Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27921.t1 | XP_003629943.2 | 99.3 | 724 | 5 | 0 | 1 | 724 | 1 | 724 | 0.00E+00 | 1177.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27921.t1 | Q5XIN6 | 46.9 | 322 | 165 | 3 | 178 | 497 | 155 | 472 | 1.8e-72 | 275.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27921.t1 | G7L8S9 | 99.3 | 724 | 5 | 0 | 1 | 724 | 1 | 724 | 0.0e+00 | 1177.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049207 | MS.gene27921 | 0.866286 | 3.19E-65 | -1.69E-46 |
| MS.gene049283 | MS.gene27921 | 0.831461 | 1.65E-55 | -1.69E-46 |
| MS.gene049824 | MS.gene27921 | 0.832384 | 9.75E-56 | -1.69E-46 |
| MS.gene049825 | MS.gene27921 | 0.810962 | 8.88E-51 | -1.69E-46 |
| MS.gene050559 | MS.gene27921 | 0.818882 | 1.55E-52 | -1.69E-46 |
| MS.gene050561 | MS.gene27921 | 0.806579 | 7.68E-50 | -1.69E-46 |
| MS.gene050562 | MS.gene27921 | 0.808022 | 3.80E-50 | -1.69E-46 |
| MS.gene050885 | MS.gene27921 | 0.814423 | 1.55E-51 | -1.69E-46 |
| MS.gene051597 | MS.gene27921 | 0.835868 | 1.31E-56 | -1.69E-46 |
| MS.gene052500 | MS.gene27921 | 0.817027 | 4.08E-52 | -1.69E-46 |
| MS.gene052502 | MS.gene27921 | 0.81592 | 7.22E-52 | -1.69E-46 |
| MS.gene052717 | MS.gene27921 | 0.804042 | 2.61E-49 | -1.69E-46 |
| MS.gene052826 | MS.gene27921 | 0.819696 | 1.01E-52 | -1.69E-46 |
| MS.gene052954 | MS.gene27921 | 0.816974 | 4.19E-52 | -1.69E-46 |
| MS.gene053080 | MS.gene27921 | 0.817863 | 2.64E-52 | -1.69E-46 |
| MS.gene053226 | MS.gene27921 | 0.806215 | 9.17E-50 | -1.69E-46 |
| MS.gene053931 | MS.gene27921 | 0.809455 | 1.88E-50 | -1.69E-46 |
| MS.gene053963 | MS.gene27921 | 0.829933 | 3.90E-55 | -1.69E-46 |
| MS.gene053995 | MS.gene27921 | 0.8146 | 1.42E-51 | -1.69E-46 |
| MS.gene054328 | MS.gene27921 | 0.805517 | 1.28E-49 | -1.69E-46 |
| MS.gene054957 | MS.gene27921 | 0.814314 | 1.64E-51 | -1.69E-46 |
| MS.gene055808 | MS.gene27921 | 0.846441 | 2.17E-59 | -1.69E-46 |
| MS.gene056091 | MS.gene27921 | 0.829154 | 6.03E-55 | -1.69E-46 |
| MS.gene056403 | MS.gene27921 | 0.857615 | 1.45E-62 | -1.69E-46 |
| MS.gene05659 | MS.gene27921 | 0.81009 | 1.37E-50 | -1.69E-46 |
| MS.gene056605 | MS.gene27921 | 0.867687 | 1.14E-65 | -1.69E-46 |
| MS.gene05689 | MS.gene27921 | 0.844926 | 5.58E-59 | -1.69E-46 |
