Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27073.t1 | XP_003589483.1 | 100 | 142 | 0 | 0 | 1 | 142 | 1 | 142 | 1.60E-72 | 282 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27073.t1 | Q84WL9 | 94.4 | 142 | 8 | 0 | 1 | 142 | 1 | 142 | 2.2e-70 | 266.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27073.t1 | B7FMB2 | 100.0 | 142 | 0 | 0 | 1 | 142 | 1 | 142 | 1.1e-72 | 282.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049178 | MS.gene27073 | 0.8068 | 6.90E-50 | -1.69E-46 |
| MS.gene050114 | MS.gene27073 | 0.821002 | 5.09E-53 | -1.69E-46 |
| MS.gene050439 | MS.gene27073 | 0.835495 | 1.62E-56 | -1.69E-46 |
| MS.gene05188 | MS.gene27073 | 0.814912 | 1.21E-51 | -1.69E-46 |
| MS.gene051975 | MS.gene27073 | 0.813843 | 2.08E-51 | -1.69E-46 |
| MS.gene053786 | MS.gene27073 | 0.801571 | 8.46E-49 | -1.69E-46 |
| MS.gene055603 | MS.gene27073 | 0.854906 | 9.01E-62 | -1.69E-46 |
| MS.gene056638 | MS.gene27073 | 0.838421 | 2.90E-57 | -1.69E-46 |
| MS.gene056986 | MS.gene27073 | 0.837125 | 6.25E-57 | -1.69E-46 |
| MS.gene06011 | MS.gene27073 | 0.833531 | 5.05E-56 | -1.69E-46 |
| MS.gene060869 | MS.gene27073 | 0.807791 | 4.25E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene073113 | MS.gene27073 | PPI |
| MS.gene021005 | MS.gene27073 | PPI |
| MS.gene64514 | MS.gene27073 | PPI |
| MS.gene06157 | MS.gene27073 | PPI |
| MS.gene20143 | MS.gene27073 | PPI |
| MS.gene27073 | MS.gene06156 | PPI |
| MS.gene94633 | MS.gene27073 | PPI |
| MS.gene09847 | MS.gene27073 | PPI |
| MS.gene017498 | MS.gene27073 | PPI |
| MS.gene75781 | MS.gene27073 | PPI |
| MS.gene91504 | MS.gene27073 | PPI |
| MS.gene061903 | MS.gene27073 | PPI |
| MS.gene049041 | MS.gene27073 | PPI |
| MS.gene35343 | MS.gene27073 | PPI |
| MS.gene27073 | MS.gene015847 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27073.t1 | MTR_1g025190 | 100.000 | 142 | 0 | 0 | 1 | 142 | 1 | 142 | 9.54e-102 | 287 |
| MS.gene27073.t1 | MTR_5g098940 | 55.319 | 141 | 63 | 0 | 1 | 141 | 1 | 141 | 2.44e-54 | 168 |
| MS.gene27073.t1 | MTR_5g087820 | 51.773 | 141 | 68 | 0 | 1 | 141 | 25 | 165 | 4.33e-49 | 155 |
| MS.gene27073.t1 | MTR_7g100010 | 46.763 | 139 | 74 | 0 | 2 | 140 | 3 | 141 | 2.02e-38 | 127 |
| MS.gene27073.t1 | MTR_8g102180 | 46.763 | 139 | 74 | 0 | 2 | 140 | 3 | 141 | 2.02e-38 | 127 |
| MS.gene27073.t1 | MTR_8g077600 | 39.597 | 149 | 81 | 3 | 1 | 142 | 1 | 147 | 4.53e-30 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27073.t1 | AT1G47830 | 94.366 | 142 | 8 | 0 | 1 | 142 | 1 | 142 | 2.71e-96 | 273 |
| MS.gene27073.t1 | AT4G35410 | 54.610 | 141 | 64 | 0 | 1 | 141 | 1 | 141 | 1.39e-53 | 166 |
| MS.gene27073.t1 | AT2G17380 | 53.901 | 141 | 65 | 0 | 1 | 141 | 1 | 141 | 1.66e-53 | 166 |
| MS.gene27073.t1 | AT2G19790 | 46.763 | 139 | 74 | 0 | 2 | 140 | 3 | 141 | 1.16e-38 | 128 |
| MS.gene27073.t1 | AT4G35410 | 53.061 | 98 | 46 | 0 | 1 | 98 | 1 | 98 | 4.34e-33 | 112 |
