AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene27860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene27860.t1 MTR_8g087770 96.148 675 25 1 1 675 1 674 0.0 1319
MS.gene27860.t1 MTR_8g087750 81.994 672 111 5 6 672 11 677 0.0 1108
MS.gene27860.t1 MTR_8g087763 76.991 226 51 1 374 599 4 228 1.82e-124 373
MS.gene27860.t1 MTR_4g093750 37.846 325 180 9 67 376 35 352 2.87e-42 164
MS.gene27860.t1 MTR_4g093750 39.726 292 154 9 67 343 35 319 1.60e-41 162
MS.gene27860.t1 MTR_2g009690 36.624 314 187 6 63 366 40 351 2.00e-40 159
MS.gene27860.t1 MTR_1g032550 35.336 283 163 7 69 337 35 311 2.99e-33 135
MS.gene27860.t1 MTR_8g105580 35.461 282 163 6 69 337 35 310 1.53e-32 133
MS.gene27860.t1 MTR_8g105580 35.461 282 163 6 69 337 35 310 1.53e-32 133
MS.gene27860.t1 MTR_5g009150 42.473 186 105 2 69 252 35 220 8.01e-32 131
MS.gene27860.t1 MTR_7g451010 35.274 292 165 8 69 346 40 321 2.37e-31 130
MS.gene27860.t1 MTR_4g085860 75.641 78 18 1 206 282 2 79 7.47e-31 115
MS.gene27860.t1 MTR_8g099550 42.105 190 100 3 69 252 34 219 8.76e-31 128
MS.gene27860.t1 MTR_8g027675 41.709 199 105 5 69 264 34 224 1.29e-30 127
MS.gene27860.t1 MTR_8g009510 34.494 316 183 9 69 369 40 346 1.48e-30 127
MS.gene27860.t1 MTR_4g098920 34.483 319 179 10 69 369 34 340 2.07e-30 127
MS.gene27860.t1 MTR_6g045107 74.359 78 19 1 206 282 2 79 7.25e-29 110
MS.gene27860.t1 MTR_8g463270 30.303 231 142 7 54 269 27 253 1.73e-16 84.0
MS.gene27860.t1 MTR_8g009510 30.488 246 151 6 136 369 2 239 6.74e-16 81.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene27860.t1 AT1G60500 55.655 672 286 4 3 668 2 667 0.0 763
MS.gene27860.t1 AT1G60530 71.379 290 75 1 18 307 19 300 2.80e-142 417
MS.gene27860.t1 AT4G33650 30.023 443 266 11 35 452 29 452 1.12e-39 156
MS.gene27860.t1 AT4G33650 30.023 443 266 11 35 452 29 452 1.21e-39 156
MS.gene27860.t1 AT2G14120 33.234 337 207 6 25 346 1 334 1.47e-38 152
MS.gene27860.t1 AT2G14120 33.234 337 207 6 25 346 1 334 1.75e-38 153
MS.gene27860.t1 AT2G14120 33.234 337 207 6 25 346 1 334 1.83e-38 152
MS.gene27860.t1 AT2G14120 33.234 337 207 6 25 346 1 334 1.91e-38 153
MS.gene27860.t1 AT1G14830 34.892 278 171 5 69 337 35 311 3.98e-34 138
MS.gene27860.t1 AT3G60190 34.965 286 174 6 69 344 40 323 1.03e-31 131
MS.gene27860.t1 AT5G42080 33.762 311 192 7 69 369 34 340 1.85e-31 128
MS.gene27860.t1 AT5G42080 33.762 311 192 7 69 369 34 340 3.08e-31 129
MS.gene27860.t1 AT5G42080 33.762 311 192 7 69 369 34 340 3.94e-31 129
MS.gene27860.t1 AT5G42080 33.762 311 192 7 69 369 34 340 3.94e-31 129
MS.gene27860.t1 AT2G44590 32.986 288 175 7 69 345 35 315 7.82e-31 128
MS.gene27860.t1 AT3G61760 41.176 204 110 5 69 268 34 231 6.12e-30 124
MS.gene27860.t1 AT3G61760 41.176 204 110 5 69 268 34 231 7.49e-30 125
MS.gene27860.t1 AT3G61760 41.176 204 110 5 69 268 34 231 9.40e-30 125
MS.gene27860.t1 AT2G44590 29.861 288 167 8 69 345 35 298 2.18e-21 99.4
MS.gene27860.t1 AT2G44590 29.861 288 167 8 69 345 35 298 2.31e-21 99.0
MS.gene27860.t1 AT1G53140 27.731 238 156 7 44 269 36 269 5.87e-15 79.3

Find 128 sgRNAs with CRISPR-Local

