Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27971.t1 | XP_003630019.2 | 99.4 | 907 | 5 | 0 | 3 | 909 | 183 | 1089 | 0.00E+00 | 1801.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27971.t1 | Q6E7D1 | 89.1 | 908 | 98 | 1 | 3 | 909 | 188 | 1095 | 0.0e+00 | 1649.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27971.t1 | G7L9M1 | 99.4 | 907 | 5 | 0 | 3 | 909 | 183 | 1089 | 0.0e+00 | 1801.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049190 | MS.gene27971 | 0.870561 | 1.33E-66 | -1.69E-46 |
| MS.gene049404 | MS.gene27971 | 0.84629 | 2.38E-59 | -1.69E-46 |
| MS.gene049824 | MS.gene27971 | 0.820101 | 8.20E-53 | -1.69E-46 |
| MS.gene049850 | MS.gene27971 | 0.816516 | 5.31E-52 | -1.69E-46 |
| MS.gene050020 | MS.gene27971 | 0.807527 | 4.84E-50 | -1.69E-46 |
| MS.gene050119 | MS.gene27971 | 0.80953 | 1.81E-50 | -1.69E-46 |
| MS.gene05016 | MS.gene27971 | 0.814689 | 1.36E-51 | -1.69E-46 |
| MS.gene05157 | MS.gene27971 | 0.80372 | 3.05E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene27971 | 0.803798 | 2.94E-49 | -1.69E-46 |
| MS.gene051859 | MS.gene27971 | 0.824486 | 7.86E-54 | -1.69E-46 |
| MS.gene052020 | MS.gene27971 | 0.841873 | 3.65E-58 | -1.69E-46 |
| MS.gene052323 | MS.gene27971 | 0.825775 | 3.90E-54 | -1.69E-46 |
| MS.gene052516 | MS.gene27971 | 0.802852 | 4.61E-49 | -1.69E-46 |
| MS.gene052611 | MS.gene27971 | 0.859469 | 4.05E-63 | -1.69E-46 |
| MS.gene052612 | MS.gene27971 | 0.854606 | 1.10E-61 | -1.69E-46 |
| MS.gene052863 | MS.gene27971 | 0.802442 | 5.60E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene27971 | 0.842614 | 2.32E-58 | -1.69E-46 |
| MS.gene053998 | MS.gene27971 | 0.817597 | 3.04E-52 | -1.69E-46 |
| MS.gene05447 | MS.gene27971 | 0.810472 | 1.13E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene27971 | 0.817741 | 2.82E-52 | -1.69E-46 |
| MS.gene055512 | MS.gene27971 | 0.847072 | 1.46E-59 | -1.69E-46 |
| MS.gene056050 | MS.gene27971 | 0.809579 | 1.76E-50 | -1.69E-46 |
| MS.gene056173 | MS.gene27971 | 0.849815 | 2.54E-60 | -1.69E-46 |
| MS.gene056366 | MS.gene27971 | 0.822253 | 2.62E-53 | -1.69E-46 |
| MS.gene056553 | MS.gene27971 | 0.823335 | 1.46E-53 | -1.69E-46 |
| MS.gene056643 | MS.gene27971 | 0.806489 | 8.02E-50 | -1.69E-46 |
| MS.gene057060 | MS.gene27971 | 0.814486 | 1.50E-51 | -1.69E-46 |
| MS.gene057869 | MS.gene27971 | 0.807712 | 4.42E-50 | -1.69E-46 |
| MS.gene058625 | MS.gene27971 | 0.824739 | 6.86E-54 | -1.69E-46 |
| MS.gene058829 | MS.gene27971 | 0.817665 | 2.93E-52 | -1.69E-46 |
| MS.gene058979 | MS.gene27971 | 0.808508 | 2.99E-50 | -1.69E-46 |
| MS.gene059154 | MS.gene27971 | 0.830584 | 2.70E-55 | -1.69E-46 |
| MS.gene05978 | MS.gene27971 | 0.829156 | 6.03E-55 | -1.69E-46 |
| MS.gene060355 | MS.gene27971 | 0.806721 | 7.17E-50 | -1.69E-46 |