| MS.gene27073.t1 | AT3G50860 | 38.776 | 147 | 85 | 1 | 1 | 142 | 1 | 147 | 9.89e-33 | 114 |
| MS.gene27073.t1 | AT3G50860 | 37.931 | 145 | 85 | 1 | 1 | 140 | 1 | 145 | 1.45e-31 | 110 |
Find 30 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAACGAAATTAGTGTATT+TGG | 0.082600 | 1.1:+635093 | None:intergenic |
| CCATTTGTTTGTTGAAATCT+TGG | 0.225064 | 1.1:-633840 | MS.gene27073:CDS |
| TTCAAGAGGAACATAGTATT+TGG | 0.241775 | 1.1:+635174 | None:intergenic |
| CAATGTCTGCGAACTTGATT+TGG | 0.278261 | 1.1:-633804 | MS.gene27073:CDS |
| TCAACGAAATTAGTGTATTT+GGG | 0.354296 | 1.1:+635094 | None:intergenic |
| GAATGAATTCATCAAGTATA+AGG | 0.361705 | 1.1:+632643 | None:intergenic |
| GTATTCGACCTTGTGTTTCT+CGG | 0.367660 | 1.1:+635147 | None:intergenic |
| AACATAGTATTTGGCTAAAC+GGG | 0.399817 | 1.1:+635183 | None:intergenic |
| CAGGCTATCATTGAAAGAAT+GGG | 0.419258 | 1.1:-632365 | MS.gene27073:CDS |
| GAACATAGTATTTGGCTAAA+CGG | 0.419670 | 1.1:+635182 | None:intergenic |
| GCAGGCTATCATTGAAAGAA+TGG | 0.433845 | 1.1:-632366 | MS.gene27073:intron |
| CCAAGATTTCAACAAACAAA+TGG | 0.450421 | 1.1:+633840 | None:intergenic |
| GTAATATACCGGAGATATGC+TGG | 0.461155 | 1.1:-633923 | MS.gene27073:CDS |
| CATTCTGTTGCAGAACAGAC+AGG | 0.470525 | 1.1:-635212 | MS.gene27073:CDS |
| CTTGATGAATTCATTCTAGC+GGG | 0.516282 | 1.1:-632636 | MS.gene27073:CDS |
| TGTTCTGCAACAGAATGAAT+CGG | 0.534099 | 1.1:+635218 | None:intergenic |
| AAAACAGTCCAGCATATCTC+CGG | 0.546650 | 1.1:+633915 | None:intergenic |
| TGTTTCTCGGAATCTTCAAG+AGG | 0.587461 | 1.1:+635160 | None:intergenic |
| ACTTGATGAATTCATTCTAG+CGG | 0.603094 | 1.1:-632637 | MS.gene27073:CDS |
| CAAATACACTAATTTCGTTG+AGG | 0.615858 | 1.1:-635092 | MS.gene27073:intron |
| GTACACACAAGGTAATATAC+CGG | 0.616996 | 1.1:-633934 | MS.gene27073:CDS |
| GAAACACAAGGTCGAATACG+AGG | 0.625603 | 1.1:-635143 | MS.gene27073:CDS |
| ACTGCAAGAAACAAGCAAGA+AGG | 0.630829 | 1.1:-632610 | MS.gene27073:intron |
| TGGGATCTCTATTTACGACA+AGG | 0.631018 | 1.1:+635113 | None:intergenic |
| GTTGCAGTTTCGTACACACA+AGG | 0.632236 | 1.1:-633945 | MS.gene27073:intron |
| AGGCTATCATTGAAAGAATG+GGG | 0.635618 | 1.1:-632364 | MS.gene27073:CDS |
| ATTCTGTTGCAGAACAGACA+GGG | 0.638809 | 1.1:-635211 | MS.gene27073:CDS |
| TGACATCACTGATAATGAGT+TGG | 0.649266 | 1.1:-633879 | MS.gene27073:CDS |
| TGAAGATTCCGAGAAACACA+AGG | 0.650445 | 1.1:-635155 | MS.gene27073:CDS |
| GGCTATCATTGAAAGAATGG+GGG | 0.667109 | 1.1:-632363 | MS.gene27073:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTAAATATGCATTATTTA+TGG | + | chr1.1:632607-632626 | None:intergenic | 15.0% |
| !! | TTAAATAATAACCGTTTAAT+GGG | - | chr1.1:633682-633701 | MS.gene27073:intron | 15.0% |
| !! | TTTATGATACAAAATAATAG+TGG | - | chr1.1:634109-634128 | MS.gene27073:intron | 15.0% |
| !!! | AAATAATAGTGGAATATAAA+AGG | - | chr1.1:634120-634139 | MS.gene27073:intron | 15.0% |
| !!! | AATAATAGTGGAATATAAAA+GGG | - | chr1.1:634121-634140 | MS.gene27073:intron | 15.0% |
| !!! | TTTTTTAGAACAAAAACATA+TGG | + | chr1.1:634347-634366 | None:intergenic | 15.0% |
