Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29230.t1 | XP_003589749.1 | 98 | 443 | 9 | 0 | 1 | 443 | 1 | 443 | 6.70E-258 | 899.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29230.t1 | Q9SIS4 | 62.5 | 424 | 134 | 6 | 9 | 429 | 1 | 402 | 1.8e-147 | 524.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29230.t1 | G7IBG6 | 98.0 | 443 | 9 | 0 | 1 | 443 | 1 | 443 | 4.8e-258 | 899.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050170 | MS.gene29230 | -0.809399 | 1.93E-50 | -1.69E-46 |
| MS.gene050496 | MS.gene29230 | -0.814976 | 1.17E-51 | -1.69E-46 |
| MS.gene050504 | MS.gene29230 | -0.804982 | 1.66E-49 | -1.69E-46 |
| MS.gene050577 | MS.gene29230 | -0.804814 | 1.80E-49 | -1.69E-46 |
| MS.gene050612 | MS.gene29230 | -0.811832 | 5.75E-51 | -1.69E-46 |
| MS.gene050868 | MS.gene29230 | -0.801008 | 1.10E-48 | -1.69E-46 |
| MS.gene050871 | MS.gene29230 | -0.801529 | 8.63E-49 | -1.69E-46 |
| MS.gene050904 | MS.gene29230 | -0.806589 | 7.65E-50 | -1.69E-46 |
| MS.gene051127 | MS.gene29230 | 0.800427 | 1.45E-48 | -1.69E-46 |
| MS.gene051138 | MS.gene29230 | 0.801745 | 7.79E-49 | -1.69E-46 |
| MS.gene051651 | MS.gene29230 | 0.818299 | 2.11E-52 | -1.69E-46 |
| MS.gene052494 | MS.gene29230 | 0.805422 | 1.34E-49 | -1.69E-46 |
| MS.gene05470 | MS.gene29230 | -0.808507 | 2.99E-50 | -1.69E-46 |
| MS.gene055748 | MS.gene29230 | -0.800497 | 1.40E-48 | -1.69E-46 |
| MS.gene055751 | MS.gene29230 | -0.8209 | 5.37E-53 | -1.69E-46 |
| MS.gene05589 | MS.gene29230 | -0.836859 | 7.31E-57 | -1.69E-46 |
| MS.gene056504 | MS.gene29230 | -0.83692 | 7.05E-57 | -1.69E-46 |
| MS.gene057768 | MS.gene29230 | 0.820239 | 7.62E-53 | -1.69E-46 |
| MS.gene058171 | MS.gene29230 | 0.831211 | 1.90E-55 | -1.69E-46 |
| MS.gene058173 | MS.gene29230 | 0.826841 | 2.17E-54 | -1.69E-46 |
| MS.gene058175 | MS.gene29230 | 0.833242 | 5.97E-56 | -1.69E-46 |
| MS.gene059865 | MS.gene29230 | -0.821207 | 4.57E-53 | -1.69E-46 |
| MS.gene06000 | MS.gene29230 | -0.818658 | 1.75E-52 | -1.69E-46 |
| MS.gene060762 | MS.gene29230 | -0.801675 | 8.05E-49 | -1.69E-46 |
| MS.gene060778 | MS.gene29230 | -0.809986 | 1.44E-50 | -1.69E-46 |
| MS.gene06077 | MS.gene29230 | -0.805453 | 1.33E-49 | -1.69E-46 |
| MS.gene060982 | MS.gene29230 | -0.824317 | 8.62E-54 | -1.69E-46 |
| MS.gene061044 | MS.gene29230 | 0.824887 | 6.33E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene018546 | MS.gene29230 | PPI |
| MS.gene29230 | MS.gene64505 | PPI |
| MS.gene09836 | MS.gene29230 | PPI |
| MS.gene061907 | MS.gene29230 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29230.t1 | MTR_1g038810 | 97.968 | 443 | 9 | 0 | 1 | 443 | 1 | 443 | 0.0 | 912 |
| MS.gene29230.t1 | MTR_1g038810 | 96.840 | 443 | 10 | 1 | 1 | 443 | 1 | 439 | 0.0 | 897 |
| MS.gene29230.t1 | MTR_6g072010 | 53.403 | 382 | 154 | 5 | 42 | 412 | 17 | 385 | 9.47e-143 | 419 |
| MS.gene29230.t1 | MTR_6g072010 | 53.403 | 382 | 154 | 5 | 42 | 412 | 28 | 396 | 3.43e-142 | 418 |
| MS.gene29230.t1 | MTR_7g100070 | 42.155 | 427 | 183 | 9 | 10 | 412 | 11 | 397 | 7.43e-102 | 317 |
| MS.gene29230.t1 | MTR_7g100070 | 47.126 | 348 | 144 | 5 | 65 | 412 | 91 | 398 | 9.59e-102 | 316 |