| MS.gene060587 | MS.gene27971 | 0.84469 | 6.47E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27971.t1 | MTR_8g089380 | 99.449 | 907 | 5 | 0 | 3 | 909 | 183 | 1089 | 0.0 | 1855 |
| MS.gene27971.t1 | MTR_1g115525 | 23.907 | 1029 | 618 | 31 | 1 | 905 | 198 | 1185 | 4.31e-57 | 214 |
| MS.gene27971.t1 | MTR_4g115810 | 23.282 | 1048 | 633 | 32 | 1 | 905 | 201 | 1220 | 1.54e-53 | 203 |
| MS.gene27971.t1 | MTR_4g115500 | 22.762 | 1050 | 636 | 34 | 1 | 905 | 201 | 1220 | 2.41e-51 | 196 |
| MS.gene27971.t1 | MTR_6g013290 | 23.605 | 699 | 459 | 22 | 251 | 904 | 30 | 698 | 1.30e-32 | 135 |
| MS.gene27971.t1 | MTR_7g107350 | 21.792 | 491 | 292 | 16 | 141 | 549 | 441 | 921 | 1.06e-20 | 99.0 |
| MS.gene27971.t1 | MTR_7g107350 | 21.792 | 491 | 292 | 16 | 141 | 549 | 441 | 921 | 1.49e-20 | 98.6 |
| MS.gene27971.t1 | MTR_7g107350 | 21.792 | 491 | 292 | 16 | 141 | 549 | 267 | 747 | 1.53e-20 | 98.2 |
| MS.gene27971.t1 | MTR_7g107350 | 21.792 | 491 | 292 | 16 | 141 | 549 | 441 | 921 | 1.64e-20 | 98.2 |
| MS.gene27971.t1 | MTR_6g461810 | 28.622 | 283 | 172 | 9 | 598 | 860 | 1122 | 1394 | 8.38e-17 | 86.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27971.t1 | AT4G05420 | 88.975 | 907 | 99 | 1 | 3 | 909 | 162 | 1067 | 0.0 | 1667 |
| MS.gene27971.t1 | AT4G05420 | 88.975 | 907 | 99 | 1 | 3 | 909 | 183 | 1088 | 0.0 | 1664 |
| MS.gene27971.t1 | AT4G21100 | 86.549 | 907 | 121 | 1 | 3 | 909 | 183 | 1088 | 0.0 | 1620 |
| MS.gene27971.t1 | AT3G55220 | 23.664 | 1048 | 617 | 35 | 2 | 904 | 199 | 1208 | 9.42e-60 | 222 |
| MS.gene27971.t1 | AT3G55200 | 23.664 | 1048 | 617 | 35 | 2 | 904 | 199 | 1208 | 9.42e-60 | 222 |
| MS.gene27971.t1 | AT3G55200 | 23.664 | 1048 | 617 | 35 | 2 | 904 | 199 | 1208 | 9.42e-60 | 222 |
| MS.gene27971.t1 | AT3G55200 | 23.664 | 1048 | 617 | 35 | 2 | 904 | 199 | 1208 | 9.42e-60 | 222 |
| MS.gene27971.t1 | AT3G11960 | 21.453 | 592 | 360 | 20 | 126 | 630 | 433 | 1006 | 2.21e-25 | 114 |
| MS.gene27971.t1 | AT3G11960 | 21.453 | 592 | 360 | 20 | 126 | 630 | 375 | 948 | 2.31e-25 | 114 |
| MS.gene27971.t1 | AT3G11960 | 21.453 | 592 | 360 | 20 | 126 | 630 | 433 | 1006 | 2.36e-25 | 114 |
| MS.gene27971.t1 | AT3G11960 | 21.453 | 592 | 360 | 20 | 126 | 630 | 433 | 1006 | 2.36e-25 | 114 |
| MS.gene27971.t1 | AT5G51660 | 25.753 | 299 | 190 | 9 | 582 | 861 | 1104 | 1389 | 3.34e-14 | 77.8 |
Find 196 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACTTGACACTTATGAATA+TGG | 0.189610 | 4.4:+11887075 | MS.gene27971:CDS |
| CTTGGAAAGGTATGTCAATT+TGG | 0.198188 | 4.4:+11883359 | MS.gene27971:CDS |
| CAGATTCCAACTGTTATATT+TGG | 0.208983 | 4.4:+11888027 | MS.gene27971:CDS |
| CTCTGTGGTGTGCTTATTAT+TGG | 0.209216 | 4.4:+11881972 | MS.gene27971:CDS |
| GTTATATTTGGCACCATTAA+TGG | 0.212435 | 4.4:+11888039 | MS.gene27971:CDS |
| GGCACCATTAATGGTGTTAT+TGG | 0.214754 | 4.4:+11888048 | MS.gene27971:CDS |