| MS.gene05953 | MS.gene27921 | 0.823349 | 1.45E-53 | -1.69E-46 |
| MS.gene05954 | MS.gene27921 | 0.818464 | 1.93E-52 | -1.69E-46 |
| MS.gene059830 | MS.gene27921 | 0.803377 | 3.59E-49 | -1.69E-46 |
| MS.gene059935 | MS.gene27921 | 0.853479 | 2.33E-61 | -1.69E-46 |
| MS.gene060830 | MS.gene27921 | 0.837045 | 6.55E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27921.t1 | MTR_8g088580 | 99.171 | 724 | 6 | 0 | 1 | 724 | 1 | 724 | 0.0 | 1460 |
| MS.gene27921.t1 | MTR_8g088580 | 99.002 | 501 | 5 | 0 | 1 | 501 | 1 | 501 | 0.0 | 1017 |
| MS.gene27921.t1 | MTR_7g080610 | 74.590 | 610 | 148 | 4 | 102 | 710 | 148 | 751 | 0.0 | 890 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27921.t1 | AT3G59820 | 65.952 | 746 | 211 | 8 | 1 | 710 | 1 | 739 | 0.0 | 916 |
| MS.gene27921.t1 | AT3G59820 | 65.952 | 746 | 211 | 8 | 1 | 710 | 1 | 739 | 0.0 | 916 |
| MS.gene27921.t1 | AT3G59820 | 65.952 | 746 | 211 | 8 | 1 | 710 | 1 | 739 | 0.0 | 916 |
| MS.gene27921.t1 | AT1G65540 | 68.370 | 724 | 209 | 9 | 1 | 710 | 1 | 718 | 0.0 | 911 |
| MS.gene27921.t1 | AT1G65540 | 68.370 | 724 | 209 | 9 | 1 | 710 | 1 | 718 | 0.0 | 911 |
| MS.gene27921.t1 | AT1G65540 | 68.370 | 724 | 209 | 9 | 1 | 710 | 1 | 718 | 0.0 | 911 |
| MS.gene27921.t1 | AT3G59820 | 65.894 | 733 | 207 | 8 | 1 | 697 | 1 | 726 | 0.0 | 894 |
Find 155 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCATTATTGTCCCCTTTA+TGG | 0.071436 | 4.1:+12030575 | MS.gene27921:CDS |
| TATCTCTAATGAGGAAATTT+TGG | 0.085322 | 4.1:+12031465 | MS.gene27921:CDS |
| CCTCCATCGGTCACCAATTT+TGG | 0.113720 | 4.1:-12035187 | None:intergenic |
| CTATTTCCTTCTCAAGATTT+TGG | 0.142617 | 4.1:-12035152 | None:intergenic |
| AGTGGAGGACATTGTTAAAT+TGG | 0.214201 | 4.1:+12037261 | MS.gene27921:CDS |
| TACAGGGCATTTATTGTGTC+TGG | 0.236234 | 4.1:+12032557 | MS.gene27921:intron |
| AAGATACATACCTTTATCTT+TGG | 0.242474 | 4.1:-12036800 | None:intergenic |
| GGCAGCTTTATATGCCTTAA+AGG | 0.246869 | 4.1:-12034954 | None:intergenic |
| GTATTCTGTAGTATTTCTTC+TGG | 0.263219 | 4.1:-12032590 | None:intergenic |
| CCATTTCTTTGACTGTATCT+TGG | 0.269248 | 4.1:-12031255 | None:intergenic |
| CATGTTGCCATCAACATTTC+AGG | 0.280059 | 4.1:+12030635 | MS.gene27921:CDS |
| CCTCTTGCCTGTGTTTCTTA+AGG | 0.280528 | 4.1:+12030602 | MS.gene27921:CDS |
| TTTACAAACGCGAGTAGTTC+CGG | 0.285868 | 4.1:+12029548 | MS.gene27921:CDS |
