Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27413.t1 | RHN52383.1 | 97.6 | 289 | 7 | 0 | 1 | 289 | 1 | 289 | 1.70E-137 | 498.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27413.t1 | Q9LDE2 | 57.5 | 294 | 105 | 7 | 1 | 289 | 1 | 279 | 3.0e-66 | 253.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27413.t1 | A0A396HIF8 | 97.6 | 289 | 7 | 0 | 1 | 289 | 1 | 289 | 1.2e-137 | 498.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene27413.t1 | TF | BBR-BPC |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049411 | MS.gene27413 | 0.830106 | 3.54E-55 | -1.69E-46 |
| MS.gene050689 | MS.gene27413 | 0.808224 | 3.44E-50 | -1.69E-46 |
| MS.gene050752 | MS.gene27413 | 0.804521 | 2.08E-49 | -1.69E-46 |
| MS.gene050838 | MS.gene27413 | 0.846825 | 1.70E-59 | -1.69E-46 |
| MS.gene051003 | MS.gene27413 | 0.814411 | 1.56E-51 | -1.69E-46 |
| MS.gene051234 | MS.gene27413 | 0.838267 | 3.18E-57 | -1.69E-46 |
| MS.gene051343 | MS.gene27413 | 0.809307 | 2.02E-50 | -1.69E-46 |
| MS.gene051642 | MS.gene27413 | 0.807283 | 5.45E-50 | -1.69E-46 |
| MS.gene051746 | MS.gene27413 | 0.802909 | 4.49E-49 | -1.69E-46 |
| MS.gene051748 | MS.gene27413 | 0.800038 | 1.74E-48 | -1.69E-46 |
| MS.gene05188 | MS.gene27413 | 0.80661 | 7.57E-50 | -1.69E-46 |
| MS.gene051975 | MS.gene27413 | 0.832331 | 1.00E-55 | -1.69E-46 |
| MS.gene052072 | MS.gene27413 | 0.82423 | 9.03E-54 | -1.69E-46 |
| MS.gene052947 | MS.gene27413 | 0.821026 | 5.02E-53 | -1.69E-46 |
| MS.gene053058 | MS.gene27413 | 0.821139 | 4.73E-53 | -1.69E-46 |
| MS.gene053564 | MS.gene27413 | 0.807476 | 4.96E-50 | -1.69E-46 |
| MS.gene053952 | MS.gene27413 | 0.809507 | 1.83E-50 | -1.69E-46 |
| MS.gene05469 | MS.gene27413 | 0.825851 | 3.74E-54 | -1.69E-46 |
| MS.gene055311 | MS.gene27413 | 0.81818 | 2.24E-52 | -1.69E-46 |
| MS.gene056986 | MS.gene27413 | 0.821826 | 3.28E-53 | -1.69E-46 |
| MS.gene057094 | MS.gene27413 | 0.82684 | 2.18E-54 | -1.69E-46 |
| MS.gene059146 | MS.gene27413 | 0.830734 | 2.49E-55 | -1.69E-46 |
| MS.gene059227 | MS.gene27413 | 0.811968 | 5.37E-51 | -1.69E-46 |
| MS.gene06011 | MS.gene27413 | 0.810137 | 1.34E-50 | -1.69E-46 |
| MS.gene060763 | MS.gene27413 | 0.816428 | 5.56E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27413.t1 | MTR_1g023660 | 55.263 | 114 | 51 | 0 | 176 | 289 | 227 | 340 | 1.67e-45 | 157 |
| MS.gene27413.t1 | MTR_8g099780 | 32.806 | 253 | 163 | 4 | 40 | 289 | 64 | 312 | 1.76e-44 | 153 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27413.t1 | AT2G01930 | 51.163 | 301 | 117 | 10 | 1 | 289 | 1 | 283 | 1.05e-94 | 281 |
| MS.gene27413.t1 | AT2G01930 | 51.163 | 301 | 117 | 10 | 1 | 289 | 1 | 283 | 1.05e-94 | 281 |