Find 133 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGGAGTCTCCATCTATTTC+TGG 0.166668 4.1:+12997577 MS.gene27860:CDS
CATTGCTGGTATTCCTGTTT+TGG 0.205580 4.1:+12996580 MS.gene27860:CDS
GCAGTTCTTGGCATGAAATT+TGG 0.208693 4.1:-12996977 None:intergenic
TTAGTACTTGTGAGTCTATT+AGG 0.242558 4.1:+12996330 MS.gene27860:CDS
ATCAAGTTTGTTTGCCTTTG+TGG 0.244719 4.1:-12995694 None:intergenic
CTTGAGGAAGCTAAGTTAAT+TGG 0.255531 4.1:+12996950 MS.gene27860:CDS
TGACAATGTGTGGAGCTATT+TGG 0.298324 4.1:+12997060 MS.gene27860:CDS
TCTGAGAAAGATTCTTCTAA+TGG 0.298751 4.1:+12996784 MS.gene27860:CDS
AATGTTAGAAAAGCAGTTCT+TGG 0.299019 4.1:-12996989 None:intergenic
ATCTGATCATAAATGTTATC+AGG 0.304162 4.1:-12996233 None:intergenic
TAACATTTATGATCAGATTA+AGG 0.317964 4.1:+12996238 MS.gene27860:CDS
CTTCCAACCATTGTTGTTGT+TGG 0.322456 4.1:+12995876 MS.gene27860:CDS
TGATGATGTTAACATTGGTT+TGG 0.323376 4.1:+12996448 MS.gene27860:CDS
GCCTGCCAATTTGACTTCAT+TGG 0.333846 4.1:+12996712 MS.gene27860:CDS
TCCACAGCCAGAGCTTGTTT+TGG 0.338480 4.1:+12996016 MS.gene27860:CDS
TTCATTTCTTGCTTCTTCAT+AGG 0.344245 4.1:-12996507 None:intergenic
AGAGACTGTGGCCAACATTA+TGG 0.346194 4.1:+12997648 MS.gene27860:CDS
CTTACTATGGTTGATCTTCC+AGG 0.352429 4.1:+12996182 MS.gene27860:CDS
ATCTGCCAATGAAGTCAAAT+TGG 0.360580 4.1:-12996717 None:intergenic
CAAGGGTACCTTTGGTTATG+AGG 0.366182 4.1:+12995976 MS.gene27860:CDS
CAATGCATTTGTTTATCATC+AGG 0.370755 4.1:-12996824 None:intergenic
TGCAAACTATTACCAGTTGC+AGG 0.374084 4.1:+12997117 MS.gene27860:CDS
TGGAGTTCCTGATCTTACTA+TGG 0.379945 4.1:+12996169 MS.gene27860:CDS
ACTTTCTCCAACAAACCTTC+AGG 0.384947 4.1:-12996419 None:intergenic
CTGAGAAAGATTCTTCTAAT+GGG 0.390787 4.1:+12996785 MS.gene27860:CDS
GATGATGTTAACATTGGTTT+GGG 0.391771 4.1:+12996449 MS.gene27860:CDS
TTCAAAATAATACTCTCTTC+AGG 0.392099 4.1:-12996284 None:intergenic
GCTCTGGCTGTGGAAGTAAA+TGG 0.394731 4.1:-12996007 None:intergenic
TTCCATTAGGAAATCCTTTG+TGG 0.394982 4.1:-12996915 None:intergenic
ATAACTCGTGTTCCTGTTCA+TGG 0.396246 4.1:+12996206 MS.gene27860:CDS
TTGATCTTCTTAATTATCTC+AGG 0.396848 4.1:-12996650 None:intergenic
TCACAGATAGTTGATAAAAC+TGG 0.398319 4.1:+12996356 MS.gene27860:CDS
AGGCAAGATTAATTGCCTAT+TGG 0.399341 4.1:+12997425 MS.gene27860:CDS
TCCGATCAATGTGTTGAATC+AGG 0.406853 4.1:+12997390 MS.gene27860:CDS
AAGATTGACAAATCCATTGC+TGG 0.411898 4.1:+12996566 MS.gene27860:CDS
GAATCAGGCCTTTGACTTGA+AGG 0.413968 4.1:+12997405 MS.gene27860:CDS
ATGGACAGGATTGGAGTCTA+TGG 0.415221 4.1:+12997667 MS.gene27860:CDS
TTGATGCTCTTGAAAATCTA+AGG 0.416842 4.1:+12995823 MS.gene27860:CDS
TTGCAATCCGGAGTACTTGC+AGG 0.423704 4.1:+12997243 MS.gene27860:CDS
AATTTGTACAAGGGTACCTT+TGG 0.424069 4.1:+12995968 MS.gene27860:CDS
TCAAGTACTGTGAAGCTTGA+AGG 0.424080 4.1:+12997331 MS.gene27860:CDS
TGTCTCTTACCAGAAATAGA+TGG 0.425419 4.1:-12997586 None:intergenic
GGACTACGATCTCTTCCATT+AGG 0.434291 4.1:-12996928 None:intergenic
TGTGATGCAAGCTGTTGATA+TGG 0.436114 4.1:+12997201 MS.gene27860:CDS
TAAATCACCTGAAGGTTTGT+TGG 0.440077 4.1:+12996412 MS.gene27860:CDS
TTTGGAAAGGGTTGTTATCT+CGG 0.442091 4.1:+12997078 MS.gene27860:CDS
ACAGCCACTGAGGAGCTTGC+TGG 0.443000 4.1:+12996095 MS.gene27860:CDS
