Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27860.t1 | XP_003629868.1 | 96.1 | 675 | 25 | 1 | 1 | 675 | 1 | 674 | 0.00E+00 | 1233 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27860.t1 | Q9ZP55 | 55.7 | 672 | 286 | 4 | 3 | 668 | 2 | 667 | 7.6e-206 | 718.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27860.t1 | G7L7C1 | 96.1 | 675 | 25 | 1 | 1 | 675 | 1 | 674 | 0.0e+00 | 1233.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049142 | MS.gene27860 | 0.833491 | 5.17E-56 | -1.69E-46 |
MS.gene049418 | MS.gene27860 | 0.828851 | 7.14E-55 | -1.69E-46 |
MS.gene049698 | MS.gene27860 | 0.80408 | 2.56E-49 | -1.69E-46 |
MS.gene049711 | MS.gene27860 | 0.815915 | 7.24E-52 | -1.69E-46 |
MS.gene050551 | MS.gene27860 | 0.803131 | 4.03E-49 | -1.69E-46 |
MS.gene051018 | MS.gene27860 | 0.807209 | 5.65E-50 | -1.69E-46 |
MS.gene051388 | MS.gene27860 | 0.821279 | 4.39E-53 | -1.69E-46 |
MS.gene05150 | MS.gene27860 | 0.80258 | 5.24E-49 | -1.69E-46 |
MS.gene05157 | MS.gene27860 | 0.818966 | 1.49E-52 | -1.69E-46 |
MS.gene051720 | MS.gene27860 | 0.801379 | 9.26E-49 | -1.69E-46 |
MS.gene051744 | MS.gene27860 | 0.830873 | 2.30E-55 | -1.69E-46 |
MS.gene052732 | MS.gene27860 | 0.818685 | 1.72E-52 | -1.69E-46 |
MS.gene053122 | MS.gene27860 | 0.816312 | 5.90E-52 | -1.69E-46 |
MS.gene053144 | MS.gene27860 | 0.866661 | 2.42E-65 | -1.69E-46 |
MS.gene053226 | MS.gene27860 | 0.832922 | 7.17E-56 | -1.69E-46 |
MS.gene053536 | MS.gene27860 | 0.816445 | 5.51E-52 | -1.69E-46 |
MS.gene053538 | MS.gene27860 | 0.817449 | 3.28E-52 | -1.69E-46 |
MS.gene054584 | MS.gene27860 | 0.872498 | 3.04E-67 | -1.69E-46 |
MS.gene055144 | MS.gene27860 | 0.814028 | 1.90E-51 | -1.69E-46 |
MS.gene055465 | MS.gene27860 | 0.81246 | 4.19E-51 | -1.69E-46 |
MS.gene055466 | MS.gene27860 | 0.82049 | 6.67E-53 | -1.69E-46 |
MS.gene055468 | MS.gene27860 | 0.813617 | 2.34E-51 | -1.69E-46 |
MS.gene055513 | MS.gene27860 | 0.804904 | 1.73E-49 | -1.69E-46 |
MS.gene055537 | MS.gene27860 | 0.847158 | 1.38E-59 | -1.69E-46 |
MS.gene055580 | MS.gene27860 | -0.844628 | 6.72E-59 | -1.69E-46 |
MS.gene055764 | MS.gene27860 | 0.807366 | 5.24E-50 | -1.69E-46 |
MS.gene056043 | MS.gene27860 | -0.824993 | 5.97E-54 | -1.69E-46 |
MS.gene056050 | MS.gene27860 | 0.811277 | 7.59E-51 | -1.69E-46 |
MS.gene056308 | MS.gene27860 | 0.821918 | 3.13E-53 | -1.69E-46 |
MS.gene056368 | MS.gene27860 | 0.8184 | 2.00E-52 | -1.69E-46 |
MS.gene056507 | MS.gene27860 | 0.8187 | 1.71E-52 | -1.69E-46 |
MS.gene057132 | MS.gene27860 | 0.801564 | 8.49E-49 | -1.69E-46 |
MS.gene057915 | MS.gene27860 | 0.821452 | 4.01E-53 | -1.69E-46 |
MS.gene058668 | MS.gene27860 | 0.837549 | 4.87E-57 | -1.69E-46 |
MS.gene058823 | MS.gene27860 | 0.826823 | 2.20E-54 | -1.69E-46 |
MS.gene058909 | MS.gene27860 | 0.83735 | 5.47E-57 | -1.69E-46 |
MS.gene058912 | MS.gene27860 | 0.838457 | 2.84E-57 | -1.69E-46 |
MS.gene05894 | MS.gene27860 | 0.817513 | 3.17E-52 | -1.69E-46 |
MS.gene059424 | MS.gene27860 | 0.804096 | 2.54E-49 | -1.69E-46 |
MS.gene059570 | MS.gene27860 | 0.804099 | 2.54E-49 | -1.69E-46 |
MS.gene060962 | MS.gene27860 | 0.825586 | 4.33E-54 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene014901 | MS.gene27860 | PPI |
MS.gene27860 | MS.gene32695 | PPI |
MS.gene80193 | MS.gene27860 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27860.t1 | MTR_8g087770 | 96.148 | 675 | 25 | 1 | 1 | 675 | 1 | 674 | 0.0 | 1319 |
MS.gene27860.t1 | MTR_8g087750 | 81.994 | 672 | 111 | 5 | 6 | 672 | 11 | 677 | 0.0 | 1108 |
MS.gene27860.t1 | MTR_8g087763 | 76.991 | 226 | 51 | 1 | 374 | 599 | 4 | 228 | 1.82e-124 | 373 |