| TACTGCTTGAACGCGTTTAA+TGG | 0.225069 | 4.4:+11887364 | MS.gene27971:CDS |
| CACTTGGTTTACCTCGAAAT+TGG | 0.228300 | 4.4:+11885852 | MS.gene27971:CDS |
| GATAATGCATTTGTTTATAT+TGG | 0.258019 | 4.4:+11882498 | MS.gene27971:CDS |
| TACCCCAATAACACCATTAA+TGG | 0.267127 | 4.4:-11888052 | None:intergenic |
| GCACCATTAATGGTGTTATT+GGG | 0.269623 | 4.4:+11888049 | MS.gene27971:CDS |
| AACATATGAGGTTGCTCTTA+AGG | 0.276914 | 4.4:+11881869 | MS.gene27971:CDS |
| TTGGAAAGGTATGTCAATTT+GGG | 0.293780 | 4.4:+11883360 | MS.gene27971:CDS |
| CATCTCCTTGTTAATCTATA+AGG | 0.308733 | 4.4:+11887552 | MS.gene27971:CDS |
| GCTCCTTTGTGATGAGATTA+AGG | 0.312120 | 4.4:-11886028 | None:intergenic |
| CACAAAACAGTCTTGATAAT+GGG | 0.332240 | 4.4:+11881919 | MS.gene27971:CDS |
| ACGGTGCATGCCACTCATTC+AGG | 0.339662 | 4.4:-11884801 | None:intergenic |
| GTCTCAAAATAGAGCCCCTT+GGG | 0.342415 | 4.4:+11882442 | MS.gene27971:CDS |
| GTTCTTCTTTGTGCGTTTGA+AGG | 0.343825 | 4.4:+11886080 | MS.gene27971:CDS |
| GACCTTGGCCTTGCCTTTCA+AGG | 0.350635 | 4.4:-11883410 | None:intergenic |
| GAGAAAGTCCGTAGAGTAAT+AGG | 0.354675 | 4.4:-11886561 | None:intergenic |
| CTCGGGACTATAATGCAAAT+TGG | 0.363149 | 4.4:+11887797 | MS.gene27971:CDS |
| CAAATATAACAGTTGGAATC+TGG | 0.372665 | 4.4:-11888026 | None:intergenic |
| TCACAAAACAGTCTTGATAA+TGG | 0.375104 | 4.4:+11881918 | MS.gene27971:CDS |
| CTCATCACAAAGGAGCATTT+AGG | 0.375598 | 4.4:+11886035 | MS.gene27971:CDS |
| GGCTACAGGTGGTGGGCACT+TGG | 0.378105 | 4.4:+11885836 | MS.gene27971:CDS |
| CATATTCGCACTATTCCATT+GGG | 0.381367 | 4.4:+11886904 | MS.gene27971:CDS |
| TTCTTCTTTGTGCGTTTGAA+GGG | 0.385679 | 4.4:+11886081 | MS.gene27971:CDS |
| ATTAGCACTGCAGTATACTA+TGG | 0.389127 | 4.4:-11882003 | None:intergenic |
| AACTTGAGGAAGGTGATTAA+AGG | 0.390385 | 4.4:+11888126 | MS.gene27971:CDS |
| GAGAGTTTATCAATCGGTTT+CGG | 0.391578 | 4.4:+11887962 | MS.gene27971:CDS |
| AAATACATGGGTAGTATTCT+TGG | 0.396304 | 4.4:-11886586 | None:intergenic |
| AGCTGTACAAGTGGGTGCTC+CGG | 0.397163 | 4.4:+11887419 | MS.gene27971:CDS |
| ATCTGGCCTACGTCGGAATC+TGG | 0.399624 | 4.4:-11888009 | None:intergenic |
| CGTGTTGTTCGTAATGGAAT+AGG | 0.401088 | 4.4:+11883474 | MS.gene27971:CDS |
| ATTTAACATACAGCTCTGAT+TGG | 0.401669 | 4.4:-11882041 | None:intergenic |
| TGCTGCTAGCTGACTCTGAT+TGG | 0.409702 | 4.4:-11885958 | None:intergenic |
| ATAGTATACTGCAGTGCTAA+TGG | 0.414262 | 4.4:+11882005 | MS.gene27971:CDS |
| AGGCGCCACTGATGAAGAAC+GGG | 0.416102 | 4.4:+11887906 | MS.gene27971:CDS |
| TATTTACTTGGTGACCATAC+AGG | 0.421469 | 4.4:+11882225 | MS.gene27971:CDS |
| GGTCAGGTTGTGACTTGCTC+TGG | 0.421885 | 4.4:+11883429 | MS.gene27971:CDS |
| AGAAGTAAAGCATGCCCAAC+TGG | 0.424429 | 4.4:+11885890 | MS.gene27971:CDS |
| CGAGTTAACAGATAGGAAAA+AGG | 0.425998 | 4.4:+11886521 | MS.gene27971:CDS |
| CACCAATGGGATTAATGTCT+AGG | 0.426916 | 4.4:-11885929 | None:intergenic |