CCTCAGCACAATCTTCCAAT+AGG 0.443004 4.1:-12997440 None:intergenic
TGGGGTGTTGGAAATCCCTT+TGG 0.443439 4.1:-12996123 None:intergenic
TTCCACAAAGGATTTCCTAA+TGG 0.449900 4.1:+12996913 MS.gene27860:CDS
ACAAGCTTCTGAGCCAAAAC+AGG 0.453897 4.1:-12996593 None:intergenic
ACATTGTCAACAAAATTAGT+TGG 0.454264 4.1:-12997046 None:intergenic
GCATTGTACTGCTCGGTTAG+TGG 0.455271 4.1:+12996841 MS.gene27860:CDS
TCATTATAAGAAGATACAAT+TGG 0.458646 4.1:-12995783 None:intergenic
TACGAGTAGCAACCTGCAAC+TGG 0.461514 4.1:-12997129 None:intergenic
ACAATTGGTGCAACAGATAG+AGG 0.467988 4.1:-12995768 None:intergenic
TCTTTACTATCAAAGTCAGT+GGG 0.470875 4.1:-12996142 None:intergenic
TGATACCAGCTAATGATTCA+AGG 0.474056 4.1:-12995926 None:intergenic
GAGCTTGCTGGCACTGCCAA+AGG 0.478600 4.1:+12996107 MS.gene27860:CDS
GTTGTTGGAGATCAATCATC+TGG 0.485196 4.1:+12995891 MS.gene27860:CDS
TTATACTCCAAAACAAGCTC+TGG 0.492061 4.1:-12996023 None:intergenic
TATCAAAGTCAGTGGGGTGT+TGG 0.492352 4.1:-12996135 None:intergenic
TTATCAGGTTGACCATGAAC+AGG 0.495576 4.1:-12996218 None:intergenic
GCGTCTCAACATTGCTAAAG+AGG 0.501157 4.1:+12995845 MS.gene27860:CDS
AGCTTGCATCACATGTTGAA+TGG 0.501675 4.1:-12997191 None:intergenic
GCCAATGAAGTCAAATTGGC+AGG 0.504122 4.1:-12996713 None:intergenic
CACGGATTACACTTGCAATC+CGG 0.511102 4.1:+12997231 MS.gene27860:CDS
TTTGTGTGAGAAATCGCATT+GGG 0.515555 4.1:+12996477 MS.gene27860:CDS
GTAAGAGACAAAGTTTAAGC+AGG 0.516534 4.1:+12997599 MS.gene27860:CDS
AATGCATTTGTTTATCATCA+GGG 0.517273 4.1:-12996823 None:intergenic
TCCAATCCTGTCCATAATGT+TGG 0.522411 4.1:-12997659 None:intergenic
AGATCAACCATAGTAAGATC+AGG 0.522883 4.1:-12996176 None:intergenic
AGTGTCCTTGAATCATTAGC+TGG 0.523168 4.1:+12995921 MS.gene27860:CDS
TCCAAAACAAGCTCTGGCTG+TGG 0.524796 4.1:-12996017 None:intergenic
GGTGCAACAGATAGAGGTTG+AGG 0.525331 4.1:-12995762 None:intergenic
TAATCTTGCCTTCAAGTCAA+AGG 0.534214 4.1:-12997413 None:intergenic
GCCAACATTATGGACAGGAT+TGG 0.534644 4.1:+12997658 MS.gene27860:CDS
GCCTGATTCAACACATTGAT+CGG 0.536471 4.1:-12997391 None:intergenic
AAGGAGATTTGTAATGAACT+TGG 0.538785 4.1:+12997532 MS.gene27860:CDS
ATCAGCTTGCCACGTGGACA+AGG 0.540401 4.1:+12995945 MS.gene27860:CDS
TCAGATTAAGGATATTATCA+TGG 0.543580 4.1:+12996250 MS.gene27860:CDS
TTATATTCCTGCAAGTACTC+CGG 0.543933 4.1:-12997250 None:intergenic
AGCTTGCTGGCACTGCCAAA+GGG 0.547647 4.1:+12996108 MS.gene27860:CDS
ATGTGTGGAGCTATTTGGAA+AGG 0.549884 4.1:+12997065 MS.gene27860:CDS
AACAAATGCATTGTACTGCT+CGG 0.550416 4.1:+12996834 MS.gene27860:CDS
TCTCCAACAACAACAATGGT+TGG 0.551269 4.1:-12995879 None:intergenic
GAGATTTGTAATGAACTTGG+TGG 0.560761 4.1:+12997535 MS.gene27860:CDS
ACTTTGATAGTAAAGAAGAA+TGG 0.569006 4.1:+12996149 MS.gene27860:CDS
TAGTTGATAAAACTGGTTTG+AGG 0.569831 4.1:+12996363 MS.gene27860:CDS
GTACTGCTCGGTTAGTGGAG+AGG 0.571484 4.1:+12996846 MS.gene27860:CDS
CTGTGGCCAACATTATGGAC+AGG 0.573065 4.1:+12997653 MS.gene27860:CDS
GACATTAGCTGTTGTAACAA+AGG 0.576294 4.1:+12996385 MS.gene27860:CDS
ATTACTTCAGAGAAAAGTGA+AGG 0.577066 4.1:+12997009 MS.gene27860:CDS
AGTGCCAGCAAGCTCCTCAG+TGG 0.578957 4.1:-12996099 None:intergenic
TTCTTTACTATCAAAGTCAG+TGG 0.579933 4.1:-12996143 None:intergenic