| !! | ATTTATAGAAAACTATGTCT+CGG | - | chr1.1:634067-634086 | MS.gene27073:intron | 20.0% |
| !! | GTTAAATAATAACCGTTTAA+TGG | - | chr1.1:633681-633700 | MS.gene27073:intron | 20.0% |
| !! | TAATGAGTTCAATACAAATA+TGG | - | chr1.1:632657-632676 | MS.gene27073:intron | 20.0% |
| !!! | AAGGACATTTTTCATATATA+TGG | + | chr1.1:634546-634565 | None:intergenic | 20.0% |
| !!! | ATAAATTAATTTCCCCTTTT+TGG | - | chr1.1:632388-632407 | MS.gene27073:intron | 20.0% |
| !!! | TCACTTTTTTCATTTGTTTT+TGG | - | chr1.1:634750-634769 | MS.gene27073:intron | 20.0% |
| !!! | TGGTTTTTACACAATAATAA+GGG | + | chr1.1:633014-633033 | None:intergenic | 20.0% |
| !!! | TTGGTTTTTACACAATAATA+AGG | + | chr1.1:633015-633034 | None:intergenic | 20.0% |
| !!! | TTTAGTTTTATCTGATTTGA+AGG | - | chr1.1:634988-635007 | MS.gene27073:intron | 20.0% |
| ! | AAAAATTTGTACACACAACA+AGG | + | chr1.1:634601-634620 | None:intergenic | 25.0% |
| ! | AACAAATGTTACCCATTAAA+CGG | + | chr1.1:633696-633715 | None:intergenic | 25.0% |
| ! | ACCAAAATTTCATGATATCA+AGG | + | chr1.1:633079-633098 | None:intergenic | 25.0% |
| ! | CATGATTACTGAAAAACAAA+AGG | + | chr1.1:633919-633938 | None:intergenic | 25.0% |
| ! | GAATGAATTCATCAAGTATA+AGG | + | chr1.1:635018-635037 | None:intergenic | 25.0% |
| ! | GCAATTGCAAATTATTTACT+AGG | + | chr1.1:634511-634530 | None:intergenic | 25.0% |
| ! | GTATGTTAAATTAGACACAA+TGG | + | chr1.1:634832-634851 | None:intergenic | 25.0% |
| ! | GTTATCTATCTTTGTATTGT+TGG | - | chr1.1:633995-634014 | MS.gene27073:intron | 25.0% |
| ! | TATATGAAAAATGTCCTTAC+AGG | - | chr1.1:634548-634567 | MS.gene27073:intron | 25.0% |
| ! | TATTGTGTAAAAACCAAGTT+CGG | - | chr1.1:633018-633037 | MS.gene27073:intron | 25.0% |
| ! | TCAACGAAATTAGTGTATTT+GGG | + | chr1.1:632567-632586 | None:intergenic | 25.0% |
| !! | AAGAAATATTTTACCGAACT+TGG | + | chr1.1:633034-633053 | None:intergenic | 25.0% |
| !! | AGATTTTCAACCAATTAACT+AGG | + | chr1.1:633393-633412 | None:intergenic | 25.0% |
| !! | ATCTTGTTGTCAATAACTTT+AGG | - | chr1.1:633169-633188 | MS.gene27073:intron | 25.0% |
| !! | GGTTTTTACACAATAATAAG+GGG | + | chr1.1:633013-633032 | None:intergenic | 25.0% |
| !! | GTTTTTACACAATAATAAGG+GGG | + | chr1.1:633012-633031 | None:intergenic | 25.0% |
| !! | TTTCACTTGTGATAATGATA+TGG | + | chr1.1:632904-632923 | None:intergenic | 25.0% |
| !!! | AATAACTTTAGGATCTTTCT+AGG | - | chr1.1:633180-633199 | MS.gene27073:intron | 25.0% |
| !!! | AATTTTGGTTTACGATTCTA+TGG | - | chr1.1:633090-633109 | MS.gene27073:intron | 25.0% |
| !!! | TGTTTTTCAGTAATCATGTA+GGG | - | chr1.1:633921-633940 | MS.gene27073:CDS | 25.0% |
| !!! | TTCGTTTTTGCACAATAATA+AGG | + | chr1.1:632986-633005 | None:intergenic | 25.0% |
| !!! | TTGTTTTTCAGTAATCATGT+AGG | - | chr1.1:633920-633939 | MS.gene27073:CDS | 25.0% |
| AAATTACTGTTCACAGATGA+TGG | + | chr1.1:633554-633573 | None:intergenic | 30.0% | |
| AAATTAGTCCCTAACTTTGT+AGG | + | chr1.1:632837-632856 | None:intergenic | 30.0% | |