| MS.gene27413.t1 | AT1G14685 | 50.847 | 295 | 123 | 8 | 1 | 289 | 1 | 279 | 3.53e-88 | 264 |
| MS.gene27413.t1 | AT1G14685 | 50.847 | 295 | 123 | 8 | 1 | 289 | 1 | 279 | 3.53e-88 | 264 |
| MS.gene27413.t1 | AT1G14685 | 50.847 | 295 | 123 | 8 | 1 | 289 | 1 | 279 | 3.53e-88 | 264 |
| MS.gene27413.t1 | AT1G14685 | 50.847 | 295 | 123 | 8 | 1 | 289 | 1 | 279 | 3.53e-88 | 264 |
| MS.gene27413.t1 | AT1G68120 | 46.780 | 295 | 120 | 10 | 4 | 289 | 3 | 269 | 7.62e-77 | 235 |
| MS.gene27413.t1 | AT2G35550 | 54.422 | 147 | 65 | 2 | 143 | 289 | 82 | 226 | 6.13e-50 | 165 |
| MS.gene27413.t1 | AT2G35550 | 54.422 | 147 | 65 | 2 | 143 | 289 | 82 | 226 | 6.13e-50 | 165 |
| MS.gene27413.t1 | AT2G35550 | 54.422 | 147 | 65 | 2 | 143 | 289 | 82 | 226 | 6.13e-50 | 165 |
| MS.gene27413.t1 | AT2G35550 | 54.422 | 147 | 65 | 2 | 143 | 289 | 127 | 271 | 8.48e-50 | 166 |
| MS.gene27413.t1 | AT2G21240 | 32.830 | 265 | 163 | 5 | 28 | 289 | 44 | 296 | 4.84e-44 | 152 |
| MS.gene27413.t1 | AT2G21240 | 32.830 | 265 | 163 | 5 | 28 | 289 | 44 | 296 | 4.84e-44 | 152 |
| MS.gene27413.t1 | AT5G42520 | 56.075 | 107 | 46 | 1 | 184 | 289 | 176 | 282 | 5.36e-42 | 146 |
| MS.gene27413.t1 | AT5G42520 | 56.075 | 107 | 46 | 1 | 184 | 289 | 232 | 338 | 7.85e-42 | 147 |
| MS.gene27413.t1 | AT5G42520 | 56.075 | 107 | 46 | 1 | 184 | 289 | 236 | 342 | 1.06e-41 | 147 |
| MS.gene27413.t1 | AT4G38910 | 43.478 | 138 | 77 | 1 | 152 | 289 | 122 | 258 | 1.21e-41 | 144 |
| MS.gene27413.t1 | AT4G38910 | 43.478 | 138 | 77 | 1 | 152 | 289 | 147 | 283 | 1.70e-41 | 145 |
Find 97 sgRNAs with CRISPR-Local
Find 99 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATATCACCATCGGGAAAT+TGG | 0.178341 | 6.2:+75053133 | MS.gene27413:CDS |
| CGATAGATTTGAGGACTTAT+TGG | 0.234611 | 6.2:+75053782 | MS.gene27413:CDS |
| TGCAATTAACGGGATTGATT+TGG | 0.279573 | 6.2:+75053525 | MS.gene27413:CDS |
| GATAGATTTGAGGACTTATT+GGG | 0.312732 | 6.2:+75053783 | MS.gene27413:CDS |
| CCAACAAGTTTGTTACTATC+AGG | 0.343708 | 6.2:+75053818 | MS.gene27413:CDS |
| GCCTCAAACTACTTACCCTT+TGG | 0.344791 | 6.2:+75053159 | MS.gene27413:CDS |
| ATTCCTGTTTGTTCTTGCAC+TGG | 0.347046 | 6.2:+75053565 | MS.gene27413:CDS |
| CTTACCCTTTGGATTATATG+AGG | 0.349085 | 6.2:+75053170 | MS.gene27413:CDS |
| CACCTCAACAATGTTATAGA+TGG | 0.355446 | 6.2:+75053590 | MS.gene27413:CDS |
| ATGGACTTAACATAAGCAAT+TGG | 0.360767 | 6.2:+75052987 | MS.gene27413:CDS |
| TTTCTAATCCGATAGATTTG+AGG | 0.399273 | 6.2:+75053773 | MS.gene27413:CDS |
| AATGATTCGACCATGTGAAT+TGG | 0.408906 | 6.2:+75053309 | MS.gene27413:CDS |
