Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27119.t1 | XP_013466230.1 | 100 | 182 | 0 | 0 | 1 | 182 | 45 | 226 | 2.90E-71 | 278.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27119.t1 | Q9LPU2 | 69.8 | 182 | 55 | 0 | 1 | 182 | 48 | 229 | 5.6e-63 | 241.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27119.t1 | A0A072VF94 | 100.0 | 182 | 0 | 0 | 1 | 182 | 45 | 226 | 2.1e-71 | 278.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene27119 | 0.829622 | 4.64E-55 | -1.69E-46 |
| MS.gene049227 | MS.gene27119 | 0.835683 | 1.46E-56 | -1.69E-46 |
| MS.gene049350 | MS.gene27119 | 0.824563 | 7.54E-54 | -1.69E-46 |
| MS.gene049711 | MS.gene27119 | 0.81374 | 2.20E-51 | -1.69E-46 |
| MS.gene049807 | MS.gene27119 | 0.873506 | 1.39E-67 | -1.69E-46 |
| MS.gene049887 | MS.gene27119 | 0.821752 | 3.42E-53 | -1.69E-46 |
| MS.gene050224 | MS.gene27119 | 0.823035 | 1.72E-53 | -1.69E-46 |
| MS.gene050257 | MS.gene27119 | 0.805722 | 1.16E-49 | -1.69E-46 |
| MS.gene050258 | MS.gene27119 | 0.818428 | 1.97E-52 | -1.69E-46 |
| MS.gene050348 | MS.gene27119 | 0.809333 | 1.99E-50 | -1.69E-46 |
| MS.gene050414 | MS.gene27119 | 0.809278 | 2.05E-50 | -1.69E-46 |
| MS.gene050551 | MS.gene27119 | 0.813264 | 2.79E-51 | -1.69E-46 |
| MS.gene051102 | MS.gene27119 | 0.803316 | 3.70E-49 | -1.69E-46 |
| MS.gene051234 | MS.gene27119 | 0.823163 | 1.61E-53 | -1.69E-46 |
| MS.gene051279 | MS.gene27119 | 0.802246 | 6.15E-49 | -1.69E-46 |
| MS.gene051724 | MS.gene27119 | 0.80844 | 3.09E-50 | -1.69E-46 |
| MS.gene052155 | MS.gene27119 | -0.807782 | 4.27E-50 | -1.69E-46 |
| MS.gene052307 | MS.gene27119 | 0.855545 | 5.87E-62 | -1.69E-46 |
| MS.gene052335 | MS.gene27119 | 0.824545 | 7.62E-54 | -1.69E-46 |
| MS.gene052463 | MS.gene27119 | 0.815494 | 8.98E-52 | -1.69E-46 |
| MS.gene052514 | MS.gene27119 | 0.842764 | 2.12E-58 | -1.69E-46 |
| MS.gene052516 | MS.gene27119 | 0.825103 | 5.62E-54 | -1.69E-46 |
| MS.gene052609 | MS.gene27119 | 0.878597 | 2.47E-69 | -1.69E-46 |
| MS.gene053079 | MS.gene27119 | 0.806508 | 7.95E-50 | -1.69E-46 |
| MS.gene053143 | MS.gene27119 | 0.875543 | 2.84E-68 | -1.69E-46 |
| MS.gene053144 | MS.gene27119 | 0.867689 | 1.14E-65 | -1.69E-46 |
| MS.gene053581 | MS.gene27119 | 0.800501 | 1.40E-48 | -1.69E-46 |
| MS.gene054584 | MS.gene27119 | 0.852576 | 4.22E-61 | -1.69E-46 |
| MS.gene054585 | MS.gene27119 | 0.813982 | 1.94E-51 | -1.69E-46 |
| MS.gene054709 | MS.gene27119 | 0.800012 | 1.76E-48 | -1.69E-46 |
| MS.gene054824 | MS.gene27119 | 0.825969 | 3.51E-54 | -1.69E-46 |
| MS.gene055469 | MS.gene27119 | 0.804734 | 1.87E-49 | -1.69E-46 |
| MS.gene055513 | MS.gene27119 | 0.813254 | 2.81E-51 | -1.69E-46 |