| AACATAGTATTTGGCTAAAC+GGG | + | chr1.1:632478-632497 | None:intergenic | 30.0% | |
| AAGTGAAAATGACTGTTTGA+AGG | - | chr1.1:632916-632935 | MS.gene27073:intron | 30.0% | |
| AATATAAAAGGGTAGATGGA+TGG | - | chr1.1:634132-634151 | MS.gene27073:intron | 30.0% | |
| AATTACTGTTCACAGATGAT+GGG | + | chr1.1:633553-633572 | None:intergenic | 30.0% | |
| AATTAGTCCCTAACTTTGTA+GGG | + | chr1.1:632836-632855 | None:intergenic | 30.0% | |
| ACAATTTATCCCACTAAATG+GGG | + | chr1.1:632726-632745 | None:intergenic | 30.0% | |
| ACTTGATGAATTCATTCTAG+CGG | - | chr1.1:635021-635040 | MS.gene27073:intron | 30.0% | |
| ATATAAAAGGGTAGATGGAT+GGG | - | chr1.1:634133-634152 | MS.gene27073:intron | 30.0% | |
| CAAATACACTAATTTCGTTG+AGG | - | chr1.1:632566-632585 | MS.gene27073:intron | 30.0% | |
| CAGATAAAACTAAATGAGCA+AGG | + | chr1.1:634982-635001 | None:intergenic | 30.0% | |
| CATAGGTACCTTATGATTTA+AGG | - | chr1.1:635133-635152 | MS.gene27073:CDS | 30.0% | |
| CCAAGATTTCAACAAACAAA+TGG | + | chr1.1:633821-633840 | None:intergenic | 30.0% | |
| CTCAACGAAATTAGTGTATT+TGG | + | chr1.1:632568-632587 | None:intergenic | 30.0% | |
| GAACATAGTATTTGGCTAAA+CGG | + | chr1.1:632479-632498 | None:intergenic | 30.0% | |
| GAAGTTGGATCTAGTATTTA+CGG | + | chr1.1:634478-634497 | None:intergenic | 30.0% | |
| GACAATTTATCCCACTAAAT+GGG | + | chr1.1:632727-632746 | None:intergenic | 30.0% | |
| GCAAAAGTTGAAATACATGA+TGG | - | chr1.1:634225-634244 | MS.gene27073:intron | 30.0% | |
| GCAGAGTTATAAATTTCTCA+AGG | + | chr1.1:632882-632901 | None:intergenic | 30.0% | |
| GGTAATGCTATGATGATATT+GGG | - | chr1.1:634016-634035 | MS.gene27073:intron | 30.0% | |
| GTGTCTAATTTAACATACAG+CGG | - | chr1.1:634834-634853 | MS.gene27073:intron | 30.0% | |
| TACAAAGTTAGGGACTAATT+TGG | - | chr1.1:632836-632855 | MS.gene27073:intron | 30.0% | |
| TGACAAAATAACAAACCTTG+TGG | + | chr1.1:633890-633909 | None:intergenic | 30.0% | |
| TGCTTGGATATTCAAAACAT+TGG | - | chr1.1:633960-633979 | MS.gene27073:intron | 30.0% | |
| TGTGAACAGTAATTTATCTG+TGG | - | chr1.1:633559-633578 | MS.gene27073:intron | 30.0% | |
| TTCAAGAGGAACATAGTATT+TGG | + | chr1.1:632487-632506 | None:intergenic | 30.0% | |
| TTCATATATATGGCAGCAAA+TGG | + | chr1.1:634536-634555 | None:intergenic | 30.0% | |
| TTGAAATATTCATCGTCTCA+TGG | - | chr1.1:632795-632814 | MS.gene27073:intron | 30.0% | |
| TTTCGATCAAAGTGGAAAAT+GGG | + | chr1.1:634383-634402 | None:intergenic | 30.0% | |
| TTTCTTAGAGAGTTGCTTAA+AGG | - | chr1.1:633048-633067 | MS.gene27073:intron | 30.0% | |
| ! | AACACAAAACAGGTTAGTTA+AGG | + | chr1.1:635271-635290 | None:intergenic | 30.0% |
| ! | CCATTTGTTTGTTGAAATCT+TGG | - | chr1.1:633818-633837 | MS.gene27073:CDS | 30.0% |
| ! | GAAGCTGTAGTTCTATATAT+TGG | - | chr1.1:633639-633658 | MS.gene27073:intron | 30.0% |
| ! | GCCTTGATATCATGAAATTT+TGG | - | chr1.1:633075-633094 | MS.gene27073:intron | 30.0% |
| ! | TATAAGTATTGTGTGTGATG+TGG | + | chr1.1:633141-633160 | None:intergenic | 30.0% |