| CATATCACCATCGGGAAATT+GGG | 0.409037 | 6.2:+75053134 | MS.gene27413:CDS |
| CCGGAAAAGCCGCCTCTGAT+TGG | 0.413055 | 6.2:+75053073 | MS.gene27413:CDS |
| TGGACTTAACATAAGCAATT+GGG | 0.420997 | 6.2:+75052988 | MS.gene27413:CDS |
| CTACGGAAATTGCAATTAAC+GGG | 0.422090 | 6.2:+75053515 | MS.gene27413:CDS |
| TTAGGAGACTTCGGCACCTT+CGG | 0.426454 | 6.2:-75053406 | None:intergenic |
| TCGACCATGTGAATTGGTTA+AGG | 0.427145 | 6.2:+75053315 | MS.gene27413:CDS |
| ACTACGGAAATTGCAATTAA+CGG | 0.434305 | 6.2:+75053514 | MS.gene27413:CDS |
| CCTGATAGTAACAAACTTGT+TGG | 0.444146 | 6.2:-75053818 | None:intergenic |
| CTATAACCTGGAGGGTTAGT+AGG | 0.446214 | 6.2:-75053247 | None:intergenic |
| CGAAATGCCGCGGTTATGTC+GGG | 0.452368 | 6.2:+75053100 | MS.gene27413:CDS |
| CTCTTCGGCTTCTTTGCCTT+AGG | 0.455380 | 6.2:-75053424 | None:intergenic |
| ACCACAGGTGCTTCCTCCAT+TGG | 0.459398 | 6.2:-75053346 | None:intergenic |
| TAATTTAGTGTTGTAATGGA+TGG | 0.462352 | 6.2:+75052959 | None:intergenic |
| ATAGATGGGGCTCGGGTGGA+TGG | 0.464652 | 6.2:+75053605 | MS.gene27413:CDS |
| TTCCTGTTTGTTCTTGCACT+GGG | 0.468493 | 6.2:+75053566 | MS.gene27413:CDS |
| TGATTCTTAAAAGATGAAAC+AGG | 0.473276 | 6.2:-75053022 | None:intergenic |
| AGGTTATAGTACTAGTATTC+CGG | 0.475931 | 6.2:+75053261 | MS.gene27413:CDS |
| GTTGTAATGGATGGAGATAA+TGG | 0.478647 | 6.2:+75052968 | None:intergenic |
| ACAATGTTATAGATGGGGCT+CGG | 0.487220 | 6.2:+75053597 | MS.gene27413:CDS |
| GGCACACGAGGTCCTCTCTT+CGG | 0.493154 | 6.2:-75053439 | None:intergenic |
| CCATTCACCTTCTCGACCAC+AGG | 0.494618 | 6.2:-75053361 | None:intergenic |
| ACAACTGATGCCATCGATGC+CGG | 0.499881 | 6.2:+75053054 | MS.gene27413:CDS |
| TTCTTTGCCTTAGGAGACTT+CGG | 0.501514 | 6.2:-75053415 | None:intergenic |
| GTCCCAGTGCAAGAACAAAC+AGG | 0.501675 | 6.2:-75053568 | None:intergenic |
| TCGAAATGCCGCGGTTATGT+CGG | 0.501909 | 6.2:+75053099 | MS.gene27413:CDS |
| GTGCAAGAACAAACAGGAAT+CGG | 0.503075 | 6.2:-75053562 | None:intergenic |
| GAAGGAGAATTCTCGTCCTT+CGG | 0.503811 | 6.2:-75053460 | None:intergenic |
| CAATGTTATAGATGGGGCTC+GGG | 0.507375 | 6.2:+75053598 | MS.gene27413:CDS |
| CCTGTGGTCGAGAAGGTGAA+TGG | 0.509475 | 6.2:+75053361 | MS.gene27413:CDS |
| ACCTCAACAATGTTATAGAT+GGG | 0.523017 | 6.2:+75053591 | MS.gene27413:CDS |
| CCGCGTCGTTTAGTACTCAT+AGG | 0.528654 | 6.2:-75053670 | None:intergenic |
| CAATAAGTCCTCAAATCTAT+CGG | 0.528692 | 6.2:-75053781 | None:intergenic |
| GTCGAGAAGGTGAATGGAAC+TGG | 0.530658 | 6.2:+75053367 | MS.gene27413:CDS |
| TCCAAAGGGTAAGTAGTTTG+AGG | 0.531276 | 6.2:-75053160 | None:intergenic |
| GAAGGACGAGAATTCTCCTT+CGG | 0.531353 | 6.2:+75053462 | MS.gene27413:CDS |