| TATCGACATTGAAGCATTAC+TGG | 0.288373 | 4.1:+12030406 | MS.gene27921:CDS |
| AAAGATTGCTGACGAGTTCT+TGG | 0.298022 | 4.1:-12036777 | None:intergenic |
| ACTTGCACATATTTACTAAT+CGG | 0.325175 | 4.1:-12031649 | None:intergenic |
| TGGTGACCGATGGAGGCTTC+TGG | 0.338350 | 4.1:+12035194 | MS.gene27921:CDS |
| CTCAGAAAGGAAGAGGAAAC+TGG | 0.351573 | 4.1:+12032682 | MS.gene27921:CDS |
| AGAGTGTTGTGCAAAGAGTT+AGG | 0.352785 | 4.1:+12029801 | MS.gene27921:CDS |
| TACATGGGTATCAATCCTTT+TGG | 0.356123 | 4.1:+12031671 | MS.gene27921:CDS |
| CTCGCTCTCTACAATCTTCC+CGG | 0.374609 | 4.1:-12032176 | None:intergenic |
| AATGCAGGAAGAACGTATTA+AGG | 0.374831 | 4.1:+12032715 | MS.gene27921:CDS |
| TGGTTTGCTGCAGAGCGGAC+TGG | 0.380888 | 4.1:+12030349 | MS.gene27921:intron |
| AGCAATCTTTCCAAAGATAA+AGG | 0.386791 | 4.1:+12036790 | MS.gene27921:CDS |
| ATAGTATCTACAAGCTCATC+AGG | 0.386914 | 4.1:-12032626 | None:intergenic |
| AACTACTCGCGTTTGTAAAT+CGG | 0.392469 | 4.1:-12029544 | None:intergenic |
| AGGCAAGAGGAATTCCATAA+AGG | 0.395244 | 4.1:-12030589 | None:intergenic |
| CTTGCACATATTTACTAATC+GGG | 0.395435 | 4.1:-12031648 | None:intergenic |
| ATCTTGTCCTGAAATGTTGA+TGG | 0.401604 | 4.1:-12030642 | None:intergenic |
| GAACTACTGCCGATATCTTT+AGG | 0.402854 | 4.1:+12030535 | MS.gene27921:CDS |
| GGCAAGAGGAATTCCATAAA+GGG | 0.403453 | 4.1:-12030588 | None:intergenic |
| GGTTTGCTGCAGAGCGGACT+GGG | 0.403638 | 4.1:+12030350 | MS.gene27921:intron |
| GATGACGTGGATGCCAAAAT+TGG | 0.415174 | 4.1:+12035174 | MS.gene27921:CDS |
| ATGTACTTGAAGAATACATT+GGG | 0.417521 | 4.1:+12036742 | MS.gene27921:CDS |
| TTCTATCGCTTCTGCAAAAG+AGG | 0.422196 | 4.1:+12029481 | MS.gene27921:CDS |
| ATGGGAAGAGTCTCTCTAGA+AGG | 0.422826 | 4.1:+12030493 | MS.gene27921:CDS |
| TTACAAACGCGAGTAGTTCC+GGG | 0.423277 | 4.1:+12029549 | MS.gene27921:CDS |
| TACGTTCTTCCTGCATTTCG+AGG | 0.428362 | 4.1:-12032709 | None:intergenic |
| CAGCATGCTCATGTTCCTCT+CGG | 0.431895 | 4.1:-12034976 | None:intergenic |
| TTGTTGTTGAAGCTTGCTAA+TGG | 0.433183 | 4.1:+12030474 | MS.gene27921:CDS |
| CCAAGATACAGTCAAAGAAA+TGG | 0.437590 | 4.1:+12031255 | MS.gene27921:CDS |
| ACATTGAAGCATTACTGGTT+GGG | 0.437850 | 4.1:+12030411 | MS.gene27921:CDS |
| TGTAGAGAGCGAGGCATGCT+TGG | 0.437936 | 4.1:+12032186 | MS.gene27921:CDS |