| ! | TGGTAATGCTATGATGATAT+TGG | - | chr1.1:634015-634034 | MS.gene27073:intron | 30.0% |
| ! | TTAATTTCCCCTTTTTGGAT+TGG | - | chr1.1:632393-632412 | MS.gene27073:intron | 30.0% |
| !! | GTTTTTCAGTAATCATGTAG+GGG | - | chr1.1:633922-633941 | MS.gene27073:CDS | 30.0% |
| !!! | GAAGAATCTGAGTGTTTTTT+TGG | - | chr1.1:634173-634192 | MS.gene27073:intron | 30.0% |
| !!! | TTTGGTTTTTAACTTCCACA+AGG | - | chr1.1:633872-633891 | MS.gene27073:CDS | 30.0% |
| AAACACGATCCAATCCAAAA+AGG | + | chr1.1:632405-632424 | None:intergenic | 35.0% | |
| AAAGTTAGGGACTAATTTGG+TGG | - | chr1.1:632839-632858 | MS.gene27073:intron | 35.0% | |
| AACACGATCCAATCCAAAAA+GGG | + | chr1.1:632404-632423 | None:intergenic | 35.0% | |
| AAGGTCTAAGAAGGCAAAAA+AGG | + | chr1.1:633264-633283 | None:intergenic | 35.0% | |
| AAGTGAGAATAAGGTTGCTT+TGG | + | chr1.1:634695-634714 | None:intergenic | 35.0% | |
| AATGAAGTTTGTGATTGCTG+AGG | - | chr1.1:634913-634932 | MS.gene27073:intron | 35.0% | |
| ACACTAATTTCGTTGAGGTA+TGG | - | chr1.1:632571-632590 | MS.gene27073:intron | 35.0% | |
| AGGCTATCATTGAAAGAATG+GGG | - | chr1.1:635294-635313 | MS.gene27073:intron | 35.0% | |
| ATAAAGGACATTCAAGGTCT+TGG | + | chr1.1:633305-633324 | None:intergenic | 35.0% | |
| ATGAAGTTTGTGATTGCTGA+GGG | - | chr1.1:634914-634933 | MS.gene27073:intron | 35.0% | |
| ATTTCATCCCAAAAGCTTCA+CGG | + | chr1.1:633418-633437 | None:intergenic | 35.0% | |
| CAATTAACTAGGACCTTTCA+AGG | + | chr1.1:633382-633401 | None:intergenic | 35.0% | |
| CAGCAATCACAAACTTCATT+TGG | + | chr1.1:634913-634932 | None:intergenic | 35.0% | |
| CAGGCTATCATTGAAAGAAT+GGG | - | chr1.1:635293-635312 | MS.gene27073:intron | 35.0% | |
| CAGTTAGGCCTTAAATCATA+AGG | + | chr1.1:635144-635163 | None:intergenic | 35.0% | |
| CGACAATTTATCCCACTAAA+TGG | + | chr1.1:632728-632747 | None:intergenic | 35.0% | |
| CTCGGAAATCGAGATAAATT+AGG | - | chr1.1:634085-634104 | MS.gene27073:intron | 35.0% | |
| CTTGAAAGGTCCTAGTTAAT+TGG | - | chr1.1:633380-633399 | MS.gene27073:intron | 35.0% | |
| CTTGATGAATTCATTCTAGC+GGG | - | chr1.1:635022-635041 | MS.gene27073:intron | 35.0% | |
| CTTTCGATCAAAGTGGAAAA+TGG | + | chr1.1:634384-634403 | None:intergenic | 35.0% | |
| GTACACACAAGGTAATATAC+CGG | - | chr1.1:633724-633743 | MS.gene27073:intron | 35.0% | |
| GTGGAATATAAAAGGGTAGA+TGG | - | chr1.1:634128-634147 | MS.gene27073:intron | 35.0% | |
| TAGACTCACTATTCAACTGT+AGG | - | chr1.1:634312-634331 | MS.gene27073:intron | 35.0% | |
| TCGATTTCCTTTGCTTCTTT+GGG | - | chr1.1:635164-635183 | MS.gene27073:CDS | 35.0% | |
| TGATGGGAAAATCAAACATG+AGG | + | chr1.1:633537-633556 | None:intergenic | 35.0% | |
| TGCTCAATTAGAAACTCAAC+AGG | + | chr1.1:634790-634809 | None:intergenic | 35.0% | |
| TGTTCTGCAACAGAATGAAT+CGG | + | chr1.1:632443-632462 | None:intergenic | 35.0% | |
| TTAGACCTTACTGTTGTCAT+TGG | - | chr1.1:633275-633294 | MS.gene27073:intron | 35.0% | |
| TTCGATCAAAGTGGAAAATG+GGG | + | chr1.1:634382-634401 | None:intergenic | 35.0% | |
