AlfalfaGEDB | MS.gene26976

M. sativa cultivar XinJiangDaYe / MS.gene26976

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF13041.9 PF17177.7

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26976.t1	KEH40160.1	95.2	63	3	0	281	343	281	343	3.90E-24	122.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26976.t1	Q940Z1	49.0	51	26	0	281	331	245	295	1.7e-07	58.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26976.t1	A0A072VPV1	95.2	63	3	0	281	343	281	343	2.8e-24	122.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049255	MS.gene26976	0.801936	7.12E-49	-1.69E-46
MS.gene049441	MS.gene26976	0.811932	5.47E-51	-1.69E-46
MS.gene049824	MS.gene26976	0.85298	3.23E-61	-1.69E-46
MS.gene049825	MS.gene26976	0.845329	4.35E-59	-1.69E-46
MS.gene049873	MS.gene26976	0.845526	3.85E-59	-1.69E-46
MS.gene050303	MS.gene26976	0.802789	4.75E-49	-1.69E-46
MS.gene050427	MS.gene26976	0.816916	4.32E-52	-1.69E-46
MS.gene050916	MS.gene26976	0.823907	1.08E-53	-1.69E-46
MS.gene051700	MS.gene26976	0.825457	4.64E-54	-1.69E-46
MS.gene051791	MS.gene26976	0.827977	1.16E-54	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26976.t1	MTR_1g022360	97.085	343	10	0	1	343	1	343	0.0	690
MS.gene26976.t1	MTR_7g075010	41.700	247	144	0	3	249	172	418	1.30e-59	197
MS.gene26976.t1	MTR_1g068960	26.129	310	225	2	18	325	243	550	4.03e-28	115
MS.gene26976.t1	MTR_1g068960	20.376	319	248	3	11	327	98	412	1.49e-14	75.1
MS.gene26976.t1	MTR_1g068960	30.968	155	107	0	15	169	415	569	1.20e-13	72.4
MS.gene26976.t1	MTR_5g031740	24.850	334	247	2	2	333	145	476	7.13e-28	115
MS.gene26976.t1	MTR_5g031740	21.875	320	248	2	8	326	221	539	3.26e-19	89.4
MS.gene26976.t1	MTR_5g031740	21.467	368	261	5	3	343	426	792	3.34e-15	77.4
MS.gene26976.t1	MTR_5g031740	20.402	348	251	3	3	324	496	843	2.03e-13	71.6
MS.gene26976.t1	MTR_5g031740	23.154	298	201	5	3	297	321	593	2.97e-13	71.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26976.t1	AT1G19520	54.079	331	151	1	2	331	374	704	9.79e-127	380
MS.gene26976.t1	AT1G01970	40.891	247	146	0	3	249	156	402	1.33e-54	184
MS.gene26976.t1	AT1G05670	24.138	319	242	0	8	326	277	595	1.69e-30	122
MS.gene26976.t1	AT1G05670	23.529	238	182	0	11	248	455	692	9.66e-20	90.9
MS.gene26976.t1	AT1G05670	19.512	328	229	1	11	338	385	677	4.01e-13	70.9
MS.gene26976.t1	AT1G05670	24.138	319	242	0	8	326	277	595	1.69e-30	122
MS.gene26976.t1	AT1G05670	23.529	238	182	0	11	248	455	692	9.66e-20	90.9
MS.gene26976.t1	AT1G05670	19.512	328	229	1	11	338	385	677	4.01e-13	70.9
MS.gene26976.t1	AT1G05670	24.138	319	242	0	8	326	277	595	1.69e-30	122
MS.gene26976.t1	AT1G05670	23.529	238	182	0	11	248	455	692	9.66e-20	90.9

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Find 85 sgRNAs with CRISPR-Local