| MS.gene056308 | MS.gene27119 | 0.83842 | 2.91E-57 | -1.69E-46 |
| MS.gene056507 | MS.gene27119 | 0.820439 | 6.85E-53 | -1.69E-46 |
| MS.gene056578 | MS.gene27119 | 0.802377 | 5.77E-49 | -1.69E-46 |
| MS.gene056677 | MS.gene27119 | 0.823358 | 1.45E-53 | -1.69E-46 |
| MS.gene056699 | MS.gene27119 | 0.813398 | 2.61E-51 | -1.69E-46 |
| MS.gene057102 | MS.gene27119 | 0.806443 | 8.21E-50 | -1.69E-46 |
| MS.gene058010 | MS.gene27119 | 0.80215 | 6.43E-49 | -1.69E-46 |
| MS.gene058330 | MS.gene27119 | 0.813785 | 2.15E-51 | -1.69E-46 |
| MS.gene058649 | MS.gene27119 | 0.858781 | 6.51E-63 | -1.69E-46 |
| MS.gene058668 | MS.gene27119 | 0.809963 | 1.46E-50 | -1.69E-46 |
| MS.gene059778 | MS.gene27119 | 0.813859 | 2.07E-51 | -1.69E-46 |
| MS.gene059965 | MS.gene27119 | 0.805681 | 1.19E-49 | -1.69E-46 |
| MS.gene061100 | MS.gene27119 | 0.842604 | 2.34E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 39 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCTTTGTGGGAGCTTATT+TGG | 0.141842 | 1.1:+43724 | MS.gene27119:CDS |
| GCTCTCTCTCTTATTATTCT+TGG | 0.167279 | 1.1:+45230 | MS.gene27119:CDS |
| TCGGTCATGGTTGTGGTTAT+TGG | 0.305025 | 1.1:+44374 | MS.gene27119:CDS |
| ACCAACTTTAAGATGTCTTC+TGG | 0.333926 | 1.1:+45290 | MS.gene27119:CDS |
| CATCCCGGTGATAGATATAT+TGG | 0.352609 | 1.1:-43760 | None:intergenic |
| TTCTAAGCATGTTCCTTTGT+GGG | 0.362172 | 1.1:+43713 | MS.gene27119:CDS |
| CTTCTAAGCATGTTCCTTTG+TGG | 0.365168 | 1.1:+43712 | MS.gene27119:CDS |
| ATCAAAACTAAGCATGATTC+CGG | 0.401274 | 1.1:+44292 | MS.gene27119:CDS |
| TTACCAGCGACTACTTTGAC+TGG | 0.414974 | 1.1:+43630 | None:intergenic |
| ATGGTTGTGGTTATTGGTGT+TGG | 0.416143 | 1.1:+44380 | MS.gene27119:CDS |
| TTTGCTGTAACTGCTCTTGT+CGG | 0.454803 | 1.1:+43660 | MS.gene27119:CDS |
| TTGAGTAGTGTTTGCTGTGA+AGG | 0.456859 | 1.1:-44337 | None:intergenic |
| ATGCTTAGAAGCAGAATAAC+CGG | 0.461497 | 1.1:-43700 | None:intergenic |
| ATAAGAGAGAGAGCTTGAAT+AGG | 0.463485 | 1.1:-45221 | None:intergenic |
| GATGTAAATGTTAACTTCAA+AGG | 0.465558 | 1.1:+44419 | MS.gene27119:CDS |
| CCATTGTTGTGATAGTCAAT+CGG | 0.479781 | 1.1:+45143 | MS.gene27119:intron |
| AGCCTCATGCTCAATTCCGT+TGG | 0.485954 | 1.1:+43789 | MS.gene27119:CDS |
| CTGAGATAGTAATCAACAAA+TGG | 0.487131 | 1.1:-45254 | None:intergenic |
| CGGTGGTTTGTGTGATGGAA+TGG | 0.496976 | 1.1:+44312 | MS.gene27119:CDS |
| ACCAGAAGACATCTTAAAGT+TGG | 0.497523 | 1.1:-45291 | None:intergenic |
| CTACAAAAGAAATATTCGAT+TGG | 0.521950 | 1.1:+45170 | MS.gene27119:CDS |
| GATTCCGGTGGTTTGTGTGA+TGG | 0.533242 | 1.1:+44307 | MS.gene27119:CDS |
| TGATGATACAACTGCTACAC+AGG | 0.539546 | 1.1:-44453 | None:intergenic |