| CTTGGTGTTCGTTGAACCGA+AGG | 0.532361 | 6.2:-75053478 | None:intergenic |
| TTACCCTTTGGATTATATGA+GGG | 0.536203 | 6.2:+75053171 | MS.gene27413:CDS |
| CATCCCTCATATAATCCAAA+GGG | 0.541845 | 6.2:-75053174 | None:intergenic |
| TGTTATAGATGGGGCTCGGG+TGG | 0.542239 | 6.2:+75053601 | MS.gene27413:CDS |
| TGGATTATATGAGGGATGCA+TGG | 0.548813 | 6.2:+75053179 | MS.gene27413:CDS |
| TTCTCGTCCTTCGGCACACG+AGG | 0.552572 | 6.2:-75053451 | None:intergenic |
| TAACGGTGCATATCACCATC+GGG | 0.558932 | 6.2:+75053126 | MS.gene27413:CDS |
| ATTAGAGAAACTTGCAGCCG+AGG | 0.559521 | 6.2:+75053741 | MS.gene27413:CDS |
| ATTAGAAAAGTTATAACCCT+CGG | 0.560267 | 6.2:-75053758 | None:intergenic |
| AGGACTTATTGGGCAAAACA+TGG | 0.561945 | 6.2:+75053793 | MS.gene27413:CDS |
| ATGATACCTACTAACCCTCC+AGG | 0.562585 | 6.2:+75053241 | MS.gene27413:CDS |
| GAGAGGACCTCGTGTGCCGA+AGG | 0.571472 | 6.2:+75053444 | MS.gene27413:CDS |
| GCCGGAAGGAAAATGAGTAT+AGG | 0.573233 | 6.2:+75053703 | MS.gene27413:CDS |
| TTAGAGAAACTTGCAGCCGA+GGG | 0.574547 | 6.2:+75053742 | MS.gene27413:CDS |
| CGACGCGGTGCTAGAATAGC+CGG | 0.576753 | 6.2:+75053685 | MS.gene27413:CDS |
| TGATGAGCTGAAGATGTCTC+CGG | 0.579222 | 6.2:-75053280 | None:intergenic |
| GCGGTTATGTCGGGAACTAA+CGG | 0.579757 | 6.2:+75053109 | MS.gene27413:CDS |
| GGAAGCACCTGTGGTCGAGA+AGG | 0.588134 | 6.2:+75053354 | MS.gene27413:CDS |
| GAAGGTGCCGAAGTCTCCTA+AGG | 0.590939 | 6.2:+75053408 | MS.gene27413:CDS |
| GCATCCCTCATATAATCCAA+AGG | 0.600896 | 6.2:-75053175 | None:intergenic |
| GGACTTAACATAAGCAATTG+GGG | 0.601047 | 6.2:+75052989 | MS.gene27413:CDS |
| TTCGGTTCAACGAACACCAA+GGG | 0.601561 | 6.2:+75053480 | MS.gene27413:CDS |
| GCATTTCGACTTCCAATCAG+AGG | 0.603067 | 6.2:-75053085 | None:intergenic |
| CAAGTTTGTTACTATCAGGT+AGG | 0.604667 | 6.2:+75053822 | MS.gene27413:CDS |
| GCCAATGGAGGAAGCACCTG+TGG | 0.607095 | 6.2:+75053345 | MS.gene27413:CDS |
| CTAACGGTGCATATCACCAT+CGG | 0.608113 | 6.2:+75053125 | MS.gene27413:CDS |
| AAGGGCACAAAAGAAAACTA+CGG | 0.609634 | 6.2:+75053498 | MS.gene27413:CDS |
| CGTTTAGTACTCATAGGCAA+AGG | 0.610952 | 6.2:-75053664 | None:intergenic |
| ATGCATGGATTAGTAGTCAG+AGG | 0.611474 | 6.2:+75053194 | MS.gene27413:CDS |
| GAGGCATCCCAATTTCCCGA+TGG | 0.615246 | 6.2:-75053141 | None:intergenic |
| AAGGCAAAGAAGCCGAAGAG+AGG | 0.622231 | 6.2:+75053427 | MS.gene27413:CDS |
| CCCCATCTATAACATTGTTG+AGG | 0.623582 | 6.2:-75053592 | None:intergenic |
| TAAGAAGAGGCAAGGACCGA+AGG | 0.629324 | 6.2:+75053390 | MS.gene27413:CDS |
| TACTAGTACTATAACCTGGA+GGG | 0.630649 | 6.2:-75053255 | None:intergenic |
| TCTTCCTTAACCAATTCACA+TGG | 0.638004 | 6.2:-75053319 | None:intergenic |