CGTCTCAACATTGCTAAAGA+GGG 0.585949 4.1:+12995846 MS.gene27860:CDS
GTGGACAAGGAATTTGTACA+AGG 0.592993 4.1:+12995958 MS.gene27860:CDS
CAGTGTTGAGAGGCTGCTTG+AGG 0.594487 4.1:+12997558 MS.gene27860:CDS
GGAAGAGATCGTAGTCCTTG+AGG 0.596070 4.1:+12996934 MS.gene27860:CDS
ATTGGAAGATTGTGCTGAGG+AGG 0.597029 4.1:+12997443 MS.gene27860:CDS
CAAACAACTTTCAACTGATG+AGG 0.601066 4.1:+12996049 MS.gene27860:CDS
ACTGTGAAGCTTGAAGGAGT+TGG 0.602736 4.1:+12997337 MS.gene27860:CDS
TGTGAGAAATCGCATTGGGG+AGG 0.608396 4.1:+12996481 MS.gene27860:CDS
GGTTGCTACTCGTAGAGCTG+TGG 0.612719 4.1:+12997138 MS.gene27860:CDS
ACAGGAACACGAGTTATACC+TGG 0.615115 4.1:-12996200 None:intergenic
TGTGTGGAGCTATTTGGAAA+GGG 0.616400 4.1:+12997066 MS.gene27860:CDS
CAAAACAGGAATACCAGCAA+TGG 0.616931 4.1:-12996579 None:intergenic
CAATTAACTTAGCTTCCTCA+AGG 0.618556 4.1:-12996949 None:intergenic
GATTAACAATGATCTGCAGA+AGG 0.625104 4.1:+12997513 MS.gene27860:CDS
ACTGCTGATGATGTTAACAT+TGG 0.625783 4.1:+12996443 MS.gene27860:CDS
AAGGCTGATAAATCACCTGA+AGG 0.627415 4.1:+12996404 MS.gene27860:CDS
TTGATCTCCAACAACAACAA+TGG 0.648908 4.1:-12995883 None:intergenic
TAGAGAAAGCAAAGAGACTG+TGG 0.654791 4.1:+12997636 MS.gene27860:CDS
GTACAAATTCCTTGTCCACG+TGG 0.660130 4.1:-12995954 None:intergenic
TTACTTCAGAGAAAAGTGAA+GGG 0.662697 4.1:+12997010 MS.gene27860:CDS
TGTTGATATGGAGAAGCACA+CGG 0.665028 4.1:+12997213 MS.gene27860:CDS
AACTTGGTGGCAGTGTTGAG+AGG 0.665158 4.1:+12997548 MS.gene27860:CDS
GTTTGTGTGAGAAATCGCAT+TGG 0.677044 4.1:+12996476 MS.gene27860:CDS
TGCTATAAATACAGCCACTG+AGG 0.694192 4.1:+12996085 MS.gene27860:CDS
CTTTACTATCAAAGTCAGTG+GGG 0.697240 4.1:-12996141 None:intergenic
TGCTGAAAGTGATTCCACAA+AGG 0.697479 4.1:+12996901 MS.gene27860:CDS
GCTGGTATCAGCTTGCCACG+TGG 0.699523 4.1:+12995939 MS.gene27860:CDS
GTTGATCATCAACATCAACA+TGG 0.706155 4.1:-12995740 None:intergenic
TGGAAACAAGAGTTCCACAA+AGG 0.707464 4.1:+12995680 MS.gene27860:CDS
CCTATTGGAAGATTGTGCTG+AGG 0.716472 4.1:+12997440 MS.gene27860:CDS
TGGACAAGGAATTTGTACAA+GGG 0.728664 4.1:+12995959 MS.gene27860:CDS
TTGTGTGAGAAATCGCATTG+GGG 0.740526 4.1:+12996478 MS.gene27860:CDS
ACTGGTAATAGTTTGCAGAG+TGG 0.741343 4.1:-12997111 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAACATTTATGATCAGATTA+AGG + chr4.1:12996238-12996257 MS.gene27860:CDS 20.0%
!! TCATTATAAGAAGATACAAT+TGG - chr4.1:12995786-12995805 None:intergenic 20.0%
!!! AGCATTTTTGAAAAAAGTTT+TGG + chr4.1:12997294-12997313 MS.gene27860:CDS 20.0%
! AATGCATTTGTTTATCATCA+GGG - chr4.1:12996826-12996845 None:intergenic 25.0%
! ACATTGTCAACAAAATTAGT+TGG - chr4.1:12997049-12997068 None:intergenic 25.0%
! ATCTGATCATAAATGTTATC+AGG - chr4.1:12996236-12996255 None:intergenic 25.0%
! TCAGATTAAGGATATTATCA+TGG + chr4.1:12996250-12996269 MS.gene27860:CDS 25.0%
! TTCAAAATAATACTCTCTTC+AGG - chr4.1:12996287-12996306 None:intergenic 25.0%
! TTGATCTTCTTAATTATCTC+AGG - chr4.1:12996653-12996672 None:intergenic 25.0%
!! ACTTTGATAGTAAAGAAGAA+TGG + chr4.1:12996149-12996168 MS.gene27860:CDS 25.0%
AAGGAGATTTGTAATGAACT+TGG + chr4.1:12997532-12997551 MS.gene27860:CDS 30.0%