MS.gene27860.t1 | MTR_4g093750 | 37.846 | 325 | 180 | 9 | 67 | 376 | 35 | 352 | 2.87e-42 | 164 |
MS.gene27860.t1 | MTR_4g093750 | 39.726 | 292 | 154 | 9 | 67 | 343 | 35 | 319 | 1.60e-41 | 162 |
MS.gene27860.t1 | MTR_2g009690 | 36.624 | 314 | 187 | 6 | 63 | 366 | 40 | 351 | 2.00e-40 | 159 |
MS.gene27860.t1 | MTR_1g032550 | 35.336 | 283 | 163 | 7 | 69 | 337 | 35 | 311 | 2.99e-33 | 135 |
MS.gene27860.t1 | MTR_8g105580 | 35.461 | 282 | 163 | 6 | 69 | 337 | 35 | 310 | 1.53e-32 | 133 |
MS.gene27860.t1 | MTR_8g105580 | 35.461 | 282 | 163 | 6 | 69 | 337 | 35 | 310 | 1.53e-32 | 133 |
MS.gene27860.t1 | MTR_5g009150 | 42.473 | 186 | 105 | 2 | 69 | 252 | 35 | 220 | 8.01e-32 | 131 |
MS.gene27860.t1 | MTR_7g451010 | 35.274 | 292 | 165 | 8 | 69 | 346 | 40 | 321 | 2.37e-31 | 130 |
MS.gene27860.t1 | MTR_4g085860 | 75.641 | 78 | 18 | 1 | 206 | 282 | 2 | 79 | 7.47e-31 | 115 |
MS.gene27860.t1 | MTR_8g099550 | 42.105 | 190 | 100 | 3 | 69 | 252 | 34 | 219 | 8.76e-31 | 128 |
MS.gene27860.t1 | MTR_8g027675 | 41.709 | 199 | 105 | 5 | 69 | 264 | 34 | 224 | 1.29e-30 | 127 |
MS.gene27860.t1 | MTR_8g009510 | 34.494 | 316 | 183 | 9 | 69 | 369 | 40 | 346 | 1.48e-30 | 127 |
MS.gene27860.t1 | MTR_4g098920 | 34.483 | 319 | 179 | 10 | 69 | 369 | 34 | 340 | 2.07e-30 | 127 |
MS.gene27860.t1 | MTR_6g045107 | 74.359 | 78 | 19 | 1 | 206 | 282 | 2 | 79 | 7.25e-29 | 110 |
MS.gene27860.t1 | MTR_8g463270 | 30.303 | 231 | 142 | 7 | 54 | 269 | 27 | 253 | 1.73e-16 | 84.0 |
MS.gene27860.t1 | MTR_8g009510 | 30.488 | 246 | 151 | 6 | 136 | 369 | 2 | 239 | 6.74e-16 | 81.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27860.t1 | AT1G60500 | 55.655 | 672 | 286 | 4 | 3 | 668 | 2 | 667 | 0.0 | 763 |
MS.gene27860.t1 | AT1G60530 | 71.379 | 290 | 75 | 1 | 18 | 307 | 19 | 300 | 2.80e-142 | 417 |
MS.gene27860.t1 | AT4G33650 | 30.023 | 443 | 266 | 11 | 35 | 452 | 29 | 452 | 1.12e-39 | 156 |
MS.gene27860.t1 | AT4G33650 | 30.023 | 443 | 266 | 11 | 35 | 452 | 29 | 452 | 1.21e-39 | 156 |
MS.gene27860.t1 | AT2G14120 | 33.234 | 337 | 207 | 6 | 25 | 346 | 1 | 334 | 1.47e-38 | 152 |
MS.gene27860.t1 | AT2G14120 | 33.234 | 337 | 207 | 6 | 25 | 346 | 1 | 334 | 1.75e-38 | 153 |
MS.gene27860.t1 | AT2G14120 | 33.234 | 337 | 207 | 6 | 25 | 346 | 1 | 334 | 1.83e-38 | 152 |
MS.gene27860.t1 | AT2G14120 | 33.234 | 337 | 207 | 6 | 25 | 346 | 1 | 334 | 1.91e-38 | 153 |
MS.gene27860.t1 | AT1G14830 | 34.892 | 278 | 171 | 5 | 69 | 337 | 35 | 311 | 3.98e-34 | 138 |
MS.gene27860.t1 | AT3G60190 | 34.965 | 286 | 174 | 6 | 69 | 344 | 40 | 323 | 1.03e-31 | 131 |
MS.gene27860.t1 | AT5G42080 | 33.762 | 311 | 192 | 7 | 69 | 369 | 34 | 340 | 1.85e-31 | 128 |
MS.gene27860.t1 | AT5G42080 | 33.762 | 311 | 192 | 7 | 69 | 369 | 34 | 340 | 3.08e-31 | 129 |
MS.gene27860.t1 | AT5G42080 | 33.762 | 311 | 192 | 7 | 69 | 369 | 34 | 340 | 3.94e-31 | 129 |
MS.gene27860.t1 | AT5G42080 | 33.762 | 311 | 192 | 7 | 69 | 369 | 34 | 340 | 3.94e-31 | 129 |
MS.gene27860.t1 | AT2G44590 | 32.986 | 288 | 175 | 7 | 69 | 345 | 35 | 315 | 7.82e-31 | 128 |
MS.gene27860.t1 | AT3G61760 | 41.176 | 204 | 110 | 5 | 69 | 268 | 34 | 231 | 6.12e-30 | 124 |
MS.gene27860.t1 | AT3G61760 | 41.176 | 204 | 110 | 5 | 69 | 268 | 34 | 231 | 7.49e-30 | 125 |
MS.gene27860.t1 | AT3G61760 | 41.176 | 204 | 110 | 5 | 69 | 268 | 34 | 231 | 9.40e-30 | 125 |
MS.gene27860.t1 | AT2G44590 | 29.861 | 288 | 167 | 8 | 69 | 345 | 35 | 298 | 2.18e-21 | 99.4 |
MS.gene27860.t1 | AT2G44590 | 29.861 | 288 | 167 | 8 | 69 | 345 | 35 | 298 | 2.31e-21 | 99.0 |
MS.gene27860.t1 | AT1G53140 | 27.731 | 238 | 156 | 7 | 44 | 269 | 36 | 269 | 5.87e-15 | 79.3 |