| TTTGTTCTCTAACTCCTAGA+AGG | + | chr1.1:632761-632780 | None:intergenic | 35.0% | |
| ! | AAATCTATCCGTGAAGCTTT+TGG | - | chr1.1:633407-633426 | MS.gene27073:intron | 35.0% |
| ! | AATCTATCCGTGAAGCTTTT+GGG | - | chr1.1:633408-633427 | MS.gene27073:intron | 35.0% |
| ! | ACAGGTTAGTTAAGGAATTG+TGG | + | chr1.1:635263-635282 | None:intergenic | 35.0% |
| ! | CGGAATCAAATTTTCCTGTA+AGG | + | chr1.1:634565-634584 | None:intergenic | 35.0% |
| ! | GACATGTGATTGCTAGTTTA+AGG | - | chr1.1:635101-635120 | MS.gene27073:CDS | 35.0% |
| ! | TGACATCACTGATAATGAGT+TGG | - | chr1.1:633779-633798 | MS.gene27073:intron | 35.0% |
| !! | AAGGTTGCTTTGGATCTTTT+GGG | + | chr1.1:634685-634704 | None:intergenic | 35.0% |
| !! | ACTTTAGGATCTTTCTAGGT+TGG | - | chr1.1:633184-633203 | MS.gene27073:intron | 35.0% |
| !! | TAAGGTTGCTTTGGATCTTT+TGG | + | chr1.1:634686-634705 | None:intergenic | 35.0% |
| !!! | AGCATTCTGCTGTTTTAAAG+TGG | - | chr1.1:633614-633633 | MS.gene27073:intron | 35.0% |
| AAAACAGTCCAGCATATCTC+CGG | + | chr1.1:633746-633765 | None:intergenic | 40.0% | |
| AAATGTGCCCAAAGAAGCAA+AGG | + | chr1.1:635174-635193 | None:intergenic | 40.0% | |
| AACAAGGCTTGTGTTGAAGA+CGG | + | chr1.1:634585-634604 | None:intergenic | 40.0% | |
| ACACGATCCAATCCAAAAAG+GGG | + | chr1.1:632403-632422 | None:intergenic | 40.0% | |
| ACATGAGGAAGCAAAAGAGA+TGG | + | chr1.1:633522-633541 | None:intergenic | 40.0% | |
| ACTGCAAGAAACAAGCAAGA+AGG | - | chr1.1:635048-635067 | MS.gene27073:intron | 40.0% | |
| AGCAAAGGAAATCGACAGTT+AGG | + | chr1.1:635159-635178 | None:intergenic | 40.0% | |
| ATAGCCTGCAAACACAAAAC+AGG | + | chr1.1:635281-635300 | None:intergenic | 40.0% | |
| ATTCTGTTGCAGAACAGACA+GGG | - | chr1.1:632447-632466 | MS.gene27073:intron | 40.0% | |
| CAATGTCTGCGAACTTGATT+TGG | - | chr1.1:633854-633873 | MS.gene27073:CDS | 40.0% | |
| CATGAGGAAGCAAAAGAGAT+GGG | + | chr1.1:633521-633540 | None:intergenic | 40.0% | |
| CGTAGTGAACAGTAAGACTT+AGG | + | chr1.1:634875-634894 | None:intergenic | 40.0% | |
| CTAGGTCTTCTACAAGAAGT+TGG | + | chr1.1:634493-634512 | None:intergenic | 40.0% | |
| GACAACAGTAAGGTCTAAGA+AGG | + | chr1.1:633273-633292 | None:intergenic | 40.0% | |
| GATCTCCAATGACAACAGTA+AGG | + | chr1.1:633283-633302 | None:intergenic | 40.0% | |
| GATGCACGGTTACTAAACAA+CGG | + | chr1.1:633488-633507 | None:intergenic | 40.0% | |
| GCAGGCTATCATTGAAAGAA+TGG | - | chr1.1:635292-635311 | MS.gene27073:intron | 40.0% | |
| GGCTATCATTGAAAGAATGG+GGG | - | chr1.1:635295-635314 | MS.gene27073:intron | 40.0% | |
| GGGGTCAGAATTAGAATTAG+CGG | - | chr1.1:634263-634282 | MS.gene27073:intron | 40.0% | |
| GGGTCAGAATTAGAATTAGC+GGG | - | chr1.1:634264-634283 | MS.gene27073:intron | 40.0% | |
| GGTCAGAATTAGAATTAGCG+GGG | - | chr1.1:634265-634284 | MS.gene27073:intron | 40.0% | |
| GGTTTACGATTCTATGGCAA+TGG | - | chr1.1:633096-633115 | MS.gene27073:intron | 40.0% | |
| GTAATATACCGGAGATATGC+TGG | - | chr1.1:633735-633754 | MS.gene27073:intron | 40.0% | |