| ATTTATCAATTTACCTTGGT+TGG | 0.430696 | 4.4:-11887186 | None:intergenic |
| TCATATTCGCACTATTCCAT+TGG | 0.434143 | 4.4:+11886903 | MS.gene27971:CDS |
| ATTCACGAGTACCGTCTTCC+CGG | 0.436927 | 4.4:-11887438 | None:intergenic |
| CCACTCATTCAGGAGCTCTC+TGG | 0.439072 | 4.4:-11884791 | None:intergenic |
| TCCCTACGTGTTGTTCGTAA+TGG | 0.439345 | 4.4:+11883468 | MS.gene27971:CDS |
| GTTTATATTGGTTCAAGCTA+TGG | 0.441908 | 4.4:+11882510 | MS.gene27971:CDS |
| ATTCAGGAGCTCTCTGGTTG+TGG | 0.450481 | 4.4:-11884785 | None:intergenic |
| TGGAATAGGTATCAATGAAC+AGG | 0.450725 | 4.4:+11883488 | MS.gene27971:CDS |
| AACTGAAACTTCCATCGCCT+TGG | 0.450793 | 4.4:-11888283 | None:intergenic |
| TGGACACCACGGGCACATAC+TGG | 0.458407 | 4.4:+11887474 | MS.gene27971:CDS |
| CTGATATGAAGTCAAAAGTC+TGG | 0.460000 | 4.4:-11887047 | None:intergenic |
| CAGGCAATTACAAAAGCCTA+TGG | 0.460282 | 4.4:+11882177 | MS.gene27971:intron |
| TTGCTATGTGCCCTTGGTGA+TGG | 0.460806 | 4.4:+11886462 | MS.gene27971:CDS |
| GTGCCCGTGGTGTCCACATT+CGG | 0.461850 | 4.4:-11887467 | None:intergenic |
| TCTTACTTGCTATGTGCCCT+TGG | 0.462622 | 4.4:+11886456 | MS.gene27971:CDS |
| GACTTGCTCTGGAGCTTACA+AGG | 0.466419 | 4.4:+11883440 | MS.gene27971:CDS |
| GGTCAGATGCAGCAAATACA+TGG | 0.476544 | 4.4:-11886599 | None:intergenic |
| AAAGAAGGTGAGCTTACTAT+TGG | 0.478013 | 4.4:+11886856 | MS.gene27971:CDS |
| AATCTTCAGCCTGATTCAAA+AGG | 0.479108 | 4.4:+11883321 | MS.gene27971:CDS |
| AGTCAACTCTTCTACTCTCT+TGG | 0.479215 | 4.4:-11888316 | None:intergenic |
| CCGTCATGTTAAAACATATG+AGG | 0.485421 | 4.4:+11881857 | MS.gene27971:CDS |
| AGGTTCTTATGTGGAAGTCT+TGG | 0.486834 | 4.4:+11883341 | MS.gene27971:CDS |
| TGGGGCTGATTTATTGATAC+CGG | 0.489580 | 4.4:+11881938 | MS.gene27971:CDS |
| GTAGACTAAGCAACCCTGTA+TGG | 0.490396 | 4.4:-11882239 | None:intergenic |
| GCATGAGGAAGGTGCTATTG+AGG | 0.491604 | 4.4:+11887768 | MS.gene27971:intron |
| GCTGTACAAGTGGGTGCTCC+GGG | 0.493964 | 4.4:+11887420 | MS.gene27971:CDS |
| TGCACGGCGGATATGTCATC+AGG | 0.497183 | 4.4:+11886933 | MS.gene27971:CDS |
| GATGGTTCTAGATATTTACT+TGG | 0.497991 | 4.4:+11882213 | MS.gene27971:CDS |
| GTGCTATTGAGGAGAGAGCT+CGG | 0.499902 | 4.4:+11887779 | MS.gene27971:CDS |
| CTGGAAGAAACTGAGATTGA+GGG | 0.502406 | 4.4:+11883783 | MS.gene27971:CDS |
| AAATCAAACCTGGGTTGCAT+TGG | 0.503640 | 4.4:-11884851 | None:intergenic |
| TGATCTCAAACGCAGTAAGA+TGG | 0.507168 | 4.4:+11888251 | MS.gene27971:CDS |
| GCTGCTAGCTGACTCTGATT+GGG | 0.509055 | 4.4:-11885957 | None:intergenic |
| TGCCTAGACATTAATCCCAT+TGG | 0.509950 | 4.4:+11885927 | MS.gene27971:CDS |
| CACTTATAAAACTTACAACC+AGG | 0.512183 | 4.4:-11883725 | None:intergenic |
| GAAAAGCAGCAGAGTTGAAA+GGG | 0.512702 | 4.4:-11886698 | None:intergenic |
| TATAAACAAATGCATTATCA+AGG | 0.513605 | 4.4:-11882494 | None:intergenic |