| MS.gene29230.t1 | MTR_7g100070 | 47.126 | 348 | 144 | 5 | 65 | 412 | 131 | 438 | 4.66e-101 | 316 |
| MS.gene29230.t1 | MTR_1g038820 | 96.711 | 152 | 5 | 0 | 443 | 594 | 82 | 233 | 1.26e-99 | 302 |
| MS.gene29230.t1 | MTR_6g009260 | 40.767 | 417 | 211 | 10 | 26 | 418 | 4 | 408 | 2.16e-96 | 302 |
| MS.gene29230.t1 | MTR_8g043480 | 52.720 | 239 | 106 | 3 | 177 | 411 | 45 | 280 | 9.10e-84 | 264 |
| MS.gene29230.t1 | MTR_1g071680 | 54.852 | 237 | 100 | 3 | 178 | 410 | 288 | 521 | 2.88e-83 | 271 |
| MS.gene29230.t1 | MTR_1g071680 | 55.263 | 76 | 33 | 1 | 59 | 134 | 87 | 161 | 6.59e-18 | 87.8 |
| MS.gene29230.t1 | MTR_5g006820 | 53.586 | 237 | 104 | 2 | 177 | 410 | 354 | 587 | 9.50e-83 | 271 |
| MS.gene29230.t1 | MTR_5g006820 | 54.667 | 75 | 33 | 1 | 60 | 134 | 90 | 163 | 3.58e-17 | 85.5 |
| MS.gene29230.t1 | MTR_8g043480 | 52.720 | 239 | 106 | 3 | 177 | 411 | 175 | 410 | 7.27e-82 | 264 |
| MS.gene29230.t1 | MTR_8g043480 | 48.649 | 74 | 37 | 1 | 61 | 134 | 7 | 79 | 2.22e-14 | 75.9 |
| MS.gene29230.t1 | MTR_8g091360 | 52.800 | 250 | 109 | 3 | 165 | 411 | 306 | 549 | 1.18e-81 | 268 |
| MS.gene29230.t1 | MTR_8g091360 | 52.632 | 76 | 35 | 1 | 59 | 134 | 136 | 210 | 5.61e-16 | 81.6 |
| MS.gene29230.t1 | MTR_1g103330 | 53.586 | 237 | 103 | 3 | 178 | 410 | 315 | 548 | 1.48e-81 | 267 |
| MS.gene29230.t1 | MTR_1g103330 | 53.333 | 75 | 34 | 1 | 60 | 134 | 88 | 161 | 1.27e-17 | 87.0 |
| MS.gene29230.t1 | MTR_8g043480 | 52.720 | 239 | 106 | 3 | 177 | 411 | 240 | 475 | 1.86e-81 | 265 |
| MS.gene29230.t1 | MTR_8g043480 | 38.261 | 115 | 64 | 2 | 20 | 134 | 37 | 144 | 3.30e-15 | 79.0 |
| MS.gene29230.t1 | MTR_7g095260 | 52.321 | 237 | 106 | 3 | 178 | 410 | 236 | 469 | 1.69e-79 | 259 |
| MS.gene29230.t1 | MTR_7g095260 | 53.947 | 76 | 34 | 1 | 59 | 134 | 35 | 109 | 9.16e-17 | 84.0 |
| MS.gene29230.t1 | MTR_7g095260 | 52.321 | 237 | 106 | 3 | 178 | 410 | 288 | 521 | 3.17e-79 | 260 |
| MS.gene29230.t1 | MTR_7g095260 | 36.538 | 156 | 74 | 4 | 3 | 134 | 7 | 161 | 4.50e-17 | 85.1 |
| MS.gene29230.t1 | MTR_6g042240 | 53.879 | 232 | 101 | 2 | 180 | 411 | 332 | 557 | 1.30e-76 | 254 |
| MS.gene29230.t1 | MTR_6g042240 | 40.367 | 109 | 53 | 3 | 60 | 157 | 54 | 161 | 1.12e-15 | 80.9 |
| MS.gene29230.t1 | MTR_6g042240 | 53.879 | 232 | 101 | 2 | 180 | 411 | 372 | 597 | 1.99e-76 | 255 |
| MS.gene29230.t1 | MTR_6g042240 | 40.367 | 109 | 53 | 3 | 60 | 157 | 94 | 201 | 1.32e-15 | 80.5 |
| MS.gene29230.t1 | MTR_1g097690 | 52.155 | 232 | 105 | 2 | 180 | 411 | 354 | 579 | 3.94e-76 | 254 |
| MS.gene29230.t1 | MTR_1g097690 | 38.843 | 121 | 65 | 4 | 20 | 135 | 56 | 172 | 8.11e-14 | 74.7 |
| MS.gene29230.t1 | MTR_6g042240 | 53.879 | 232 | 101 | 2 | 180 | 411 | 385 | 610 | 3.95e-76 | 254 |
| MS.gene29230.t1 | MTR_6g042240 | 40.367 | 109 | 53 | 3 | 60 | 157 | 107 | 214 | 1.56e-15 | 80.5 |
| MS.gene29230.t1 | MTR_5g014090 | 52.586 | 232 | 107 | 1 | 180 | 411 | 370 | 598 | 1.09e-73 | 248 |
| MS.gene29230.t1 | MTR_5g014090 | 47.436 | 78 | 40 | 1 | 60 | 137 | 102 | 178 | 9.00e-16 | 81.3 |
| MS.gene29230.t1 | MTR_4g098850 | 45.788 | 273 | 143 | 3 | 139 | 411 | 554 | 821 | 1.05e-71 | 247 |