| GGAATACTAGTACTATAACC+TGG | 0.638956 | 6.2:-75053259 | None:intergenic |
| GGTTAAGGAAGAAATGCCAA+TGG | 0.642003 | 6.2:+75053330 | MS.gene27413:CDS |
| TGCATGGATTAGTAGTCAGA+GGG | 0.642777 | 6.2:+75053195 | MS.gene27413:CDS |
| TGAATGGAACTGGTAAGAAG+AGG | 0.650068 | 6.2:+75053377 | MS.gene27413:CDS |
| GGAACTGGTAAGAAGAGGCA+AGG | 0.651851 | 6.2:+75053382 | MS.gene27413:CDS |
| TTTCGACTTCCAATCAGAGG+CGG | 0.656585 | 6.2:-75053082 | None:intergenic |
| CCTCAACAATGTTATAGATG+GGG | 0.670226 | 6.2:+75053592 | MS.gene27413:CDS |
| TAAGGAAGAAATGCCAATGG+AGG | 0.676077 | 6.2:+75053333 | MS.gene27413:CDS |
| CTTCGGTTCAACGAACACCA+AGG | 0.677515 | 6.2:+75053479 | MS.gene27413:CDS |
| GATTGGAAGTCGAAATGCCG+CGG | 0.697890 | 6.2:+75053090 | MS.gene27413:CDS |
| ATACTAGTACTATAACCTGG+AGG | 0.700408 | 6.2:-75053256 | None:intergenic |
| GCAGTCTGCATGCTGCACAA+CGG | 0.723033 | 6.2:+75053627 | MS.gene27413:CDS |
| GCGGTGCTAGAATAGCCGGA+AGG | 0.737428 | 6.2:+75053689 | MS.gene27413:CDS |
| GTTAGTTCCCGACATAACCG+CGG | 0.737494 | 6.2:-75053107 | None:intergenic |
| CCTATGAGTACTAAACGACG+CGG | 0.777544 | 6.2:+75053670 | MS.gene27413:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | ATTAGAAAAGTTATAACCCT+CGG | - | chr6.2:75053761-75053780 | None:intergenic | 25.0% |
| ! | TGATTCTTAAAAGATGAAAC+AGG | - | chr6.2:75053025-75053044 | None:intergenic | 25.0% |
| !!! | TCATCTTTTAAGAATCATCT+TGG | + | chr6.2:75053028-75053047 | MS.gene27413:CDS | 25.0% |
| ACCTCAACAATGTTATAGAT+GGG | + | chr6.2:75053591-75053610 | MS.gene27413:CDS | 30.0% | |
| ACTACGGAAATTGCAATTAA+CGG | + | chr6.2:75053514-75053533 | MS.gene27413:CDS | 30.0% | |
| AGGTTATAGTACTAGTATTC+CGG | + | chr6.2:75053261-75053280 | MS.gene27413:CDS | 30.0% | |
| ATGGACTTAACATAAGCAAT+TGG | + | chr6.2:75052987-75053006 | MS.gene27413:CDS | 30.0% | |
| CAATAAGTCCTCAAATCTAT+CGG | - | chr6.2:75053784-75053803 | None:intergenic | 30.0% | |
| GATAGATTTGAGGACTTATT+GGG | + | chr6.2:75053783-75053802 | MS.gene27413:CDS | 30.0% | |
| TGGACTTAACATAAGCAATT+GGG | + | chr6.2:75052988-75053007 | MS.gene27413:CDS | 30.0% | |
| TTACCCTTTGGATTATATGA+GGG | + | chr6.2:75053171-75053190 | MS.gene27413:CDS | 30.0% | |
| TTTCTAATCCGATAGATTTG+AGG | + | chr6.2:75053773-75053792 | MS.gene27413:CDS | 30.0% | |
| AATGATTCGACCATGTGAAT+TGG | + | chr6.2:75053309-75053328 | MS.gene27413:CDS | 35.0% | |
| ATACTAGTACTATAACCTGG+AGG | - | chr6.2:75053259-75053278 | None:intergenic | 35.0% | |
| CACCTCAACAATGTTATAGA+TGG | + | chr6.2:75053590-75053609 | MS.gene27413:CDS | 35.0% | |
| CATCCCTCATATAATCCAAA+GGG | - | chr6.2:75053177-75053196 | None:intergenic | 35.0% | |