AATGTTAGAAAAGCAGTTCT+TGG - chr4.1:12996992-12997011 None:intergenic 30.0%
ATTACTTCAGAGAAAAGTGA+AGG + chr4.1:12997009-12997028 MS.gene27860:CDS 30.0%
CAATGCATTTGTTTATCATC+AGG - chr4.1:12996827-12996846 None:intergenic 30.0%
CTGAGAAAGATTCTTCTAAT+GGG + chr4.1:12996785-12996804 MS.gene27860:CDS 30.0%
TCTGAGAAAGATTCTTCTAA+TGG + chr4.1:12996784-12996803 MS.gene27860:CDS 30.0%
TCTTTACTATCAAAGTCAGT+GGG - chr4.1:12996145-12996164 None:intergenic 30.0%
TTACTTCAGAGAAAAGTGAA+GGG + chr4.1:12997010-12997029 MS.gene27860:CDS 30.0%
TTAGTACTTGTGAGTCTATT+AGG + chr4.1:12996330-12996349 MS.gene27860:CDS 30.0%
TTCATTTCTTGCTTCTTCAT+AGG - chr4.1:12996510-12996529 None:intergenic 30.0%
TTCTTTACTATCAAAGTCAG+TGG - chr4.1:12996146-12996165 None:intergenic 30.0%
TTGATGCTCTTGAAAATCTA+AGG + chr4.1:12995823-12995842 MS.gene27860:CDS 30.0%
! CTAATTTTGTTGACAATGTG+TGG + chr4.1:12997050-12997069 MS.gene27860:CDS 30.0%
! TGATGATGTTAACATTGGTT+TGG + chr4.1:12996448-12996467 MS.gene27860:CDS 30.0%
!! GATGATGTTAACATTGGTTT+GGG + chr4.1:12996449-12996468 MS.gene27860:CDS 30.0%
!! TAGTTGATAAAACTGGTTTG+AGG + chr4.1:12996363-12996382 MS.gene27860:CDS 30.0%
!! TCACAGATAGTTGATAAAAC+TGG + chr4.1:12996356-12996375 MS.gene27860:CDS 30.0%
AACAAATGCATTGTACTGCT+CGG + chr4.1:12996834-12996853 MS.gene27860:CDS 35.0%
AAGATTGACAAATCCATTGC+TGG + chr4.1:12996566-12996585 MS.gene27860:CDS 35.0%
AGATCAACCATAGTAAGATC+AGG - chr4.1:12996179-12996198 None:intergenic 35.0%
AGGCAAGATTAATTGCCTAT+TGG + chr4.1:12997425-12997444 MS.gene27860:CDS 35.0%
ATCTGCCAATGAAGTCAAAT+TGG - chr4.1:12996720-12996739 None:intergenic 35.0%
CAAACAACTTTCAACTGATG+AGG + chr4.1:12996049-12996068 MS.gene27860:CDS 35.0%
CAATTAACTTAGCTTCCTCA+AGG - chr4.1:12996952-12996971 None:intergenic 35.0%
CTTGAGGAAGCTAAGTTAAT+TGG + chr4.1:12996950-12996969 MS.gene27860:CDS 35.0%
CTTTACTATCAAAGTCAGTG+GGG - chr4.1:12996144-12996163 None:intergenic 35.0%
GACATTAGCTGTTGTAACAA+AGG + chr4.1:12996385-12996404 MS.gene27860:CDS 35.0%
GAGATTTGTAATGAACTTGG+TGG + chr4.1:12997535-12997554 MS.gene27860:CDS 35.0%
GATTAACAATGATCTGCAGA+AGG + chr4.1:12997513-12997532 MS.gene27860:CDS 35.0%
GTAAGAGACAAAGTTTAAGC+AGG + chr4.1:12997599-12997618 MS.gene27860:CDS 35.0%
GTTGATCATCAACATCAACA+TGG - chr4.1:12995743-12995762 None:intergenic 35.0%
TAAATCACCTGAAGGTTTGT+TGG + chr4.1:12996412-12996431 MS.gene27860:CDS 35.0%
TAATCTTGCCTTCAAGTCAA+AGG - chr4.1:12997416-12997435 None:intergenic 35.0%
TGATACCAGCTAATGATTCA+AGG - chr4.1:12995929-12995948 None:intergenic 35.0%
TGGACAAGGAATTTGTACAA+GGG + chr4.1:12995959-12995978 MS.gene27860:CDS 35.0%
TGTCTCTTACCAGAAATAGA+TGG - chr4.1:12997589-12997608 None:intergenic 35.0%
TTATACTCCAAAACAAGCTC+TGG - chr4.1:12996026-12996045 None:intergenic 35.0%
TTATATTCCTGCAAGTACTC+CGG - chr4.1:12997253-12997272 None:intergenic 35.0%
TTCCACAAAGGATTTCCTAA+TGG + chr4.1:12996913-12996932 MS.gene27860:CDS 35.0%
TTCCATTAGGAAATCCTTTG+TGG - chr4.1:12996918-12996937 None:intergenic 35.0%
TTGATCTCCAACAACAACAA+TGG - chr4.1:12995886-12995905 None:intergenic 35.0%
TTTGGAAAGGGTTGTTATCT+CGG + chr4.1:12997078-12997097 MS.gene27860:CDS 35.0%