| MS.gene29230.t1 | MTR_4g098850 | 49.215 | 191 | 94 | 1 | 221 | 411 | 2 | 189 | 8.89e-54 | 197 |
| MS.gene29230.t1 | MTR_4g098850 | 37.748 | 151 | 75 | 3 | 1 | 137 | 281 | 426 | 2.02e-18 | 89.7 |
| MS.gene29230.t1 | MTR_8g091360 | 54.717 | 159 | 66 | 2 | 165 | 320 | 306 | 461 | 2.22e-47 | 173 |
| MS.gene29230.t1 | MTR_8g091360 | 52.632 | 76 | 35 | 1 | 59 | 134 | 136 | 210 | 3.62e-16 | 81.6 |
| MS.gene29230.t1 | MTR_1g097690 | 53.191 | 141 | 66 | 0 | 180 | 320 | 354 | 494 | 6.25e-44 | 164 |
| MS.gene29230.t1 | MTR_1g097690 | 37.705 | 122 | 65 | 4 | 20 | 135 | 56 | 172 | 5.46e-14 | 75.1 |
| MS.gene29230.t1 | MTR_5g014090 | 50.000 | 140 | 70 | 0 | 180 | 319 | 370 | 509 | 7.20e-35 | 139 |
| MS.gene29230.t1 | MTR_5g014090 | 47.436 | 78 | 40 | 1 | 60 | 137 | 102 | 178 | 7.25e-16 | 81.3 |
| MS.gene29230.t1 | MTR_1g078100 | 25.522 | 431 | 222 | 13 | 24 | 409 | 225 | 601 | 8.70e-31 | 128 |
| MS.gene29230.t1 | MTR_1g078100 | 25.522 | 431 | 222 | 13 | 24 | 409 | 214 | 590 | 1.05e-30 | 128 |
| MS.gene29230.t1 | MTR_1g078100 | 25.693 | 397 | 203 | 12 | 58 | 409 | 521 | 870 | 2.15e-30 | 127 |
| MS.gene29230.t1 | MTR_6g092670 | 28.710 | 310 | 159 | 8 | 177 | 437 | 643 | 939 | 3.92e-26 | 114 |
| MS.gene29230.t1 | MTR_1g021730 | 30.588 | 255 | 145 | 12 | 163 | 403 | 72 | 308 | 1.31e-16 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29230.t1 | AT2G01900 | 62.037 | 432 | 139 | 6 | 1 | 429 | 1 | 410 | 0.0 | 534 |
| MS.gene29230.t1 | AT2G01900 | 62.500 | 424 | 134 | 6 | 9 | 429 | 1 | 402 | 0.0 | 531 |
| MS.gene29230.t1 | AT2G01900 | 61.321 | 424 | 130 | 7 | 9 | 429 | 1 | 393 | 1.38e-178 | 511 |
| MS.gene29230.t1 | AT2G37440 | 45.952 | 420 | 203 | 5 | 10 | 411 | 11 | 424 | 2.98e-118 | 359 |
| MS.gene29230.t1 | AT2G37440 | 45.952 | 420 | 203 | 5 | 10 | 411 | 11 | 424 | 2.98e-118 | 359 |
| MS.gene29230.t1 | AT2G37440 | 47.945 | 365 | 149 | 6 | 66 | 411 | 1 | 343 | 3.15e-107 | 328 |
| MS.gene29230.t1 | AT5G65090 | 50.545 | 275 | 126 | 3 | 144 | 411 | 162 | 433 | 2.44e-86 | 276 |
| MS.gene29230.t1 | AT5G65090 | 48.052 | 77 | 39 | 1 | 59 | 135 | 5 | 80 | 3.08e-15 | 79.0 |
| MS.gene29230.t1 | AT5G65090 | 50.545 | 275 | 126 | 3 | 144 | 411 | 225 | 496 | 1.43e-85 | 276 |
| MS.gene29230.t1 | AT5G65090 | 48.052 | 77 | 39 | 1 | 59 | 135 | 68 | 143 | 4.99e-15 | 78.6 |
| MS.gene29230.t1 | AT5G65090 | 50.545 | 275 | 126 | 3 | 144 | 411 | 225 | 496 | 1.43e-85 | 276 |
| MS.gene29230.t1 | AT5G65090 | 48.052 | 77 | 39 | 1 | 59 | 135 | 68 | 143 | 4.99e-15 | 78.6 |
| MS.gene29230.t1 | AT2G32010 | 54.008 | 237 | 102 | 3 | 178 | 410 | 326 | 559 | 2.54e-83 | 272 |
| MS.gene29230.t1 | AT2G32010 | 54.667 | 75 | 33 | 1 | 60 | 134 | 87 | 160 | 8.43e-19 | 90.5 |
| MS.gene29230.t1 | AT2G32010 | 54.008 | 237 | 102 | 3 | 178 | 410 | 326 | 559 | 2.54e-83 | 272 |
| MS.gene29230.t1 | AT2G32010 | 54.667 | 75 | 33 | 1 | 60 | 134 | 87 | 160 | 8.43e-19 | 90.5 |
| MS.gene29230.t1 | AT2G32010 | 54.008 | 237 | 102 | 3 | 178 | 410 | 326 | 559 | 2.54e-83 | 272 |
| MS.gene29230.t1 | AT2G32010 | 54.667 | 75 | 33 | 1 | 60 | 134 | 87 | 160 | 8.43e-19 | 90.5 |
| MS.gene29230.t1 | AT2G32010 | 54.008 | 237 | 102 | 3 | 178 | 410 | 326 | 559 | 2.54e-83 | 272 |