| CCTCAACAATGTTATAGATG+GGG | + | chr6.2:75053592-75053611 | MS.gene27413:CDS | 35.0% | |
| CCTGATAGTAACAAACTTGT+TGG | - | chr6.2:75053821-75053840 | None:intergenic | 35.0% | |
| CGATAGATTTGAGGACTTAT+TGG | + | chr6.2:75053782-75053801 | MS.gene27413:CDS | 35.0% | |
| CTACGGAAATTGCAATTAAC+GGG | + | chr6.2:75053515-75053534 | MS.gene27413:CDS | 35.0% | |
| CTTACCCTTTGGATTATATG+AGG | + | chr6.2:75053170-75053189 | MS.gene27413:CDS | 35.0% | |
| GGAATACTAGTACTATAACC+TGG | - | chr6.2:75053262-75053281 | None:intergenic | 35.0% | |
| GGACTTAACATAAGCAATTG+GGG | + | chr6.2:75052989-75053008 | MS.gene27413:CDS | 35.0% | |
| TACTAGTACTATAACCTGGA+GGG | - | chr6.2:75053258-75053277 | None:intergenic | 35.0% | |
| TCTTCCTTAACCAATTCACA+TGG | - | chr6.2:75053322-75053341 | None:intergenic | 35.0% | |
| TGCAATTAACGGGATTGATT+TGG | + | chr6.2:75053525-75053544 | MS.gene27413:CDS | 35.0% | |
| ! | AAGGGCACAAAAGAAAACTA+CGG | + | chr6.2:75053498-75053517 | MS.gene27413:CDS | 35.0% |
| ! | TCCTATACTCATTTTCCTTC+CGG | - | chr6.2:75053707-75053726 | None:intergenic | 35.0% |
| !! | CCAACAAGTTTGTTACTATC+AGG | + | chr6.2:75053818-75053837 | MS.gene27413:CDS | 35.0% |
| ACAATGTTATAGATGGGGCT+CGG | + | chr6.2:75053597-75053616 | MS.gene27413:CDS | 40.0% | |
| AGGACTTATTGGGCAAAACA+TGG | + | chr6.2:75053793-75053812 | MS.gene27413:CDS | 40.0% | |
| ATTCCTGTTTGTTCTTGCAC+TGG | + | chr6.2:75053565-75053584 | MS.gene27413:CDS | 40.0% | |
| CATATCACCATCGGGAAATT+GGG | + | chr6.2:75053134-75053153 | MS.gene27413:CDS | 40.0% | |
| CCCCATCTATAACATTGTTG+AGG | - | chr6.2:75053595-75053614 | None:intergenic | 40.0% | |
| CGTTTAGTACTCATAGGCAA+AGG | - | chr6.2:75053667-75053686 | None:intergenic | 40.0% | |
| GCATCCCTCATATAATCCAA+AGG | - | chr6.2:75053178-75053197 | None:intergenic | 40.0% | |
| GGTTAAGGAAGAAATGCCAA+TGG | + | chr6.2:75053330-75053349 | MS.gene27413:CDS | 40.0% | |
| GTGCAAGAACAAACAGGAAT+CGG | - | chr6.2:75053565-75053584 | None:intergenic | 40.0% | |
| TAAGGAAGAAATGCCAATGG+AGG | + | chr6.2:75053333-75053352 | MS.gene27413:CDS | 40.0% | |
| TCCAAAGGGTAAGTAGTTTG+AGG | - | chr6.2:75053163-75053182 | None:intergenic | 40.0% | |
| TCGACCATGTGAATTGGTTA+AGG | + | chr6.2:75053315-75053334 | MS.gene27413:CDS | 40.0% | |
| TGAATGGAACTGGTAAGAAG+AGG | + | chr6.2:75053377-75053396 | MS.gene27413:CDS | 40.0% | |
| TGGATTATATGAGGGATGCA+TGG | + | chr6.2:75053179-75053198 | MS.gene27413:CDS | 40.0% | |
| TTCCTGTTTGTTCTTGCACT+GGG | + | chr6.2:75053566-75053585 | MS.gene27413:CDS | 40.0% | |
| TTCTTTGCCTTAGGAGACTT+CGG | - | chr6.2:75053418-75053437 | None:intergenic | 40.0% | |