| TCTAAGACTAGTTAATAAAG+AGG | 0.440677 | 4.1:+12033402 | MS.gene27921:CDS |
| CACTTGTACAGCTTCGTGAT+TGG | 0.445592 | 4.1:+12032384 | MS.gene27921:intron |
| ACCGCTTGATCGCATTCCTC+AGG | 0.449324 | 4.1:-12029710 | None:intergenic |
| TGTTGAAGAAATGCGCCAAC+AGG | 0.449470 | 4.1:+12032218 | MS.gene27921:CDS |
| AATGTTGATGGCAACATGTT+GGG | 0.449916 | 4.1:-12030630 | None:intergenic |
| CTGATGTGAGAATCAGTTCC+AGG | 0.451647 | 4.1:+12030451 | MS.gene27921:CDS |
| CTCTTTCAGAAGCTGAACTC+CGG | 0.452885 | 4.1:+12032157 | MS.gene27921:CDS |
| AGTAAATATGTGCAAGTACA+TGG | 0.453397 | 4.1:+12031655 | MS.gene27921:CDS |
| TTACTCTAGATAATATAAAC+AGG | 0.454450 | 4.1:+12031515 | MS.gene27921:CDS |
| TTTCCAGTGAACAAGTTTGT+TGG | 0.455951 | 4.1:-12030373 | None:intergenic |
| GTGGAGGACATTGTTAAATT+GGG | 0.457674 | 4.1:+12037262 | MS.gene27921:CDS |
| ACAATAATGAAAACTGCAAC+GGG | 0.458839 | 4.1:-12030564 | None:intergenic |
| GGGCCAACAAACTTGTTCAC+TGG | 0.460815 | 4.1:+12030370 | MS.gene27921:CDS |
| GCAGCCGATGCTACCTCCTC+AGG | 0.474217 | 4.1:-12036718 | None:intergenic |
| AATTGAGACGGATTCTAGTC+AGG | 0.474888 | 4.1:+12033133 | MS.gene27921:CDS |
| TTCACCACATCATCATTCTC+CGG | 0.478985 | 4.1:-12029668 | None:intergenic |
| GTAGAGAGCGAGGCATGCTT+GGG | 0.482495 | 4.1:+12032187 | MS.gene27921:CDS |
| GGGAACTAGCCTAAAGATAT+CGG | 0.484803 | 4.1:-12030544 | None:intergenic |
| ACATTGTTAAATTGGGTGGT+TGG | 0.486119 | 4.1:+12037269 | MS.gene27921:CDS |
| TTTCTTTGACTGTATCTTGG+AGG | 0.486610 | 4.1:-12031252 | None:intergenic |
| GAAAGTATCAAAAGAGATGA+TGG | 0.489393 | 4.1:-12032434 | None:intergenic |
| TGTACAGCTTCGTGATTGGT+TGG | 0.490639 | 4.1:+12032388 | MS.gene27921:intron |
| TGCTGAGTCGGATGATGATC+GGG | 0.493905 | 4.1:+12034997 | MS.gene27921:CDS |
| TTTGTCGCAGTCGTCGGAGG+CGG | 0.496384 | 4.1:+12029622 | MS.gene27921:CDS |
| CCAAAATTGGTGACCGATGG+AGG | 0.496986 | 4.1:+12035187 | MS.gene27921:CDS |
| GACATTGAAGCATTACTGGT+TGG | 0.497405 | 4.1:+12030410 | MS.gene27921:CDS |
| GTCGGATGATGATCGGGATA+AGG | 0.497907 | 4.1:+12035003 | MS.gene27921:CDS |
| GGAGGAAGAAAAGGAGGAAG+CGG | 0.499313 | 4.1:+12033100 | MS.gene27921:CDS |
| TTGGGTGGTTGGAGAGAAGA+TGG | 0.499968 | 4.1:+12037280 | MS.gene27921:CDS |
| ACTGGAGTTCCTCGAAATGC+AGG | 0.505908 | 4.1:+12032700 | MS.gene27921:CDS |
| AAGAGTAACTCACCTGCTCA+TGG | 0.506497 | 4.1:-12029867 | None:intergenic |