Find 128 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAGGAGTCTCCATCTATTTC+TGG | 0.166668 | 4.1:+12997577 | MS.gene27860:CDS |
CATTGCTGGTATTCCTGTTT+TGG | 0.205580 | 4.1:+12996580 | MS.gene27860:CDS |
GCAGTTCTTGGCATGAAATT+TGG | 0.208693 | 4.1:-12996977 | None:intergenic |
TTAGTACTTGTGAGTCTATT+AGG | 0.242558 | 4.1:+12996330 | MS.gene27860:CDS |
ATCAAGTTTGTTTGCCTTTG+TGG | 0.244719 | 4.1:-12995694 | None:intergenic |
CTTGAGGAAGCTAAGTTAAT+TGG | 0.255531 | 4.1:+12996950 | MS.gene27860:CDS |
TGACAATGTGTGGAGCTATT+TGG | 0.298324 | 4.1:+12997060 | MS.gene27860:CDS |
TCTGAGAAAGATTCTTCTAA+TGG | 0.298751 | 4.1:+12996784 | MS.gene27860:CDS |
AATGTTAGAAAAGCAGTTCT+TGG | 0.299019 | 4.1:-12996989 | None:intergenic |
ATCTGATCATAAATGTTATC+AGG | 0.304162 | 4.1:-12996233 | None:intergenic |
TAACATTTATGATCAGATTA+AGG | 0.317964 | 4.1:+12996238 | MS.gene27860:CDS |
CTTCCAACCATTGTTGTTGT+TGG | 0.322456 | 4.1:+12995876 | MS.gene27860:CDS |
TGATGATGTTAACATTGGTT+TGG | 0.323376 | 4.1:+12996448 | MS.gene27860:CDS |
GCCTGCCAATTTGACTTCAT+TGG | 0.333846 | 4.1:+12996712 | MS.gene27860:CDS |
TCCACAGCCAGAGCTTGTTT+TGG | 0.338480 | 4.1:+12996016 | MS.gene27860:CDS |
TTCATTTCTTGCTTCTTCAT+AGG | 0.344245 | 4.1:-12996507 | None:intergenic |
AGAGACTGTGGCCAACATTA+TGG | 0.346194 | 4.1:+12997648 | MS.gene27860:CDS |
CTTACTATGGTTGATCTTCC+AGG | 0.352429 | 4.1:+12996182 | MS.gene27860:CDS |
ATCTGCCAATGAAGTCAAAT+TGG | 0.360580 | 4.1:-12996717 | None:intergenic |
CAAGGGTACCTTTGGTTATG+AGG | 0.366182 | 4.1:+12995976 | MS.gene27860:CDS |
CAATGCATTTGTTTATCATC+AGG | 0.370755 | 4.1:-12996824 | None:intergenic |
TGCAAACTATTACCAGTTGC+AGG | 0.374084 | 4.1:+12997117 | MS.gene27860:CDS |
TGGAGTTCCTGATCTTACTA+TGG | 0.379945 | 4.1:+12996169 | MS.gene27860:CDS |
ACTTTCTCCAACAAACCTTC+AGG | 0.384947 | 4.1:-12996419 | None:intergenic |
CTGAGAAAGATTCTTCTAAT+GGG | 0.390787 | 4.1:+12996785 | MS.gene27860:CDS |
GATGATGTTAACATTGGTTT+GGG | 0.391771 | 4.1:+12996449 | MS.gene27860:CDS |
TTCAAAATAATACTCTCTTC+AGG | 0.392099 | 4.1:-12996284 | None:intergenic |
GCTCTGGCTGTGGAAGTAAA+TGG | 0.394731 | 4.1:-12996007 | None:intergenic |
TTCCATTAGGAAATCCTTTG+TGG | 0.394982 | 4.1:-12996915 | None:intergenic |
ATAACTCGTGTTCCTGTTCA+TGG | 0.396246 | 4.1:+12996206 | MS.gene27860:CDS |
TTGATCTTCTTAATTATCTC+AGG | 0.396848 | 4.1:-12996650 | None:intergenic |
TCACAGATAGTTGATAAAAC+TGG | 0.398319 | 4.1:+12996356 | MS.gene27860:CDS |
AGGCAAGATTAATTGCCTAT+TGG | 0.399341 | 4.1:+12997425 | MS.gene27860:CDS |
TCCGATCAATGTGTTGAATC+AGG | 0.406853 | 4.1:+12997390 | MS.gene27860:CDS |
AAGATTGACAAATCCATTGC+TGG | 0.411898 | 4.1:+12996566 | MS.gene27860:CDS |
GAATCAGGCCTTTGACTTGA+AGG | 0.413968 | 4.1:+12997405 | MS.gene27860:CDS |
ATGGACAGGATTGGAGTCTA+TGG | 0.415221 | 4.1:+12997667 | MS.gene27860:CDS |
TTGATGCTCTTGAAAATCTA+AGG | 0.416842 | 4.1:+12995823 | MS.gene27860:CDS |
TTGCAATCCGGAGTACTTGC+AGG | 0.423704 | 4.1:+12997243 | MS.gene27860:CDS |
AATTTGTACAAGGGTACCTT+TGG | 0.424069 | 4.1:+12995968 | MS.gene27860:CDS |
TCAAGTACTGTGAAGCTTGA+AGG | 0.424080 | 4.1:+12997331 | MS.gene27860:CDS |
TGTCTCTTACCAGAAATAGA+TGG | 0.425419 | 4.1:-12997586 | None:intergenic |
GGACTACGATCTCTTCCATT+AGG | 0.434291 | 4.1:-12996928 | None:intergenic |
TGTGATGCAAGCTGTTGATA+TGG | 0.436114 | 4.1:+12997201 | MS.gene27860:CDS |
TAAATCACCTGAAGGTTTGT+TGG | 0.440077 | 4.1:+12996412 | MS.gene27860:CDS |
TTTGGAAAGGGTTGTTATCT+CGG | 0.442091 | 4.1:+12997078 | MS.gene27860:CDS |
ACAGCCACTGAGGAGCTTGC+TGG | 0.443000 | 4.1:+12996095 | MS.gene27860:CDS |
CCTCAGCACAATCTTCCAAT+AGG | 0.443004 | 4.1:-12997440 | None:intergenic |