Find 91 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTTATTGGACAAGGCAT+TGG	0.435548	1.3:-2620427	MS.gene26976:CDS
AAGAATGCATGGGATTATGG+AGG	0.678136	1.3:-2620091	MS.gene26976:CDS
AAGGACTAAAATGGAGAAAA+AGG	0.306250	1.3:-2620223	MS.gene26976:CDS
AATGCTGGTGAACCTACAAA+GGG	0.617131	1.3:-2620747	MS.gene26976:CDS
AATTGAAGATTACCTTATCT+AGG	0.478742	1.3:+2620526	None:intergenic
ACAAAGAATGCATGGGATTA+TGG	0.354641	1.3:-2620094	MS.gene26976:CDS
ACAGAATAAGTCACAATCCC+AGG	0.545255	1.3:+2620369	None:intergenic
ACATTGGCTATCGAAGCATC+TGG	0.528199	1.3:+2620894	None:intergenic
ACCGCATTGATGATACTGAG+AGG	0.716042	1.3:-2620950	MS.gene26976:CDS
ACCTCATACTTAATGGTAAG+CGG	0.587468	1.3:+2620019	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATTTATTGGACAAGGCAT+TGG	-	chr1.3:2620616-2620635	MS.gene26976:CDS	30.0%
AAGGACTAAAATGGAGAAAA+AGG	-	chr1.3:2620820-2620839	MS.gene26976:CDS	30.0%
AGACTAACTTGAACCTTAAA+AGG	+	chr1.3:2620785-2620804	None:intergenic	30.0%
AGTAGTCAGATATATTTGCT+TGG	+	chr1.3:2620043-2620062	None:intergenic	30.0%
ATAATCCTCTCAAACTCATT+TGG	+	chr1.3:2620893-2620912	None:intergenic	30.0%
CAAATATATCTGACTACTCT+AGG	-	chr1.3:2620045-2620064	MS.gene26976:CDS	30.0%
CTTAATTTAGCCCTTAAATC+TGG	-	chr1.3:2621001-2621020	MS.gene26976:CDS	30.0%
GACATGTATATTTCCTTTGT+AGG	+	chr1.3:2620362-2620381	None:intergenic	30.0%
TATGTATGCAAGGACTAAAA+TGG	-	chr1.3:2620811-2620830	MS.gene26976:CDS	30.0%
TTGACCATATGGTAAAACTT+GGG	-	chr1.3:2620540-2620559	MS.gene26976:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	2620017	2621048	2620017	ID=MS.gene26976
chr1.3	mRNA	2620017	2621048	2620017	ID=MS.gene26976.t1;Parent=MS.gene26976
chr1.3	exon	2620017	2621048	2620017	ID=MS.gene26976.t1.exon1;Parent=MS.gene26976.t1
chr1.3	CDS	2620017	2621048	2620017	ID=cds.MS.gene26976.t1;Parent=MS.gene26976.t1

Gene Sequence

>MS.gene26976

ATGGTATTAACTGAAGATTCTTTCCAAGCAAATATATCTGACTACTCTAGGCTTATTGATATGTATGCTAAAGAGAACCGCATTGATGATACTGAGAGGATGCTTAAGAAGATGAATGAAAATGGTTTACAACCAGATGCTTCGATAGCCAATGTGATGGTCCACATGTACAGCAAGATAGGTAATCTTGAACGTGCAGAAGAAGCATTTAAAATCTTGAGTAGCCTGGGTTTCCAACCAGACACGAGAGTCTACAACTCAATGATCATGGCCTATATCAATGCTGGTGAACCTACAAAGGGTGAAACACTGATGAGGCAGATGGAGATGAGAGATATTAAGCCTACAAAGGAAATATACATGTCATTGCTCCGATATTATTCTCAACGTGGCGACATTGATCGTGCCTCACGAACTGCATCATCTTTGCAGTTTGCAGGACACCCGCAGACTAAGGAAACATGCACCCTGCTTATTGAAGCAGCAGCAGTTGCAGGTGACCTAGATAAGGTAATCTTCAATTTTGACCATATGGTAAAACTTGGGCATAAGCCTGATGATAGATGCACTGCTGCCATGATTCGCGCTTATGAGAAAACAAATTTATTGGACAAGGCATTGGATCTTCTTATGACGTTAGAGAAGGATGGGTTTGAGCCTGGGATTGTGACTTATTCTGTTCTTCTGGACTGGATGGCTAAAATGCAGCTTGTCGATGAGGCTGAACAAATTTTAAACAAAATTGCTCTACTGGGCGAGACTCCTCCTTTTAAGGTTCAAGTTAGTCTTTGTGATATGTATGCAAGGACTAAAATGGAGAAAAAGGCCCTTCAAACACTAGGCATTCTGATAGCTAGGAAGGAAGAATTACGACCAAATGAGTTTGAGAGGATTATATCTGGCCTTATCGGTGGTGGGTTTTTGCGGGATGCACAAAGAATGCATGGGATTATGGAGGCACAGGGTTTCAAACCATCTCAACAGCTTAATTTAGCCCTTAAATCTGGCCGCTTACCATTAAGTATGAGGTAG

Protein sequence

>MS.gene26976.t1

MVLTEDSFQANISDYSRLIDMYAKENRIDDTERMLKKMNENGLQPDASIANVMVHMYSKIGNLERAEEAFKILSSLGFQPDTRVYNSMIMAYINAGEPTKGETLMRQMEMRDIKPTKEIYMSLLRYYSQRGDIDRASRTASSLQFAGHPQTKETCTLLIEAAAVAGDLDKVIFNFDHMVKLGHKPDDRCTAAMIRAYEKTNLLDKALDLLMTLEKDGFEPGIVTYSVLLDWMAKMQLVDEAEQILNKIALLGETPPFKVQVSLCDMYARTKMEKKALQTLGILIARKEELRPNEFERIISGLIGGGFLRDAQRMHGIMEAQGFKPSQQLNLALKSGRLPLSMR