| MS.gene29230.t1 | AT2G32010 | 54.667 | 75 | 33 | 1 | 60 | 134 | 87 | 160 | 8.43e-19 | 90.5 |
| MS.gene29230.t1 | AT1G05470 | 53.586 | 237 | 103 | 3 | 178 | 410 | 349 | 582 | 4.12e-83 | 272 |
| MS.gene29230.t1 | AT1G05470 | 54.545 | 77 | 34 | 1 | 60 | 136 | 88 | 163 | 6.04e-19 | 91.3 |
| MS.gene29230.t1 | AT1G05470 | 53.586 | 237 | 103 | 3 | 178 | 410 | 349 | 582 | 4.12e-83 | 272 |
| MS.gene29230.t1 | AT1G05470 | 54.545 | 77 | 34 | 1 | 60 | 136 | 88 | 163 | 6.04e-19 | 91.3 |
| MS.gene29230.t1 | AT5G04980 | 51.261 | 238 | 111 | 2 | 177 | 411 | 157 | 392 | 1.55e-80 | 259 |
| MS.gene29230.t1 | AT5G04980 | 48.810 | 252 | 124 | 2 | 163 | 411 | 178 | 427 | 6.49e-80 | 259 |
| MS.gene29230.t1 | AT5G04980 | 54.412 | 68 | 30 | 1 | 62 | 129 | 7 | 73 | 3.85e-15 | 78.6 |
| MS.gene29230.t1 | AT5G04980 | 48.810 | 252 | 124 | 2 | 163 | 411 | 178 | 427 | 6.49e-80 | 259 |
| MS.gene29230.t1 | AT5G04980 | 54.412 | 68 | 30 | 1 | 62 | 129 | 7 | 73 | 3.85e-15 | 78.6 |
| MS.gene29230.t1 | AT5G04980 | 48.810 | 252 | 124 | 2 | 163 | 411 | 207 | 456 | 8.32e-80 | 259 |
| MS.gene29230.t1 | AT5G04980 | 54.412 | 68 | 30 | 1 | 62 | 129 | 36 | 102 | 4.28e-15 | 78.6 |
| MS.gene29230.t1 | AT3G63240 | 54.202 | 238 | 100 | 4 | 178 | 410 | 278 | 511 | 1.36e-79 | 261 |
| MS.gene29230.t1 | AT3G63240 | 54.545 | 77 | 34 | 1 | 65 | 141 | 89 | 164 | 5.39e-17 | 84.7 |
| MS.gene29230.t1 | AT3G63240 | 54.202 | 238 | 100 | 4 | 178 | 410 | 278 | 511 | 1.36e-79 | 261 |
| MS.gene29230.t1 | AT3G63240 | 54.545 | 77 | 34 | 1 | 65 | 141 | 89 | 164 | 5.39e-17 | 84.7 |
| MS.gene29230.t1 | AT1G34120 | 50.427 | 234 | 109 | 2 | 180 | 411 | 185 | 413 | 2.03e-76 | 249 |
| MS.gene29230.t1 | AT1G34120 | 50.427 | 234 | 109 | 2 | 180 | 411 | 336 | 564 | 1.36e-74 | 249 |
| MS.gene29230.t1 | AT1G34120 | 47.368 | 76 | 39 | 1 | 60 | 135 | 97 | 171 | 2.87e-15 | 79.3 |
| MS.gene29230.t1 | AT1G34120 | 50.427 | 234 | 109 | 2 | 180 | 411 | 340 | 568 | 1.69e-74 | 249 |
| MS.gene29230.t1 | AT1G34120 | 47.368 | 76 | 39 | 1 | 60 | 135 | 101 | 175 | 3.10e-15 | 79.3 |
| MS.gene29230.t1 | AT4G18010 | 48.945 | 237 | 118 | 1 | 175 | 411 | 387 | 620 | 4.26e-73 | 246 |
| MS.gene29230.t1 | AT4G18010 | 53.947 | 76 | 34 | 1 | 60 | 135 | 107 | 181 | 1.86e-16 | 83.6 |
| MS.gene29230.t1 | AT1G34120 | 50.427 | 234 | 108 | 3 | 180 | 411 | 340 | 567 | 1.06e-72 | 244 |
| MS.gene29230.t1 | AT1G34120 | 47.368 | 76 | 39 | 1 | 60 | 135 | 101 | 175 | 3.12e-15 | 79.3 |
| MS.gene29230.t1 | AT1G71710 | 49.367 | 237 | 115 | 1 | 180 | 416 | 402 | 633 | 5.82e-71 | 241 |
| MS.gene29230.t1 | AT1G71710 | 43.434 | 99 | 51 | 2 | 37 | 135 | 96 | 189 | 4.26e-17 | 85.5 |
| MS.gene29230.t1 | AT1G71710 | 49.367 | 237 | 115 | 1 | 180 | 416 | 411 | 642 | 8.09e-71 | 241 |
| MS.gene29230.t1 | AT1G71710 | 43.434 | 99 | 51 | 2 | 37 | 135 | 105 | 198 | 4.29e-17 | 85.5 |
| MS.gene29230.t1 | AT4G18010 | 46.377 | 207 | 106 | 2 | 168 | 372 | 378 | 581 | 3.06e-55 | 197 |
| MS.gene29230.t1 | AT4G18010 | 53.947 | 76 | 34 | 1 | 60 | 135 | 107 | 181 | 1.81e-16 | 83.2 |
| MS.gene29230.t1 | AT2G01905 | 57.718 | 149 | 63 | 0 | 443 | 591 | 81 | 229 | 6.54e-48 | 167 |