TGGGGTGTTGGAAATCCCTT+TGG | 0.443439 | 4.1:-12996123 | None:intergenic |
TTCCACAAAGGATTTCCTAA+TGG | 0.449900 | 4.1:+12996913 | MS.gene27860:CDS |
ACAAGCTTCTGAGCCAAAAC+AGG | 0.453897 | 4.1:-12996593 | None:intergenic |
ACATTGTCAACAAAATTAGT+TGG | 0.454264 | 4.1:-12997046 | None:intergenic |
GCATTGTACTGCTCGGTTAG+TGG | 0.455271 | 4.1:+12996841 | MS.gene27860:CDS |
TCATTATAAGAAGATACAAT+TGG | 0.458646 | 4.1:-12995783 | None:intergenic |
TACGAGTAGCAACCTGCAAC+TGG | 0.461514 | 4.1:-12997129 | None:intergenic |
ACAATTGGTGCAACAGATAG+AGG | 0.467988 | 4.1:-12995768 | None:intergenic |
TCTTTACTATCAAAGTCAGT+GGG | 0.470875 | 4.1:-12996142 | None:intergenic |
TGATACCAGCTAATGATTCA+AGG | 0.474056 | 4.1:-12995926 | None:intergenic |
GAGCTTGCTGGCACTGCCAA+AGG | 0.478600 | 4.1:+12996107 | MS.gene27860:CDS |
GTTGTTGGAGATCAATCATC+TGG | 0.485196 | 4.1:+12995891 | MS.gene27860:CDS |
TTATACTCCAAAACAAGCTC+TGG | 0.492061 | 4.1:-12996023 | None:intergenic |
TATCAAAGTCAGTGGGGTGT+TGG | 0.492352 | 4.1:-12996135 | None:intergenic |
TTATCAGGTTGACCATGAAC+AGG | 0.495576 | 4.1:-12996218 | None:intergenic |
GCGTCTCAACATTGCTAAAG+AGG | 0.501157 | 4.1:+12995845 | MS.gene27860:CDS |
AGCTTGCATCACATGTTGAA+TGG | 0.501675 | 4.1:-12997191 | None:intergenic |
GCCAATGAAGTCAAATTGGC+AGG | 0.504122 | 4.1:-12996713 | None:intergenic |
CACGGATTACACTTGCAATC+CGG | 0.511102 | 4.1:+12997231 | MS.gene27860:CDS |
TTTGTGTGAGAAATCGCATT+GGG | 0.515555 | 4.1:+12996477 | MS.gene27860:CDS |
GTAAGAGACAAAGTTTAAGC+AGG | 0.516534 | 4.1:+12997599 | MS.gene27860:CDS |
AATGCATTTGTTTATCATCA+GGG | 0.517273 | 4.1:-12996823 | None:intergenic |
TCCAATCCTGTCCATAATGT+TGG | 0.522411 | 4.1:-12997659 | None:intergenic |
AGATCAACCATAGTAAGATC+AGG | 0.522883 | 4.1:-12996176 | None:intergenic |
AGTGTCCTTGAATCATTAGC+TGG | 0.523168 | 4.1:+12995921 | MS.gene27860:CDS |
TCCAAAACAAGCTCTGGCTG+TGG | 0.524796 | 4.1:-12996017 | None:intergenic |
GGTGCAACAGATAGAGGTTG+AGG | 0.525331 | 4.1:-12995762 | None:intergenic |
TAATCTTGCCTTCAAGTCAA+AGG | 0.534214 | 4.1:-12997413 | None:intergenic |
GCCAACATTATGGACAGGAT+TGG | 0.534644 | 4.1:+12997658 | MS.gene27860:CDS |
GCCTGATTCAACACATTGAT+CGG | 0.536471 | 4.1:-12997391 | None:intergenic |
AAGGAGATTTGTAATGAACT+TGG | 0.538785 | 4.1:+12997532 | MS.gene27860:CDS |
ATCAGCTTGCCACGTGGACA+AGG | 0.540401 | 4.1:+12995945 | MS.gene27860:CDS |
TCAGATTAAGGATATTATCA+TGG | 0.543580 | 4.1:+12996250 | MS.gene27860:CDS |
TTATATTCCTGCAAGTACTC+CGG | 0.543933 | 4.1:-12997250 | None:intergenic |
AGCTTGCTGGCACTGCCAAA+GGG | 0.547647 | 4.1:+12996108 | MS.gene27860:CDS |
ATGTGTGGAGCTATTTGGAA+AGG | 0.549884 | 4.1:+12997065 | MS.gene27860:CDS |
AACAAATGCATTGTACTGCT+CGG | 0.550416 | 4.1:+12996834 | MS.gene27860:CDS |
TCTCCAACAACAACAATGGT+TGG | 0.551269 | 4.1:-12995879 | None:intergenic |
GAGATTTGTAATGAACTTGG+TGG | 0.560761 | 4.1:+12997535 | MS.gene27860:CDS |
ACTTTGATAGTAAAGAAGAA+TGG | 0.569006 | 4.1:+12996149 | MS.gene27860:CDS |
TAGTTGATAAAACTGGTTTG+AGG | 0.569831 | 4.1:+12996363 | MS.gene27860:CDS |
GTACTGCTCGGTTAGTGGAG+AGG | 0.571484 | 4.1:+12996846 | MS.gene27860:CDS |
CTGTGGCCAACATTATGGAC+AGG | 0.573065 | 4.1:+12997653 | MS.gene27860:CDS |
GACATTAGCTGTTGTAACAA+AGG | 0.576294 | 4.1:+12996385 | MS.gene27860:CDS |
ATTACTTCAGAGAAAAGTGA+AGG | 0.577066 | 4.1:+12997009 | MS.gene27860:CDS |
AGTGCCAGCAAGCTCCTCAG+TGG | 0.578957 | 4.1:-12996099 | None:intergenic |
TTCTTTACTATCAAAGTCAG+TGG | 0.579933 | 4.1:-12996143 | None:intergenic |
CGTCTCAACATTGCTAAAGA+GGG | 0.585949 | 4.1:+12995846 | MS.gene27860:CDS |
GTGGACAAGGAATTTGTACA+AGG | 0.592993 | 4.1:+12995958 | MS.gene27860:CDS |
CAGTGTTGAGAGGCTGCTTG+AGG | 0.594487 | 4.1:+12997558 | MS.gene27860:CDS |
