACAAACAGGGCTTACTAGGAGTCAGGTAATCAATCAATATAATTTTGGAACAATTTCTTTCCTTATTTTTGGCATATTCAAATTCAAAGTGTTAATAAAATTTTGTTTGAATTGCAACAGGTTTCAAATTGGTTTATAAATGCTCGAGTCAGGCTTTGGAAGCCAATGGTGGAAGAAATGTACGTGGAAGAAATGAAGGAAAATGAACTAAATGGATCTGAGGATAAACAAAGTAAGAGCAATGAAGATTCTTCAATGAAAATAACATCCTCTCAAGAAAAAGCTCTCACCTCTGAAACAGAACCTAAAGGTTACAATTCCACACAAGACATTTCCAAAAGCCAAGAAACTCCAATAATTTCTGTTTCTAGACCACAATCATCACCACTTGTTGGAAATGTTAGAAACAATTCAGGATTCAGCTTCATTGGATCATCAGAACTAGAAGGGATACCACAAGGAAGTCCTAAAAAACCAAGGAACCATGAACTTATGCATAACCCTAATAGTTTCATTGATGTTAAGCACAATGAGGCAAATAATGAGGAACTATCAATGAAATTTGGTGATGAGAGACAAAATAGAGATGGTTACTCTTTTATGGGAAACCGAACAAACTTCATTGGTGGATTTGGACAATACCCAATTGGTGATATTGGTAGGTTTGACTCAGAACAATTCACACCAAGGTTTTCAAGTAATAATGTTTCACTCACTCTTGGTCTTGATTCAATACAAGGAAATCATCAAACATTTCTACCAAACCAAAACATTCAACTAGGAAGAAGCATTGATATAAGTGAACCAAATGAGTTTGGTTCTATAAACACTTCCTCTCCTCAATATGAAAGTATCAACATGCAAAACCCAAAGAGGTTTGCTGCACAGTTGTTACCAGATTTTGTGTCCTAA
Protein sequence

>MS.gene26487.t1

MATYYHGGNSEIQSSGGGGADGLQTLVLMNPGYIQYSDATQQQQAQQPSHAAAGNYVFLNSTAAENNSFSPHAPPSNTQQFVGIPLNHQQHQIHAHHDVVPSLHGFLPHMQYNQWNTIDPNTAARDTPRAQQGLSLSLSSQPARFVSMSGGSPSPASGVTTNNNNGNPGIQILSSKYLRAAHELLEEVVNVNSGVELGKKSGGGMSKVNIGESSGVGSGGDGSIIGGGEGSGKRSSELSTAERQEIQMKKAKLITMLDEVEQRYRQYHHQMEVVVSSFEQAAGIGSARTYTALALQTISKQFRCLKDAITGQIKATNKSLGEEDCFGGKIEGSRLKYVDHQLRQQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYVEEMKENELNGSEDKQSKSNEDSSMKITSSQEKALTSETEPKGYNSTQDISKSQETPIISVSRPQSSPLVGNVRNNSGFSFIGSSELEGIPQGSPKKPRNHELMHNPNSFIDVKHNEANNEELSMKFGDERQNRDGYSFMGNRTNFIGGFGQYPIGDIGRFDSEQFTPRFSSNNVSLTLGLDSIQGNHQTFLPNQNIQLGRSIDISEPNEFGSINTSSPQYESINMQNPKRFAAQLLPDFVS