| MS.gene29230.t1 | AT1G34120 | 49.640 | 139 | 68 | 1 | 180 | 316 | 336 | 474 | 1.16e-38 | 149 |
| MS.gene29230.t1 | AT1G34120 | 47.368 | 76 | 39 | 1 | 60 | 135 | 97 | 171 | 2.11e-15 | 79.3 |
| MS.gene29230.t1 | AT1G65580 | 27.363 | 402 | 195 | 13 | 58 | 409 | 266 | 620 | 1.97e-32 | 133 |
| MS.gene29230.t1 | AT1G65580 | 27.363 | 402 | 195 | 13 | 58 | 409 | 532 | 886 | 5.69e-32 | 132 |
| MS.gene29230.t1 | AT1G05630 | 25.170 | 441 | 216 | 13 | 24 | 409 | 538 | 919 | 2.63e-28 | 121 |
| MS.gene29230.t1 | AT1G05630 | 25.385 | 390 | 202 | 10 | 24 | 378 | 538 | 873 | 7.55e-28 | 119 |
| MS.gene29230.t1 | AT2G31830 | 25.765 | 392 | 204 | 9 | 24 | 381 | 547 | 885 | 1.41e-27 | 119 |
| MS.gene29230.t1 | AT2G31830 | 25.765 | 392 | 204 | 9 | 24 | 381 | 547 | 885 | 1.60e-27 | 119 |
| MS.gene29230.t1 | AT2G31830 | 25.765 | 392 | 204 | 9 | 24 | 381 | 547 | 885 | 2.01e-27 | 118 |
| MS.gene29230.t1 | AT2G43900 | 25.770 | 357 | 182 | 9 | 58 | 378 | 570 | 879 | 8.50e-27 | 116 |
| MS.gene29230.t1 | AT2G43900 | 25.770 | 357 | 182 | 9 | 58 | 378 | 570 | 879 | 9.43e-27 | 116 |
| MS.gene29230.t1 | AT1G47510 | 31.863 | 204 | 110 | 8 | 208 | 403 | 81 | 263 | 1.41e-20 | 92.4 |
| MS.gene29230.t1 | AT1G47510 | 31.863 | 204 | 110 | 8 | 208 | 403 | 143 | 325 | 3.63e-20 | 92.4 |
| MS.gene29230.t1 | AT1G05630 | 23.503 | 451 | 245 | 18 | 24 | 409 | 538 | 953 | 4.87e-14 | 76.3 |
| MS.gene29230.t1 | AT1G47510 | 34.426 | 122 | 65 | 4 | 289 | 403 | 149 | 262 | 1.35e-12 | 68.9 |
Find 106 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTTTGATATCTATGTATT+TGG | 0.059903 | 1.1:-23373491 | MS.gene29230:CDS |
| TGTATCACTATGATCATTAA+TGG | 0.163498 | 1.1:+23373756 | None:intergenic |
| AGATAATTGATTATCATTAT+TGG | 0.230119 | 1.1:+23373792 | None:intergenic |
| GGGAACTCCCATTTCTGTTT+AGG | 0.249594 | 1.1:+23358569 | None:intergenic |
| TGTTGCAAATTTAAAGTCTT+TGG | 0.260927 | 1.1:-23364733 | MS.gene29230:CDS |
| GGAACTCCCATTTCTGTTTA+GGG | 0.268372 | 1.1:+23358570 | None:intergenic |
| TCATGATCAAGAATCTTTCT+TGG | 0.273995 | 1.1:+23372007 | None:intergenic |
| AGGAGACAACGTTTCTTTAT+AGG | 0.275442 | 1.1:-23358734 | MS.gene29230:CDS |
| ACTATGATCATTAATGGATT+TGG | 0.307634 | 1.1:+23373762 | None:intergenic |
| GTCTGCAGTCATCTAGCTTC+TGG | 0.310151 | 1.1:-23372121 | MS.gene29230:CDS |
| TGTGGCATCATGGGCTTCTT+AGG | 0.310282 | 1.1:-23372810 | MS.gene29230:CDS |
| TTCTTACCCCATGCAAGAAC+TGG | 0.322056 | 1.1:+23358548 | None:intergenic |
| ATAGTAAGATTTCAACAAAA+TGG | 0.329956 | 1.1:-23373091 | MS.gene29230:CDS |
| TTTCAATCCTTGAAGAGCTT+TGG | 0.330530 | 1.1:-23358950 | MS.gene29230:CDS |
| AATACATTTGATGCATTTAG+TGG | 0.341530 | 1.1:+23373125 | None:intergenic |
| CCTTTGATATCTATGTATTT+GGG | 0.345233 | 1.1:-23373490 | MS.gene29230:intron |
| AGGAACAACACTTTACAAAT+AGG | 0.346841 | 1.1:-23364695 | MS.gene29230:CDS |
| TATAATTTGTTTAGGTTATG+TGG | 0.348159 | 1.1:-23373909 | MS.gene29230:intron |
| TTAAATTCAGATGAGTACTA+TGG | 0.357661 | 1.1:-23370433 | MS.gene29230:CDS |
| TTGTTATCATGGAATGAAAA+AGG | 0.358187 | 1.1:-23370407 | MS.gene29230:CDS |
| TCATTATTGGTAGACAATAA+AGG | 0.363105 | 1.1:+23373805 | None:intergenic |
| TGAAGCTTGCATGGAAATCA+TGG | 0.364522 | 1.1:-23358775 | MS.gene29230:CDS |