GGAAGAGATCGTAGTCCTTG+AGG | 0.596070 | 4.1:+12996934 | MS.gene27860:CDS |
ATTGGAAGATTGTGCTGAGG+AGG | 0.597029 | 4.1:+12997443 | MS.gene27860:CDS |
CAAACAACTTTCAACTGATG+AGG | 0.601066 | 4.1:+12996049 | MS.gene27860:CDS |
ACTGTGAAGCTTGAAGGAGT+TGG | 0.602736 | 4.1:+12997337 | MS.gene27860:CDS |
TGTGAGAAATCGCATTGGGG+AGG | 0.608396 | 4.1:+12996481 | MS.gene27860:CDS |
GGTTGCTACTCGTAGAGCTG+TGG | 0.612719 | 4.1:+12997138 | MS.gene27860:CDS |
ACAGGAACACGAGTTATACC+TGG | 0.615115 | 4.1:-12996200 | None:intergenic |
TGTGTGGAGCTATTTGGAAA+GGG | 0.616400 | 4.1:+12997066 | MS.gene27860:CDS |
CAAAACAGGAATACCAGCAA+TGG | 0.616931 | 4.1:-12996579 | None:intergenic |
CAATTAACTTAGCTTCCTCA+AGG | 0.618556 | 4.1:-12996949 | None:intergenic |
GATTAACAATGATCTGCAGA+AGG | 0.625104 | 4.1:+12997513 | MS.gene27860:CDS |
ACTGCTGATGATGTTAACAT+TGG | 0.625783 | 4.1:+12996443 | MS.gene27860:CDS |
AAGGCTGATAAATCACCTGA+AGG | 0.627415 | 4.1:+12996404 | MS.gene27860:CDS |
TTGATCTCCAACAACAACAA+TGG | 0.648908 | 4.1:-12995883 | None:intergenic |
TAGAGAAAGCAAAGAGACTG+TGG | 0.654791 | 4.1:+12997636 | MS.gene27860:CDS |
GTACAAATTCCTTGTCCACG+TGG | 0.660130 | 4.1:-12995954 | None:intergenic |
TTACTTCAGAGAAAAGTGAA+GGG | 0.662697 | 4.1:+12997010 | MS.gene27860:CDS |
TGTTGATATGGAGAAGCACA+CGG | 0.665028 | 4.1:+12997213 | MS.gene27860:CDS |
AACTTGGTGGCAGTGTTGAG+AGG | 0.665158 | 4.1:+12997548 | MS.gene27860:CDS |
GTTTGTGTGAGAAATCGCAT+TGG | 0.677044 | 4.1:+12996476 | MS.gene27860:CDS |
TGCTATAAATACAGCCACTG+AGG | 0.694192 | 4.1:+12996085 | MS.gene27860:CDS |
CTTTACTATCAAAGTCAGTG+GGG | 0.697240 | 4.1:-12996141 | None:intergenic |
TGCTGAAAGTGATTCCACAA+AGG | 0.697479 | 4.1:+12996901 | MS.gene27860:CDS |
GCTGGTATCAGCTTGCCACG+TGG | 0.699523 | 4.1:+12995939 | MS.gene27860:CDS |
GTTGATCATCAACATCAACA+TGG | 0.706155 | 4.1:-12995740 | None:intergenic |
TGGAAACAAGAGTTCCACAA+AGG | 0.707464 | 4.1:+12995680 | MS.gene27860:CDS |
CCTATTGGAAGATTGTGCTG+AGG | 0.716472 | 4.1:+12997440 | MS.gene27860:CDS |
TGGACAAGGAATTTGTACAA+GGG | 0.728664 | 4.1:+12995959 | MS.gene27860:CDS |
TTGTGTGAGAAATCGCATTG+GGG | 0.740526 | 4.1:+12996478 | MS.gene27860:CDS |
ACTGGTAATAGTTTGCAGAG+TGG | 0.741343 | 4.1:-12997111 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAACATTTATGATCAGATTA+AGG | + | chr4.1:12996238-12996257 | MS.gene27860:CDS | 20.0% |
!! | TCATTATAAGAAGATACAAT+TGG | - | chr4.1:12995786-12995805 | None:intergenic | 20.0% |
!!! | AGCATTTTTGAAAAAAGTTT+TGG | + | chr4.1:12997294-12997313 | MS.gene27860:CDS | 20.0% |
! | AATGCATTTGTTTATCATCA+GGG | - | chr4.1:12996826-12996845 | None:intergenic | 25.0% |
! | ACATTGTCAACAAAATTAGT+TGG | - | chr4.1:12997049-12997068 | None:intergenic | 25.0% |
! | ATCTGATCATAAATGTTATC+AGG | - | chr4.1:12996236-12996255 | None:intergenic | 25.0% |
! | TCAGATTAAGGATATTATCA+TGG | + | chr4.1:12996250-12996269 | MS.gene27860:CDS | 25.0% |
! | TTCAAAATAATACTCTCTTC+AGG | - | chr4.1:12996287-12996306 | None:intergenic | 25.0% |
! | TTGATCTTCTTAATTATCTC+AGG | - | chr4.1:12996653-12996672 | None:intergenic | 25.0% |
!! | ACTTTGATAGTAAAGAAGAA+TGG | + | chr4.1:12996149-12996168 | MS.gene27860:CDS | 25.0% |
AAGGAGATTTGTAATGAACT+TGG | + | chr4.1:12997532-12997551 | MS.gene27860:CDS | 30.0% | |
AATGTTAGAAAAGCAGTTCT+TGG | - | chr4.1:12996992-12997011 | None:intergenic | 30.0% | |
ATTACTTCAGAGAAAAGTGA+AGG | + | chr4.1:12997009-12997028 | MS.gene27860:CDS | 30.0% | |
CAATGCATTTGTTTATCATC+AGG | - | chr4.1:12996827-12996846 | None:intergenic | 30.0% | |
CTGAGAAAGATTCTTCTAAT+GGG | + | chr4.1:12996785-12996804 | MS.gene27860:CDS | 30.0% | |