| GTATTCGACCTTGTGTTTCT+CGG | + | chr1.1:632514-632533 | None:intergenic | 40.0% | |
| GTGTTCTAATTGAGCATGCT+TGG | - | chr1.1:633944-633963 | MS.gene27073:intron | 40.0% | |
| TGAAGATTCCGAGAAACACA+AGG | - | chr1.1:632503-632522 | MS.gene27073:intron | 40.0% | |
| TGGGAGAAAAAACTGATGCA+CGG | + | chr1.1:633502-633521 | None:intergenic | 40.0% | |
| TGGGATCTCTATTTACGACA+AGG | + | chr1.1:632548-632567 | None:intergenic | 40.0% | |
| TGTTTCTCGGAATCTTCAAG+AGG | + | chr1.1:632501-632520 | None:intergenic | 40.0% | |
| TTCTCTGCTTACGACAATTG+CGG | - | chr1.1:635192-635211 | MS.gene27073:CDS | 40.0% | |
| ! | AGAGCTAAATCACGTTTTGC+TGG | - | chr1.1:633220-633239 | MS.gene27073:intron | 40.0% |
| ! | AGGGTATTTGATGAGGACAT+AGG | + | chr1.1:633350-633369 | None:intergenic | 40.0% |
| ! | CTAACCTGTTTTGTGTTTGC+AGG | - | chr1.1:635274-635293 | MS.gene27073:intron | 40.0% |
| ! | GACATAGGAAGCATAACCAA+GGG | + | chr1.1:633335-633354 | None:intergenic | 40.0% |
| ! | GGAAGCATAAAGGACATTCA+AGG | + | chr1.1:633311-633330 | None:intergenic | 40.0% |
| ! | GTCGATTTCCTTTGCTTCTT+TGG | - | chr1.1:635163-635182 | MS.gene27073:CDS | 40.0% |
| !! | AGGTTGCTTTGGATCTTTTG+GGG | + | chr1.1:634684-634703 | None:intergenic | 40.0% |
| ACTAAATGGGGTCAGCTACA+TGG | + | chr1.1:632714-632733 | None:intergenic | 45.0% | |
| ACTGCAGCGAAGTGAGAATA+AGG | + | chr1.1:634704-634723 | None:intergenic | 45.0% | |
| AGGACCTTTCAAGGAAAACG+CGG | + | chr1.1:633373-633392 | None:intergenic | 45.0% | |
| AGTTTGTGATTGCTGAGGGT+TGG | - | chr1.1:634918-634937 | MS.gene27073:intron | 45.0% | |
| ATGGCACAAAAAGAGCTGAG+GGG | - | chr1.1:634244-634263 | MS.gene27073:intron | 45.0% | |
| ATGTAGCTGACCCCATTTAG+TGG | - | chr1.1:632713-632732 | MS.gene27073:intron | 45.0% | |
| CAAAGTGGAAAATGGGGCAA+AGG | + | chr1.1:634376-634395 | None:intergenic | 45.0% | |
| CATTCTGTTGCAGAACAGAC+AGG | - | chr1.1:632446-632465 | MS.gene27073:intron | 45.0% | |
| GAAACACAAGGTCGAATACG+AGG | - | chr1.1:632515-632534 | MS.gene27073:intron | 45.0% | |
| GATGGCACAAAAAGAGCTGA+GGG | - | chr1.1:634243-634262 | MS.gene27073:intron | 45.0% | |
| GGATGGGTGGATATGGAATA+GGG | - | chr1.1:634149-634168 | MS.gene27073:intron | 45.0% | |
| GTCGTTGTTGTAGTCCTTCT+AGG | - | chr1.1:632744-632763 | MS.gene27073:intron | 45.0% | |
| GTTGCAGTTTCGTACACACA+AGG | - | chr1.1:633713-633732 | MS.gene27073:intron | 45.0% | |
| GTTTGTGATTGCTGAGGGTT+GGG | - | chr1.1:634919-634938 | MS.gene27073:intron | 45.0% | |
| TAAAAGGGTAGATGGATGGG+TGG | - | chr1.1:634136-634155 | MS.gene27073:intron | 45.0% | |
| TGATGGCACAAAAAGAGCTG+AGG | - | chr1.1:634242-634261 | MS.gene27073:intron | 45.0% | |
| TGGATGGGTGGATATGGAAT+AGG | - | chr1.1:634148-634167 | MS.gene27073:intron | 45.0% | |
| TGTAGCTGACCCCATTTAGT+GGG | - | chr1.1:632714-632733 | MS.gene27073:intron | 45.0% | |
| ! | AACCAAGGGAGGAAGCATAA+AGG | + | chr1.1:633321-633340 | None:intergenic | 45.0% |
| ! | ACTTTGTAGGGCACTCTCAA+AGG | + | chr1.1:632824-632843 | None:intergenic | 45.0% |