TTTGTGTGAGAAATCGCATT+GGG + chr4.1:12996477-12996496 MS.gene27860:CDS 35.0%
! ACTGCTGATGATGTTAACAT+TGG + chr4.1:12996443-12996462 MS.gene27860:CDS 35.0%
! ATCAAGTTTGTTTGCCTTTG+TGG - chr4.1:12995697-12995716 None:intergenic 35.0%
!! AATTTGTACAAGGGTACCTT+TGG + chr4.1:12995968-12995987 MS.gene27860:CDS 35.0%
!!! GAGCTTGTTTTGGAGTATAA+TGG + chr4.1:12996026-12996045 MS.gene27860:CDS 35.0%
AAGGCTGATAAATCACCTGA+AGG + chr4.1:12996404-12996423 MS.gene27860:CDS 40.0%
ACAATTGGTGCAACAGATAG+AGG - chr4.1:12995771-12995790 None:intergenic 40.0%
ACTTTCTCCAACAAACCTTC+AGG - chr4.1:12996422-12996441 None:intergenic 40.0%
AGCTTGCATCACATGTTGAA+TGG - chr4.1:12997194-12997213 None:intergenic 40.0%
AGTGTCCTTGAATCATTAGC+TGG + chr4.1:12995921-12995940 MS.gene27860:CDS 40.0%
ATAACTCGTGTTCCTGTTCA+TGG + chr4.1:12996206-12996225 MS.gene27860:CDS 40.0%
ATGTGTGGAGCTATTTGGAA+AGG + chr4.1:12997065-12997084 MS.gene27860:CDS 40.0%
CAAAACAGGAATACCAGCAA+TGG - chr4.1:12996582-12996601 None:intergenic 40.0%
CGTCTCAACATTGCTAAAGA+GGG + chr4.1:12995846-12995865 MS.gene27860:CDS 40.0%
CTTACTATGGTTGATCTTCC+AGG + chr4.1:12996182-12996201 MS.gene27860:CDS 40.0%
GCAGTTCTTGGCATGAAATT+TGG - chr4.1:12996980-12996999 None:intergenic 40.0%
GCCTGATTCAACACATTGAT+CGG - chr4.1:12997394-12997413 None:intergenic 40.0%
GTGGACAAGGAATTTGTACA+AGG + chr4.1:12995958-12995977 MS.gene27860:CDS 40.0%
GTTGTTGGAGATCAATCATC+TGG + chr4.1:12995891-12995910 MS.gene27860:CDS 40.0%
GTTTGTGTGAGAAATCGCAT+TGG + chr4.1:12996476-12996495 MS.gene27860:CDS 40.0%
TAGAGAAAGCAAAGAGACTG+TGG + chr4.1:12997636-12997655 MS.gene27860:CDS 40.0%
TCCAATCCTGTCCATAATGT+TGG - chr4.1:12997662-12997681 None:intergenic 40.0%
TCCGATCAATGTGTTGAATC+AGG + chr4.1:12997390-12997409 MS.gene27860:CDS 40.0%
TCTCCAACAACAACAATGGT+TGG - chr4.1:12995882-12995901 None:intergenic 40.0%
TGACAATGTGTGGAGCTATT+TGG + chr4.1:12997060-12997079 MS.gene27860:CDS 40.0%
TGCAAACTATTACCAGTTGC+AGG + chr4.1:12997117-12997136 MS.gene27860:CDS 40.0%
TGCTATAAATACAGCCACTG+AGG + chr4.1:12996085-12996104 MS.gene27860:CDS 40.0%
TGCTGAAAGTGATTCCACAA+AGG + chr4.1:12996901-12996920 MS.gene27860:CDS 40.0%
TGGAAACAAGAGTTCCACAA+AGG + chr4.1:12995680-12995699 MS.gene27860:CDS 40.0%
TGGAGTTCCTGATCTTACTA+TGG + chr4.1:12996169-12996188 MS.gene27860:CDS 40.0%
TGTGATGCAAGCTGTTGATA+TGG + chr4.1:12997201-12997220 MS.gene27860:CDS 40.0%
TGTGTGGAGCTATTTGGAAA+GGG + chr4.1:12997066-12997085 MS.gene27860:CDS 40.0%
TTGTGTGAGAAATCGCATTG+GGG + chr4.1:12996478-12996497 MS.gene27860:CDS 40.0%
! ACTGGTAATAGTTTGCAGAG+TGG - chr4.1:12997114-12997133 None:intergenic 40.0%
! CATTGCTGGTATTCCTGTTT+TGG + chr4.1:12996580-12996599 MS.gene27860:CDS 40.0%
! CTTCCAACCATTGTTGTTGT+TGG + chr4.1:12995876-12995895 MS.gene27860:CDS 40.0%
! TCAAGTACTGTGAAGCTTGA+AGG + chr4.1:12997331-12997350 MS.gene27860:CDS 40.0%
! TGTTGATATGGAGAAGCACA+CGG + chr4.1:12997213-12997232 MS.gene27860:CDS 40.0%
! TTTTGCAGCCTCATAACCAA+AGG - chr4.1:12995987-12996006 None:intergenic 40.0%
!! TTATCAGGTTGACCATGAAC+AGG - chr4.1:12996221-12996240 None:intergenic 40.0%
!!! TTTTCAAGAGCATCAAGCAC+TGG - chr4.1:12995819-12995838 None:intergenic 40.0%