TCTGAGAAAGATTCTTCTAA+TGG | + | chr4.1:12996784-12996803 | MS.gene27860:CDS | 30.0% | |
TCTTTACTATCAAAGTCAGT+GGG | - | chr4.1:12996145-12996164 | None:intergenic | 30.0% | |
TTACTTCAGAGAAAAGTGAA+GGG | + | chr4.1:12997010-12997029 | MS.gene27860:CDS | 30.0% | |
TTAGTACTTGTGAGTCTATT+AGG | + | chr4.1:12996330-12996349 | MS.gene27860:CDS | 30.0% | |
TTCATTTCTTGCTTCTTCAT+AGG | - | chr4.1:12996510-12996529 | None:intergenic | 30.0% | |
TTCTTTACTATCAAAGTCAG+TGG | - | chr4.1:12996146-12996165 | None:intergenic | 30.0% | |
TTGATGCTCTTGAAAATCTA+AGG | + | chr4.1:12995823-12995842 | MS.gene27860:CDS | 30.0% | |
! | CTAATTTTGTTGACAATGTG+TGG | + | chr4.1:12997050-12997069 | MS.gene27860:CDS | 30.0% |
! | TGATGATGTTAACATTGGTT+TGG | + | chr4.1:12996448-12996467 | MS.gene27860:CDS | 30.0% |
!! | GATGATGTTAACATTGGTTT+GGG | + | chr4.1:12996449-12996468 | MS.gene27860:CDS | 30.0% |
!! | TAGTTGATAAAACTGGTTTG+AGG | + | chr4.1:12996363-12996382 | MS.gene27860:CDS | 30.0% |
!! | TCACAGATAGTTGATAAAAC+TGG | + | chr4.1:12996356-12996375 | MS.gene27860:CDS | 30.0% |
AACAAATGCATTGTACTGCT+CGG | + | chr4.1:12996834-12996853 | MS.gene27860:CDS | 35.0% | |
AAGATTGACAAATCCATTGC+TGG | + | chr4.1:12996566-12996585 | MS.gene27860:CDS | 35.0% | |
AGATCAACCATAGTAAGATC+AGG | - | chr4.1:12996179-12996198 | None:intergenic | 35.0% | |
AGGCAAGATTAATTGCCTAT+TGG | + | chr4.1:12997425-12997444 | MS.gene27860:CDS | 35.0% | |
ATCTGCCAATGAAGTCAAAT+TGG | - | chr4.1:12996720-12996739 | None:intergenic | 35.0% | |
CAAACAACTTTCAACTGATG+AGG | + | chr4.1:12996049-12996068 | MS.gene27860:CDS | 35.0% | |
CAATTAACTTAGCTTCCTCA+AGG | - | chr4.1:12996952-12996971 | None:intergenic | 35.0% | |
CTTGAGGAAGCTAAGTTAAT+TGG | + | chr4.1:12996950-12996969 | MS.gene27860:CDS | 35.0% | |
CTTTACTATCAAAGTCAGTG+GGG | - | chr4.1:12996144-12996163 | None:intergenic | 35.0% | |
GACATTAGCTGTTGTAACAA+AGG | + | chr4.1:12996385-12996404 | MS.gene27860:CDS | 35.0% | |
GAGATTTGTAATGAACTTGG+TGG | + | chr4.1:12997535-12997554 | MS.gene27860:CDS | 35.0% | |
GATTAACAATGATCTGCAGA+AGG | + | chr4.1:12997513-12997532 | MS.gene27860:CDS | 35.0% | |
GTAAGAGACAAAGTTTAAGC+AGG | + | chr4.1:12997599-12997618 | MS.gene27860:CDS | 35.0% | |
GTTGATCATCAACATCAACA+TGG | - | chr4.1:12995743-12995762 | None:intergenic | 35.0% | |
TAAATCACCTGAAGGTTTGT+TGG | + | chr4.1:12996412-12996431 | MS.gene27860:CDS | 35.0% | |
TAATCTTGCCTTCAAGTCAA+AGG | - | chr4.1:12997416-12997435 | None:intergenic | 35.0% | |
TGATACCAGCTAATGATTCA+AGG | - | chr4.1:12995929-12995948 | None:intergenic | 35.0% | |
TGGACAAGGAATTTGTACAA+GGG | + | chr4.1:12995959-12995978 | MS.gene27860:CDS | 35.0% | |
TGTCTCTTACCAGAAATAGA+TGG | - | chr4.1:12997589-12997608 | None:intergenic | 35.0% | |
TTATACTCCAAAACAAGCTC+TGG | - | chr4.1:12996026-12996045 | None:intergenic | 35.0% | |
TTATATTCCTGCAAGTACTC+CGG | - | chr4.1:12997253-12997272 | None:intergenic | 35.0% | |
TTCCACAAAGGATTTCCTAA+TGG | + | chr4.1:12996913-12996932 | MS.gene27860:CDS | 35.0% | |
TTCCATTAGGAAATCCTTTG+TGG | - | chr4.1:12996918-12996937 | None:intergenic | 35.0% | |
TTGATCTCCAACAACAACAA+TGG | - | chr4.1:12995886-12995905 | None:intergenic | 35.0% | |
TTTGGAAAGGGTTGTTATCT+CGG | + | chr4.1:12997078-12997097 | MS.gene27860:CDS | 35.0% | |
TTTGTGTGAGAAATCGCATT+GGG | + | chr4.1:12996477-12996496 | MS.gene27860:CDS | 35.0% | |
! | ACTGCTGATGATGTTAACAT+TGG | + | chr4.1:12996443-12996462 | MS.gene27860:CDS | 35.0% |
! | ATCAAGTTTGTTTGCCTTTG+TGG | - | chr4.1:12995697-12995716 | None:intergenic | 35.0% |
!! | AATTTGTACAAGGGTACCTT+TGG | + | chr4.1:12995968-12995987 | MS.gene27860:CDS | 35.0% |