| AGGAAGGTGATTAAAGGCGT+TGG | 0.513962 | 4.4:+11888132 | MS.gene27971:CDS |
| TTACTACTATAAATCACAGT+TGG | 0.517519 | 4.4:-11886624 | None:intergenic |
| TATGTCATCAGGAGCAAACT+AGG | 0.520708 | 4.4:+11886944 | MS.gene27971:CDS |
| TGAAAGGCAAGGCCAAGGTC+AGG | 0.521844 | 4.4:+11883413 | MS.gene27971:CDS |
| ATGAGATTTCATACTCCAGT+TGG | 0.522760 | 4.4:-11885905 | None:intergenic |
| GCTGGAAGAAACTGAGATTG+AGG | 0.523648 | 4.4:+11883782 | MS.gene27971:CDS |
| ATGTATTTGCTGCATCTGAC+CGG | 0.524765 | 4.4:+11886601 | MS.gene27971:CDS |
| CACCATTAATGGTGTTATTG+GGG | 0.526170 | 4.4:+11888050 | MS.gene27971:CDS |
| ATGGTGCCAAATATAACAGT+TGG | 0.526265 | 4.4:-11888033 | None:intergenic |
| TGAGATTTCATACTCCAGTT+GGG | 0.526292 | 4.4:-11885904 | None:intergenic |
| ACCTTGGAGAGTTTATCAAT+CGG | 0.530210 | 4.4:+11887956 | MS.gene27971:CDS |
| CAGAGTCAGCTAGCAGCAGT+TGG | 0.530439 | 4.4:+11885963 | MS.gene27971:CDS |
| TGCTATTGAGGAGAGAGCTC+GGG | 0.534621 | 4.4:+11887780 | MS.gene27971:CDS |
| TTCAAGCTATGGAGATTCAC+AGG | 0.534786 | 4.4:+11882521 | MS.gene27971:CDS |
| GGATGAGATTTCCAAGGCGA+TGG | 0.534862 | 4.4:+11888272 | MS.gene27971:CDS |
| AGTAAATATCTAGAACCATC+GGG | 0.535099 | 4.4:-11882210 | None:intergenic |
| GCACGGGCGAGTTAACAGAT+AGG | 0.538982 | 4.4:+11886514 | MS.gene27971:CDS |
| TTATAGTAATGTTAATCTGA+AGG | 0.539122 | 4.4:+11886659 | MS.gene27971:CDS |
| TGATTCAAAAGGTTCTTATG+TGG | 0.540128 | 4.4:+11883332 | MS.gene27971:CDS |
| TACTATAAATCACAGTTGGC+CGG | 0.540250 | 4.4:-11886620 | None:intergenic |
| CTTATAGATTAACAAGGAGA+TGG | 0.540637 | 4.4:-11887551 | None:intergenic |
| TAGGCATCAGTAGAACTTCA+AGG | 0.541758 | 4.4:+11883648 | MS.gene27971:intron |
| CGGGGTCGTCTTGAAGTGGC+TGG | 0.542845 | 4.4:+11887925 | MS.gene27971:CDS |
| TGCTCTGGAGCTTACAAGGA+TGG | 0.543423 | 4.4:+11883444 | MS.gene27971:CDS |
| GGTCTCAAAATAGAGCCCCT+TGG | 0.545517 | 4.4:+11882441 | MS.gene27971:CDS |
| ACAACCAGGAAAGTGTCAAA+AGG | 0.545952 | 4.4:-11883711 | None:intergenic |
| AATGAATCTCGAGGATGAGC+TGG | 0.549604 | 4.4:+11883764 | MS.gene27971:CDS |
| AGTTTAGCGATTGCAAAAGA+AGG | 0.550027 | 4.4:+11886841 | MS.gene27971:intron |
| AGCACACCACAGAGTGGTGG+GGG | 0.551042 | 4.4:-11881963 | None:intergenic |
| AGAAGCTTCAGTCAAACTTG+AGG | 0.552351 | 4.4:+11888112 | MS.gene27971:CDS |
| GTTTACCTCGAAATTGGAGA+TGG | 0.552837 | 4.4:+11885858 | MS.gene27971:CDS |
| GTAGAACTTCAAGGTATCAA+AGG | 0.553027 | 4.4:+11883657 | MS.gene27971:CDS |
| AGCAAGTCACAACCTGACCT+TGG | 0.554672 | 4.4:-11883425 | None:intergenic |
| AAGGTGATTAAAGGCGTTGG+AGG | 0.556474 | 4.4:+11888135 | MS.gene27971:CDS |
| GAGGACTCAGCCACGAGCAG+TGG | 0.559645 | 4.4:+11888154 | MS.gene27971:CDS |
| AAGTAAATATCTAGAACCAT+CGG | 0.560049 | 4.4:-11882211 | None:intergenic |
| GGAAAAGCAGCAGAGTTGAA+AGG | 0.560752 | 4.4:-11886699 | None:intergenic |