ACAAGCTTCTGAGCCAAAAC+AGG - chr4.1:12996596-12996615 None:intergenic 45.0%
ACAGGAACACGAGTTATACC+TGG - chr4.1:12996203-12996222 None:intergenic 45.0%
ACTGTGAAGCTTGAAGGAGT+TGG + chr4.1:12997337-12997356 MS.gene27860:CDS 45.0%
AGAGACTGTGGCCAACATTA+TGG + chr4.1:12997648-12997667 MS.gene27860:CDS 45.0%
ATGGACAGGATTGGAGTCTA+TGG + chr4.1:12997667-12997686 MS.gene27860:CDS 45.0%
ATTGGAAGATTGTGCTGAGG+AGG + chr4.1:12997443-12997462 MS.gene27860:CDS 45.0%
CCTATTGGAAGATTGTGCTG+AGG + chr4.1:12997440-12997459 MS.gene27860:CDS 45.0%
CCTCAGCACAATCTTCCAAT+AGG - chr4.1:12997443-12997462 None:intergenic 45.0%
GAGGAGTCTCCATCTATTTC+TGG + chr4.1:12997577-12997596 MS.gene27860:CDS 45.0%
GCCAACATTATGGACAGGAT+TGG + chr4.1:12997658-12997677 MS.gene27860:CDS 45.0%
GCCAATGAAGTCAAATTGGC+AGG - chr4.1:12996716-12996735 None:intergenic 45.0%
GCGTCTCAACATTGCTAAAG+AGG + chr4.1:12995845-12995864 MS.gene27860:CDS 45.0%
GGACTACGATCTCTTCCATT+AGG - chr4.1:12996931-12996950 None:intergenic 45.0%
GTACAAATTCCTTGTCCACG+TGG - chr4.1:12995957-12995976 None:intergenic 45.0%
TATCAAAGTCAGTGGGGTGT+TGG - chr4.1:12996138-12996157 None:intergenic 45.0%
! CACGGATTACACTTGCAATC+CGG + chr4.1:12997231-12997250 MS.gene27860:CDS 45.0%
! GCCTGCCAATTTGACTTCAT+TGG + chr4.1:12996712-12996731 MS.gene27860:CDS 45.0%
!! CAAGGGTACCTTTGGTTATG+AGG + chr4.1:12995976-12995995 MS.gene27860:CDS 45.0%
!! GAATCAGGCCTTTGACTTGA+AGG + chr4.1:12997405-12997424 MS.gene27860:CDS 45.0%
CTGTGGCCAACATTATGGAC+AGG + chr4.1:12997653-12997672 MS.gene27860:CDS 50.0%
GCATTGTACTGCTCGGTTAG+TGG + chr4.1:12996841-12996860 MS.gene27860:CDS 50.0%
GCTCTGGCTGTGGAAGTAAA+TGG - chr4.1:12996010-12996029 None:intergenic 50.0%
GGAAGAGATCGTAGTCCTTG+AGG + chr4.1:12996934-12996953 MS.gene27860:CDS 50.0%
GGTGCAACAGATAGAGGTTG+AGG - chr4.1:12995765-12995784 None:intergenic 50.0%
TACGAGTAGCAACCTGCAAC+TGG - chr4.1:12997132-12997151 None:intergenic 50.0%
TGTGAGAAATCGCATTGGGG+AGG + chr4.1:12996481-12996500 MS.gene27860:CDS 50.0%
! AACTTGGTGGCAGTGTTGAG+AGG + chr4.1:12997548-12997567 MS.gene27860:CDS 50.0%
! TCCAAAACAAGCTCTGGCTG+TGG - chr4.1:12996020-12996039 None:intergenic 50.0%
! TTGCAATCCGGAGTACTTGC+AGG + chr4.1:12997243-12997262 MS.gene27860:CDS 50.0%
!! TCCACAGCCAGAGCTTGTTT+TGG + chr4.1:12996016-12996035 MS.gene27860:CDS 50.0%
!! TGGGGTGTTGGAAATCCCTT+TGG - chr4.1:12996126-12996145 None:intergenic 50.0%
ATCAGCTTGCCACGTGGACA+AGG + chr4.1:12995945-12995964 MS.gene27860:CDS 55.0%
GGTTGCTACTCGTAGAGCTG+TGG + chr4.1:12997138-12997157 MS.gene27860:CDS 55.0%
GTACTGCTCGGTTAGTGGAG+AGG + chr4.1:12996846-12996865 MS.gene27860:CDS 55.0%
! CAGTGTTGAGAGGCTGCTTG+AGG + chr4.1:12997558-12997577 MS.gene27860:CDS 55.0%
!! AGCTTGCTGGCACTGCCAAA+GGG + chr4.1:12996108-12996127 MS.gene27860:CDS 55.0%
ACAGCCACTGAGGAGCTTGC+TGG + chr4.1:12996095-12996114 MS.gene27860:CDS 60.0%
AGTGCCAGCAAGCTCCTCAG+TGG - chr4.1:12996102-12996121 None:intergenic 60.0%
GCTGGTATCAGCTTGCCACG+TGG + chr4.1:12995939-12995958 MS.gene27860:CDS 60.0%
!! GAGCTTGCTGGCACTGCCAA+AGG + chr4.1:12996107-12996126 MS.gene27860:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 12995672 12997699 12995672 ID=MS.gene27860