| AATGCAGGAGGAGGAAGAAA+AGG | 0.507733 | 4.1:+12033091 | MS.gene27921:intron |
| AAGGAAACTCAAGGCAAGAA+TGG | 0.508572 | 4.1:+12031216 | MS.gene27921:CDS |
| GAGTGTTGTGCAAAGAGTTA+GGG | 0.510806 | 4.1:+12029802 | MS.gene27921:CDS |
| TCTTTCAGAAGCTGAACTCC+GGG | 0.510937 | 4.1:+12032158 | MS.gene27921:CDS |
| GCAGGAGGAGGAAGAAAAGG+AGG | 0.511863 | 4.1:+12033094 | MS.gene27921:intron |
| ACAGGGCATTTATTGTGTCT+GGG | 0.513234 | 4.1:+12032558 | MS.gene27921:intron |
| GAGCTGTTGCTTCCATGAGC+AGG | 0.514094 | 4.1:+12029855 | MS.gene27921:CDS |
| TCAGGACAAGATGAAAGAAC+AGG | 0.515017 | 4.1:+12030653 | MS.gene27921:CDS |
| TAACAGCATGGTAGAGAAAG+AGG | 0.517382 | 4.1:+12034910 | MS.gene27921:CDS |
| TGTTGTTGAAGCTTGCTAAT+GGG | 0.517520 | 4.1:+12030475 | MS.gene27921:CDS |
| ATGTGTAGGAAGCATTGAAA+AGG | 0.519613 | 4.1:+12031197 | MS.gene27921:intron |
| GAATGCGATCAAGCGGTTGA+AGG | 0.520729 | 4.1:+12029716 | MS.gene27921:CDS |
| GTTGTTGAGATATTGTTGAA+TGG | 0.524782 | 4.1:-12029423 | None:intergenic |
| AAGAATACATTGGGGAAAGA+AGG | 0.525245 | 4.1:+12036751 | MS.gene27921:CDS |
| ATATGCTACGAAAACGTCTA+CGG | 0.526988 | 4.1:+12031714 | MS.gene27921:CDS |
| AACTCCTGAGGAGGTAGCAT+CGG | 0.528151 | 4.1:+12036714 | MS.gene27921:CDS |
| GGTTGGGTTGTAAACTGCTG+TGG | 0.531809 | 4.1:+12030427 | MS.gene27921:CDS |
| AGCATGCTCATGTTCCTCTC+GGG | 0.534922 | 4.1:-12034975 | None:intergenic |
| CTGCTGAGTCGGATGATGAT+CGG | 0.537481 | 4.1:+12034996 | MS.gene27921:CDS |
| GGATTCTAGTCAGGAAGATA+AGG | 0.537717 | 4.1:+12033142 | MS.gene27921:CDS |
| AATGTACTTGAAGAATACAT+TGG | 0.538204 | 4.1:+12036741 | MS.gene27921:CDS |
| ATTCTGTCTCAGAAAGGAAG+AGG | 0.541428 | 4.1:+12032675 | MS.gene27921:CDS |
| ACCGATGGAGGCTTCTGGAT+AGG | 0.542405 | 4.1:+12035199 | MS.gene27921:CDS |
| GATAAATTGATTCAAGAAGA+AGG | 0.544669 | 4.1:+12032126 | MS.gene27921:CDS |
| GAATGAGATGAATATTTCAA+CGG | 0.545285 | 4.1:+12033169 | MS.gene27921:CDS |
| GAAGCAACAGCTCTCAAAGC+AGG | 0.551861 | 4.1:-12029845 | None:intergenic |
| AGGTATGCATCAGTTCCAAA+AGG | 0.557131 | 4.1:-12031686 | None:intergenic |
| TCTTGATGACTTTATAAACA+TGG | 0.559563 | 4.1:+12031330 | MS.gene27921:CDS |
| GAAGTTCAAAACTCCGGTAG+CGG | 0.560038 | 4.1:+12031283 | MS.gene27921:CDS |
| TCTTACTCTTTCTATGAGTG+CGG | 0.561533 | 4.1:-12035032 | None:intergenic |