| ATATACCATCTCCAATTTCG+AGG | 0.562164 | 4.4:-11885863 | None:intergenic |
| GTATGAAATCGTAGATGCAA+TGG | 0.563213 | 4.4:-11882472 | None:intergenic |
| CACGTTATTATCATCTGAGA+AGG | 0.563580 | 4.4:-11887118 | None:intergenic |
| AGTCCGAATGTGGACACCAC+GGG | 0.565397 | 4.4:+11887464 | MS.gene27971:CDS |
| TCAACATAAAGTTTAAGAGA+TGG | 0.567060 | 4.4:-11886485 | None:intergenic |
| TAAGCACACCACAGAGTGGT+GGG | 0.568719 | 4.4:-11881965 | None:intergenic |
| GAACACAACCTATTACTCTA+CGG | 0.569345 | 4.4:+11886553 | MS.gene27971:CDS |
| ATTTACTTGGTGACCATACA+GGG | 0.570110 | 4.4:+11882226 | MS.gene27971:CDS |
| GTTGCCGAGAAAGAGACAAA+AGG | 0.576433 | 4.4:+11887334 | MS.gene27971:CDS |
| TCTGTGTGGTAGACCTTGAA+AGG | 0.576761 | 4.4:+11883397 | MS.gene27971:CDS |
| AGCTAGCAGCAGTTGGAATG+TGG | 0.579983 | 4.4:+11885970 | MS.gene27971:CDS |
| AGAGAGTAGAAGAGTTGACT+AGG | 0.582187 | 4.4:+11888319 | MS.gene27971:CDS |
| TCCATTACGAACAACACGTA+GGG | 0.584653 | 4.4:-11883469 | None:intergenic |
| ACCGATTGATAAACTCTCCA+AGG | 0.587479 | 4.4:-11887957 | None:intergenic |
| TTTATCAATCGGTTTCGGCA+TGG | 0.590347 | 4.4:+11887967 | MS.gene27971:CDS |
| AATAACGTGTATTACTGTGT+TGG | 0.590857 | 4.4:+11887132 | MS.gene27971:CDS |
| AGCTACTGCCAATGCAACCC+AGG | 0.591282 | 4.4:+11884843 | MS.gene27971:CDS |
| CCAGAGAGCTCCTGAATGAG+TGG | 0.591702 | 4.4:+11884791 | MS.gene27971:CDS |
| AAAAGATTCAGCTGTACAAG+TGG | 0.592478 | 4.4:+11887410 | MS.gene27971:CDS |
| TATTCGCACTATTCCATTGG+GGG | 0.593012 | 4.4:+11886906 | MS.gene27971:CDS |
| CCATATTCATAAGTGTCAAG+TGG | 0.594109 | 4.4:-11887075 | None:intergenic |
| TGCAATGGAAGTCTCCCCAA+GGG | 0.594926 | 4.4:-11882457 | None:intergenic |
| TTTGTGATGAGATTAAGGTC+AGG | 0.595391 | 4.4:-11886023 | None:intergenic |
| AAGAATACATACTGCTCATG+AGG | 0.595780 | 4.4:-11888087 | None:intergenic |
| AAGTGGGTGCTCCGGGAAGA+CGG | 0.597239 | 4.4:+11887427 | MS.gene27971:CDS |
| AAGGCGCCACTGATGAAGAA+CGG | 0.598090 | 4.4:+11887905 | MS.gene27971:CDS |
| TCTTCTTTGTGCGTTTGAAG+GGG | 0.600024 | 4.4:+11886082 | MS.gene27971:CDS |
| GTCAAAAGGATCATCTGTTG+AGG | 0.600103 | 4.4:-11883697 | None:intergenic |
| CTTTATGTTGAACACAAGCA+CGG | 0.604008 | 4.4:+11886497 | MS.gene27971:CDS |
| CGTGAATTACAGTCCGAATG+TGG | 0.606634 | 4.4:+11887454 | MS.gene27971:CDS |
| GCTTTATATGTGCAAACTAG+AGG | 0.606872 | 4.4:+11887496 | MS.gene27971:CDS |
| ATCACAAAGGAGCATTTAGG+AGG | 0.610354 | 4.4:+11886038 | MS.gene27971:CDS |
| ATCGGGATCAACTCTTCCAT+AGG | 0.610920 | 4.4:-11882193 | None:intergenic |
| CTCGATGATGATGTATACCT+TGG | 0.611867 | 4.4:+11887838 | MS.gene27971:CDS |
| TTTATGTTGAACACAAGCAC+GGG | 0.617201 | 4.4:+11886498 | MS.gene27971:CDS |
| TAAGAGATGGCCATCACCAA+GGG | 0.617601 | 4.4:-11886472 | None:intergenic |
| TGGAAAGGTATGTCAATTTG+GGG | 0.619303 | 4.4:+11883361 | MS.gene27971:CDS |
| GGCGATGGAAGTTTCAGTTG+AGG | 0.620659 | 4.4:+11888287 | MS.gene27971:CDS |