| TTCACAGCAAACACTACTCA+AGG | 0.539879 | 1.1:+44339 | MS.gene27119:CDS |
| GTTGCCAATATATCTATCAC+CGG | 0.550759 | 1.1:+43756 | MS.gene27119:CDS |
| TACCAGCGACTACTTTGACT+GGG | 0.553992 | 1.1:+43631 | None:intergenic |
| GAAAGTGTCGGTCATGGTTG+TGG | 0.566114 | 1.1:+44367 | MS.gene27119:CDS |
| GGAAGTGAAAGTGTCGGTCA+TGG | 0.589747 | 1.1:+44361 | MS.gene27119:CDS |
| GGACTCGTCTCAAATGCTAC+CGG | 0.630645 | 1.1:+43681 | MS.gene27119:CDS |
| CATGAGGCTTAAGTTCATCC+CGG | 0.630737 | 1.1:-43775 | None:intergenic |
| CATTCCATCACACAAACCAC+CGG | 0.631892 | 1.1:-44311 | None:intergenic |
| AAAACTAAGCATGATTCCGG+TGG | 0.633913 | 1.1:+44295 | MS.gene27119:CDS |
| TTTGTTGATTACTATCTCAG+TGG | 0.635140 | 1.1:+45257 | MS.gene27119:CDS |
| TTGCCAATATATCTATCACC+GGG | 0.654090 | 1.1:+43757 | MS.gene27119:CDS |
| GCATACTTGGTAGAATCCAA+CGG | 0.658976 | 1.1:-43805 | None:intergenic |
| TCACAGCAAACACTACTCAA+GGG | 0.660525 | 1.1:+44340 | MS.gene27119:CDS |
| ATCCAACGGAATTGAGCATG+AGG | 0.660676 | 1.1:-43791 | None:intergenic |
| CTCAAGGGAAGTGAAAGTGT+CGG | 0.679931 | 1.1:+44355 | MS.gene27119:CDS |
| AACCAAATAAGCTCCCACAA+AGG | 0.703411 | 1.1:-43726 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAGAAAAAGAAACATT+TGG | + | chr1.1:44603-44622 | MS.gene27119:intron | 15.0% |
| !!! | AAAAAAAGAAGTTTGATTTA+AGG | - | chr1.1:45044-45063 | None:intergenic | 15.0% |
| !!! | AATAAATCTATTGATTTGTT+GGG | - | chr1.1:44636-44655 | None:intergenic | 15.0% |
| !!! | GAAAATGAAAATTTTAAAAC+TGG | - | chr1.1:44251-44270 | None:intergenic | 15.0% |
| !!! | TAATAAATCTATTGATTTGT+TGG | - | chr1.1:44637-44656 | None:intergenic | 15.0% |
| !! | AAAAAGAAACATTTGGTTAT+GGG | + | chr1.1:44610-44629 | MS.gene27119:intron | 20.0% |
| !! | AAAGGACATCTTAATATAAA+TGG | - | chr1.1:44549-44568 | None:intergenic | 20.0% |
| !! | AACACTTGAATATAAATAAC+AGG | - | chr1.1:44575-44594 | None:intergenic | 20.0% |
| !! | AATATAAATAACAGGAGAAA+AGG | - | chr1.1:44567-44586 | None:intergenic | 20.0% |
| !!! | AATGAAAATTTTAAAACTGG+AGG | - | chr1.1:44248-44267 | None:intergenic | 20.0% |
| !!! | CATCATTTTTATTCTTTTGA+AGG | + | chr1.1:44757-44776 | MS.gene27119:intron | 20.0% |
| ! | AAAAAAAATCAGGTATAGCA+AGG | - | chr1.1:45122-45141 | None:intergenic | 25.0% |
| ! | AAAAAAATCAGGTATAGCAA+GGG | - | chr1.1:45121-45140 | None:intergenic | 25.0% |
| ! | AATTTAGAAATCAAACTGGT+TGG | - | chr1.1:45009-45028 | None:intergenic | 25.0% |
| ! | AGATTTAGAGATTAATGAGT+TGG | + | chr1.1:43988-44007 | MS.gene27119:intron | 25.0% |
| ! | ATGATTCTAAACCAGTAAAT+TGG | + | chr1.1:44857-44876 | MS.gene27119:intron | 25.0% |
| ! | CTACAAAAGAAATATTCGAT+TGG | + | chr1.1:45170-45189 | MS.gene27119:CDS | 25.0% |