| GGAGGCGGCTGCGAGGAAGA+AGG | 0.563995 | 4.1:+12029637 | MS.gene27921:CDS |
| GACAATAATGAAAACTGCAA+CGG | 0.564641 | 4.1:-12030565 | None:intergenic |
| AGGTTCAAGTATCTCTAATG+AGG | 0.566590 | 4.1:+12031456 | MS.gene27921:CDS |
| CTGAGGATTCTGTCTCAGAA+AGG | 0.573406 | 4.1:+12032669 | MS.gene27921:CDS |
| TCCTGAGGAATGCGATCAAG+CGG | 0.584092 | 4.1:+12029709 | MS.gene27921:CDS |
| GCAAAAGAAGTTCAAAACTC+CGG | 0.587527 | 4.1:+12031277 | MS.gene27921:CDS |
| AAATGTTGATGGCAACATGT+TGG | 0.589158 | 4.1:-12030631 | None:intergenic |
| GAGGAAGAAGGAAGAACCGC+CGG | 0.589226 | 4.1:+12029649 | MS.gene27921:CDS |
| TGGGAAGAGTCTCTCTAGAA+GGG | 0.590300 | 4.1:+12030494 | MS.gene27921:CDS |
| AACGCGAGTAGTTCCGGGAA+CGG | 0.591126 | 4.1:+12029554 | MS.gene27921:CDS |
| GTTGGGTTGTAAACTGCTGT+GGG | 0.591262 | 4.1:+12030428 | MS.gene27921:CDS |
| AGCAAGCTTCAACAACAACC+TGG | 0.603381 | 4.1:-12030469 | None:intergenic |
| GTAGAGAAAGAGGGTTCAGA+TGG | 0.604109 | 4.1:+12034920 | MS.gene27921:CDS |
| ACCTATCCAGAAGCCTCCAT+CGG | 0.606529 | 4.1:-12035200 | None:intergenic |
| ACATGAGCATGCTGCTGAGT+CGG | 0.607403 | 4.1:+12034985 | MS.gene27921:CDS |
| AAGCTAAAACAGCTAATGCA+CGG | 0.611370 | 4.1:-12033259 | None:intergenic |
| ATGCCAAAATTGGTGACCGA+TGG | 0.612310 | 4.1:+12035184 | MS.gene27921:CDS |
| AGTTACATCTTTACCCTCTG+AGG | 0.616464 | 4.1:+12032652 | MS.gene27921:CDS |
| GTAAATATGTGCAAGTACAT+GGG | 0.619345 | 4.1:+12031656 | MS.gene27921:CDS |
| AGATGGGAAAATACTAGTGG+AGG | 0.621840 | 4.1:+12037246 | MS.gene27921:intron |
| AACAGCATGGTAGAGAAAGA+GGG | 0.622654 | 4.1:+12034911 | MS.gene27921:CDS |
| ATGTTGATGGCAACATGTTG+GGG | 0.623860 | 4.1:-12030629 | None:intergenic |
| GGCATATAAAGCTGCCCGAG+AGG | 0.626226 | 4.1:+12034961 | MS.gene27921:CDS |
| AGCATTGAAAAGGAAACTCA+AGG | 0.627803 | 4.1:+12031207 | MS.gene27921:CDS |
| CCTTAAGAAACACAGGCAAG+AGG | 0.630225 | 4.1:-12030602 | None:intergenic |
| ACCACATCATCATTCTCCGG+CGG | 0.632226 | 4.1:-12029665 | None:intergenic |
| AGTCGTCGGAGGCGGCTGCG+AGG | 0.634076 | 4.1:+12029630 | MS.gene27921:CDS |
| TTGCACATATTTACTAATCG+GGG | 0.634159 | 4.1:-12031647 | None:intergenic |
| CATGCTCCAAAATCTTGAGA+AGG | 0.635162 | 4.1:+12035146 | MS.gene27921:CDS |
| GGAGCAAGCAAGAATTGAGA+CGG | 0.635821 | 4.1:+12033121 | MS.gene27921:CDS |