| ACTAAATGCATCAAATGTAT+TGG | 0.366321 | 1.1:-23373123 | MS.gene29230:CDS |
| CAGGTGCTGAACTTTGAGAT+TGG | 0.372950 | 1.1:-23358990 | MS.gene29230:CDS |
| TTAGGTGTGACAGAGTTATA+TGG | 0.379211 | 1.1:-23370266 | MS.gene29230:intron |
| GGTTATGTGGCCTGCATTAG+TGG | 0.381333 | 1.1:-23373896 | MS.gene29230:CDS |
| AGTAAGCGTGTGGTTTCTTC+CGG | 0.381724 | 1.1:+23371214 | None:intergenic |
| CTAAATGCATCAAATGTATT+GGG | 0.392848 | 1.1:-23373122 | MS.gene29230:CDS |
| TGACAGTCCCTAAACAGAAA+TGG | 0.395219 | 1.1:-23358577 | MS.gene29230:CDS |
| TTTGAATCCAAAGCTCTTCA+AGG | 0.399703 | 1.1:+23358943 | None:intergenic |
| AAACTCAAAATAGTGCCTTT+AGG | 0.407236 | 1.1:+23372031 | None:intergenic |
| AAATTACAGAATATCTCTTC+CGG | 0.427972 | 1.1:-23371233 | MS.gene29230:CDS |
| TCAATATTCAACCCTTCATC+TGG | 0.430166 | 1.1:+23373539 | None:intergenic |
| GACAGTCCCTAAACAGAAAT+GGG | 0.438519 | 1.1:-23358576 | MS.gene29230:CDS |
| CTCCCTTGCTGCATCAATCT+TGG | 0.440828 | 1.1:-23358703 | MS.gene29230:intron |
| AGGTGCTGAACTTTGAGATT+GGG | 0.444469 | 1.1:-23358989 | MS.gene29230:CDS |
| TGATACAATGAAAATCTTGT+GGG | 0.446462 | 1.1:+23372925 | None:intergenic |
| ATGTGTTGGATGTGGCATCA+TGG | 0.454248 | 1.1:-23372820 | MS.gene29230:CDS |
| GATTAACTTTGAAGCTTGCA+TGG | 0.458451 | 1.1:-23358784 | MS.gene29230:CDS |
| CATGGATCTTCTCTATGAAA+AGG | 0.461435 | 1.1:-23358757 | MS.gene29230:CDS |
| GCTGATTTACACTGCTGAGC+TGG | 0.467900 | 1.1:+23372948 | None:intergenic |
| TTGTATCATTAGCAAGCAAA+TGG | 0.470095 | 1.1:-23372910 | MS.gene29230:CDS |
| TGCAGTCATGTAATATTGCT+TGG | 0.474593 | 1.1:-23371262 | MS.gene29230:intron |
| TTAGAAATGCTTTGAACAAG+AGG | 0.475137 | 1.1:-23373058 | MS.gene29230:CDS |
| CTAGCTTCTGGAGGAAAAGA+AGG | 0.476817 | 1.1:-23372109 | MS.gene29230:CDS |
| TGGCTAACAAGATACTAAAC+AGG | 0.478415 | 1.1:-23373876 | MS.gene29230:CDS |
| TACTATGGATGTTGTTATCA+TGG | 0.480907 | 1.1:-23370418 | MS.gene29230:CDS |
| TTTGTTAGTACATGGAACAT+AGG | 0.487262 | 1.1:-23373572 | MS.gene29230:CDS |
| TGTGACAGAGTTATATGGTT+AGG | 0.491789 | 1.1:-23370261 | MS.gene29230:CDS |
| TTACATACAAACTCATCAGT+AGG | 0.492553 | 1.1:+23370066 | None:intergenic |
| TTCCCTATTAGAAAATGATC+AGG | 0.493915 | 1.1:-23371170 | MS.gene29230:intron |
| AATGAAATTGAAGTTAAAGA+TGG | 0.495535 | 1.1:-23370530 | MS.gene29230:intron |
| ATTGTTGCAAAGATATTGAA+AGG | 0.497320 | 1.1:-23373025 | MS.gene29230:CDS |
| GGGAGTTCCCAGTTCTTGCA+TGG | 0.498876 | 1.1:-23358556 | MS.gene29230:CDS |
| TGTGTTGGATGTGGCATCAT+GGG | 0.501040 | 1.1:-23372819 | MS.gene29230:CDS |
| GCTGTAAACAATGCCTTGAC+AGG | 0.502522 | 1.1:+23370180 | None:intergenic |
| ATCTTGTTAGCCACTAATGC+AGG | 0.504357 | 1.1:+23373886 | None:intergenic |
| TACATACAAACTCATCAGTA+GGG | 0.506932 | 1.1:+23370067 | None:intergenic |
| ATGTTAAGAGGTTGGCATGA+AGG | 0.507834 | 1.1:-23370490 | MS.gene29230:CDS |
| TTTAAATTTGCAACAGAGAG+TGG | 0.510265 | 1.1:+23364741 | None:intergenic |
| AGATGAAGGGTTGAATATTG+AGG | 0.512538 | 1.1:-23373537 | MS.gene29230:CDS |
| GGTGGAATTGCACCAGATGA+AGG | 0.513447 | 1.1:-23373551 | MS.gene29230:CDS |
| AATAAAGGATCTGTATAACT+TGG | 0.514081 | 1.1:+23373820 | None:intergenic |