| ! | GAAAAAGAAACATTTGGTTA+TGG | + | chr1.1:44609-44628 | MS.gene27119:intron | 25.0% |
| ! | GATGTAAATGTTAACTTCAA+AGG | + | chr1.1:44419-44438 | MS.gene27119:CDS | 25.0% |
| ! | TGGTAATTTAGAAATCAAAC+TGG | - | chr1.1:45013-45032 | None:intergenic | 25.0% |
| ! | TGGTCTATGATAGAATATTA+TGG | + | chr1.1:44023-44042 | MS.gene27119:intron | 25.0% |
| !! | TTCAGCATCTTTTATTATCT+TGG | + | chr1.1:44954-44973 | MS.gene27119:intron | 25.0% |
| !! | TTTGATTTAAGGAAGAAACT+TGG | - | chr1.1:45033-45052 | None:intergenic | 25.0% |
| AAACAGACTTCATTGTTAAC+AGG | + | chr1.1:44822-44841 | MS.gene27119:intron | 30.0% | |
| AAACTTCCTGTGTTATATAC+CGG | + | chr1.1:45070-45089 | MS.gene27119:intron | 30.0% | |
| AACAGACTTCATTGTTAACA+GGG | + | chr1.1:44823-44842 | MS.gene27119:intron | 30.0% | |
| ATCAAAACTAAGCATGATTC+CGG | + | chr1.1:44292-44311 | MS.gene27119:CDS | 30.0% | |
| CAACAATGGGAAAAAAAATC+AGG | - | chr1.1:45132-45151 | None:intergenic | 30.0% | |
| CAATTACTTGACCAATTTAC+TGG | - | chr1.1:44871-44890 | None:intergenic | 30.0% | |
| CAGTAAATTGGTCAAGTAAT+TGG | + | chr1.1:44869-44888 | MS.gene27119:intron | 30.0% | |
| CTGAGATAGTAATCAACAAA+TGG | - | chr1.1:45257-45276 | None:intergenic | 30.0% | |
| TATCATAGACCACCATATTT+CGG | - | chr1.1:44015-44034 | None:intergenic | 30.0% | |
| TCATTACTACAGAATCTACA+GGG | - | chr1.1:43889-43908 | None:intergenic | 30.0% | |
| TCTTTACAGCAAATTGTAAG+TGG | + | chr1.1:44476-44495 | MS.gene27119:intron | 30.0% | |
| ! | GATCTAAAATGAACATTGAC+TGG | - | chr1.1:44802-44821 | None:intergenic | 30.0% |
| ! | TTTGTTGATTACTATCTCAG+TGG | + | chr1.1:45257-45276 | MS.gene27119:CDS | 30.0% |
| ACAGACTTCATTGTTAACAG+GGG | + | chr1.1:44824-44843 | MS.gene27119:intron | 35.0% | |
| ACCAGAAGACATCTTAAAGT+TGG | - | chr1.1:45294-45313 | None:intergenic | 35.0% | |
| AGATGAAAAGCAAGCATACT+TGG | - | chr1.1:43821-43840 | None:intergenic | 35.0% | |
| ATAAGAGAGAGAGCTTGAAT+AGG | - | chr1.1:45224-45243 | None:intergenic | 35.0% | |
| ATGCTTAGAAGCAGAATAAC+CGG | - | chr1.1:43703-43722 | None:intergenic | 35.0% | |
| CCAACAAATAGCATGATTTC+CGG | - | chr1.1:45092-45111 | None:intergenic | 35.0% | |
| CCATTGTTGTGATAGTCAAT+CGG | + | chr1.1:45143-45162 | MS.gene27119:intron | 35.0% | |
| CGATTGACTATCACAACAAT+GGG | - | chr1.1:45145-45164 | None:intergenic | 35.0% | |
| GCTCTCTCTCTTATTATTCT+TGG | + | chr1.1:45230-45249 | MS.gene27119:CDS | 35.0% | |
| GTCATTACTACAGAATCTAC+AGG | - | chr1.1:43890-43909 | None:intergenic | 35.0% | |
| GTTGCCAATATATCTATCAC+CGG | + | chr1.1:43756-43775 | MS.gene27119:CDS | 35.0% | |
| GTTTCTCTTATAGATTTCCC+AGG | - | chr1.1:43959-43978 | None:intergenic | 35.0% | |