| GGGAACACCTTAAGAAACAC+AGG | 0.638644 | 4.1:-12030609 | None:intergenic |
| CGGGAAGATTGTAGAGAGCG+AGG | 0.638771 | 4.1:+12032177 | MS.gene27921:CDS |
| ATGATGATGTGGTGAAGAAG+CGG | 0.642157 | 4.1:+12029675 | MS.gene27921:CDS |
| GAGGACATTGTTAAATTGGG+TGG | 0.644188 | 4.1:+12037265 | MS.gene27921:CDS |
| TCTGAGACAGAATCCTCAGA+GGG | 0.647021 | 4.1:-12032665 | None:intergenic |
| TGAGAAGGAAATAGATGACG+TGG | 0.654193 | 4.1:+12035161 | MS.gene27921:CDS |
| TATAGATGGGAAAATACTAG+TGG | 0.658958 | 4.1:+12037243 | MS.gene27921:intron |
| GCAAGAGGAATTCCATAAAG+GGG | 0.659870 | 4.1:-12030587 | None:intergenic |
| GATAGAACTCTATAACAGCA+TGG | 0.663535 | 4.1:+12034898 | MS.gene27921:intron |
| TGGGAAAGTAACTCCTGAGG+AGG | 0.664864 | 4.1:+12036705 | MS.gene27921:CDS |
| GCGGAAAGAAGCTTCTCCTG+AGG | 0.666939 | 4.1:+12029694 | MS.gene27921:CDS |
| TCAATGAGTCGATTGGTGTG+AGG | 0.669320 | 4.1:+12029597 | MS.gene27921:CDS |
| TAGTATCTACAAGCTCATCA+GGG | 0.670531 | 4.1:-12032625 | None:intergenic |
| ACTTGCTAGAAACAGAGCAG+TGG | 0.672691 | 4.1:+12033208 | MS.gene27921:CDS |
| CTGAAGATGAAAGACCATGA+GGG | 0.676229 | 4.1:+12037311 | MS.gene27921:CDS |
| TTCTGAGACAGAATCCTCAG+AGG | 0.690870 | 4.1:-12032666 | None:intergenic |
| TGATGGGAAAGTAACTCCTG+AGG | 0.693943 | 4.1:+12036702 | MS.gene27921:CDS |
| GCTGAAGATGAAAGACCATG+AGG | 0.710087 | 4.1:+12037310 | MS.gene27921:CDS |
| ACCGCCGGAGAATGATGATG+TGG | 0.711056 | 4.1:+12029664 | MS.gene27921:CDS |
| TGTACTTGAAGAATACATTG+GGG | 0.711529 | 4.1:+12036743 | MS.gene27921:CDS |
| AATGTGTTCAATGAGTCGAT+TGG | 0.723049 | 4.1:+12029590 | MS.gene27921:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 12029383 | 12037330 | 12029383 | ID=MS.gene27921 |
| chr4.1 | mRNA | 12029383 | 12037330 | 12029383 | ID=MS.gene27921.t1;Parent=MS.gene27921 |
| chr4.1 | exon | 12029383 | 12029876 | 12029383 | ID=MS.gene27921.t1.exon1;Parent=MS.gene27921.t1 |
| chr4.1 | CDS | 12029383 | 12029876 | 12029383 | ID=cds.MS.gene27921.t1;Parent=MS.gene27921.t1 |
| chr4.1 | exon | 12030362 | 12030674 | 12030362 | ID=MS.gene27921.t1.exon2;Parent=MS.gene27921.t1 |
| chr4.1 | CDS | 12030362 | 12030674 | 12030362 | ID=cds.MS.gene27921.t1;Parent=MS.gene27921.t1 |
| chr4.1 | exon | 12031205 | 12031351 | 12031205 | ID=MS.gene27921.t1.exon3;Parent=MS.gene27921.t1 |
| chr4.1 | CDS | 12031205 | 12031351 | 12031205 | ID=cds.MS.gene27921.t1;Parent=MS.gene27921.t1 |