| GAGAGTGGACAAATGTTAAG+AGG | 0.517143 | 1.1:-23370502 | MS.gene29230:CDS |
| AAGAAGGAGATGAGAAGCAT+AGG | 0.520647 | 1.1:-23372093 | MS.gene29230:CDS |
| CTCAGGGGAGTGGCAAAAGT+TGG | 0.520770 | 1.1:-23358813 | MS.gene29230:intron |
| TTTGGCAGATAAATCAATCA+AGG | 0.521190 | 1.1:-23364715 | MS.gene29230:CDS |
| GCAGGAGGTGCTCTTCATGC+AGG | 0.525547 | 1.1:-23359077 | MS.gene29230:intron |
| AATGGTTGAGCTCAGGGGAG+TGG | 0.529989 | 1.1:-23358823 | MS.gene29230:intron |
| ATGATACAATGAAAATCTTG+TGG | 0.533362 | 1.1:+23372924 | None:intergenic |
| CTCTCTGAAAGAAACAAGCT+AGG | 0.533780 | 1.1:+23370123 | None:intergenic |
| ATCATTAGCAAGCAAATGGT+TGG | 0.540433 | 1.1:-23372906 | MS.gene29230:CDS |
| GGAGTTCCCAGTTCTTGCAT+GGG | 0.543066 | 1.1:-23358555 | MS.gene29230:CDS |
| AAGATACTAAACAGGAGACT+TGG | 0.544058 | 1.1:-23373868 | MS.gene29230:CDS |
| CATCCATGTGTCTCATGTGT+TGG | 0.554145 | 1.1:-23372834 | MS.gene29230:CDS |
| GTGGACAAATGTTAAGAGGT+TGG | 0.555687 | 1.1:-23370498 | MS.gene29230:CDS |
| TGGTATATTGATATCTGTGT+GGG | 0.555762 | 1.1:-23372886 | MS.gene29230:CDS |
| TCTTACCCCATGCAAGAACT+GGG | 0.561766 | 1.1:+23358549 | None:intergenic |
| AGAGTTATATGGTTAGGCAA+TGG | 0.561868 | 1.1:-23370255 | MS.gene29230:CDS |
| ATCAGATCATAGACCTGTCA+AGG | 0.564826 | 1.1:-23370193 | MS.gene29230:CDS |
| TGTGTCTCATGTGTTGGATG+TGG | 0.571735 | 1.1:-23372828 | MS.gene29230:CDS |
| ATTGTTTACAGCAGAAGTCA+AGG | 0.572440 | 1.1:-23370169 | MS.gene29230:CDS |
| ATATGTTTCTTATACCATGC+TGG | 0.574930 | 1.1:+23370367 | None:intergenic |
| TACCAAGATTGATGCAGCAA+GGG | 0.582538 | 1.1:+23358701 | None:intergenic |
| TTAAAGATGGAGCTAGAGAG+TGG | 0.586261 | 1.1:-23370517 | MS.gene29230:CDS |
| CATGGGCTTCTTAGGCAACA+AGG | 0.587041 | 1.1:-23372802 | MS.gene29230:intron |
| CCCAAATACATAGATATCAA+AGG | 0.590421 | 1.1:+23373490 | None:intergenic |
| TTGTTGCAAAGATATTGAAA+GGG | 0.593223 | 1.1:-23373024 | MS.gene29230:CDS |
| GTTAGTACATGGAACATAGG+TGG | 0.598161 | 1.1:-23373569 | MS.gene29230:CDS |
| TTGGTATATTGATATCTGTG+TGG | 0.601371 | 1.1:-23372887 | MS.gene29230:CDS |
| TCTCTGAAAGAAACAAGCTA+GGG | 0.607994 | 1.1:+23370124 | None:intergenic |
| ACACATGGATGTCTAATGAA+AGG | 0.608846 | 1.1:+23372846 | None:intergenic |
| GATGTCTAATGAAAGGACTC+AGG | 0.609535 | 1.1:+23372853 | None:intergenic |
| GTGGAATTGCACCAGATGAA+GGG | 0.609719 | 1.1:-23373550 | MS.gene29230:CDS |
| CATCCAACACATGAGACACA+TGG | 0.611478 | 1.1:+23372831 | None:intergenic |
| GATTTGAAGAATATTTGTCA+AGG | 0.612327 | 1.1:-23372978 | MS.gene29230:CDS |
| TGCAGTCATCTAGCTTCTGG+AGG | 0.612853 | 1.1:-23372118 | MS.gene29230:CDS |
| GGATCTTCTCTATGAAAAGG+AGG | 0.616448 | 1.1:-23358754 | MS.gene29230:CDS |
| ATTGATGCAGCAAGGGAGCG+AGG | 0.630975 | 1.1:+23358708 | None:intergenic |
| TTACCAAGATTGATGCAGCA+AGG | 0.633673 | 1.1:+23358700 | None:intergenic |
| GATATCTTCTTCCTTACACG+AGG | 0.635194 | 1.1:+23358397 | None:intergenic |
| ACATACAAACTCATCAGTAG+GGG | 0.642428 | 1.1:+23370068 | None:intergenic |
| GCATACCTGATATCTCAAGA+AGG | 0.664436 | 1.1:+23358335 | None:intergenic |
| CAAAGAAGAGATCACCAGCA+TGG | 0.665821 | 1.1:-23370381 | MS.gene29230:intron |
| GATACAATGAAAATCTTGTG+GGG | 0.675193 | 1.1:+23372926 | None:intergenic |