| TAAATTCCATATTGCCCACA+TGG | - | chr1.1:44523-44542 | None:intergenic | 35.0% | |
| TACAGACACATCTTTCATCT+GGG | + | chr1.1:44655-44674 | MS.gene27119:intron | 35.0% | |
| TGATTTCCGGTATATAACAC+AGG | - | chr1.1:45079-45098 | None:intergenic | 35.0% | |
| TTACAGACACATCTTTCATC+TGG | + | chr1.1:44654-44673 | MS.gene27119:intron | 35.0% | |
| TTCTAAGCATGTTCCTTTGT+GGG | + | chr1.1:43713-43732 | MS.gene27119:CDS | 35.0% | |
| TTGAATTGAAGATGAGTGCT+AGG | + | chr1.1:44701-44720 | MS.gene27119:intron | 35.0% | |
| TTGCCAATATATCTATCACC+GGG | + | chr1.1:43757-43776 | MS.gene27119:CDS | 35.0% | |
| ! | TAATGAGTTGGACCGAAATA+TGG | + | chr1.1:44000-44019 | MS.gene27119:intron | 35.0% |
| !! | ACCAACTTTAAGATGTCTTC+TGG | + | chr1.1:45290-45309 | MS.gene27119:CDS | 35.0% |
| AAAACTAAGCATGATTCCGG+TGG | + | chr1.1:44295-44314 | MS.gene27119:CDS | 40.0% | |
| AACCAAATAAGCTCCCACAA+AGG | - | chr1.1:43729-43748 | None:intergenic | 40.0% | |
| ATGGTTGTGGTTATTGGTGT+TGG | + | chr1.1:44380-44399 | MS.gene27119:CDS | 40.0% | |
| CATCCCGGTGATAGATATAT+TGG | - | chr1.1:43763-43782 | None:intergenic | 40.0% | |
| CCGATTGACTATCACAACAA+TGG | - | chr1.1:45146-45165 | None:intergenic | 40.0% | |
| CTTCTAAGCATGTTCCTTTG+TGG | + | chr1.1:43712-43731 | MS.gene27119:CDS | 40.0% | |
| GAAAGTGAAAACACGAGAGT+AGG | - | chr1.1:44214-44233 | None:intergenic | 40.0% | |
| GCATACTTGGTAGAATCCAA+CGG | - | chr1.1:43808-43827 | None:intergenic | 40.0% | |
| TCAATCCTTAACCCACTAAC+CGG | - | chr1.1:44074-44093 | None:intergenic | 40.0% | |
| TCACAGCAAACACTACTCAA+GGG | + | chr1.1:44340-44359 | MS.gene27119:CDS | 40.0% | |
| TGATGATACAACTGCTACAC+AGG | - | chr1.1:44456-44475 | None:intergenic | 40.0% | |
| TTCACAGCAAACACTACTCA+AGG | + | chr1.1:44339-44358 | MS.gene27119:CDS | 40.0% | |
| TTCCTTTGTGGGAGCTTATT+TGG | + | chr1.1:43724-43743 | MS.gene27119:CDS | 40.0% | |
| ! | CCGGAAATCATGCTATTTGT+TGG | + | chr1.1:45089-45108 | MS.gene27119:intron | 40.0% |
| ! | TTTGCTGTAACTGCTCTTGT+CGG | + | chr1.1:43660-43679 | MS.gene27119:CDS | 40.0% |
| !! | CTTCCTTTTAGAGACATGTG+CGG | + | chr1.1:44141-44160 | MS.gene27119:intron | 40.0% |
| !! | TTGAGTAGTGTTTGCTGTGA+AGG | - | chr1.1:44340-44359 | None:intergenic | 40.0% |
| AATGTGTCTGTTCCACCATG+TGG | + | chr1.1:44505-44524 | MS.gene27119:intron | 45.0% | |
| ATCCAACGGAATTGAGCATG+AGG | - | chr1.1:43794-43813 | None:intergenic | 45.0% | |
| ATGTGTCTGTTCCACCATGT+GGG | + | chr1.1:44506-44525 | MS.gene27119:intron | 45.0% | |
| ATTCCATATTGCCCACATGG+TGG | - | chr1.1:44520-44539 | None:intergenic | 45.0% | |
| CATGAGGCTTAAGTTCATCC+CGG | - | chr1.1:43778-43797 | None:intergenic | 45.0% | |
| CATTCCATCACACAAACCAC+CGG | - | chr1.1:44314-44333 | None:intergenic | 45.0% | |