| chr4.1 | exon | 12031448 | 12031536 | 12031448 | ID=MS.gene27921.t1.exon4;Parent=MS.gene27921.t1 |
| chr4.1 | CDS | 12031448 | 12031536 | 12031448 | ID=cds.MS.gene27921.t1;Parent=MS.gene27921.t1 |
| chr4.1 | exon | 12031646 | 12031738 | 12031646 | ID=MS.gene27921.t1.exon5;Parent=MS.gene27921.t1 |
| chr4.1 | CDS | 12031646 | 12031738 | 12031646 | ID=cds.MS.gene27921.t1;Parent=MS.gene27921.t1 |
| chr4.1 | exon | 12032113 | 12032239 | 12032113 | ID=MS.gene27921.t1.exon6;Parent=MS.gene27921.t1 |
| chr4.1 | CDS | 12032113 | 12032239 | 12032113 | ID=cds.MS.gene27921.t1;Parent=MS.gene27921.t1 |
| chr4.1 | exon | 12032395 | 12032459 | 12032395 | ID=MS.gene27921.t1.exon7;Parent=MS.gene27921.t1 |
| chr4.1 | CDS | 12032395 | 12032459 | 12032395 | ID=cds.MS.gene27921.t1;Parent=MS.gene27921.t1 |
| chr4.1 | exon | 12032562 | 12032736 | 12032562 | ID=MS.gene27921.t1.exon8;Parent=MS.gene27921.t1 |
| chr4.1 | CDS | 12032562 | 12032736 | 12032562 | ID=cds.MS.gene27921.t1;Parent=MS.gene27921.t1 |
| chr4.1 | exon | 12033098 | 12033289 | 12033098 | ID=MS.gene27921.t1.exon9;Parent=MS.gene27921.t1 |
| chr4.1 | CDS | 12033098 | 12033289 | 12033098 | ID=cds.MS.gene27921.t1;Parent=MS.gene27921.t1 |
| chr4.1 | exon | 12033376 | 12033423 | 12033376 | ID=MS.gene27921.t1.exon10;Parent=MS.gene27921.t1 |
| chr4.1 | CDS | 12033376 | 12033423 | 12033376 | ID=cds.MS.gene27921.t1;Parent=MS.gene27921.t1 |
| chr4.1 | exon | 12034899 | 12035048 | 12034899 | ID=MS.gene27921.t1.exon11;Parent=MS.gene27921.t1 |
| chr4.1 | CDS | 12034899 | 12035048 | 12034899 | ID=cds.MS.gene27921.t1;Parent=MS.gene27921.t1 |
| chr4.1 | exon | 12035138 | 12035220 | 12035138 | ID=MS.gene27921.t1.exon12;Parent=MS.gene27921.t1 |
| chr4.1 | CDS | 12035138 | 12035220 | 12035138 | ID=cds.MS.gene27921.t1;Parent=MS.gene27921.t1 |
| chr4.1 | exon | 12036696 | 12036811 | 12036696 | ID=MS.gene27921.t1.exon13;Parent=MS.gene27921.t1 |
| chr4.1 | CDS | 12036696 | 12036811 | 12036696 | ID=cds.MS.gene27921.t1;Parent=MS.gene27921.t1 |
| chr4.1 | exon | 12037248 | 12037330 | 12037248 | ID=MS.gene27921.t1.exon14;Parent=MS.gene27921.t1 |
| chr4.1 | CDS | 12037248 | 12037330 | 12037248 | ID=cds.MS.gene27921.t1;Parent=MS.gene27921.t1 |
| Gene Sequence |
| Protein sequence |