| CTTATGTGGAAGTCTTGGAA+AGG | 0.622163 | 4.4:+11883346 | MS.gene27971:CDS |
| GACCTTGAAAGGCAAGGCCA+AGG | 0.622215 | 4.4:+11883408 | MS.gene27971:CDS |
| GTGGTAGACCTTGAAAGGCA+AGG | 0.626438 | 4.4:+11883402 | MS.gene27971:CDS |
| ACAAAACAGTCTTGATAATG+GGG | 0.628269 | 4.4:+11881920 | MS.gene27971:CDS |
| AATATTAGCAATGAATCTCG+AGG | 0.628669 | 4.4:+11883755 | MS.gene27971:CDS |
| AGAACGGGGTCGTCTTGAAG+TGG | 0.628760 | 4.4:+11887921 | MS.gene27971:CDS |
| GCTTCAGTCAAACTTGAGGA+AGG | 0.634483 | 4.4:+11888116 | MS.gene27971:CDS |
| GTTGATTGTGAACTGCATCA+TGG | 0.634822 | 4.4:-11883836 | None:intergenic |
| TAAATGATCTCCACTGCTCG+TGG | 0.635705 | 4.4:-11888164 | None:intergenic |
| ATAAGCACACCACAGAGTGG+TGG | 0.635800 | 4.4:-11881966 | None:intergenic |
| AAGTCTGGTCATCCAGCAAG+CGG | 0.636118 | 4.4:-11887032 | None:intergenic |
| ATACTGCTCATGAGGAAGAG+AGG | 0.637193 | 4.4:-11888079 | None:intergenic |
| ACGACCCCGTTCTTCATCAG+TGG | 0.639453 | 4.4:-11887911 | None:intergenic |
| TTAAGAGATGGCCATCACCA+AGG | 0.643603 | 4.4:-11886473 | None:intergenic |
| ATATTCGCACTATTCCATTG+GGG | 0.646014 | 4.4:+11886905 | MS.gene27971:CDS |
| TAAGATGGATGAGATTTCCA+AGG | 0.648525 | 4.4:+11888266 | MS.gene27971:CDS |
| TTCAAGGTATCAAAGGAATG+TGG | 0.648680 | 4.4:+11883664 | MS.gene27971:CDS |
| AAAGATTCAGCTGTACAAGT+GGG | 0.651626 | 4.4:+11887411 | MS.gene27971:CDS |
| ATGCAATGGAAGTCTCCCCA+AGG | 0.653448 | 4.4:-11882458 | None:intergenic |
| GTCAGATGCAGCAAATACAT+GGG | 0.655484 | 4.4:-11886598 | None:intergenic |
| TATGGAAGAGTTGATCCCGA+TGG | 0.657170 | 4.4:+11882195 | MS.gene27971:CDS |
| ACATTTACTGAATAGTCTGA+CGG | 0.659621 | 4.4:-11884820 | None:intergenic |
| AAGCACACCACAGAGTGGTG+GGG | 0.659719 | 4.4:-11881964 | None:intergenic |
| ATAAAGCCAGTATGTGCCCG+TGG | 0.667188 | 4.4:-11887480 | None:intergenic |
| CGCTTGCCAGATTCCGACGT+AGG | 0.669993 | 4.4:+11888003 | MS.gene27971:CDS |
| TGAGGAAAATGAACCAACCA+AGG | 0.671084 | 4.4:+11887173 | MS.gene27971:CDS |
| GTGGCTGGTGAGTATCACCT+TGG | 0.674283 | 4.4:+11887940 | MS.gene27971:CDS |
| ACTTACCTTATAGATTAACA+AGG | 0.677737 | 4.4:-11887557 | None:intergenic |
| AGTTGGAATCTGGCCTACGT+CGG | 0.682964 | 4.4:-11888016 | None:intergenic |
| GCTCATTGTTGACTTCTGTG+TGG | 0.683408 | 4.4:+11883383 | MS.gene27971:CDS |
| TGACCTTAATCTCATCACAA+AGG | 0.685342 | 4.4:+11886025 | MS.gene27971:CDS |
| CAGTCCGAATGTGGACACCA+CGG | 0.701088 | 4.4:+11887463 | MS.gene27971:CDS |
| GCACAAAGAAGAACAGATCG+AGG | 0.713582 | 4.4:-11886071 | None:intergenic |
| GCAATGGAAGTCTCCCCAAG+GGG | 0.729886 | 4.4:-11882456 | None:intergenic |
| TTCCATTACGAACAACACGT+AGG | 0.739243 | 4.4:-11883470 | None:intergenic |
| AACTGCATATGTATTGCCTG+AGG | 0.740158 | 4.4:+11887155 | MS.gene27971:CDS |
| TCTCAAAATAGAGCCCCTTG+GGG | 0.740613 | 4.4:+11882443 | MS.gene27971:CDS |