| ! | ATAGGAAGCATAACCAAGGG+AGG | + | chr1.1:633332-633351 | None:intergenic | 45.0% |
| ! | GGACATAGGAAGCATAACCA+AGG | + | chr1.1:633336-633355 | None:intergenic | 45.0% |
| ! | GTTTAAGGCTTGAGCTGCAT+AGG | - | chr1.1:635116-635135 | MS.gene27073:CDS | 45.0% |
| !! | GAGAGTGCCCTACAAAGTTA+GGG | - | chr1.1:632826-632845 | MS.gene27073:intron | 45.0% |
| !! | GATGCTGCTTTCGATCAAAG+TGG | + | chr1.1:634391-634410 | None:intergenic | 45.0% |
| !! | TGAGAGTGCCCTACAAAGTT+AGG | - | chr1.1:632825-632844 | MS.gene27073:intron | 45.0% |
| !! | TGATTTAATATATTATAAAT+TGG | - | chr1.1:634289-634308 | MS.gene27073:intron | 5.0% |
| ACCTTTCAAGGAAAACGCGG+AGG | + | chr1.1:633370-633389 | None:intergenic | 50.0% | |
| CAACCGACCATCTTCTGATG+TGG | + | chr1.1:634203-634222 | None:intergenic | 50.0% | |
| CATCAGAAGATGGTCGGTTG+TGG | - | chr1.1:634203-634222 | MS.gene27073:intron | 50.0% | |
| CCTTTCAAGGAAAACGCGGA+GGG | + | chr1.1:633369-633388 | None:intergenic | 50.0% | |
| GGGTCAGCTACATGGATCAA+AGG | + | chr1.1:632706-632725 | None:intergenic | 50.0% | |
| GGTAGATGGATGGGTGGATA+TGG | - | chr1.1:634142-634161 | MS.gene27073:intron | 50.0% | |
| GTCCTTTATGCTTCCTCCCT+TGG | - | chr1.1:633316-633335 | MS.gene27073:intron | 50.0% | |
| GTGCCACATCAGAAGATGGT+CGG | - | chr1.1:634197-634216 | MS.gene27073:intron | 50.0% | |
| ! | TGGAGTGCCACATCAGAAGA+TGG | - | chr1.1:634193-634212 | MS.gene27073:intron | 50.0% |
| !! | AACGCGGAGGGTATTTGATG+AGG | + | chr1.1:633357-633376 | None:intergenic | 50.0% |
| GTGATTGCTGAGGGTTGGGT+TGG | - | chr1.1:634923-634942 | MS.gene27073:intron | 55.0% | |
| ! | CCCTCCGCGTTTTCCTTGAA+AGG | - | chr1.1:633366-633385 | MS.gene27073:intron | 55.0% |
| !! | TGCTGAGGGTTGGGTTGGAG+TGG | - | chr1.1:634928-634947 | MS.gene27073:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 632343 | 635337 | 632343 | ID=MS.gene27073 |
| chr1.1 | mRNA | 632343 | 635337 | 632343 | ID=MS.gene27073.t1;Parent=MS.gene27073 |
| chr1.1 | exon | 635335 | 635337 | 635335 | ID=MS.gene27073.t1.exon1;Parent=MS.gene27073.t1 |
| chr1.1 | CDS | 635335 | 635337 | 635335 | ID=cds.MS.gene27073.t1;Parent=MS.gene27073.t1 |
| chr1.1 | exon | 635093 | 635242 | 635093 | ID=MS.gene27073.t1.exon2;Parent=MS.gene27073.t1 |
| chr1.1 | CDS | 635093 | 635242 | 635093 | ID=cds.MS.gene27073.t1;Parent=MS.gene27073.t1 |
| chr1.1 | exon | 633787 | 633960 | 633787 | ID=MS.gene27073.t1.exon3;Parent=MS.gene27073.t1 |
| chr1.1 | CDS | 633787 | 633960 | 633787 | ID=cds.MS.gene27073.t1;Parent=MS.gene27073.t1 |
| chr1.1 | exon | 632611 | 632670 | 632611 | ID=MS.gene27073.t1.exon4;Parent=MS.gene27073.t1 |
| chr1.1 | CDS | 632611 | 632670 | 632611 | ID=cds.MS.gene27073.t1;Parent=MS.gene27073.t1 |
| chr1.1 | exon | 632343 | 632384 | 632343 | ID=MS.gene27073.t1.exon5;Parent=MS.gene27073.t1 |
| chr1.1 | CDS | 632343 | 632384 | 632343 | ID=cds.MS.gene27073.t1;Parent=MS.gene27073.t1 |
| Gene Sequence |
| Protein sequence |