| CTACCGCACATGTCTCTAAA+AGG | - | chr1.1:44147-44166 | None:intergenic | 45.0% | |
| TCGGTCATGGTTGTGGTTAT+TGG | + | chr1.1:44374-44393 | MS.gene27119:CDS | 45.0% | |
| TGTTCATCAGCACTATTCGC+TGG | - | chr1.1:44902-44921 | None:intergenic | 45.0% | |
| ! | AGATTTCCCAGGTTTTCCAC+TGG | - | chr1.1:43948-43967 | None:intergenic | 45.0% |
| ! | CTCAAGGGAAGTGAAAGTGT+CGG | + | chr1.1:44355-44374 | MS.gene27119:CDS | 45.0% |
| ! | TGAGTTGGACCGAAATATGG+TGG | + | chr1.1:44003-44022 | MS.gene27119:intron | 45.0% |
| ACTACAGCCAGTGGAAAACC+TGG | + | chr1.1:43938-43957 | MS.gene27119:intron | 50.0% | |
| AGCCTCATGCTCAATTCCGT+TGG | + | chr1.1:43789-43808 | MS.gene27119:CDS | 50.0% | |
| AGTCAGATCACTACAGCCAG+TGG | + | chr1.1:43929-43948 | MS.gene27119:intron | 50.0% | |
| CTACAGCCAGTGGAAAACCT+GGG | + | chr1.1:43939-43958 | MS.gene27119:intron | 50.0% | |
| CTTAACCCACTAACCGGAGT+CGG | - | chr1.1:44068-44087 | None:intergenic | 50.0% | |
| GGACTCGTCTCAAATGCTAC+CGG | + | chr1.1:43681-43700 | MS.gene27119:CDS | 50.0% | |
| GTTCCACCATGTGGGCAATA+TGG | + | chr1.1:44514-44533 | MS.gene27119:intron | 50.0% | |
| ! | CGGTGGTTTGTGTGATGGAA+TGG | + | chr1.1:44312-44331 | MS.gene27119:CDS | 50.0% |
| ! | GATTCCGGTGGTTTGTGTGA+TGG | + | chr1.1:44307-44326 | MS.gene27119:CDS | 50.0% |
| ! | TTGATCCATGTAGCCGACTC+CGG | + | chr1.1:44052-44071 | MS.gene27119:intron | 50.0% |
| !! | GAAAGTGTCGGTCATGGTTG+TGG | + | chr1.1:44367-44386 | MS.gene27119:CDS | 50.0% |
| !! | GGAAGTGAAAGTGTCGGTCA+TGG | + | chr1.1:44361-44380 | MS.gene27119:CDS | 50.0% |
| ACTAACCGGAGTCGGCTACA+TGG | - | chr1.1:44060-44079 | None:intergenic | 55.0% | |
| ! | ATGTAGCCGACTCCGGTTAG+TGG | + | chr1.1:44059-44078 | MS.gene27119:intron | 55.0% |
| ! | TGTAGCCGACTCCGGTTAGT+GGG | + | chr1.1:44060-44079 | MS.gene27119:intron | 55.0% |
| !! | CGACTCCGGTTAGTGGGTTA+AGG | + | chr1.1:44066-44085 | MS.gene27119:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 43637 | 45319 | 43637 | ID=MS.gene27119 |
| chr1.1 | mRNA | 43637 | 45319 | 43637 | ID=MS.gene27119.t1;Parent=MS.gene27119 |
| chr1.1 | exon | 43637 | 43821 | 43637 | ID=MS.gene27119.t1.exon1;Parent=MS.gene27119.t1 |
| chr1.1 | CDS | 43637 | 43821 | 43637 | ID=cds.MS.gene27119.t1;Parent=MS.gene27119.t1 |
| chr1.1 | exon | 44290 | 44490 | 44290 | ID=MS.gene27119.t1.exon2;Parent=MS.gene27119.t1 |
| chr1.1 | CDS | 44290 | 44490 | 44290 | ID=cds.MS.gene27119.t1;Parent=MS.gene27119.t1 |
| chr1.1 | exon | 45158 | 45319 | 45158 | ID=MS.gene27119.t1.exon3;Parent=MS.gene27119.t1 |
| chr1.1 | CDS | 45158 | 45319 | 45158 | ID=cds.MS.gene27119.t1;Parent=MS.gene27119.t1 |
| Gene Sequence |
| Protein sequence |