!!! | GAGCTTGTTTTGGAGTATAA+TGG | + | chr4.1:12996026-12996045 | MS.gene27860:CDS | 35.0% |
AAGGCTGATAAATCACCTGA+AGG | + | chr4.1:12996404-12996423 | MS.gene27860:CDS | 40.0% | |
ACAATTGGTGCAACAGATAG+AGG | - | chr4.1:12995771-12995790 | None:intergenic | 40.0% | |
ACTTTCTCCAACAAACCTTC+AGG | - | chr4.1:12996422-12996441 | None:intergenic | 40.0% | |
AGCTTGCATCACATGTTGAA+TGG | - | chr4.1:12997194-12997213 | None:intergenic | 40.0% | |
AGTGTCCTTGAATCATTAGC+TGG | + | chr4.1:12995921-12995940 | MS.gene27860:CDS | 40.0% | |
ATAACTCGTGTTCCTGTTCA+TGG | + | chr4.1:12996206-12996225 | MS.gene27860:CDS | 40.0% | |
ATGTGTGGAGCTATTTGGAA+AGG | + | chr4.1:12997065-12997084 | MS.gene27860:CDS | 40.0% | |
CAAAACAGGAATACCAGCAA+TGG | - | chr4.1:12996582-12996601 | None:intergenic | 40.0% | |
CGTCTCAACATTGCTAAAGA+GGG | + | chr4.1:12995846-12995865 | MS.gene27860:CDS | 40.0% | |
CTTACTATGGTTGATCTTCC+AGG | + | chr4.1:12996182-12996201 | MS.gene27860:CDS | 40.0% | |
GCAGTTCTTGGCATGAAATT+TGG | - | chr4.1:12996980-12996999 | None:intergenic | 40.0% | |
GCCTGATTCAACACATTGAT+CGG | - | chr4.1:12997394-12997413 | None:intergenic | 40.0% | |
GTGGACAAGGAATTTGTACA+AGG | + | chr4.1:12995958-12995977 | MS.gene27860:CDS | 40.0% | |
GTTGTTGGAGATCAATCATC+TGG | + | chr4.1:12995891-12995910 | MS.gene27860:CDS | 40.0% | |
GTTTGTGTGAGAAATCGCAT+TGG | + | chr4.1:12996476-12996495 | MS.gene27860:CDS | 40.0% | |
TAGAGAAAGCAAAGAGACTG+TGG | + | chr4.1:12997636-12997655 | MS.gene27860:CDS | 40.0% | |
TCCAATCCTGTCCATAATGT+TGG | - | chr4.1:12997662-12997681 | None:intergenic | 40.0% | |
TCCGATCAATGTGTTGAATC+AGG | + | chr4.1:12997390-12997409 | MS.gene27860:CDS | 40.0% | |
TCTCCAACAACAACAATGGT+TGG | - | chr4.1:12995882-12995901 | None:intergenic | 40.0% | |
TGACAATGTGTGGAGCTATT+TGG | + | chr4.1:12997060-12997079 | MS.gene27860:CDS | 40.0% | |
TGCAAACTATTACCAGTTGC+AGG | + | chr4.1:12997117-12997136 | MS.gene27860:CDS | 40.0% | |
TGCTATAAATACAGCCACTG+AGG | + | chr4.1:12996085-12996104 | MS.gene27860:CDS | 40.0% | |
TGCTGAAAGTGATTCCACAA+AGG | + | chr4.1:12996901-12996920 | MS.gene27860:CDS | 40.0% | |
TGGAAACAAGAGTTCCACAA+AGG | + | chr4.1:12995680-12995699 | MS.gene27860:CDS | 40.0% | |
TGGAGTTCCTGATCTTACTA+TGG | + | chr4.1:12996169-12996188 | MS.gene27860:CDS | 40.0% | |
TGTGATGCAAGCTGTTGATA+TGG | + | chr4.1:12997201-12997220 | MS.gene27860:CDS | 40.0% | |
TGTGTGGAGCTATTTGGAAA+GGG | + | chr4.1:12997066-12997085 | MS.gene27860:CDS | 40.0% | |
TTGTGTGAGAAATCGCATTG+GGG | + | chr4.1:12996478-12996497 | MS.gene27860:CDS | 40.0% | |
! | ACTGGTAATAGTTTGCAGAG+TGG | - | chr4.1:12997114-12997133 | None:intergenic | 40.0% |
! | CATTGCTGGTATTCCTGTTT+TGG | + | chr4.1:12996580-12996599 | MS.gene27860:CDS | 40.0% |
! | CTTCCAACCATTGTTGTTGT+TGG | + | chr4.1:12995876-12995895 | MS.gene27860:CDS | 40.0% |
! | TCAAGTACTGTGAAGCTTGA+AGG | + | chr4.1:12997331-12997350 | MS.gene27860:CDS | 40.0% |
! | TGTTGATATGGAGAAGCACA+CGG | + | chr4.1:12997213-12997232 | MS.gene27860:CDS | 40.0% |
! | TTTTGCAGCCTCATAACCAA+AGG | - | chr4.1:12995987-12996006 | None:intergenic | 40.0% |
!! | TTATCAGGTTGACCATGAAC+AGG | - | chr4.1:12996221-12996240 | None:intergenic | 40.0% |
!!! | TTTTCAAGAGCATCAAGCAC+TGG | - | chr4.1:12995819-12995838 | None:intergenic | 40.0% |
ACAAGCTTCTGAGCCAAAAC+AGG | - | chr4.1:12996596-12996615 | None:intergenic | 45.0% | |
ACAGGAACACGAGTTATACC+TGG | - | chr4.1:12996203-12996222 | None:intergenic | 45.0% | |
ACTGTGAAGCTTGAAGGAGT+TGG | + | chr4.1:12997337-12997356 | MS.gene27860:CDS | 45.0% | |
AGAGACTGTGGCCAACATTA+TGG | + | chr4.1:12997648-12997667 | MS.gene27860:CDS | 45.0% | |