chr4.1 mRNA 12995672 12997699 12995672 ID=MS.gene27860.t1;Parent=MS.gene27860
chr4.1 exon 12995672 12997699 12995672 ID=MS.gene27860.t1.exon1;Parent=MS.gene27860.t1
chr4.1 CDS 12995672 12997699 12995672 ID=cds.MS.gene27860.t1;Parent=MS.gene27860.t1
Gene Sequence

>MS.gene27860

ATGACAATTGGAAACAAGAGTTCCACAAAGGCAAACAAACTTGATGAATCATCATCACTTGCATTAGTCCATGTTGATGTTGATGATCAACCTCAACCTCTATCTGTTGCACCAATTGTATCTTCTTATAATGAGAAGATACGTCCAGTGCTTGATGCTCTTGAAAATCTAAGGCGTCTCAACATTGCTAAAGAGGGAATTCAGCTTCCAACCATTGTTGTTGTTGGAGATCAATCATCTGGAAAGTCTAGTGTCCTTGAATCATTAGCTGGTATCAGCTTGCCACGTGGACAAGGAATTTGTACAAGGGTACCTTTGGTTATGAGGCTGCAAAACCATTTACTTCCACAGCCAGAGCTTGTTTTGGAGTATAATGGCAAACAACTTTCAACTGATGAGGAAAATGTATCTGATGCTATAAATACAGCCACTGAGGAGCTTGCTGGCACTGCCAAAGGGATTTCCAACACCCCACTGACTTTGATAGTAAAGAAGAATGGAGTTCCTGATCTTACTATGGTTGATCTTCCAGGTATAACTCGTGTTCCTGTTCATGGTCAACCTGATAACATTTATGATCAGATTAAGGATATTATCATGGAGTATATAACTCCTGAAGAGAGTATTATTTTGAATGTGCTCTCTGCTACTGTCGATTTTAGTACTTGTGAGTCTATTAGGATGTCACAGATAGTTGATAAAACTGGTTTGAGGACATTAGCTGTTGTAACAAAGGCTGATAAATCACCTGAAGGTTTGTTGGAGAAAGTAACTGCTGATGATGTTAACATTGGTTTGGGCTATGTTTGTGTGAGAAATCGCATTGGGGAGGAATCCTATGAAGAAGCAAGAAATGAAGAACAGAAGTTGTTTGAGTCTCACTCACTTCTTTCTAAGATTGACAAATCCATTGCTGGTATTCCTGTTTTGGCTCAGAAGCTTGTTAATGTGCAAGCTATGATTATTTCAAAAACTTTGCCTGAGATAATTAAGAAGATCAATGAGAAGCTTTATAATAGTGTACATGAGTTGAAGACTTTGCCTGCCAATTTGACTTCATTGGCAGATGCTATGTCTGCTTTTCTGCATATTGTTTCTCTGTCAAGAGATTCTCTGAGAAAGATTCTTCTAATGGGAGAATTTGAAGAATACCCTGATGATAAACAAATGCATTGTACTGCTCGGTTAGTGGAGAGGTTGAATTCATATGCAAGTGATCTTCAAAACTGTGCTGAAAGTGATTCCACAAAGGATTTCCTAATGGAAGAGATCGTAGTCCTTGAGGAAGCTAAGTTAATTGGTCTTCCAAATTTCATGCCAAGAACTGCTTTTCTAACATTACTTCAGAGAAAAGTGAAGGGCATTTCTCATATGCCAACTAATTTTGTTGACAATGTGTGGAGCTATTTGGAAAGGGTTGTTATCTCGGTCATGAATCGCCACTCTGCAAACTATTACCAGTTGCAGGTTGCTACTCGTAGAGCTGTGGAGCACGTTATTGCTAAGAAGAAGAGCAATTCCATTCAACATGTGATGCAAGCTGTTGATATGGAGAAGCACACGGATTACACTTGCAATCCGGAGTACTTGCAGGAATATAACGAGCTGATGTCTTATCAAGAAGCATTTTTGAAAAAAGTTTTGGATGATGATCGATGTTCAAGTACTGTGAAGCTTGAAGGAGTTGGTAACATTGAAGTTAATCATCTGATAGAGTATCCGATCAATGTGTTGAATCAGGCCTTTGACTTGAAGGCAAGATTAATTGCCTATTGGAAGATTGTGCTGAGGAGGCTCATTGATAGTATTGCTTTGCATTTGATGCTAAGCATCAATGAACTGATTAACAATGATCTGCAGAAGGAGATTTGTAATGAACTTGGTGGCAGTGTTGAGAGGCTGCTTGAGGAGTCTCCATCTATTTCTGGTAAGAGACAAAGTTTAAGCAGGAGTGTGAAAGTTCTTAGAGAAAGCAAAGAGACTGTGGCCAACATTATGGACAGGATTGGAGTCTATGGTAATAACTAG

Protein sequence

>MS.gene27860.t1

MTIGNKSSTKANKLDESSSLALVHVDVDDQPQPLSVAPIVSSYNEKIRPVLDALENLRRLNIAKEGIQLPTIVVVGDQSSGKSSVLESLAGISLPRGQGICTRVPLVMRLQNHLLPQPELVLEYNGKQLSTDEENVSDAINTATEELAGTAKGISNTPLTLIVKKNGVPDLTMVDLPGITRVPVHGQPDNIYDQIKDIIMEYITPEESIILNVLSATVDFSTCESIRMSQIVDKTGLRTLAVVTKADKSPEGLLEKVTADDVNIGLGYVCVRNRIGEESYEEARNEEQKLFESHSLLSKIDKSIAGIPVLAQKLVNVQAMIISKTLPEIIKKINEKLYNSVHELKTLPANLTSLADAMSAFLHIVSLSRDSLRKILLMGEFEEYPDDKQMHCTARLVERLNSYASDLQNCAESDSTKDFLMEEIVVLEEAKLIGLPNFMPRTAFLTLLQRKVKGISHMPTNFVDNVWSYLERVVISVMNRHSANYYQLQVATRRAVEHVIAKKKSNSIQHVMQAVDMEKHTDYTCNPEYLQEYNELMSYQEAFLKKVLDDDRCSSTVKLEGVGNIEVNHLIEYPINVLNQAFDLKARLIAYWKIVLRRLIDSIALHLMLSINELINNDLQKEICNELGGSVERLLEESPSISGKRQSLSRSVKVLRESKETVANIMDRIGVYGNN