| ATAATAAGCACACCACAGAG+TGG | 0.754539 | 4.4:-11881969 | None:intergenic |
| GGCGCCACTGATGAAGAACG+GGG | 0.758258 | 4.4:+11887907 | MS.gene27971:CDS |
| CAAGGTATACATCATCATCG+AGG | 0.761046 | 4.4:-11887837 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 11881325 | 11888350 | 11881325 | ID=MS.gene27971 |
| chr4.4 | mRNA | 11881325 | 11888350 | 11881325 | ID=MS.gene27971.t1;Parent=MS.gene27971 |
| chr4.4 | exon | 11881325 | 11881330 | 11881325 | ID=MS.gene27971.t1.exon1;Parent=MS.gene27971.t1 |
| chr4.4 | CDS | 11881325 | 11881330 | 11881325 | ID=cds.MS.gene27971.t1;Parent=MS.gene27971.t1 |
| chr4.4 | exon | 11881843 | 11882052 | 11881843 | ID=MS.gene27971.t1.exon2;Parent=MS.gene27971.t1 |
| chr4.4 | CDS | 11881843 | 11882052 | 11881843 | ID=cds.MS.gene27971.t1;Parent=MS.gene27971.t1 |
| chr4.4 | exon | 11882180 | 11882286 | 11882180 | ID=MS.gene27971.t1.exon3;Parent=MS.gene27971.t1 |
| chr4.4 | CDS | 11882180 | 11882286 | 11882180 | ID=cds.MS.gene27971.t1;Parent=MS.gene27971.t1 |
| chr4.4 | exon | 11882434 | 11882542 | 11882434 | ID=MS.gene27971.t1.exon4;Parent=MS.gene27971.t1 |
| chr4.4 | CDS | 11882434 | 11882542 | 11882434 | ID=cds.MS.gene27971.t1;Parent=MS.gene27971.t1 |
| chr4.4 | exon | 11883309 | 11883509 | 11883309 | ID=MS.gene27971.t1.exon5;Parent=MS.gene27971.t1 |
| chr4.4 | CDS | 11883309 | 11883509 | 11883309 | ID=cds.MS.gene27971.t1;Parent=MS.gene27971.t1 |
| chr4.4 | exon | 11883651 | 11883866 | 11883651 | ID=MS.gene27971.t1.exon6;Parent=MS.gene27971.t1 |
| chr4.4 | CDS | 11883651 | 11883866 | 11883651 | ID=cds.MS.gene27971.t1;Parent=MS.gene27971.t1 |
| chr4.4 | exon | 11884754 | 11884864 | 11884754 | ID=MS.gene27971.t1.exon7;Parent=MS.gene27971.t1 |
| chr4.4 | CDS | 11884754 | 11884864 | 11884754 | ID=cds.MS.gene27971.t1;Parent=MS.gene27971.t1 |
| chr4.4 | exon | 11885828 | 11886103 | 11885828 | ID=MS.gene27971.t1.exon8;Parent=MS.gene27971.t1 |
| chr4.4 | CDS | 11885828 | 11886103 | 11885828 | ID=cds.MS.gene27971.t1;Parent=MS.gene27971.t1 |
| chr4.4 | exon | 11886453 | 11886727 | 11886453 | ID=MS.gene27971.t1.exon9;Parent=MS.gene27971.t1 |
| chr4.4 | CDS | 11886453 | 11886727 | 11886453 | ID=cds.MS.gene27971.t1;Parent=MS.gene27971.t1 |
| chr4.4 | exon | 11886843 | 11887194 | 11886843 | ID=MS.gene27971.t1.exon10;Parent=MS.gene27971.t1 |
| chr4.4 | CDS | 11886843 | 11887194 | 11886843 | ID=cds.MS.gene27971.t1;Parent=MS.gene27971.t1 |
| chr4.4 | exon | 11887289 | 11887573 | 11887289 | ID=MS.gene27971.t1.exon11;Parent=MS.gene27971.t1 |
| chr4.4 | CDS | 11887289 | 11887573 | 11887289 | ID=cds.MS.gene27971.t1;Parent=MS.gene27971.t1 |
| chr4.4 | exon | 11887769 | 11888350 | 11887769 | ID=MS.gene27971.t1.exon12;Parent=MS.gene27971.t1 |
| chr4.4 | CDS | 11887769 | 11888350 | 11887769 | ID=cds.MS.gene27971.t1;Parent=MS.gene27971.t1 |
| Gene Sequence |
| Protein sequence |