| GAGTTCCCAGTTCTTGCATG+GGG | 0.689153 | 1.1:-23358554 | MS.gene29230:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 23358349 | 23374053 | 23358349 | ID=MS.gene29230 |
| chr1.1 | mRNA | 23358349 | 23374053 | 23358349 | ID=MS.gene29230.t1;Parent=MS.gene29230 |
| chr1.1 | exon | 23374033 | 23374053 | 23374033 | ID=MS.gene29230.t1.exon1;Parent=MS.gene29230.t1 |
| chr1.1 | CDS | 23374033 | 23374053 | 23374033 | ID=cds.MS.gene29230.t1;Parent=MS.gene29230.t1 |
| chr1.1 | exon | 23373745 | 23373917 | 23373745 | ID=MS.gene29230.t1.exon2;Parent=MS.gene29230.t1 |
| chr1.1 | CDS | 23373745 | 23373917 | 23373745 | ID=cds.MS.gene29230.t1;Parent=MS.gene29230.t1 |
| chr1.1 | exon | 23373491 | 23373598 | 23373491 | ID=MS.gene29230.t1.exon3;Parent=MS.gene29230.t1 |
| chr1.1 | CDS | 23373491 | 23373598 | 23373491 | ID=cds.MS.gene29230.t1;Parent=MS.gene29230.t1 |
| chr1.1 | exon | 23372803 | 23373163 | 23372803 | ID=MS.gene29230.t1.exon4;Parent=MS.gene29230.t1 |
| chr1.1 | CDS | 23372803 | 23373163 | 23372803 | ID=cds.MS.gene29230.t1;Parent=MS.gene29230.t1 |
| chr1.1 | exon | 23372007 | 23372191 | 23372007 | ID=MS.gene29230.t1.exon5;Parent=MS.gene29230.t1 |
| chr1.1 | CDS | 23372007 | 23372191 | 23372007 | ID=cds.MS.gene29230.t1;Parent=MS.gene29230.t1 |
| chr1.1 | exon | 23371171 | 23371279 | 23371171 | ID=MS.gene29230.t1.exon6;Parent=MS.gene29230.t1 |
| chr1.1 | CDS | 23371171 | 23371279 | 23371171 | ID=cds.MS.gene29230.t1;Parent=MS.gene29230.t1 |
| chr1.1 | exon | 23370382 | 23370539 | 23370382 | ID=MS.gene29230.t1.exon7;Parent=MS.gene29230.t1 |
| chr1.1 | CDS | 23370382 | 23370539 | 23370382 | ID=cds.MS.gene29230.t1;Parent=MS.gene29230.t1 |
| chr1.1 | exon | 23370074 | 23370284 | 23370074 | ID=MS.gene29230.t1.exon8;Parent=MS.gene29230.t1 |
| chr1.1 | CDS | 23370074 | 23370284 | 23370074 | ID=cds.MS.gene29230.t1;Parent=MS.gene29230.t1 |
| chr1.1 | exon | 23364680 | 23364778 | 23364680 | ID=MS.gene29230.t1.exon9;Parent=MS.gene29230.t1 |
| chr1.1 | CDS | 23364680 | 23364778 | 23364680 | ID=cds.MS.gene29230.t1;Parent=MS.gene29230.t1 |
| chr1.1 | exon | 23359078 | 23359095 | 23359078 | ID=MS.gene29230.t1.exon10;Parent=MS.gene29230.t1 |
| chr1.1 | CDS | 23359078 | 23359095 | 23359078 | ID=cds.MS.gene29230.t1;Parent=MS.gene29230.t1 |
| chr1.1 | exon | 23358939 | 23359009 | 23358939 | ID=MS.gene29230.t1.exon11;Parent=MS.gene29230.t1 |
| chr1.1 | CDS | 23358939 | 23359009 | 23358939 | ID=cds.MS.gene29230.t1;Parent=MS.gene29230.t1 |
| chr1.1 | exon | 23358704 | 23358830 | 23358704 | ID=MS.gene29230.t1.exon12;Parent=MS.gene29230.t1 |
| chr1.1 | CDS | 23358704 | 23358830 | 23358704 | ID=cds.MS.gene29230.t1;Parent=MS.gene29230.t1 |
| chr1.1 | exon | 23358555 | 23358615 | 23358555 | ID=MS.gene29230.t1.exon13;Parent=MS.gene29230.t1 |
| chr1.1 | CDS | 23358555 | 23358615 | 23358555 | ID=cds.MS.gene29230.t1;Parent=MS.gene29230.t1 |
| chr1.1 | exon | 23358349 | 23358431 | 23358349 | ID=MS.gene29230.t1.exon14;Parent=MS.gene29230.t1 |
| chr1.1 | CDS | 23358349 | 23358431 | 23358349 | ID=cds.MS.gene29230.t1;Parent=MS.gene29230.t1 |
| Gene Sequence |
| Protein sequence |