ATGGACAGGATTGGAGTCTA+TGG | + | chr4.1:12997667-12997686 | MS.gene27860:CDS | 45.0% | |
ATTGGAAGATTGTGCTGAGG+AGG | + | chr4.1:12997443-12997462 | MS.gene27860:CDS | 45.0% | |
CCTATTGGAAGATTGTGCTG+AGG | + | chr4.1:12997440-12997459 | MS.gene27860:CDS | 45.0% | |
CCTCAGCACAATCTTCCAAT+AGG | - | chr4.1:12997443-12997462 | None:intergenic | 45.0% | |
GAGGAGTCTCCATCTATTTC+TGG | + | chr4.1:12997577-12997596 | MS.gene27860:CDS | 45.0% | |
GCCAACATTATGGACAGGAT+TGG | + | chr4.1:12997658-12997677 | MS.gene27860:CDS | 45.0% | |
GCCAATGAAGTCAAATTGGC+AGG | - | chr4.1:12996716-12996735 | None:intergenic | 45.0% | |
GCGTCTCAACATTGCTAAAG+AGG | + | chr4.1:12995845-12995864 | MS.gene27860:CDS | 45.0% | |
GGACTACGATCTCTTCCATT+AGG | - | chr4.1:12996931-12996950 | None:intergenic | 45.0% | |
GTACAAATTCCTTGTCCACG+TGG | - | chr4.1:12995957-12995976 | None:intergenic | 45.0% | |
TATCAAAGTCAGTGGGGTGT+TGG | - | chr4.1:12996138-12996157 | None:intergenic | 45.0% | |
! | CACGGATTACACTTGCAATC+CGG | + | chr4.1:12997231-12997250 | MS.gene27860:CDS | 45.0% |
! | GCCTGCCAATTTGACTTCAT+TGG | + | chr4.1:12996712-12996731 | MS.gene27860:CDS | 45.0% |
!! | CAAGGGTACCTTTGGTTATG+AGG | + | chr4.1:12995976-12995995 | MS.gene27860:CDS | 45.0% |
!! | GAATCAGGCCTTTGACTTGA+AGG | + | chr4.1:12997405-12997424 | MS.gene27860:CDS | 45.0% |
CTGTGGCCAACATTATGGAC+AGG | + | chr4.1:12997653-12997672 | MS.gene27860:CDS | 50.0% | |
GCATTGTACTGCTCGGTTAG+TGG | + | chr4.1:12996841-12996860 | MS.gene27860:CDS | 50.0% | |
GCTCTGGCTGTGGAAGTAAA+TGG | - | chr4.1:12996010-12996029 | None:intergenic | 50.0% | |
GGAAGAGATCGTAGTCCTTG+AGG | + | chr4.1:12996934-12996953 | MS.gene27860:CDS | 50.0% | |
GGTGCAACAGATAGAGGTTG+AGG | - | chr4.1:12995765-12995784 | None:intergenic | 50.0% | |
TACGAGTAGCAACCTGCAAC+TGG | - | chr4.1:12997132-12997151 | None:intergenic | 50.0% | |
TGTGAGAAATCGCATTGGGG+AGG | + | chr4.1:12996481-12996500 | MS.gene27860:CDS | 50.0% | |
! | AACTTGGTGGCAGTGTTGAG+AGG | + | chr4.1:12997548-12997567 | MS.gene27860:CDS | 50.0% |
! | TCCAAAACAAGCTCTGGCTG+TGG | - | chr4.1:12996020-12996039 | None:intergenic | 50.0% |
! | TTGCAATCCGGAGTACTTGC+AGG | + | chr4.1:12997243-12997262 | MS.gene27860:CDS | 50.0% |
!! | TCCACAGCCAGAGCTTGTTT+TGG | + | chr4.1:12996016-12996035 | MS.gene27860:CDS | 50.0% |
!! | TGGGGTGTTGGAAATCCCTT+TGG | - | chr4.1:12996126-12996145 | None:intergenic | 50.0% |
ATCAGCTTGCCACGTGGACA+AGG | + | chr4.1:12995945-12995964 | MS.gene27860:CDS | 55.0% | |
GGTTGCTACTCGTAGAGCTG+TGG | + | chr4.1:12997138-12997157 | MS.gene27860:CDS | 55.0% | |
GTACTGCTCGGTTAGTGGAG+AGG | + | chr4.1:12996846-12996865 | MS.gene27860:CDS | 55.0% | |
! | CAGTGTTGAGAGGCTGCTTG+AGG | + | chr4.1:12997558-12997577 | MS.gene27860:CDS | 55.0% |
!! | AGCTTGCTGGCACTGCCAAA+GGG | + | chr4.1:12996108-12996127 | MS.gene27860:CDS | 55.0% |
ACAGCCACTGAGGAGCTTGC+TGG | + | chr4.1:12996095-12996114 | MS.gene27860:CDS | 60.0% | |
AGTGCCAGCAAGCTCCTCAG+TGG | - | chr4.1:12996102-12996121 | None:intergenic | 60.0% | |
GCTGGTATCAGCTTGCCACG+TGG | + | chr4.1:12995939-12995958 | MS.gene27860:CDS | 60.0% | |
!! | GAGCTTGCTGGCACTGCCAA+AGG | + | chr4.1:12996107-12996126 | MS.gene27860:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.1 | gene | 12995672 | 12997699 | 12995672 | ID=MS.gene27860 |
chr4.1 | mRNA | 12995672 | 12997699 | 12995672 | ID=MS.gene27860.t1;Parent=MS.gene27860 |
chr4.1 | exon | 12995672 | 12997699 | 12995672 | ID=MS.gene27860.t1.exon1;Parent=MS.gene27860.t1 |
chr4.1 | CDS | 12995672 | 12997699 | 12995672 | ID=cds.MS.gene27860.t1;Parent=MS.gene27860.t1 |
Gene Sequence |
Protein sequence |