| ! | GTAGTTTTCTTTTGTGCCCT+TGG | - | chr6.2:75053499-75053518 | None:intergenic | 40.0% |
| !! | ATGCATGGATTAGTAGTCAG+AGG | + | chr6.2:75053194-75053213 | MS.gene27413:CDS | 40.0% |
| !! | TGCATGGATTAGTAGTCAGA+GGG | + | chr6.2:75053195-75053214 | MS.gene27413:CDS | 40.0% |
| ATGATACCTACTAACCCTCC+AGG | + | chr6.2:75053241-75053260 | MS.gene27413:CDS | 45.0% | |
| ATTAGAGAAACTTGCAGCCG+AGG | + | chr6.2:75053741-75053760 | MS.gene27413:CDS | 45.0% | |
| CAATGTTATAGATGGGGCTC+GGG | + | chr6.2:75053598-75053617 | MS.gene27413:CDS | 45.0% | |
| CCTATGAGTACTAAACGACG+CGG | + | chr6.2:75053670-75053689 | MS.gene27413:CDS | 45.0% | |
| CTAACGGTGCATATCACCAT+CGG | + | chr6.2:75053125-75053144 | MS.gene27413:CDS | 45.0% | |
| GAAGGACGAGAATTCTCCTT+CGG | + | chr6.2:75053462-75053481 | MS.gene27413:CDS | 45.0% | |
| GAAGGAGAATTCTCGTCCTT+CGG | - | chr6.2:75053463-75053482 | None:intergenic | 45.0% | |
| GCATATCACCATCGGGAAAT+TGG | + | chr6.2:75053133-75053152 | MS.gene27413:CDS | 45.0% | |
| GCATTTCGACTTCCAATCAG+AGG | - | chr6.2:75053088-75053107 | None:intergenic | 45.0% | |
| GCCGGAAGGAAAATGAGTAT+AGG | + | chr6.2:75053703-75053722 | MS.gene27413:CDS | 45.0% | |
| GCCTCAAACTACTTACCCTT+TGG | + | chr6.2:75053159-75053178 | MS.gene27413:CDS | 45.0% | |
| TAACGGTGCATATCACCATC+GGG | + | chr6.2:75053126-75053145 | MS.gene27413:CDS | 45.0% | |
| TGATGAGCTGAAGATGTCTC+CGG | - | chr6.2:75053283-75053302 | None:intergenic | 45.0% | |
| TTAGAGAAACTTGCAGCCGA+GGG | + | chr6.2:75053742-75053761 | MS.gene27413:CDS | 45.0% | |
| TTCGGTTCAACGAACACCAA+GGG | + | chr6.2:75053480-75053499 | MS.gene27413:CDS | 45.0% | |
| TTTCGACTTCCAATCAGAGG+CGG | - | chr6.2:75053085-75053104 | None:intergenic | 45.0% | |
| ! | CTATAACCTGGAGGGTTAGT+AGG | - | chr6.2:75053250-75053269 | None:intergenic | 45.0% |
| AAGGCAAAGAAGCCGAAGAG+AGG | + | chr6.2:75053427-75053446 | MS.gene27413:CDS | 50.0% | |
| ACAACTGATGCCATCGATGC+CGG | + | chr6.2:75053054-75053073 | MS.gene27413:CDS | 50.0% | |
| CCGCGTCGTTTAGTACTCAT+AGG | - | chr6.2:75053673-75053692 | None:intergenic | 50.0% | |
| CTCTTCGGCTTCTTTGCCTT+AGG | - | chr6.2:75053427-75053446 | None:intergenic | 50.0% | |
| CTTCGGTTCAACGAACACCA+AGG | + | chr6.2:75053479-75053498 | MS.gene27413:CDS | 50.0% | |
| GATTGGAAGTCGAAATGCCG+CGG | + | chr6.2:75053090-75053109 | MS.gene27413:CDS | 50.0% | |
| GCGGTTATGTCGGGAACTAA+CGG | + | chr6.2:75053109-75053128 | MS.gene27413:CDS | 50.0% | |
| GGAACTGGTAAGAAGAGGCA+AGG | + | chr6.2:75053382-75053401 | MS.gene27413:CDS | 50.0% | |
| GTCCCAGTGCAAGAACAAAC+AGG | - | chr6.2:75053571-75053590 | None:intergenic | 50.0% | |
| GTCGAGAAGGTGAATGGAAC+TGG | + | chr6.2:75053367-75053386 | MS.gene27413:CDS | 50.0% | |
| GTTAGTTCCCGACATAACCG+CGG | - | chr6.2:75053110-75053129 | None:intergenic | 50.0% | |
| TAAGAAGAGGCAAGGACCGA+AGG | + | chr6.2:75053390-75053409 | MS.gene27413:CDS | 50.0% | |
| TCGAAATGCCGCGGTTATGT+CGG | + | chr6.2:75053099-75053118 | MS.gene27413:CDS | 50.0% | |
| TTAGGAGACTTCGGCACCTT+CGG | - | chr6.2:75053409-75053428 | None:intergenic | 50.0% | |
| !! | CTTGGTGTTCGTTGAACCGA+AGG | - | chr6.2:75053481-75053500 | None:intergenic | 50.0% |
| ACCACAGGTGCTTCCTCCAT+TGG | - | chr6.2:75053349-75053368 | None:intergenic | 55.0% | |
| CCATTCACCTTCTCGACCAC+AGG | - | chr6.2:75053364-75053383 | None:intergenic | 55.0% | |
| CCTGTGGTCGAGAAGGTGAA+TGG | + | chr6.2:75053361-75053380 | MS.gene27413:CDS | 55.0% | |
| CGAAATGCCGCGGTTATGTC+GGG | + | chr6.2:75053100-75053119 | MS.gene27413:CDS | 55.0% | |
| GCAGTCTGCATGCTGCACAA+CGG | + | chr6.2:75053627-75053646 | MS.gene27413:CDS | 55.0% | |
| TGTTATAGATGGGGCTCGGG+TGG | + | chr6.2:75053601-75053620 | MS.gene27413:CDS | 55.0% | |
| ! | CCAATCAGAGGCGGCTTTTC+CGG | - | chr6.2:75053076-75053095 | None:intergenic | 55.0% |
| ! | GAGGCATCCCAATTTCCCGA+TGG | - | chr6.2:75053144-75053163 | None:intergenic | 55.0% |
| !! | GAAGGTGCCGAAGTCTCCTA+AGG | + | chr6.2:75053408-75053427 | MS.gene27413:CDS | 55.0% |
| ATAGATGGGGCTCGGGTGGA+TGG | + | chr6.2:75053605-75053624 | MS.gene27413:CDS | 60.0% | |
| CCGGAAAAGCCGCCTCTGAT+TGG | + | chr6.2:75053073-75053092 | MS.gene27413:CDS | 60.0% | |
| GGCACACGAGGTCCTCTCTT+CGG | - | chr6.2:75053442-75053461 | None:intergenic | 60.0% | |
| TTCTCGTCCTTCGGCACACG+AGG | - | chr6.2:75053454-75053473 | None:intergenic | 60.0% | |
| ! | CGACGCGGTGCTAGAATAGC+CGG | + | chr6.2:75053685-75053704 | MS.gene27413:CDS | 60.0% |
| ! | GCGGTGCTAGAATAGCCGGA+AGG | + | chr6.2:75053689-75053708 | MS.gene27413:CDS | 60.0% |
| !! | GCCAATGGAGGAAGCACCTG+TGG | + | chr6.2:75053345-75053364 | MS.gene27413:CDS | 60.0% |
| !! | GGAAGCACCTGTGGTCGAGA+AGG | + | chr6.2:75053354-75053373 | MS.gene27413:CDS | 60.0% |
| GAGAGGACCTCGTGTGCCGA+AGG | + | chr6.2:75053444-75053463 | MS.gene27413:CDS | 65.0% | |
| !! | GGCGGCTTTTCCGGCATCGA+TGG | - | chr6.2:75053067-75053086 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.2 | gene | 75052974 | 75053843 | 75052974 | ID=MS.gene27413 |
| chr6.2 | mRNA | 75052974 | 75053843 | 75052974 | ID=MS.gene27413.t1;Parent=MS.gene27413 |
| chr6.2 | exon | 75052974 | 75053843 | 75052974 | ID=MS.gene27413.t1.exon1;Parent=MS.gene27413.t1 |
| chr6.2 | CDS | 75052974 | 75053843 | 75052974 | ID=cds.MS.gene27413.t1;Parent=MS.gene27413.t1 |
| Gene Sequence |
| Protein sequence |
